Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 28 of 213
Found at i:7496922 original size:34 final size:34
Alignment explanation
Indices: 7496879--7496959 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
7496869 AAATGTTGGT
7496879 TGGTGCATGTGGTTAATTCATTCTGTGTGGAGAC
1 TGGTGCATGTGGTTAATTCATTCTGTGTGGAGAC
7496913 TGGTGCATGTGGTTAATTCATTCTGTGTGGAGAC
1 TGGTGCATGTGGTTAATTCATTCTGTGTGGAGAC
* *
7496947 TGATGCACGTGGT
1 TGGTGCATGTGGT
7496960 ATTGTCATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.17, C:0.12, G:0.33, T:0.37
Consensus pattern (34 bp):
TGGTGCATGTGGTTAATTCATTCTGTGTGGAGAC
Found at i:7497439 original size:32 final size:32
Alignment explanation
Indices: 7497396--7497472 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
7497386 CAAAATAAAT
** *
7497396 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
7497428 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
7497460 GATGAAAAGTTAC
1 TATGAAAAGTTAC
7497473 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:7501957 original size:32 final size:32
Alignment explanation
Indices: 7501914--7501990 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
7501904 CAAAATAAAT
** *
7501914 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
7501946 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
7501978 GATGAAAAGTTAC
1 TATGAAAAGTTAC
7501991 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:7504743 original size:23 final size:24
Alignment explanation
Indices: 7504691--7504783 Score: 109
Period size: 26 Copynumber: 3.8 Consensus size: 24
7504681 ACCATGATCA
*
7504691 GTAAGCTCATTCCGAGCTGATGAACG
1 GTAAGCTCA-TACGAGCTGAT-AACG
7504717 GTAAGCTC-TATCGAGCTGA-AACG
1 GTAAGCTCATA-CGAGCTGATAACG
*
7504740 GTAAGCTCATAAGAGCTGATATATCG
1 GTAAGCTCATACGAGCTGATA-A-CG
7504766 GTAAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
7504784 TGGCGAGTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
23 19 0.32
24 4 0.07
25 9 0.15
26 27 0.46
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGATAACG
Found at i:7505229 original size:26 final size:28
Alignment explanation
Indices: 7505193--7505256 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
7505183 GGCCCGACCC
* * *
7505193 ATTTTTAAAAT-AAACATTAAAAAAA-T
1 ATTTTAAAAATAAAAAATAAAAAAAATT
7505219 ATTTTAAAAATAAAAAAATAAAAAAAATT
1 ATTTTAAAAAT-AAAAAATAAAAAAAATT
7505248 ATTTTAAAA
1 ATTTTAAAA
7505257 GTATTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.31
28 12 0.38
29 10 0.31
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (28 bp):
ATTTTAAAAATAAAAAATAAAAAAAATT
Found at i:7505288 original size:6 final size:6
Alignment explanation
Indices: 7505279--7505313 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
7505269 TTTAAAATTC
7505279 AAATAA AAATAA AAATAA AAATAA AAATAA AAATA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATA
7505314 TATATTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:7524456 original size:36 final size:36
Alignment explanation
Indices: 7524416--7524531 Score: 112
Period size: 36 Copynumber: 3.2 Consensus size: 36
7524406 TGTGCTCTGC
*
7524416 AGGGAATCTCATTGTTCACTCTTGGTTGCTTTTGGT
1 AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
* * * **
7524452 AGGGAATCATTACTATTCATTTCTGTCTTTGC-TTT-GT
1 AGGGAATC-TCACTGTTCA-CTCT-TGGTTGCTTTTGGT
* *
7524489 A-GGAATCTCACTGTTCACTCTTGGTTGCTTTAGGC
1 AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
7524524 AGGGAATC
1 AGGGAATC
7524532 ACTCTTGTTC
Statistics
Matches: 61, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
33 5 0.08
34 5 0.08
35 10 0.16
36 20 0.33
37 10 0.16
38 6 0.10
39 5 0.08
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (36 bp):
AGGGAATCTCACTGTTCACTCTTGGTTGCTTTTGGT
Found at i:7524496 original size:72 final size:73
Alignment explanation
Indices: 7524379--7524567 Score: 258
Period size: 72 Copynumber: 2.6 Consensus size: 73
7524369 AACATTTTTA
* * * *
7524379 TAGGGAATC-TCACTGTTCATTTTTGTCTGTGCTCTGCAGGGAATCTCATTGTTCACTCTTGGTT
1 TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
*
7524443 GCTTTTGG
66 GCTTTAGG
* * *
7524451 TAGGGAATCATTACTATTCATTTCTGTCTTTGCTTTGTA-GGAATCTCACTGTTCACTCTTGGTT
1 TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
7524515 GCTTTAGG
66 GCTTTAGG
* *
7524523 CAGGGAATCACT-CTTGTTCATTTCTGTCTTTGCTCTGCAGGGAAT
1 TAGGGAATCATTAC-TGTTCATTTCTGTCTTTGCTCTGCAGGGAAT
7524568 TTCTCATATT
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 1 0.01
72 72 0.71
73 28 0.28
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (73 bp):
TAGGGAATCATTACTGTTCATTTCTGTCTTTGCTCTGCAGGGAATCTCACTGTTCACTCTTGGTT
GCTTTAGG
Found at i:7526119 original size:22 final size:21
Alignment explanation
Indices: 7526090--7526139 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
7526080 GAGCATTACA
*
7526090 AGATATTACAAAATAGATAAT
1 AGATATTACAAAACAGATAAT
*
7526111 AGATGATTACAGAACAGATAAT
1 AGAT-ATTACAAAACAGATAAT
7526133 AGATATT
1 AGATATT
7526140 TCACGACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.28
Consensus pattern (21 bp):
AGATATTACAAAACAGATAAT
Found at i:7527806 original size:16 final size:16
Alignment explanation
Indices: 7527782--7527820 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7527772 TAATGTTGTA
*
7527782 ATTAATAGTGTAAATT
1 ATTATTAGTGTAAATT
7527798 ATTATTAGTGTAAATT
1 ATTATTAGTGTAAATT
7527814 ATTATTA
1 ATTATTA
7527821 TTTTCGTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (16 bp):
ATTATTAGTGTAAATT
Found at i:7532145 original size:114 final size:113
Alignment explanation
Indices: 7531978--7532513 Score: 752
Period size: 114 Copynumber: 4.7 Consensus size: 113
7531968 AAAATAAGCA
* * *
7531978 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACACCGTTTCCCAAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
* *
7532043 CGGGGGTTTAGCGGCGTTTTTAAGAAAGCGCCACTAATGCTCAGGGCT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * * *
7532091 TTAGCGGCGTTTTTGATAAAGCGCCCCAGAAAAACTTAAGCCCAACGACGCCGTTTTGTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCA-AAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTT
* *
7532156 TTGGGGATTTAGCGGCGTTTTT-AGTAAAGCGCCGCTAATGCTCAGGGAT
65 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCT
** * * * * * *
7532205 TTAGCGGCGCTTCCTCA-AAAACGCCGCAATAAATCCTAAACCCAACGACGCCGTTTTGTTAGCT
1 TTAGCGGCG-TTTTTGAGAAAGCGCCGCAA-AAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
7532269 TTCGGGGATTTAGCGGCGTTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
64 TTCGGGGATTTAGCGGCG-TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
7532320 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTGAGCCCAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
* * *
7532385 CAGGGATTTAGCGGCGTTTTTAAGAAAGAGCCGCTAATGTTCAGGGCT
66 CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
7532433 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAATTCTAAGCCCAACGACGCCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAA-CCTAAGCCCAACGACGCCGTTTTCTAAGCTT
**
7532498 TTAGGGATTTAGCGGC
65 TCGGGGATTTAGCGGC
7532514 CAAAAATGCT
Statistics
Matches: 376, Mismatches: 39, Indels: 15
0.87 0.09 0.03
Matches are distributed among these distances:
113 92 0.24
114 230 0.61
115 52 0.14
116 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:7532878 original size:15 final size:15
Alignment explanation
Indices: 7532843--7532893 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
7532833 TATGGATTAG
*
7532843 GGGTT-GGGATTTAA
1 GGGTTAGGGATTAAA
* *
7532857 GGTTTAGGGGTTAAA
1 GGGTTAGGGATTAAA
*
7532872 GGGTTAGGGATTTAA
1 GGGTTAGGGATTAAA
7532887 GGGTTAG
1 GGGTTAG
7532894 ACATGCTAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (15 bp):
GGGTTAGGGATTAAA
Found at i:7533099 original size:15 final size:15
Alignment explanation
Indices: 7533079--7533125 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
7533069 TATTTTAAGG
*
7533079 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
7533094 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
7533108 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
7533122 TTTA
1 TTTA
7533126 AGGGTTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:7533161 original size:14 final size:14
Alignment explanation
Indices: 7533144--7533184 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
7533134 GATTTAAGGT
*
7533144 TTAGGGGTTAGGGG
1 TTAGGAGTTAGGGG
7533158 TTA-GATGTTAGGGG
1 TTAGGA-GTTAGGGG
7533172 TTAGGAGTTAGGG
1 TTAGGAGTTAGGG
7533185 ATTTAAGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 1 0.04
14 21 0.88
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.49, T:0.32
Consensus pattern (14 bp):
TTAGGAGTTAGGGG
Found at i:7533961 original size:105 final size:105
Alignment explanation
Indices: 7533839--7534036 Score: 324
Period size: 105 Copynumber: 1.9 Consensus size: 105
7533829 GCGTTTCTCA
* * *
7533839 TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAA
1 TAAAAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAA
* *
7533904 AACGGCGTCATTTTGCTGAAAATGAAATAGTGACGTTTTT
66 AACAGCGTCATTTTGCTCAAAATGAAATAGTGACGTTTTT
*
7533944 TAAAAACGCCGCAAAAAACAAATCAATATATATAAAAATAAAATAAAAAATTTTTAGCATAGCAA
1 TAAAAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAA
* *
7534009 AACAGCGTTATTTTGTTCAAAATGAAAT
66 AACAGCGTCATTTTGCTCAAAATGAAAT
7534037 TTTTTTGTGG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 85 1.00
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.27
Consensus pattern (105 bp):
TAAAAACGCCGCAAAAAACAAATCAATATATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAA
AACAGCGTCATTTTGCTCAAAATGAAATAGTGACGTTTTT
Found at i:7534459 original size:152 final size:148
Alignment explanation
Indices: 7534183--7534453 Score: 413
Period size: 152 Copynumber: 1.8 Consensus size: 148
7534173 AAAATGAAAC
*
7534183 AGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAATCAATATATAAAAAAATAAAAATAAAAA
1 AGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAATCAATATATAAAAAAATAAAAAAAAAAA
*
7534248 TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAAATTTTTTGCGGCGTTTATCAAAA
66 TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATG-AAAA---TTAGCGGCGTTTAT-AAAA
7534313 AAACGCCGCTAAAGGTAAGCAAT
126 AAACGCCGCTAAAGGTAAGCAAT
* *
7534336 AGCGGCGTTTTTTT-TAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAAA
1 AGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAATCAATATATAAAAAAATAAAA-AAAAAA
*
7534400 ATTTTTAGCATAGCAAAACGACGTTATTTTGTTCAAAATG-AAA-TAGCGGCGTTT
65 A-TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAATTAGCGGCGTTT
7534454 TTTTATAAAA
Statistics
Matches: 111, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
148 10 0.09
152 44 0.40
153 20 0.18
154 37 0.33
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (148 bp):
AGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAATCAATATATAAAAAAATAAAAAAAAAAA
TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAATGAAAATTAGCGGCGTTTATAAAAAAACG
CCGCTAAAGGTAAGCAAT
Found at i:7534534 original size:261 final size:259
Alignment explanation
Indices: 7533839--7534566 Score: 1046
Period size: 261 Copynumber: 2.8 Consensus size: 259
7533829 GCGTTTCTCA
7533839 TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAA
1 TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAA
* *
7533904 AACGGCGTCATTTTGCTGAAAATGAAATAGTGACG--TTTTT-TAAAAACGCCGCAAAAAACAAA
66 AACGGCGTCATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAA
* * *
7533966 TCAATATATATAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACAGCGTTATTTTGTTCAAAA
131 TCAATATATA-AAAAAAAAAAT-AAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAA
* * * *
7534031 TG-AAATTTTTTTGTGGCGTTTCTCATAAAAACGCCGCTAAAGGTAAACAATAGCGGCGTTTTTT
194 TGAAAAATTTTTTGCGGCGTTTATCAAAAAAACGCCGCTAAAGGTAAACAATAGCGGCGTTTTTT
7534095 T
259 T
* * *
7534096 AAAAAACGCCGCAAAAAATAAATCAATTTAT---AAAA-AAAAT--AATTTTTTTAACATAGCAA
1 TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAA
* * *
7534155 AACGGTGTCATTTTGCTGAAAATGAAACAGCGGCGTTTTTTTATAAAAATGCCGCAAAAAACAAA
66 AACGGCGTCATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAA
*
7534220 TCAATATATAAAAAAATAAAAATAAAAA-TTTTAGCATAGCAAAACGACGTCATTTTGTTCAAAA
131 TCAATATAT-AAAAAA-AAAAATAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAA
*
7534284 TGAAAAATTTTTTGCGGCGTTTATCAAAAAAACGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTT
194 TGAAAAATTTTTTGCGGCGTTTATCAAAAAAACGCCGCTAAAGGTAAACAATAGCGGCGTTTTTT
7534349 T
259 T
* *
7534350 TAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAAAATTTTTAGCATAGCA
1 TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAT-AAAAATTTTTTAGCATAGCA
* * * * ***
7534415 AAACGACGTTATTTTGTTCAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAATTTAA
65 AAACGGCGTCATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAA
* * **
7534480 ATCAATTTATAAAAAACAAAATAAATAATTTTTATAATAGCAAAACGGCGTCATTTTGTTCAAAA
130 ATCAATATATAAAAAAAAAAATAAA-AATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAA
*
7534545 TGAAAAATTTTTTACGGCGTTT
194 TGAAAAATTTTTTGCGGCGTTT
7534567 TTCATAGGTA
Statistics
Matches: 418, Mismatches: 38, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
251 48 0.11
253 45 0.11
254 131 0.31
255 6 0.01
257 34 0.08
258 5 0.01
259 8 0.02
260 8 0.02
261 133 0.32
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (259 bp):
TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAA
AACGGCGTCATTTTGCTGAAAATGAAATAGCGGCGTTTTTTTATAAAAACGCCGCAAAAAACAAA
TCAATATATAAAAAAAAAAATAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATG
AAAAATTTTTTGCGGCGTTTATCAAAAAAACGCCGCTAAAGGTAAACAATAGCGGCGTTTTTTT
Found at i:7534536 original size:107 final size:108
Alignment explanation
Indices: 7534333--7534549 Score: 330
Period size: 107 Copynumber: 2.0 Consensus size: 108
7534323 AAAGGTAAGC
* *
7534333 AATAGCGGCGTTTTTTTTAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAA
1 AATAGCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAACAAAATAAAA
* *
7534398 AAATTTTTAGCATAGCAAAACGACGTTATTTTGTTCAAAATGA
66 AAATTTTTAGAATAGCAAAACGACGTCATTTTGTTCAAAATGA
**
7534441 AATAGCGGCGTTTTTTTATAAAAACGCCGCAAAATTTAAATCAATTTAT-AAAAAACAAAAT-AA
1 AATAGCGGCGTTTTTTT-TAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAACAAAATAAA
* * *
7534504 ATAATTTTTATAATAGCAAAACGGCGTCATTTTGTTCAAAATGA
65 AAAATTTTTAGAATAGCAAAACGACGTCATTTTGTTCAAAATGA
7534548 AA
1 AA
7534550 AATTTTTTAC
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
107 43 0.43
108 28 0.28
109 28 0.28
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (108 bp):
AATAGCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAACAAAATAAAA
AAATTTTTAGAATAGCAAAACGACGTCATTTTGTTCAAAATGA
Found at i:7538831 original size:42 final size:43
Alignment explanation
Indices: 7538721--7538841 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 43
7538711 TTTGTGATAG
* * *
7538721 AAGCGTCGCTAAAGGTCATGGTATTTAGAGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAA
* * * *
7538764 AAGTGCCGCCAAAGGTCATGATCTTTAGTGGCGTTTGTAGG-A
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAA
* * *
7538806 ATGCGCCGCTAAAGATCATGGTCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCGTTT
7538842 ATTTTTGAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCGTTTGTAGGAA
Found at i:7541080 original size:11 final size:11
Alignment explanation
Indices: 7541063--7541096 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7541053 GTTATTGTTT
*
7541063 CAATAATTTTG
1 CAATAATTTTA
*
7541074 TAATAATTTTA
1 CAATAATTTTA
7541085 CAATAATTTTA
1 CAATAATTTTA
7541096 C
1 C
7541097 GTTTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (11 bp):
CAATAATTTTA
Found at i:7546604 original size:19 final size:18
Alignment explanation
Indices: 7546571--7546634 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
7546561 TTCTCTCAAC
7546571 AAAAATTTTTAAAAAATCT
1 AAAAATTTTT-AAAAATCT
7546590 AAATAATTTTT-AAAATCT
1 AAA-AATTTTTAAAAATCT
* *
7546608 AAAATATTTATAAAAATTT
1 AAAA-ATTTTTAAAAATCT
*
7546627 CAAAATTT
1 AAAAATTT
7546635 ATTTTTTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.03
18 19 0.49
19 12 0.31
20 7 0.18
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAATTTTTAAAAATCT
Found at i:7546676 original size:15 final size:16
Alignment explanation
Indices: 7546650--7546679 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7546640 TTTTAAAACT
7546650 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
7546666 ATAAAAA-TTCAAAA
1 ATAAAAATTTCAAAA
7546680 TATATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:7547888 original size:29 final size:29
Alignment explanation
Indices: 7547829--7547888 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
7547819 TATGGTTTAA
* *
7547829 TGTGCAATTGTATACATGAACTTTAGTTT
1 TGTGCAATTGTATACATGAAATTTAGATT
* *
7547858 TGTGCAATTTTATACATGAAATTTTGATT
1 TGTGCAATTGTATACATGAAATTTAGATT
7547887 TG
1 TG
7547889 ATCCAGTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (29 bp):
TGTGCAATTGTATACATGAAATTTAGATT
Found at i:7552807 original size:19 final size:18
Alignment explanation
Indices: 7552774--7552855 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
7552764 CTCTCTCAAC
7552774 AAAAATTTTTAAAAAATCT
1 AAAAATTTTT-AAAAATCT
7552793 AAATAATTTTT-AAAATCT
1 AAA-AATTTTTAAAAATCT
* *
7552811 AAAATATTTATAAAAATTT
1 AAAA-ATTTTTAAAAATCT
* * * * *
7552830 CAAATTTTTTTAAATTAT
1 AAAAATTTTTAAAAATCT
7552848 AAAAATTT
1 AAAAATTT
7552856 CAAAAAATAA
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
17 1 0.02
18 30 0.60
19 12 0.24
20 7 0.14
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAAATTTTTAAAAATCT
Found at i:7552875 original size:15 final size:16
Alignment explanation
Indices: 7552846--7552879 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7552836 TTTTTAAATT
7552846 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
7552862 ATAAAAATTT-AAAAA
1 ATAAAAATTTCAAAAA
7552877 ATA
1 ATA
7552880 TATATAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:7554221 original size:29 final size:30
Alignment explanation
Indices: 7554171--7554247 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 30
7554161 CTGCAACTAC
* *
7554171 ACATGAACTATGGTTTAATGTGCAATTGTAT
1 ACATGAACTTTGATTT-ATGTGCAATTGTAT
*
7554202 ACATGAACTTTGATTT-TGTGCAATTTTAT
1 ACATGAACTTTGATTTATGTGCAATTGTAT
*
7554231 ACATGAAATTTTGATTT
1 ACATG-AACTTTGATTT
7554248 GATCCAGTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 17 0.41
30 10 0.24
31 14 0.34
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (30 bp):
ACATGAACTTTGATTTATGTGCAATTGTAT
Found at i:7558241 original size:73 final size:73
Alignment explanation
Indices: 7558154--7558339 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
7558144 ACAACTTGAC
*
7558154 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACAAC
7558219 CACTAACA
66 CACTAACA
*
7558227 AACTTAGTTGGAATACAACTAAGTTTCATCATCACATCCACTTAAAATAAATCACCACCTACAAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACAAC
7558292 CACTAACA
66 CACTAACA
*
7558300 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
7558340 AATAATAATA
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 109 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.27
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACAAC
CACTAACA
Found at i:7558348 original size:3 final size:3
Alignment explanation
Indices: 7558340--7558365 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7558330 ATTACATCCA
7558340 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7558366 AACATGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7561543 original size:73 final size:73
Alignment explanation
Indices: 7561456--7561641 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
7561446 ACAACTTGAC
7561456 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
7561521 CACTAACA
66 CACTAACA
*
7561529 AACTTAGTTGGAATACAACTAAGTTTCATCATCACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
7561594 CACTAACA
66 CACTAACA
*
7561602 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
7561642 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.27
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:7561650 original size:3 final size:3
Alignment explanation
Indices: 7561642--7561685 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7561632 ATTACATCCA
7561642 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7561686 AACATGTGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7563481 original size:5 final size:5
Alignment explanation
Indices: 7563471--7563498 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7563461 GCATTCGATT
7563471 GAATC GAATC GAATC GAATC GAATC GAA
1 GAATC GAATC GAATC GAATC GAATC GAA
7563499 AAATTTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (5 bp):
GAATC
Found at i:7564604 original size:9 final size:9
Alignment explanation
Indices: 7564587--7564617 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7564577 TCGAGTTGAT
7564587 TCGAATAAC
1 TCGAATAAC
*
7564596 TCGATTAAC
1 TCGAATAAC
7564605 TCGAATAAC
1 TCGAATAAC
7564614 TCGA
1 TCGA
7564618 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7565120 original size:19 final size:21
Alignment explanation
Indices: 7565096--7565134 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7565086 AATGCTAGCC
7565096 CAAACCAC-A-TGGCCCAAAT
1 CAAACCACAATTGGCCCAAAT
*
7565115 CAAACCCCAATTGGCCCAAA
1 CAAACCACAATTGGCCCAAA
7565135 AAAATCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.41, C:0.38, G:0.10, T:0.10
Consensus pattern (21 bp):
CAAACCACAATTGGCCCAAAT
Found at i:7566779 original size:12 final size:12
Alignment explanation
Indices: 7566756--7566780 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7566746 TTATGTAATT
7566756 TATATACATATC
1 TATATACATATC
7566768 TATATACATATC
1 TATATACATATC
7566780 T
1 T
7566781 TTTAATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATACATATC
Found at i:7566841 original size:86 final size:86
Alignment explanation
Indices: 7566669--7566852 Score: 214
Period size: 86 Copynumber: 2.1 Consensus size: 86
7566659 TAGTTATATA
* * *
7566669 TATATATATATCTATATACACATTTTTTTAATTTTCATAAATACGTATATACATATTTATATACT
1 TATATATATATCTATATACACATTCTTTTAATTTTCATAAATACATATATACATATCTATATA-T
*
7566734 TATATTTTTATATTATGTAATT
65 TATATTTTTATATTATATAATT
* * * *
7566756 TATATACATATCTATATACATA-TCTTTTAATTTTCATAAATATATTTATACAT-TCT-TAT-TT
1 TATATATATATCTATATACACATTCTTTTAATTTTCATAAATACATATATACATATCTATATATT
*
7566817 ATATTTCTTATTATGTCTTATAATT
66 ATATTT-TTA-TAT-T-ATATAATT
7566842 TATATATATAT
1 TATATATATAT
7566853 ATATGTGTGT
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
82 8 0.10
83 3 0.04
84 6 0.07
85 3 0.04
86 43 0.52
87 20 0.24
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.54
Consensus pattern (86 bp):
TATATATATATCTATATACACATTCTTTTAATTTTCATAAATACATATATACATATCTATATATT
ATATTTTTATATTATATAATT
Found at i:7568338 original size:43 final size:43
Alignment explanation
Indices: 7568290--7568373 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
7568280 AACACAGGAC
7568290 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
1 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
7568333 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATT
1 CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATT
7568374 TACTTGTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.48, C:0.24, G:0.05, T:0.24
Consensus pattern (43 bp):
CTCAGACACAAATAATTAATACTTAGCCACTAAACCAAATTAA
Found at i:7568377 original size:22 final size:22
Alignment explanation
Indices: 7568309--7568378 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
7568299 AAATAATTAA
7568309 TACTTAGCCACTAAACCAAATT
1 TACTTAGCCACTAAACCAAATT
* * * *
7568331 AACTCAGACAC-AAA--TAATT
1 TACTTAGCCACTAAACCAAATT
7568350 AATACTTAGCCACTAAACCAAATT
1 --TACTTAGCCACTAAACCAAATT
7568374 TACTT
1 TACTT
7568379 GTTTGACATA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
19 4 0.11
21 11 0.31
22 16 0.46
24 4 0.11
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.27
Consensus pattern (22 bp):
TACTTAGCCACTAAACCAAATT
Found at i:7572230 original size:32 final size:32
Alignment explanation
Indices: 7572184--7572245 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7572174 GGGCATAAAT
*
7572184 TTTATCCCGAGATTCTCTAGTTTTCAGAATAC
1 TTTATCCCGAGATTCTCAAGTTTTCAGAATAC
* * *
7572216 TTTATCTCGGGATTCTCAATTTTTCAGAAT
1 TTTATCCCGAGATTCTCAAGTTTTCAGAAT
7572246 CCAATCTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (32 bp):
TTTATCCCGAGATTCTCAAGTTTTCAGAATAC
Found at i:7594604 original size:5 final size:5
Alignment explanation
Indices: 7594596--7594643 Score: 69
Period size: 5 Copynumber: 9.6 Consensus size: 5
7594586 TTAAGTATAA
* * *
7594596 ATATT ATATT AGATT ATATT AGATT ATAAT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
7594644 AAAGAAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (5 bp):
ATATT
Found at i:7595617 original size:25 final size:25
Alignment explanation
Indices: 7595589--7595694 Score: 185
Period size: 25 Copynumber: 4.2 Consensus size: 25
7595579 ACCTTAGCGC
7595589 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
7595614 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
* *
7595639 GCTATCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACGTCAGT
*
7595664 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
7595689 GCTCTC
1 GCTCTC
7595695 CGTTTAGCCC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTCAGT
Found at i:7595724 original size:22 final size:22
Alignment explanation
Indices: 7595602--7595741 Score: 95
Period size: 25 Copynumber: 6.0 Consensus size: 22
7595592 CTCTGATTAT
*
7595602 TAGCACGTCAGTGCTCTCTGATTA
1 TAGCACTTCAGTGCTCTCTG--TA
* *
7595626 TTAGCACGTCAGTGCTATCTGATTA
1 -TAGCACTTCAGTGCTCTCTG--TA
7595651 TTAGCACGTT-AGTGCTCTCTGATTA
1 -TAGCAC-TTCAGTGCTCTCTG--TA
* * *
7595676 CTAGCACGTCAGTGCTCTCCGTT
1 -TAGCACTTCAGTGCTCTCTGTA
* *
7595699 TAGCCCATT-TGTGCTCTCTGTA
1 TAGCAC-TTCAGTGCTCTCTGTA
7595721 TAGCACTTCAGTGCTCTCTGT
1 TAGCACTTCAGTGCTCTCTGT
7595742 TCATTAGTGC
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.02
22 31 0.32
23 2 0.02
24 1 0.01
25 60 0.62
26 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (22 bp):
TAGCACTTCAGTGCTCTCTGTA
Found at i:7597554 original size:21 final size:21
Alignment explanation
Indices: 7597524--7597574 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
7597514 GAGCTGAACG
*
7597524 GAAACCCATAAGGGTTAAACA
1 GAAACTCATAAGGGTTAAACA
*
7597545 GAAACTCATATGGGTTAAACA
1 GAAACTCATAAGGGTTAAACA
*
7597566 GAAGCTCAT
1 GAAACTCAT
7597575 GAGAGCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.20
Consensus pattern (21 bp):
GAAACTCATAAGGGTTAAACA
Found at i:7597684 original size:24 final size:24
Alignment explanation
Indices: 7597652--7597710 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
7597642 TTGATGTAAC
*
7597652 TCATCCTTTGCATATACCTTCAAT
1 TCATCCTTTGCATATACCGTCAAT
* * *
7597676 TCATCCTTTTCATTTATCGTCAAT
1 TCATCCTTTGCATATACCGTCAAT
7597700 TCATCCTTTGC
1 TCATCCTTTGC
7597711 CATAGAACGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (24 bp):
TCATCCTTTGCATATACCGTCAAT
Found at i:7599129 original size:18 final size:17
Alignment explanation
Indices: 7599087--7599142 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
7599077 ATTAATTAAT
7599087 TTATTATTATTTTATTA
1 TTATTATTATTTTATTA
* *
7599104 CTATTTATTATTGTTATTG
1 TTA-TTATTATT-TTATTA
7599123 TTATTATTATATTTGATTA
1 TTATTATTAT-TTT-ATTA
7599142 T
1 T
7599143 ATTCCTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 2 0.06
18 17 0.55
19 12 0.39
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (17 bp):
TTATTATTATTTTATTA
Found at i:7605357 original size:28 final size:28
Alignment explanation
Indices: 7605298--7605387 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 28
7605288 TATTTAGTAT
*
7605298 CAGT-ACAGTGT-AGGCC-TAGCCCGATA
1 CAGTAACAGTGTGA-GCCTTAGCCCAATA
* *
7605324 CAGTAACAGTTTGAGCCTTAGTCCAATA
1 CAGTAACAGTGTGAGCCTTAGCCCAATA
* *
7605352 CAGTAATAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGAGCCTTAGCCCAATA
7605380 CAGTAACA
1 CAGTAACA
7605388 ATACAGTGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 9 0.17
28 40 0.75
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGAGCCTTAGCCCAATA
Found at i:7605756 original size:27 final size:27
Alignment explanation
Indices: 7605726--7605784 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
7605716 ATCTCCTAGA
7605726 GGTATAACAGTCATTTTACCCTATAAG
1 GGTATAACAGTCATTTTACCCTATAAG
** * *
7605753 GGTATTTCAGTCATTTTACCCTGTAGG
1 GGTATAACAGTCATTTTACCCTATAAG
7605780 GGTAT
1 GGTAT
7605785 TTCATACAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATAACAGTCATTTTACCCTATAAG
Found at i:7605785 original size:27 final size:27
Alignment explanation
Indices: 7605733--7605788 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
7605723 AGAGGTATAA
7605733 CAGTCATTTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
* *
7605760 CAGTCATTTTACCCTGTAGGGGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
7605787 CA
1 CA
7605789 TACAAGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
CAGTCATTTTACCCTATAAGGGTATTT
Found at i:7606257 original size:43 final size:43
Alignment explanation
Indices: 7606196--7606281 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
7606186 AGGGAGATAG
7606196 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
1 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
7606239 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
1 CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
7606282 GGAAAGAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.16
Consensus pattern (43 bp):
CTCTCGATCAAAAAGGAAATAATAGGAGGTAGAAATCAAAGAC
Found at i:7612463 original size:23 final size:22
Alignment explanation
Indices: 7612437--7612479 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
7612427 GAAATAAAAG
7612437 CAACGTAAATTTAGATGTTGCCA
1 CAACGTAAATTTAG-TGTTGCCA
7612460 CAACGTAAATTTAGTGTTGC
1 CAACGTAAATTTAGTGTTGC
7612480 GATATAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (22 bp):
CAACGTAAATTTAGTGTTGCCA
Found at i:7614091 original size:21 final size:21
Alignment explanation
Indices: 7614067--7614109 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7614057 AACAAGCTAA
* *
7614067 CAAATCTTTCTAAGACTTAGT
1 CAAATATTCCTAAGACTTAGT
*
7614088 CAAATATTCCTAGGACTTAGT
1 CAAATATTCCTAAGACTTAGT
7614109 C
1 C
7614110 TTATTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (21 bp):
CAAATATTCCTAAGACTTAGT
Found at i:7616135 original size:26 final size:26
Alignment explanation
Indices: 7616099--7616154 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
7616089 CGTGATGGAA
7616099 TTGGTATACCATATTCCCAAGTACCT
1 TTGGTATACCATATTCCCAAGTACCT
7616125 TTGGTATACCATATTCCCAAGTACCT
1 TTGGTATACCATATTCCCAAGTACCT
7616151 TTGG
1 TTGG
7616155 GTGCTGGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (26 bp):
TTGGTATACCATATTCCCAAGTACCT
Found at i:7617874 original size:12 final size:12
Alignment explanation
Indices: 7617857--7617881 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7617847 GTTGAGTAGT
7617857 AAAAGAAGAAGA
1 AAAAGAAGAAGA
7617869 AAAAGAAGAAGA
1 AAAAGAAGAAGA
7617881 A
1 A
7617882 GTGGCAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAGA
Found at i:7619011 original size:16 final size:16
Alignment explanation
Indices: 7618985--7619036 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
7618975 AAAAAATATG
* *
7618985 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
7619001 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
7619017 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
7619031 AAAAAA
1 AAAAAA
7619037 GCTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:7619285 original size:56 final size:56
Alignment explanation
Indices: 7619131--7619290 Score: 148
Period size: 56 Copynumber: 2.8 Consensus size: 56
7619121 ATAAAGAAAA
* * * *
7619131 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATATACGTAC
1 ATATATATATAGAAATTAT-AAAATATGAATAGAAAGTATAATATATACATACATAC
* * * * * *
7619188 ATATATATATATAAGTTA-ATAAATATAAATCATAAAG-ATAATGAT-TGCA-AGCATAT
1 ATATATATATAGAAATTATA-AAATATGAAT-AGAAAGTATAAT-ATATACATA-CATAC
*
7619244 ATATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATA
1 ATATATATATAGAAATTATAAAATATGAATAGAAAGTATAATATATA
7619291 TATATAAAAG
Statistics
Matches: 80, Mismatches: 16, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
55 9 0.11
56 48 0.60
57 23 0.29
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (56 bp):
ATATATATATAGAAATTATAAAATATGAATAGAAAGTATAATATATACATACATAC
Found at i:7619310 original size:24 final size:23
Alignment explanation
Indices: 7619242--7619342 Score: 75
Period size: 24 Copynumber: 4.5 Consensus size: 23
7619232 TTGCAAGCAT
* *
7619242 ATATATATATATAGAAATTATAA
1 ATATATATATATAAAAATAATAA
* * *
7619265 A-ATATGTATA-GAAAGT-AT-A
1 ATATATATATATAAAAATAATAA
*
7619284 ATATATATATATAAAAGGTAATAA
1 ATATATATATATAAAA-ATAATAA
*
7619308 ATATATAAATCATAAAAATAATAA
1 ATATATATAT-ATAAAAATAATAA
* *
7619332 TTACATATATA
1 ATATATATATA
7619343 AACTTAAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
19 2 0.03
20 10 0.16
21 6 0.10
22 10 0.16
23 4 0.07
24 23 0.38
25 6 0.10
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATATATATATAAAAATAATAA
Found at i:7619311 original size:22 final size:21
Alignment explanation
Indices: 7619244--7619314 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 21
7619234 GCAAGCATAT
*
7619244 ATATATATATAGAAATTATAA
1 ATATATATATAGAAAGTATAA
*
7619265 A-ATATGTATAGAAAGTATAA
1 ATATATATATAGAAAGTATAA
7619285 TATATATATATA-AAAGGTAATAA
1 -ATATATATATAGAAA-GT-ATAA
7619308 ATATATA
1 ATATATA
7619315 AATCATAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 17 0.40
21 5 0.12
22 17 0.40
23 4 0.09
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.35
Consensus pattern (21 bp):
ATATATATATAGAAAGTATAA
Found at i:7620418 original size:14 final size:15
Alignment explanation
Indices: 7620386--7620421 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
7620376 GTTTCTTCAT
7620386 TTGT-TTTGGGCCAC
1 TTGTATTTGGGCCAC
7620400 TTGTATTTGGGCCAC
1 TTGTATTTGGGCCAC
7620415 -TGTATTT
1 TTGTATTT
7620422 TAGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (15 bp):
TTGTATTTGGGCCAC
Found at i:7620927 original size:127 final size:128
Alignment explanation
Indices: 7620673--7620927 Score: 399
Period size: 127 Copynumber: 2.0 Consensus size: 128
7620663 GTAATGCCAA
* *
7620673 GGAGATAAGACCTGATATGATCTGCTTTCTGCAACTTCAGAAAGATAAGATCTGTGGTTTTAATC
1 GGAGATAAGACCTGATACGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGTGGTTTTAATC
*
7620738 CGCTTCATTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAG
66 CGCTTCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAG
* *
7620801 GGAGATAAGA-CTAGATGCGATCTGCTCTCTGCAACTTCA-AAGAGATAAGATCTGTGTTTTTAA
1 GGAGATAAGACCT-GATACGATCTGCTCTCTGCAACTTCAGAA-AGATAAGATCTGTGGTTTTAA
* * *
7620864 TCCGC-TCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAG
64 TCCGCTTCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAG
7620928 ATAAAATCCA
Statistics
Matches: 117, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
127 59 0.50
128 58 0.50
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (128 bp):
GGAGATAAGACCTGATACGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGTGGTTTTAATC
CGCTTCACTACAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAG
Found at i:7621155 original size:132 final size:132
Alignment explanation
Indices: 7620985--7622039 Score: 1813
Period size: 132 Copynumber: 8.0 Consensus size: 132
7620975 GGATTGGTTT
* * *
7620985 CTTAAATCTGCTTCCCACTATCTTGAAAAGATATGATTTGCCGTCTTCGATCTGCTCTACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* * *
7621050 CTTAGGGAGATAAGATCTACAATATTCAACCTACTCCGCTGGTACTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621115 GG
131 GG
* * *
7621117 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGACGTCTTTGATCTACTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
*
7621182 CTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621247 GG
131 GG
*
7621249 CTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
7621314 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGAAAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621379 GG
131 GG
* * * *
7621381 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTACCGTCTTCGATCTGCTCTACTACTA
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
7621446 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCAGCTGCTGCTCGGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621511 GG
131 GG
7621513 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
*
7621578 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGAAAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621643 GG
131 GG
* * * *
7621645 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATTTGCTCTACTACTA
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
*
7621710 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621775 GG
131 GG
*
7621777 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* *
7621842 CTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7621907 GG
131 GG
*
7621909 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCCTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
* * * *
7621974 TTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
7622039 G
131 G
7622040 TTTCATCGGT
Statistics
Matches: 871, Mismatches: 52, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 871 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
GG
Found at i:7623294 original size:6 final size:6
Alignment explanation
Indices: 7623275--7623312 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
7623265 TGGCCTCTCA
*
7623275 TTTT-T TTTTC- TTTTCT TTTTCT TTTTCT TTTCCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
7623313 TTTATCACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:7623295 original size:11 final size:10
Alignment explanation
Indices: 7623275--7623315 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
7623265 TGGCCTCTCA
7623275 TTTTTTTTTC
1 TTTTTTTTTC
7623285 TTTTCTTTTTC
1 TTTT-TTTTTC
7623296 TTTTTCTTTTCC
1 TTTTT-TTTT-C
7623308 TTTTTTTT
1 TTTTTTTT
7623316 ATCACTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 5 0.18
11 17 0.61
12 6 0.21
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:7629205 original size:16 final size:16
Alignment explanation
Indices: 7629179--7629230 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
7629169 AAAAAATATG
* *
7629179 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
7629195 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
7629211 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
7629225 AAAAAA
1 AAAAAA
7629231 GGTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:7629485 original size:20 final size:20
Alignment explanation
Indices: 7629457--7629505 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7629447 ATATATATAT
*
7629457 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
7629477 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
7629497 ATATATATA
1 ATATATATA
7629506 CGTACATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:7629534 original size:16 final size:17
Alignment explanation
Indices: 7629492--7629538 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
7629482 TATAGAAAGT
7629492 ATAATATATATATACGTAC
1 ATAA-ATATATA-ACGTAC
* *
7629511 ATATATATATAAGGTA-
1 ATAAATATATAACGTAC
7629527 ATAAATATATAA
1 ATAAATATATAA
7629539 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 4 0.16
18 7 0.28
19 3 0.12
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (17 bp):
ATAAATATATAACGTAC
Found at i:7630890 original size:3 final size:3
Alignment explanation
Indices: 7630882--7630920 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
7630872 GTTTGGCATC
*
7630882 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7630921 GTCAACTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:7634729 original size:44 final size:44
Alignment explanation
Indices: 7634674--7634814 Score: 187
Period size: 44 Copynumber: 3.2 Consensus size: 44
7634664 CTGTTTCACA
* * *
7634674 CAACTTCAGGGAAGTAGGATTAGCAGCTTCAGTTTCTTCCACTG
1 CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
* * *
7634718 CAACTTTAGGGAAGTAGGATTAGTAGCTTCAATCTCCTCTACTG
1 CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
*
7634762 CAACTTCAGGG-AGATAAGG-TTGGTAGCTTCAGTCTCCTCCACTG
1 CAACTTCAGGGAAG-T-AGGATTAGTAGCTTCAGTCTCCTCCACTG
7634806 CAACTTCAG
1 CAACTTCAG
7634815 AAAGATAAGA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.02
44 80 0.94
45 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CAACTTCAGGGAAGTAGGATTAGTAGCTTCAGTCTCCTCCACTG
Found at i:7635455 original size:50 final size:51
Alignment explanation
Indices: 7635383--7635621 Score: 189
Period size: 51 Copynumber: 4.7 Consensus size: 51
7635373 TGCATCGCCT
* *** *
7635383 GGGAAGGTAAGATTCGTTGTTGTGGCCTT-AATCTTTTAAATTGCAATGAC-
1 GGGAAAGTAAGATTCACCGTTGTGG-CTTCAATCTTTTAAACTGCAATGACA
* * * * ** * * *
7635433 GGGGAAGTGAGATTCACCGTTGTGACTTCAATCTATTCCACTGCACTGCCT
1 GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACA
* ** *
7635484 GGGAAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTTGCAATGTC-
1 GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACA
* * * * * * ** *
7635534 GGGGAACTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACT-ACCA
1 GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGA-CA
7635585 GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTT
1 GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTT
7635622 TTATTACAAT
Statistics
Matches: 142, Mismatches: 43, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
49 3 0.02
50 69 0.49
51 70 0.49
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (51 bp):
GGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAAACTGCAATGACA
Found at i:7635474 original size:173 final size:173
Alignment explanation
Indices: 7635150--7635497 Score: 391
Period size: 173 Copynumber: 2.0 Consensus size: 173
7635140 ATCTTTTAAT
* * * *
7635150 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTGGCTTTAATCTATTCCATTACATCGCCGGGGA
1 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCCGGGAA
* * ** * *
7635215 GATGAGATTCGCTGTTGTAGCTTCAATCTATTTGACTACAATGTTGGGGAAGTGAGATTCGCTAT
66 GATAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTACAATGACGGGGAAGTGAGATTCACCAT
*
7635280 CGTAGCTTCAATCTGTTCCACTGCACCG-CTAGGGAAA-TAAGA
131 CGTAGCTTCAATCTATTCCACTGCACCGCCT-GGGAAAGTAAGA
* * * ** *
7635322 TTGCAATGTCGGGGAAGGAAGATTTTCCATTGTAGCTTCAATCTATTCCACTGCATCGCCTGGGA
1 TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCC-GGGA
* * * * *
7635387 AGGTAAGATTCGTTGTTGTGGCCTT-AATCT-TTTAAATTGCAATGACGGGGAAGTGAGATTCAC
65 AGATAAGATTCGCTGTTGTAG-CTTCAATCTATTT-AACTACAATGACGGGGAAGTGAGATTCAC
* * *
7635450 CGTTGT-GACTTCAATCTATTCCACTGCACTGCCTGGGAAAGTAAGA
128 CATCGTAG-CTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGA
7635496 TT
1 TT
7635498 CACCGTTGTG
Statistics
Matches: 145, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
172 55 0.38
173 78 0.54
174 12 0.08
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (173 bp):
TTGCAATATCGGGAAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTACATCGCCGGGAA
GATAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTACAATGACGGGGAAGTGAGATTCACCAT
CGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGA
Found at i:7635496 original size:101 final size:101
Alignment explanation
Indices: 7635321--7635621 Score: 403
Period size: 101 Copynumber: 3.0 Consensus size: 101
7635311 GGGAAATAAG
** *
7635321 ATTGCAATGTCGGGGAAG-GAAGATTTTCCATTGTAGCTTCAATCTATTCCACTGCA-TCGCCTG
1 ATTGCAATGTCGGGGAAGTG-AGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACT-GCCTG
* ***
7635384 GGAAGGTAAGATTCGTTGTTGTGGCCTTAATCTTTTAA
64 GGAAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
*
7635422 ATTGCAATGACGGGGAAGTGAGATTCACCGTTGT-GACTTCAATCTATTCCACTGCACTGCCTGG
1 ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAG-CTTCAATCTATTCCACTGCACTGCCTGG
*
7635486 GAAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAA
65 GAAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
* * * * * *
7635523 TTTGCAATGTCGGGGAACTGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTACCAGGG
1 ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTGCCTGGG
7635588 AAAGTAAGATTCACCGTTGTGG-CTTCAATCTTTT
66 AAAGTAAGATTCACCGTTGTGGCCTT-AATCTTTT
7635622 TTATTACAAT
Statistics
Matches: 178, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
100 3 0.02
101 172 0.97
102 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (101 bp):
ATTGCAATGTCGGGGAAGTGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACTGCCTGGG
AAAGTAAGATTCACCGTTGTGGCCTTAATCTTTTAA
Found at i:7647562 original size:42 final size:42
Alignment explanation
Indices: 7647497--7647652 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
7647487 AAATCGTACA
*
7647497 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
7647539 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
7647581 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
7647625 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
7647653 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:7660997 original size:26 final size:26
Alignment explanation
Indices: 7660967--7661053 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
7660957 GAAATTTCTC
** *
7660967 AAAATTTTATTAGGGGTAAAATCGTT
1 AAAATTTTAACAGGGGTAAAATCATT
*
7660993 AAAATTTTAACAAGGGTAAAATCATT
1 AAAATTTTAACAGGGGTAAAATCATT
* *
7661019 AAAATTTTACCAGGGGTAAAATCATC
1 AAAATTTTAACAGGGGTAAAATCATT
7661045 AAAATTTTA
1 AAAATTTTA
7661054 CCTAGAGTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (26 bp):
AAAATTTTAACAGGGGTAAAATCATT
Found at i:7661063 original size:26 final size:27
Alignment explanation
Indices: 7660965--7661066 Score: 113
Period size: 26 Copynumber: 3.9 Consensus size: 27
7660955 ATGAAATTTC
* *
7660965 TCAAAATTTTA-TTAGGGGTAAAATCG
1 TCAAAATTTTACCTAGGGGTAAAATCA
* * *
7660991 TTAAAATTTTAAC-AAGGGTAAAATCA
1 TCAAAATTTTACCTAGGGGTAAAATCA
*
7661017 TTAAAATTTTACC-AGGGGTAAAATCA
1 TCAAAATTTTACCTAGGGGTAAAATCA
*
7661043 TCAAAATTTTACCTA-GAGTAAAAT
1 TCAAAATTTTACCTAGGGGTAAAAT
7661067 TGGGATGAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 65 0.98
27 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (27 bp):
TCAAAATTTTACCTAGGGGTAAAATCA
Found at i:7661064 original size:52 final size:52
Alignment explanation
Indices: 7660967--7661066 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
7660957 GAAATTTCTC
** * * *
7660967 AAAATTTTATTAGGGGTAAAATCGTTAAAATTTTAACAAGGGTAAAATCATT
1 AAAATTTTACCAGGGGTAAAATCATCAAAATTTTAACAAGAGTAAAATCATT
* *
7661019 AAAATTTTACCAGGGGTAAAATCATCAAAATTTTACCTAGAGTAAAAT
1 AAAATTTTACCAGGGGTAAAATCATCAAAATTTTAACAAGAGTAAAAT
7661067 TGGGATGAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (52 bp):
AAAATTTTACCAGGGGTAAAATCATCAAAATTTTAACAAGAGTAAAATCATT
Found at i:7680600 original size:318 final size:315
Alignment explanation
Indices: 7679666--7680770 Score: 1815
Period size: 318 Copynumber: 3.5 Consensus size: 315
7679656 NNNNNNNATC
7679666 ATTT-AAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTG-AATAATGT-AAATTATAA
1 ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
**
7679728 AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCAAAGAAAAAATACGAACAAATGGCCGAA
66 AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAATACGAACAAATGGCCGAA
* *
7679793 GT-AAGAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCTAACAAA
131 GTAAAGAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAA
* * * *
7679857 ATGTACTGAAATAATATAAAATAATAAAGTAAGAAAATAATATATTTTTATTGAAAGTAATAAAA
196 ATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATAATTTT-TTGGAAGTAATAAAA
*
7679922 TTCGGAAAAATAATACGAGCAAAGGGAGGAGTAAGGGTTTTTTTTTACACTAAATTA
260 TTCGGGAAAATAATACGAGCAAAGGGAGGAGTAAGGG-TTTTTTTTACACTAAATTA
* *
7679979 ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCATTGAAATAATATAAAATTATAA
1 ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
* *
7680044 AATTAGAAATTACGATATTTTTAATGTAATAAAATGCGGAGAAAAAATACGAACAAATGGCCGAA
66 AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAATACGAACAAATGGCCGAA
*
7680109 GTAAAAAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAA
131 GTAAAGAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAA
*
7680174 ATTTACTGAAATAATATAAAATAATAAAATACGAAAATAATAT-ATTTTTTGGAAGTAATAAAAT
196 ATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATAATTTTTTGGAAGTAATAAAAT
* **
7680238 TCGGGAAAATAATACGAGTAAAGGGCAGGAGTAAGTATTTTTTTTACACTAAATTA
261 TCGGGAAAATAATACGAGCAAAGGG-AGGAGTAAGGGTTTTTTTTACACTAAATTA
* * *
7680294 ATTTAAAAAACACACTAATTCCCTAAATTTCAAGCATAATGCATTGAAATAATGTAAAATTATAA
1 ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
7680359 AATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGTAAAAAAATACGAACAAATGGCC
66 AATTAGAAATTATGATA-TTTTTAAAGTAATAAAATGCGGAG--AAAAAATACGAACAAATGGCC
* * * *
7680424 GACGTAAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGTAATAATTAATACAAAAATTTCAAAA
128 GAAGTAAAGAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAAC
* *
7680489 AAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATAATTGTTTGGAATTAATAA
193 AAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATAATTTTTTGGAAGTAATAA
* * *
7680554 AATTTGGGAAAATAATACGAGCAAAGGGAAAGAATAAGGGTTTTTTTTTACACTAAATTA
258 AATTCGGGAAAATAATACGAGCAAAGGG-AGGAGTAAGGG-TTTTTTTTACACTAAATTA
*
7680614 ATTTAAAAAGCACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
1 ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
7680679 AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGA
66 AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAG-AAAAAATACGAACAAATGGCCGA
7680744 AGTAAAGAGTGTTTTACTAACTTTTTT
130 AGTAAAGAGTGTTTTACTAACTTTTTT
7680771 TTCAACTTGT
Statistics
Matches: 738, Mismatches: 44, Indels: 15
0.93 0.06 0.02
Matches are distributed among these distances:
313 4 0.01
314 40 0.05
315 142 0.19
316 108 0.15
317 99 0.13
318 175 0.24
319 73 0.10
320 97 0.13
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (315 bp):
ATTTAAAAAACACACTAAATCCCTAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAA
AATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAATACGAACAAATGGCCGAA
GTAAAGAGTGTTTTACTAACTTTTTTAAAAATTCAGAAATAATTAATACAAAAATTTCAAACAAA
ATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATAATTTTTTGGAAGTAATAAAAT
TCGGGAAAATAATACGAGCAAAGGGAGGAGTAAGGGTTTTTTTTACACTAAATTA
Found at i:7686422 original size:27 final size:27
Alignment explanation
Indices: 7686365--7686433 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
7686355 ATAACACAAG
*
7686365 TGGTGCCGCCCAT-GGAAAGGCACCAT
1 TGGTGCTGCCCATGGGAAAGGCACCAT
* * *
7686391 CGGTGCTGCCCATGGGAATGGCACCTT
1 TGGTGCTGCCCATGGGAAAGGCACCAT
*
7686418 TGGTGCTGCCTATGGG
1 TGGTGCTGCCCATGGG
7686434 TTACCCTCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 11 0.31
27 25 0.69
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.22
Consensus pattern (27 bp):
TGGTGCTGCCCATGGGAAAGGCACCAT
Found at i:7688365 original size:23 final size:22
Alignment explanation
Indices: 7688322--7688365 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
7688312 GACCACCAAG
*
7688322 AAATTGATTTTATATTTTTTTA
1 AAATTGATTTTATATTATTTTA
7688344 AAATTGAATTTTACT-TTATTTT
1 AAATTG-ATTTTA-TATTATTTT
7688366 TTTTAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 12 0.63
24 1 0.05
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (22 bp):
AAATTGATTTTATATTATTTTA
Found at i:7688387 original size:26 final size:27
Alignment explanation
Indices: 7688328--7688390 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
7688318 CAAGAAATTG
7688328 ATTTTATATTTTTTTAAAATTGAATTTT
1 ATTTTAT-TTTTTTTAAAATTGAATTTT
*
7688356 ACTTTATTTTTTTTAAATATTG-ATTTT
1 ATTTTATTTTTTTTAAA-ATTGAATTTT
7688383 -TTTTATTT
1 ATTTTATTT
7688391 GGTGGTGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 7 0.22
27 15 0.47
28 10 0.31
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (27 bp):
ATTTTATTTTTTTTAAAATTGAATTTT
Found at i:7688465 original size:21 final size:23
Alignment explanation
Indices: 7688427--7688473 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
7688417 CACCCTTAAG
* *
7688427 TTTTTTTTAAATTGAA-TTTTTA
1 TTTTTTTAAAAATGAATTTTTTA
7688449 TTTTTTTAAAAAT-AATTTTTTA
1 TTTTTTTAAAAATGAATTTTTTA
7688471 TTT
1 TTT
7688474 GGTGTTGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTTTTAAAAATGAATTTTTTA
Found at i:7688573 original size:21 final size:22
Alignment explanation
Indices: 7688549--7688598 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
7688539 TAGTACCACC
7688549 AATTAAAAATTC-A-TTTAAAAA
1 AATTAAAAA-TCAATTTTAAAAA
7688570 AATTAAAAATCAATTTTAAAAA
1 AATTAAAAATCAATTTTAAAAA
7688592 AACTTAA
1 AA-TTAA
7688599 TGGGTGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 2 0.08
21 10 0.38
22 10 0.38
23 4 0.15
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (22 bp):
AATTAAAAATCAATTTTAAAAA
Found at i:7692430 original size:2 final size:2
Alignment explanation
Indices: 7692423--7692447 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7692413 TTTATAACAA
7692423 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7692448 AACGAATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7692881 original size:33 final size:32
Alignment explanation
Indices: 7692825--7692898 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 32
7692815 TTTAAAAAAT
* * *
7692825 ATATATAATAAATGTATATAAATATATTTTCAA
1 ATATAAAATGAATGTATATAAATAAATTTT-AA
*
7692858 ATATCAAATGAATG-ATACTAAATAAATTTTAA
1 ATATAAAATGAATGTATA-TAAATAAATTTTAA
7692890 ATATAAAAT
1 ATATAAAAT
7692899 CTTCACCACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 13 0.37
33 22 0.63
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (32 bp):
ATATAAAATGAATGTATATAAATAAATTTTAA
Found at i:7698530 original size:26 final size:25
Alignment explanation
Indices: 7698501--7698569 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
7698491 CTCATACGAG
* *
7698501 CATATAAACGGGAAGCTCTTTTGAGC
1 CATAT-AACGGGAAGCTCATGTGAGC
7698527 CATATAACGGGAAGCTCATGTGAGC
1 CATATAACGGGAAGCTCATGTGAGC
*
7698552 CATGTAACGGGGAAGCTC
1 CATATAAC-GGGAAGCTC
7698570 CGGAGAGCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
25 25 0.64
26 14 0.36
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATGTGAGC
Found at i:7698577 original size:26 final size:25
Alignment explanation
Indices: 7698523--7698580 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
7698513 AAGCTCTTTT
* *
7698523 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCAGGA
* *
7698548 GAGCCATGTAACGGGGAAGCTCCGGA
1 GAGCCATATAAC-GGGAAGCTCAGGA
7698574 GAGCCAT
1 GAGCCAT
7698581 TAATGGAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.29, C:0.22, G:0.33, T:0.16
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAGGA
Found at i:7705281 original size:41 final size:42
Alignment explanation
Indices: 7705224--7705322 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
7705214 GATCTCGGCA
* * * *
7705224 TCGCACATTTAATGCCCGTTATTC-ACATCGTCATTTTAGTT
1 TCGCACACTTAGTGCCCGTTACTCAACATCATCATTTTAGTT
7705265 TCGCACACTTAGTGCCCGTTACTCAACATCATCATTTTAGTT
1 TCGCACACTTAGTGCCCGTTACTCAACATCATCATTTTAGTT
7705307 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
7705323 ATTCATATAG
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 21 0.40
42 32 0.60
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.36
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCGTTACTCAACATCATCATTTTAGTT
Found at i:7705437 original size:2 final size:2
Alignment explanation
Indices: 7705430--7705464 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7705420 TCGGCTACAT
*
7705430 AC AC AC AC AC AC AC AC AC AC AA AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7705465 TATATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.46, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7709407 original size:2 final size:2
Alignment explanation
Indices: 7709396--7709438 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
7709386 AGATCATTAA
* * *
7709396 AT AT -T AT AT AT AT AC AT AT AT AT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7709437 AT
1 AT
7709439 GTTTTATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7713744 original size:22 final size:22
Alignment explanation
Indices: 7713720--7713762 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7713710 TATGAAGTAA
*
7713720 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
7713743 TTTCCAAAATTATATATTTT
1 TTTACAAAATTATATATTTT
7713763 TAGCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:7726115 original size:41 final size:41
Alignment explanation
Indices: 7726069--7726155 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 41
7726059 CATTTAATGC
** *
7726069 CCATTATTC-ACATCGTCATTTTAGTTTCGCACACTTAGTG
1 CCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
7726109 CTCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
1 C-CATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
7726151 CCATT
1 CCATT
7726156 CATATAGCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
40 1 0.02
41 12 0.29
42 29 0.69
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.39
Consensus pattern (41 bp):
CCATTATTCAACATCACCATTTTAGTTTCGCACAATTAGTG
Found at i:7726263 original size:2 final size:2
Alignment explanation
Indices: 7726256--7726282 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7726246 TCATTCGACT
7726256 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
7726283 GATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7729176 original size:21 final size:20
Alignment explanation
Indices: 7729138--7729177 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7729128 TTATTTAAAA
*
7729138 TATTTTTAAAATACTTTTTT
1 TATTTTTAAAATAATTTTTT
7729158 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAAT-AATTTTT
7729178 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTT
Found at i:7729426 original size:3 final size:3
Alignment explanation
Indices: 7729418--7729451 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7729408 TATGAAAGTA
7729418 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7729452 TGATATGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7729950 original size:23 final size:22
Alignment explanation
Indices: 7729910--7729968 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
7729900 TAAACCACAA
*
7729910 TACAAATATAAGTACAAAATAAC
1 TACAAATATAATTAC-AAATAAC
* *
7729933 TACAAATATAATTCCAAATAAT
1 TACAAATATAATTACAAATAAC
*
7729955 TACAAGATAGAATT
1 TACAA-ATATAATT
7729969 TAATTAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 11 0.35
23 20 0.65
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (22 bp):
TACAAATATAATTACAAATAAC
Found at i:7729952 original size:12 final size:12
Alignment explanation
Indices: 7729910--7729943 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7729900 TAAACCACAA
*
7729910 TACAAATATAAG
1 TACAAATATAAC
7729922 TACAAA-ATAAC
1 TACAAATATAAC
7729933 TACAAATATAA
1 TACAAATATAA
7729944 TTCCAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (12 bp):
TACAAATATAAC
Found at i:7733157 original size:109 final size:107
Alignment explanation
Indices: 7732958--7733153 Score: 295
Period size: 109 Copynumber: 1.8 Consensus size: 107
7732948 ATTTAAGAGA
*
7732958 ATATTTGGCTATTTGGTCAAATGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
* *
7733023 TCCCAAACGCAAAACATTGCCTTATTTTGAAATTTTATAAGG
66 TCCCAAAAGCAAAACATTACCTTATTTTGAAATTTTATAAGG
** *
7733065 ATATTTGGCTATTTGGTTGAACGAGAAAAATTGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
1 ATATTTGGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAA
* *
7733130 TTT-CCAAAAGTAAAATATTACCTT
64 TTTCCCAAAAGCAAAACATTACCTT
7733154 TATTATTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
107 22 0.28
108 17 0.22
109 40 0.51
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (107 bp):
ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATT
TCCCAAAAGCAAAACATTACCTTATTTTGAAATTTTATAAGG
Found at i:7741348 original size:38 final size:39
Alignment explanation
Indices: 7741305--7741467 Score: 192
Period size: 38 Copynumber: 4.2 Consensus size: 39
7741295 AGAAGGAGAG
7741305 GGAAAGGAGAAG-AAAGAAAGAAAGAAAAAGAAAGAAAA
1 GGAAAGGAGAAGAAAAGAAAGAAAGAAAAAGAAAGAAAA
* *
7741343 GGAAAGGAG-AGAAAAGAAAGAAA-AAGAAGGAACGAAAA
1 GGAAAGGAGAAGAAAAGAAAGAAAGAA-AAAGAAAGAAAA
*
7741381 GGAAAGGAGAAGAAAAAAGAAAGAAA-AAGAAGGAAAGAAAA
1 GGAAAGGAGAAG--AAAAGAAAGAAAGAA-AAAGAAAGAAAA
* * *
7741422 GGAAAGGAGAAGAAAAAAAAGAAAGAAGAAG-AAGAAGA
1 GGAAAGGAGAAGAAAAGAAAGAAAGAAAAAGAAAGAAAA
*
7741460 GGGAAGGA
1 GGAAAGGA
7741468 AGGAAAAAGA
Statistics
Matches: 111, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
37 4 0.04
38 52 0.47
39 15 0.14
40 2 0.02
41 38 0.34
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.00
Consensus pattern (39 bp):
GGAAAGGAGAAGAAAAGAAAGAAAGAAAAAGAAAGAAAA
Found at i:7741417 original size:79 final size:78
Alignment explanation
Indices: 7741305--7741486 Score: 234
Period size: 79 Copynumber: 2.4 Consensus size: 78
7741295 AGAAGGAGAG
*
7741305 GGAAAGGAGAAGAAAGAAAGAAAG--AAA-AAGAAAGAAAAGGAAAGGAG-AGAAAAGAAAGAAA
1 GGAAAGGAGAAGAAA-AAAGAAAGAAAAAGAAGAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAA
7741366 -AAGAAGGAACGAAAA
65 GAAGAA-GAA-GAAAA
7741381 GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAA
1 GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAA-GAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAA
*
7741446 GAAGAAGAAGAAGA
65 GAAGAAGAAGAAAA
* * *
7741460 GGGAA-G-GAAGGAAAAAGAAAAAAAAAG
1 GGAAAGGAGAAGAAAAAAGAAAGAAAAAG
7741487 GTGATTTTTT
Statistics
Matches: 95, Mismatches: 5, Indels: 11
0.86 0.05 0.10
Matches are distributed among these distances:
75 8 0.08
76 15 0.16
77 22 0.23
78 3 0.03
79 26 0.27
80 16 0.17
81 5 0.05
ACGTcount: A:0.69, C:0.01, G:0.31, T:0.00
Consensus pattern (78 bp):
GGAAAGGAGAAGAAAAAAGAAAGAAAAAGAAGAAAGAAAAGGAAAGGAGAAGAAAAAAAAGAAAG
AAGAAGAAGAAAA
Found at i:7741453 original size:10 final size:10
Alignment explanation
Indices: 7741306--7741459 Score: 89
Period size: 10 Copynumber: 15.9 Consensus size: 10
7741296 GAAGGAGAGG
*
7741306 GAAAGGAGAA
1 GAAAGAAGAA
7741316 GAAAG-A-AA
1 GAAAGAAGAA
*
7741324 GAAAGAAAAA
1 GAAAGAAGAA
7741334 GAAAGAA-AA
1 GAAAGAAGAA
*
7741343 GGAAAGGAG-A
1 -GAAAGAAGAA
7741353 G-AA-AAGAAA
1 GAAAGAAG-AA
7741362 GAAA-AAGAA
1 GAAAGAAGAA
*
7741371 GGAACGAA-AA
1 -GAAAGAAGAA
*
7741381 GGAAAGGAGAA
1 -GAAAGAAGAA
*
7741392 GAAAAAAGAAA
1 GAAAGAAG-AA
7741403 GAAA-AAGAA
1 GAAAGAAGAA
7741412 GGAAAGAA-AA
1 -GAAAGAAGAA
*
7741422 GGAAAGGAGAA
1 -GAAAGAAGAA
*
7741433 GAAA-AAAAA
1 GAAAGAAGAA
7741442 GAAAGAAGAA
1 GAAAGAAGAA
7741452 G-AAGAAGA
1 GAAAGAAGA
7741460 GGGAAGGAAG
Statistics
Matches: 118, Mismatches: 11, Indels: 31
0.74 0.07 0.19
Matches are distributed among these distances:
7 2 0.02
8 9 0.08
9 25 0.21
10 68 0.58
11 14 0.12
ACGTcount: A:0.69, C:0.01, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:7742643 original size:159 final size:154
Alignment explanation
Indices: 7742269--7742733 Score: 527
Period size: 156 Copynumber: 3.0 Consensus size: 154
7742259 AATGGTATAT
* *
7742269 TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
1 TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAAA
* * *
7742334 TTAGAAAATATGATATTTTTA---AAAGTAATAAAATGCGGAGAAAAAAATATGAACAAAGGGTC
66 TTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAATACGAACAAAGGGTC
7742396 GAAGTAAGAGTTTTTTACTAAATTT-
130 GAAGTAAGAGTTTTTTAC-AAATTTA
* * * * *
7742421 TTAAAAATTCAGA-AATAATTAATACAAATATATCAAACAAAATGTAATG-AATAATATAAAATA
1 TTAAAAA-ACACACTA-AATTAAT--AAAT-T-TCAAACATAATGTAATGAAATAATGTAAAATA
* * *
7742484 AGAAAATAAGAAAATAAT-ATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAGCAA
60 ATAAAATTAGAAAAT-ATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAA
*
7742548 AGGG-CAGGAA-TAAGGATTTTTTTTA-AAATTTA
124 AGGGTC--GAAGTAA-GA-GTTTTTTACAAATTTA
7742580 TTCAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAA
1 TT-AAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAA
* * * * * *
7742645 ATTAGAAAATATGATATTTTTATTGAAAGCAATAAAATTCAGGAAAATAGTACGAATAAATGGCC
65 ATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAAAGGGTC
* * *
7742710 GAAATAAGGGTTTTTTACTAATTT
130 GAAGTAAGAGTTTTTTACAAATTT
7742734 TTTTTTGAAC
Statistics
Matches: 261, Mismatches: 30, Indels: 41
0.79 0.09 0.12
Matches are distributed among these distances:
152 8 0.03
153 10 0.04
154 7 0.03
155 31 0.12
156 110 0.42
157 22 0.08
158 27 0.10
159 33 0.13
160 13 0.05
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.30
Consensus pattern (154 bp):
TTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTAATGAAATAATGTAAAATAATAAAA
TTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGAACAAAGGGTCG
AAGTAAGAGTTTTTTACAAATTTA
Found at i:7744928 original size:18 final size:18
Alignment explanation
Indices: 7744907--7744942 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7744897 TCGTCAATAT
7744907 CATCAGGTACATCGTCCA
1 CATCAGGTACATCGTCCA
7744925 CATCAGGTACATCGTCCA
1 CATCAGGTACATCGTCCA
7744943 TCGTTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (18 bp):
CATCAGGTACATCGTCCA
Found at i:7756344 original size:27 final size:27
Alignment explanation
Indices: 7756286--7756345 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
7756276 ATGGCAGAGG
* *
7756286 CGGCATCGTTGGTGCCCCTGCCACAAA
1 CGGCACCGATGGTGCCCCTGCCACAAA
* *
7756313 TGGCACCGATGGTGCCCCTGCCACAGA
1 CGGCACCGATGGTGCCCCTGCCACAAA
7756340 CGGCAC
1 CGGCAC
7756346 TGCCCCTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.38, G:0.28, T:0.15
Consensus pattern (27 bp):
CGGCACCGATGGTGCCCCTGCCACAAA
Found at i:7756417 original size:4 final size:4
Alignment explanation
Indices: 7756402--7756537 Score: 61
Period size: 4 Copynumber: 33.0 Consensus size: 4
7756392 ATGAGAGGGA
*
7756402 AAAG AGAAG AAAG AAAG AAAG AAAG -AA- AAAG AAATA AAAGG AAAGG
1 AAAG A-AAG AAAG AAAG AAAG AAAG AAAG AAAG AAA-G AAA-G AAA-G
* *
7756448 AGAGG AAAG AAAG -AA- AAAG AAGG AAAG AAAAGG AAATG AGAAG AAA-
1 A-AAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G AAA-G A-AAG AAAG
* * * *
7756494 AAA- AAAG AAAG AAGAGG GAAG GAAG GAA- AAAG AAAG AAAA AAAG
1 AAAG AAAG AAAG AA-A-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG
7756538 GTATTTTTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
3 16 0.15
4 57 0.54
5 27 0.25
6 6 0.06
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:7756432 original size:10 final size:10
Alignment explanation
Indices: 7756408--7756534 Score: 62
Period size: 10 Copynumber: 12.2 Consensus size: 10
7756398 GGGAAAAGAG
7756408 AAGAAAGAAAGA
1 AAGAAAG-AA-A
7756420 AAGAAAGAAA
1 AAGAAAGAAA
*
7756430 AAGAAATAAA
1 AAGAAAGAAA
*
7756440 AGGAAAGGAGAGGA
1 AAGAAA-GA-A--A
7756454 AAGAAAGAAA
1 AAGAAAGAAA
*
7756464 AAGAAGGAAA
1 AAGAAAGAAA
* *
7756474 GA-AAAGGAA
1 AAGAAAGAAA
*
7756483 ATGAGAAGAAA
1 AAGA-AAGAAA
*
7756494 AA-AAA-AGA
1 AAGAAAGAAA
**
7756502 AAGAAGAGGGA
1 AAGAA-AGAAA
* *
7756513 AGGAAGGAAA
1 AAGAAAGAAA
7756523 AAGAAAGAAA
1 AAGAAAGAAA
7756533 AA
1 AA
7756535 AAGGTATTTT
Statistics
Matches: 86, Mismatches: 20, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
8 4 0.05
9 9 0.10
10 41 0.48
11 15 0.17
12 9 0.10
13 2 0.02
14 6 0.07
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:7756456 original size:38 final size:38
Alignment explanation
Indices: 7756412--7756508 Score: 119
Period size: 38 Copynumber: 2.6 Consensus size: 38
7756402 AAAGAGAAGA
*
7756412 AAGAAAGAAAGAAAGAAAAAGAAATAAAAGGAAAGGAG
1 AAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGAAAGGAG
* * *
7756450 AGGAAAGAAAGAAA-AAGAAGGAAAGAAAAGGAAATGAG
1 AAGAAAGAAAGAAAGAA-AAAGAAAGAAAAGGAAAGGAG
7756488 AAGAAA-AAA-AAAGAAAGAAGA
1 AAGAAAGAAAGAAAGAAA-AAGA
7756509 GGGAAGGAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
36 4 0.08
37 10 0.20
38 36 0.72
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (38 bp):
AAGAAAGAAAGAAAGAAAAAGAAAGAAAAGGAAAGGAG
Found at i:7757102 original size:16 final size:15
Alignment explanation
Indices: 7757076--7757105 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7757066 GTACTAAAAT
7757076 AATATAAAATAATAA
1 AATATAAAATAATAA
7757091 AATATGAAAATAATA
1 AATAT-AAAATAATA
7757106 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:7757397 original size:157 final size:155
Alignment explanation
Indices: 7756885--7757655 Score: 801
Period size: 157 Copynumber: 4.9 Consensus size: 155
7756875 AAACACACTA
*
7756885 AATTAAT--AAATTTCAAACATAATATACTAAAATAATGTAAAATAATAAAAT-TAGAAAAT-AT
1 AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATAT-GAAAATAAT
* * *
7756946 GATA-TTTT-TT-AAAGTAATAAAATGTGGAGATAAA-AATACAAACAAAGGGTCGAAGTAAGAG
65 -ATATTTTTATTGAAAGTAATAAAAT-TGGAGA-AAATAATACGAACAAA-GGCCGAAATAAGAG
*
7757007 TTTTTTACTAAATTTTTTAAAAATTCAGAAAT
126 -TTTTTACTAAATTTTTTAAAAA-ACAGAAAT
* *
7757039 AATTAATACAAATATTTCAAACAAAATGTACTAAAATAATATAAAATAATAAAATATGAAAATAA
1 AATTAATAC-AA-ATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAA
** * * *
7757104 TATATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAATACGAGTAAAGGGCAATAATAAGGGT
64 TATATTTTTATTGAAAGTAATAAAATT-GGAGAAAATAATACGAACAAAGGCCGA-AATAAGAG-
** * *
7757168 TTTTTTTTAAATTTATTTAAAAAACA-CACT
126 TTTTTACTAAATTT-TTTAAAAAACAGAAAT
* *
7757198 AAATTAAT--AAATTTCAAACATAATATACTGAAATAATGTAAAATAATAAAAT-TAGAAAAT-A
1 -AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATAT-GAAAATAA
* *
7757259 TGATATTTTT-TT-AAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGACCGAAGTAAGAG
64 T-ATATTTTTATTGAAAGTAATAAAAT-TGGAGAAAATAATACGAACAAAGG-CCGAAATAAGAG
*
7757322 -TTTTACTAAATTTTTTAAAAATTCAGAAAT
126 TTTTTACTAAATTTTTTAAAAA-ACAGAAAT
* * *
7757352 AATTAATACAAATATTTCAAAC-TAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATA
1 AATTAATAC-AA-ATTTCAAACAT-AATGTACTAAAATAATGTAAAATAATAAAATATGAAAATA
* * * *
7757416 ATATATTTTTATTGAAAGTAATAAAATTCGAGAAAATAATACGAGCAAAGGGCAGGAATAAGAGT
63 ATATATTTTTATTGAAAGTAATAAAATTGGAGAAAATAATACGAACAAA-GGCCGAAATAAGAG-
*
7757481 TTTTTACTAAATTTTTTTTAAAAAAAAGAAAT
126 TTTTTACTAAA--TTTTTTAAAAAACAGAAAT
* **
7757513 AATTAATAC--ACTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAATGTAATA
1 AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAATA
* * *
7757576 TATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAGTACGAATAAATGGCCGAAATAAGGGTGT
66 TATTTTTATTGAAAGTAATAAAATT-GGAGAAAATAATACGAACAAA-GGCCGAAATAAGAGT-T
*
7757640 TGTACTAAAATTTTTT
128 TTTACT-AAATTTTTT
7757656 TGAACTTACA
Statistics
Matches: 521, Mismatches: 57, Indels: 76
0.80 0.09 0.12
Matches are distributed among these distances:
152 8 0.02
153 20 0.04
154 24 0.05
155 29 0.06
156 64 0.12
157 159 0.31
158 85 0.16
159 31 0.06
160 52 0.10
161 38 0.07
162 11 0.02
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (155 bp):
AATTAATACAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATATGAAAATAATA
TATTTTTATTGAAAGTAATAAAATTGGAGAAAATAATACGAACAAAGGCCGAAATAAGAGTTTTT
ACTAAATTTTTTAAAAAACAGAAAT
Found at i:7757403 original size:313 final size:313
Alignment explanation
Indices: 7756867--7757655 Score: 1151
Period size: 313 Copynumber: 2.5 Consensus size: 313
7756857 AAAAATGGTA
7756867 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
* * *
7756932 AAATTAGAAAATATGATA-TTTTTTAAAGTAATAAAATGTGGAGATAAAAATACAAACAAAGGGT
66 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAA-GGC
7756996 CGAAGTAAGAGTTTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAC
130 CGAAGTAAGAG--TTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAAC
*
7757061 AAAATGTACTAAAATAATATAAAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATA
193 AAAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATA
* * * * **
7757126 AAATTCGGGAAAATAATACGAGTAAAGGGCAATAATAAGGGTTTTTTTTTAAA-TT
258 AAATTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATTT
*
7757181 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTGAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
7757246 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGAC
66 AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGG-C
*
7757311 CGAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACTA
130 CGAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAA
*
7757376 AATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
195 AATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAA
*
7757441 ATTCGAGAAAATAATACGAGCAAAGGGCAGGAATAAGAGTTTTTTACTAAATTT
260 ATTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATTT
* * * * * * *
7757495 TTTTTAAAAAAAAGA-AATAATTAATACACTTCAAACATAATGTACTAAAATAATGTAAAATAAT
1 TATTTAAAAAACACACTA-AATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAAT
** * * *
7757559 AAAA-TATGAATGTAAT-ATATTTTTATTGAAAGTAATAAAAT-TCGG-GAAAATAGTACGAATA
65 AAAATTA-GAAAAT-ATGATATTTTT-TT-AAAGTAATAAAATGT-GGAGAAAAAAATACGAACA
* *
7757620 AATGGCCGAAATAAGGGTGTTGTACTAAAATTTTTT
125 AA-GGCCGAAGTAAGAGT-TT-TACT-AAATTTTTT
7757656 TGAACTTACA
Statistics
Matches: 433, Mismatches: 29, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
313 163 0.38
314 156 0.36
315 82 0.19
316 19 0.04
317 4 0.01
318 9 0.02
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (313 bp):
TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATATACTAAAATAATGTAAAATAATA
AAATTAGAAAATATGATATTTTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAACAAAGGCC
GAAGTAAGAGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAA
ATGTACTAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAAAA
TTCGAGAAAATAATACGAGCAAAGGGCAAGAATAAGAGTTTTTTACTAAATTT
Found at i:7762583 original size:23 final size:23
Alignment explanation
Indices: 7762538--7762584 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7762528 TAAAAATAAT
*
7762538 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
7762561 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
7762584 A
1 A
7762585 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:7792621 original size:3 final size:3
Alignment explanation
Indices: 7792613--7792645 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
7792603 TCACTAGGTG
*
7792613 GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
7792646 CAGGTCCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:7793866 original size:22 final size:23
Alignment explanation
Indices: 7793834--7793882 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
7793824 TGTAAAGAAA
* **
7793834 TAAATAAAAATTTGTTTTAAAAT
1 TAAATAAAAATTTATTCCAAAAT
7793857 TAAAT-AAAATTTATTCCAAAAT
1 TAAATAAAAATTTATTCCAAAAT
7793879 TAAA
1 TAAA
7793883 CCACAAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAATAAAAATTTATTCCAAAAT
Found at i:7804094 original size:19 final size:19
Alignment explanation
Indices: 7804062--7804107 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7804052 GTTGTTTTCT
* *
7804062 CTTTTAATTTGCAGCCTTC
1 CTTTTGATTCGCAGCCTTC
* *
7804081 CTTTTGATTCGCAGGCTTT
1 CTTTTGATTCGCAGCCTTC
7804100 CTTTTGAT
1 CTTTTGAT
7804108 CTTGTTTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.15, T:0.50
Consensus pattern (19 bp):
CTTTTGATTCGCAGCCTTC
Found at i:7813976 original size:30 final size:30
Alignment explanation
Indices: 7813912--7813977 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
7813902 GGGAATCTGA
* *
7813912 GATAAAGTTTCTAAAATCCCAAAATCCTAT
1 GATAAAGTTTCTAAAATCCCAAAATCCCAC
* *
7813942 GATAAAGTTTCTGAAA-CCCAAAAATCCCGC
1 GATAAAGTTTCTAAAATCCC-AAAATCCCAC
7813972 GATAAA
1 GATAAA
7813978 ATTTACATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.24
Consensus pattern (30 bp):
GATAAAGTTTCTAAAATCCCAAAATCCCAC
Found at i:7816286 original size:19 final size:19
Alignment explanation
Indices: 7816262--7816300 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7816252 AAATTTTTTT
7816262 CCAAAATTTCAAAAATTTC
1 CCAAAATTTCAAAAATTTC
* *
7816281 CCAAAATTTTAAAATTTTC
1 CCAAAATTTCAAAAATTTC
7816300 C
1 C
7816301 TTAGGTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.36
Consensus pattern (19 bp):
CCAAAATTTCAAAAATTTC
Found at i:7817366 original size:21 final size:21
Alignment explanation
Indices: 7817342--7817413 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
7817332 ACAGAAGTGC
7817342 TAAACAGAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
* * * * *
7817363 TAAACGGAAGCTCATAAGAGC
1 TAAACAGAAACCCATAAGGGT
* *
7817384 TGAACAGAAACCCATAAAGGT
1 TAAACAGAAACCCATAAGGGT
7817405 TAAACAGAA
1 TAAACAGAA
7817414 GCTCAAAAGA
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.14
Consensus pattern (21 bp):
TAAACAGAAACCCATAAGGGT
Found at i:7817391 original size:42 final size:42
Alignment explanation
Indices: 7817316--7817434 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 42
7817306 CAGAAGCCCG
* * * * *
7817316 AAGGTTGAACAGAAGCACAGAAGTGCTAAACAGAAACCCATA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
* * *
7817358 AGGGTTAAACGGAAGCTCATAAGAGCTGAACAGAAACCCATA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
*
7817400 AAGGTTAAACAGAAGCTCAAAAGATCTGAAC-GAAA
1 AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAA
7817435 ACTTATATGA
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 4 0.06
42 62 0.94
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (42 bp):
AAGGTTAAACAGAAGCTCAAAAGAGCTGAACAGAAACCCATA
Found at i:7819189 original size:20 final size:20
Alignment explanation
Indices: 7819164--7819237 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
7819154 CGTAAAATGA
7819164 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGTTTTACT
*
7819184 TTTCTGTAAAATG----A--
1 TTTCTGGAAAATGTTTTACT
7819198 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGTTTTACT
* *
7819218 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGTTTTACT
7819238 GGAAAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
14 12 0.27
16 1 0.02
18 1 0.02
20 30 0.68
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGTTTTACT
Found at i:7819193 original size:34 final size:34
Alignment explanation
Indices: 7819149--7819249 Score: 175
Period size: 34 Copynumber: 2.9 Consensus size: 34
7819139 CAGTAAAATG
*
7819149 TTTTCCGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
7819183 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
*
7819217 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTT-CTGGAAAATGTTTT
7819250 CTGGTGTTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
34 51 0.80
35 13 0.20
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCTGTAAAATGATTTCTGGAAAATGTTTTAC
Found at i:7819253 original size:14 final size:15
Alignment explanation
Indices: 7819143--7819253 Score: 59
Period size: 14 Copynumber: 7.0 Consensus size: 15
7819133 GATTGCCAGT
* *
7819143 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
7819157 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7819171 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
7819191 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
7819205 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7819225 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7819240 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7819254 TGTTTGATTG
Statistics
Matches: 76, Mismatches: 8, Indels: 26
0.69 0.07 0.24
Matches are distributed among these distances:
14 37 0.49
15 11 0.14
16 2 0.03
18 2 0.03
20 24 0.32
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7819608 original size:26 final size:26
Alignment explanation
Indices: 7819575--7819632 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
7819565 ATATCAAAAT
7819575 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
7819601 TTATAGAGACCAATTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
7819627 TTATAG
1 TTATAG
7819633 TTTGAGGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:7821008 original size:22 final size:23
Alignment explanation
Indices: 7820983--7821028 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
7820973 ATAATTGCTT
7820983 TTATAGATATATACATATA-TTA
1 TTATAGATATATACATATACTTA
* * *
7821005 TTATATATTTCTACATATACTTA
1 TTATAGATATATACATATACTTA
7821028 T
1 T
7821029 ACACATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
TTATAGATATATACATATACTTA
Found at i:7821036 original size:22 final size:22
Alignment explanation
Indices: 7820994--7821036 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7820984 TATAGATATA
* *
7820994 TACATATATTATTATATATTTC
1 TACATATATTATTACACATTTC
7821016 TACATATACTTA-TACACATTT
1 TACATATA-TTATTACACATTT
7821037 TTTTTTGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (22 bp):
TACATATATTATTACACATTTC
Done.