Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 31 of 213
Found at i:8414599 original size:20 final size:19
Alignment explanation
Indices: 8414550--8414606 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
8414540 CAAATTTTAG
*
8414550 AATTTTTATAAA-TATTTTT
1 AATTTTTA-AAATTATTTTC
*
8414569 AATTTTAAAAATTATTTTC
1 AATTTTTAAAATTATTTTC
8414588 AATTTTTGAAAATTATTTT
1 AATTTTT-AAAATTATTTT
8414607 GATTATTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.09
19 19 0.58
20 11 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTC
Found at i:8415932 original size:22 final size:22
Alignment explanation
Indices: 8415906--8415964 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
8415896 TCACCACCAA
*
8415906 GGATGTTGCGACACCAGTTAGT
1 GGATGTCGCGACACCAGTTAGT
* * *
8415928 GGATGTCACGACATCGGTTAGT
1 GGATGTCGCGACACCAGTTAGT
*
8415950 GGATGTCGCAACACC
1 GGATGTCGCGACACC
8415965 GAGAACCCCC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (22 bp):
GGATGTCGCGACACCAGTTAGT
Found at i:8422065 original size:106 final size:105
Alignment explanation
Indices: 8421927--8422201 Score: 336
Period size: 113 Copynumber: 2.5 Consensus size: 105
8421917 AGAAAAACGA
* *
8421927 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAT-TTTTTT
1 AAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAATCCTTTTT
* *
8421991 TTTTGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAT
66 TTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAA-AAT
* *
8422032 AAAAAAAATTTGTTGGGTGCTGGCCTGTCAATGGCAGGCACACAGTACAAATTTAAAAAAAAAAT
1 AAAAAAAATTT-TTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA-TT-----AAAAAT
* *
8422097 CCTTTTTTTTCGTGTCAAAATCAGATATCAGTTTACGAAAAAAAATTT
59 CCTTTTTTTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAAA-AT
* ** * * *
8422145 TAAAAATTTTTTTGGGTGGTGGCCTGTCAATGGGCGGCACCCAGTACAATTTAAAAA
1 AAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAA
8422202 ATATTATTTT
Statistics
Matches: 145, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
105 10 0.07
106 42 0.29
107 2 0.01
111 2 0.01
112 41 0.28
113 48 0.33
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (105 bp):
AAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAATCCTTTTT
TTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAAAAT
Found at i:8422175 original size:112 final size:111
Alignment explanation
Indices: 8421926--8422202 Score: 345
Period size: 112 Copynumber: 2.5 Consensus size: 111
8421916 AAGAAAAACG
**
8421926 AAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA-TT-----AAAAAT
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGG-CGGCACCCAGTACAAATTTAAAAAAAAAAT
* * *
8421985 TTTTTTTTTTGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAT
65 CTTTTTTTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATAAT
* *
8422032 AAAAAAAATTTGTTGGGTGCTGGCCTGTCAATGGCAGGCACACAGTACAAATTTAAAAAAAAAAT
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGC-GGCACCCAGTACAAATTTAAAAAAAAAAT
* *
8422097 CCTTTTTTTTCGTGTCAAAATCAGATATCAGTTTACGAAAAAAA-ATT
65 -CTTTTTTTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATAAT
** * *
8422144 TTAAAAATTTTTTTGGGTGGTGGCCTGTCAATGGGCGGCACCCAGTAC-AATTTAAAAAA
1 AAAAAAAATTTTTTGGGTGCTGGCCTGTCAAT-GGCGGCACCCAGTACAAATTTAAAAAA
8422203 TATTATTTTT
Statistics
Matches: 147, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
105 1 0.01
106 45 0.31
107 2 0.01
111 11 0.07
112 46 0.31
113 42 0.29
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (111 bp):
AAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCGGCACCCAGTACAAATTTAAAAAAAAAATC
TTTTTTTTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATAAT
Found at i:8422527 original size:114 final size:110
Alignment explanation
Indices: 8422321--8422638 Score: 423
Period size: 111 Copynumber: 2.9 Consensus size: 110
8422311 TGATACAAAT
* *
8422321 TTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAATTTTTTTT-ATTTT
1 TTTTTTTAAAATTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAATTTTTTTTAATTTT
*
8422384 TTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAAAATATA
66 TTTCGTATACTGATATCTGATTTTGACACG-AAAAAAAGAAAAA-A-A
8422432 TTTTTTTAAAATTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTT
1 TTTTTTTAAAATTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAA-TTTTTTTTAATTT
8422497 TTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAGAAAAAAA
65 TTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAGAAAAAAA
* * * *
8422543 ---TTTAAAAATTTGTACTGGGAG-CGAGCCATTGACAGGCCAGCACCCCAAAAAAATGTTTTTA
1 TTTTTTTAAAA-TTGTACTGGGTGCCGA-CCATTGACAGGCCAGCA-CCC---AAAATTTTTTTT
* *
8422604 AATTTTTTTTGTATACTGATATCTAATTTTGACAC
60 AATTTTTTTCGTATACTGATATCTGATTTTGACAC
8422639 AATTTTTTTT
Statistics
Matches: 189, Mismatches: 9, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
108 10 0.05
109 28 0.15
110 3 0.02
111 46 0.24
112 43 0.23
113 25 0.13
114 34 0.18
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (110 bp):
TTTTTTTAAAATTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAATTTTTTTTAATTTT
TTTCGTATACTGATATCTGATTTTGACACGAAAAAAAGAAAAAAA
Found at i:8423667 original size:43 final size:43
Alignment explanation
Indices: 8423613--8423718 Score: 140
Period size: 50 Copynumber: 2.3 Consensus size: 43
8423603 TACCACTTAT
*
8423613 CACTTGTCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTAC
1 CACTTATCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTAC
8423656 CACTTATCACTTGTCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTAC
1 CAC-T-T-A----TCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTAC
8423706 CACTTATCACTTG
1 CACTTATCACTTG
8423719 CCACTTGTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
43 10 0.18
44 1 0.02
45 1 0.02
47 1 0.02
48 1 0.02
49 1 0.02
50 40 0.73
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (43 bp):
CACTTATCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTAC
Found at i:8423670 original size:50 final size:50
Alignment explanation
Indices: 8423507--8423780 Score: 413
Period size: 51 Copynumber: 5.3 Consensus size: 50
8423497 CGGATCATAT
*
8423507 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCT-AAGCTACCAC
* * *
8423558 TTATCACTTCTCACTTGTCACTGATCAGATAAGTGTAACTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCT-AAGCTACCAC
*
8423609 TTATCACTTGTCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCTAAGCTACCAC
*
8423659 TTATCACTTGTCACTTGTCACCGATTAGATAAGTGTAGCTAAGCTACCAC
1 TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCTAAGCTACCAC
8423709 TTATCACTTGCCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCTAAGCTACCAC
1 -T-T-A--T--CACTTGTCACTTGTCACCGATCAGATAAGTGTAGCTAAGCTACCAC
8423766 TTATCACTTGTCACT
1 TTATCACTTGTCACT
8423781 GATCAGAAGT
Statistics
Matches: 209, Mismatches: 7, Indels: 15
0.90 0.03 0.06
Matches are distributed among these distances:
50 71 0.34
51 86 0.41
52 2 0.01
53 1 0.00
54 1 0.00
55 2 0.01
56 1 0.00
57 45 0.22
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (50 bp):
TTATCACTTGTCACTTGTCACCGATCAGATAAGTGTAGCTAAGCTACCAC
Found at i:8430877 original size:21 final size:21
Alignment explanation
Indices: 8430851--8430936 Score: 91
Period size: 21 Copynumber: 4.1 Consensus size: 21
8430841 TAAACGGAAA
8430851 CTCATAAGGGTTGAACAGAAG
1 CTCATAAGGGTTGAACAGAAG
8430872 CTCATAAGGGTTGAACAGAAG
1 CTCATAAGGGTTGAACAGAAG
* * * ** *
8430893 CTTATAAGAGATGAATGGAAA
1 CTCATAAGGGTTGAACAGAAG
* * *
8430914 CCCATAAGGGTTAAACTGAAG
1 CTCATAAGGGTTGAACAGAAG
8430935 CT
1 CT
8430937 TAAAAGAGCA
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.21
Consensus pattern (21 bp):
CTCATAAGGGTTGAACAGAAG
Found at i:8430900 original size:42 final size:42
Alignment explanation
Indices: 8430862--8430970 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
8430852 TCATAAGGGT
* * *
8430862 TGAACAGAAGCTCATAAGGGTTGAACAGAAGCTTATAAGAGA
1 TGAACAGAAACCCATAAGGGTTAAACAGAAGCTTATAAGAGA
** * *
8430904 TGAATGGAAACCCATAAGGGTTAAACTGAAGCTTAAAAGAGCA
1 TGAACAGAAACCCATAAGGGTTAAACAGAAGCTTATAAGAG-A
* *
8430947 -GAACTGAAACCCATTAGGGTTAAA
1 TGAACAGAAACCCATAAGGGTTAAA
8430971 TGGAAACTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (42 bp):
TGAACAGAAACCCATAAGGGTTAAACAGAAGCTTATAAGAGA
Found at i:8436562 original size:19 final size:18
Alignment explanation
Indices: 8436538--8436573 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
8436528 TAATACATTC
8436538 AAAAAATATTCAAAAAATT
1 AAAAAATATT-AAAAAATT
8436557 AAAAAATATTAAAAAAT
1 AAAAAATATTAAAAAAT
8436574 ATGTCATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
AAAAAATATTAAAAAATT
Found at i:8436573 original size:10 final size:10
Alignment explanation
Indices: 8436538--8436575 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
8436528 TAATACATTC
8436538 AAAAAATATT
1 AAAAAATATT
*
8436548 CAAAAA-ATT
1 AAAAAATATT
8436557 AAAAAATATT
1 AAAAAATATT
8436567 AAAAAATAT
1 AAAAAATAT
8436576 GTCATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAAATATT
Found at i:8439081 original size:13 final size:13
Alignment explanation
Indices: 8439063--8439087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8439053 ATAAGTAATT
8439063 AATTAATTTTTAA
1 AATTAATTTTTAA
8439076 AATTAATTTTTA
1 AATTAATTTTTA
8439088 TTAACTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTAATTTTTAA
Found at i:8448277 original size:19 final size:19
Alignment explanation
Indices: 8448239--8448280 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8448229 ATTATTAGAA
* *
8448239 ATTTTGATTTTTTTGGTAT
1 ATTTTGATATTTTTCGTAT
*
8448258 ATTTTGATATTTTTCTTAT
1 ATTTTGATATTTTTCGTAT
8448277 ATTT
1 ATTT
8448281 AGAAAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.02, G:0.10, T:0.69
Consensus pattern (19 bp):
ATTTTGATATTTTTCGTAT
Found at i:8451556 original size:27 final size:29
Alignment explanation
Indices: 8451526--8451590 Score: 107
Period size: 27 Copynumber: 2.3 Consensus size: 29
8451516 ATATTTGCAA
8451526 ATCAGTGGTGGCTTGTCCACAAAA-T-TT
1 ATCAGTGGTGGCTTGTCCACAAAAGTGTT
8451553 ATCAGTGGTGGCTTGTCCACAAAAGTGTT
1 ATCAGTGGTGGCTTGTCCACAAAAGTGTT
*
8451582 ATTAGTGGT
1 ATCAGTGGT
8451591 AGTTTATCTG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 24 0.69
28 1 0.03
29 10 0.29
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (29 bp):
ATCAGTGGTGGCTTGTCCACAAAAGTGTT
Found at i:8452411 original size:16 final size:16
Alignment explanation
Indices: 8452392--8452422 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8452382 CTGTAGATTG
8452392 TGAAAACTATAGACTT
1 TGAAAACTATAGACTT
*
8452408 TGAAAACTCTAGACT
1 TGAAAACTATAGACT
8452423 CTGTAGTCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (16 bp):
TGAAAACTATAGACTT
Found at i:8453193 original size:9 final size:9
Alignment explanation
Indices: 8453164--8453193 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8453154 TGAATTTTAC
8453164 AATTCAAAT
1 AATTCAAAT
*
8453173 AACTCAAAT
1 AATTCAAAT
8453182 AATTCAAAT
1 AATTCAAAT
8453191 AAT
1 AAT
8453194 AGATTGATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTCAAAT
Found at i:8453354 original size:21 final size:20
Alignment explanation
Indices: 8453328--8453366 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
8453318 AAAATTAATA
8453328 TTTTAAAAAAGTTTATAAATT
1 TTTTAAAAAAGTTT-TAAATT
8453349 TTTTAAAAAAGTTTTAAA
1 TTTTAAAAAAGTTTTAAA
8453367 AAATATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
TTTTAAAAAAGTTTTAAATT
Found at i:8453363 original size:11 final size:11
Alignment explanation
Indices: 8453328--8453369 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
8453318 AAAATTAATA
8453328 TTTTAAAAAAG
1 TTTTAAAAAAG
* **
8453339 -TTTATAAATT
1 TTTTAAAAAAG
8453349 TTTTAAAAAAG
1 TTTTAAAAAAG
8453360 TTTTAAAAAA
1 TTTTAAAAAA
8453370 TATATAAAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (11 bp):
TTTTAAAAAAG
Found at i:8457668 original size:21 final size:21
Alignment explanation
Indices: 8457644--8457720 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
8457634 TAAATTTATT
*
8457644 ATAAAATAAATGATAAAGAAA
1 ATAAAAAAAATGATAAAGAAA
* **
8457665 ATAAAAAAAATAAAGATAGGAGAGC
1 ATAAAAAAAAT---GATA-AAGAAA
*
8457690 A-AAAATAAATGATAAAGAAA
1 ATAAAAAAAATGATAAAGAAA
8457710 ATAAAAAAAAT
1 ATAAAAAAAAT
8457721 AAAGATAGGA
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 4 0.10
21 22 0.52
24 12 0.29
25 4 0.10
ACGTcount: A:0.71, C:0.01, G:0.12, T:0.16
Consensus pattern (21 bp):
ATAAAAAAAATGATAAAGAAA
Found at i:8457696 original size:45 final size:45
Alignment explanation
Indices: 8457646--8457738 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
8457636 AATTTATTAT
8457646 AAAATAAATGATAAAGAAAATAAAAAAAATAAAGATAGGAGAGCA
1 AAAATAAATGATAAAGAAAATAAAAAAAATAAAGATAGGAGAGCA
8457691 AAAATAAATGATAAAGAAAATAAAAAAAATAAAGATAGGAGAGCA
1 AAAATAAATGATAAAGAAAATAAAAAAAATAAAGATAGGAGAGCA
8457736 AAA
1 AAA
8457739 GAGAAGCATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.70, C:0.02, G:0.15, T:0.13
Consensus pattern (45 bp):
AAAATAAATGATAAAGAAAATAAAAAAAATAAAGATAGGAGAGCA
Found at i:8458669 original size:178 final size:178
Alignment explanation
Indices: 8458443--8458972 Score: 961
Period size: 178 Copynumber: 3.0 Consensus size: 178
8458433 CTAACCTCTA
*
8458443 ACACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGCGGAGTTATTTCATAT
1 ACACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGCGGAGTTATTTCATAC
8458508 ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
66 ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
*
8458573 ACTCAAAGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCAACAT
131 ACTCAAGGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCAACAT
* * *
8458621 ATACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGAGAAGTTATTTCATAC
1 ACACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGCGGAGTTATTTCATAC
*
8458686 ACAAAATATAAACATATGAGCTTATAAAATATCAAATGAAAGGTTTGCATGTCAACAGTAAAAAC
66 ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
* * *
8458751 ACTCAAGGGTTCGTAAACAATAAATAACATAAGTTTGCATAGTAGCAT
131 ACTCAAGGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCAACAT
* *
8458799 ACACACCACTTACTAATGACAGATAATGTGTTTAAGTATAACATTGCAGCAGAGTTATTTCATAC
1 ACACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGCGGAGTTATTTCATAC
8458864 ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
66 ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
8458929 ACTCAAGGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCA
131 ACTCAAGGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCA
8458973 GCATCATGAG
Statistics
Matches: 335, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
178 335 1.00
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (178 bp):
ACACACCACTTACTAACGACAGATAATGTGTTTAAGTATAACATTGCAGCGGAGTTATTTCATAC
ACAAAATATAAACATATGAGCTTATAAAATATCAAAGGAAAGGTTTGCATGTCAACAGTAAAAAC
ACTCAAGGGTTCGCAAACAATAAATAACATAAGTTTGCATAGCAACAT
Found at i:8461955 original size:19 final size:19
Alignment explanation
Indices: 8461931--8461998 Score: 100
Period size: 19 Copynumber: 3.5 Consensus size: 19
8461921 ATACACCAAC
8461931 AGAAGCTCGAAAGCTGAAT
1 AGAAGCTCGAAAGCTGAAT
*
8461950 AGAAGCTCGAAAGCTGAAC
1 AGAAGCTCGAAAGCTGAAT
*
8461969 AGAAGCTCGTAAGAGCTGGAT
1 AGAAGCTCG-AA-AGCTGAAT
8461990 AGAAGCTCG
1 AGAAGCTCG
8461999 TAAGAGCTGG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 27 0.61
20 2 0.05
21 15 0.34
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (19 bp):
AGAAGCTCGAAAGCTGAAT
Found at i:8461993 original size:21 final size:19
Alignment explanation
Indices: 8461928--8462014 Score: 102
Period size: 21 Copynumber: 4.4 Consensus size: 19
8461918 TGAATACACC
8461928 AACAGAAGCTCGAAAGCTG
1 AACAGAAGCTCGAAAGCTG
*
8461947 AATAGAAGCTCGAAAGCTG
1 AACAGAAGCTCGAAAGCTG
8461966 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCG-AA-AGCTG
* *
8461987 GATAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCG-AA-AGCTG
*
8462008 GACAGAA
1 AACAGAA
8462015 AGTAAAACAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
19 29 0.48
20 2 0.03
21 30 0.49
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (19 bp):
AACAGAAGCTCGAAAGCTG
Found at i:8461994 original size:40 final size:40
Alignment explanation
Indices: 8461928--8462014 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
8461918 TGAATACACC
8461928 AACAGAAGCTCGAAAGCTGAATAGAAGCTCG-AA-AGCTG
1 AACAGAAGCTCGAAAGCTGAATAGAAGCTCGTAAGAGCTG
*
8461966 AACAGAAGCTCGTAAGAGCTGGATAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCG-AA-AGCTGAATAGAAGCTCGTAAGAGCTG
*
8462008 GACAGAA
1 AACAGAA
8462015 AGTAAAACAT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
38 12 0.28
39 2 0.05
40 16 0.37
41 2 0.05
42 11 0.26
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (40 bp):
AACAGAAGCTCGAAAGCTGAATAGAAGCTCGTAAGAGCTG
Found at i:8464697 original size:42 final size:44
Alignment explanation
Indices: 8464595--8464703 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
8464585 AATGCGATAT
* * *
8464595 CGTGTAAGACCAAGTCTGGGACGTTGGCATCGATTTAAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATAAGATTTA
* *
8464639 CGTGTAAGACCATGTCTGGGACATTGGCGTCG-TATATGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATAAGATTTA
* *
8464681 CGTGTAAGACCCTGTCTAGGACA
1 CGTGTAAGACCATGTCTGGGACA
8464704 GTGACATCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 24 0.41
43 5 0.09
44 29 0.50
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATAAGATTTA
Found at i:8466310 original size:17 final size:17
Alignment explanation
Indices: 8466288--8466330 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
8466278 GGGTCGCTTA
*
8466288 AATTAAATTAATTATAG-
1 AATTAAATTAATT-CAGT
*
8466305 AATTAATTTAATTCAGT
1 AATTAAATTAATTCAGT
8466322 AATTAAATT
1 AATTAAATT
8466331 TCCAACACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (17 bp):
AATTAAATTAATTCAGT
Found at i:8472777 original size:39 final size:39
Alignment explanation
Indices: 8472609--8472774 Score: 251
Period size: 39 Copynumber: 4.3 Consensus size: 39
8472599 GTATTGCGAT
8472609 ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
1 ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
* * *
8472648 ACATATGCTTGAATGTTATGTGATTACATAAGTATTGTG
1 ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
* *
8472687 ATATATGCTTGAACGTTATGTAATTATATGAGTATTGTG
1 ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
* * * *
8472726 ATATATGCTTAAATGTTATGTGGTTATATGTGTAATGTG
1 ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
8472765 ATATATGCTT
1 ATATATGCTT
8472775 AAAAGTGAAC
Statistics
Matches: 113, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.45
Consensus pattern (39 bp):
ATATATGCTTGAATGTTATGTGATTATATGAGTATTGTG
Found at i:8474183 original size:22 final size:22
Alignment explanation
Indices: 8474157--8474201 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8474147 AGATCAACAC
8474157 AAATAT-AATCACATACATATCA
1 AAATATCAATCACAT-CATATCA
**
8474179 AAATATCAATTTCATCATATCA
1 AAATATCAATCACATCATATCA
8474201 A
1 A
8474202 TCATCATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATATCAATCACATCATATCA
Found at i:8474394 original size:22 final size:22
Alignment explanation
Indices: 8474369--8474417 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
8474359 GGACAAGCTA
*
8474369 CCACTGATTTGTAGATAAACTG
1 CCACTGATTTGCAGATAAACTG
8474391 CCACTGATTTGCAGATAAACTG
1 CCACTGATTTGCAGATAAACTG
8474413 CCACT
1 CCACT
8474418 AATAACACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (22 bp):
CCACTGATTTGCAGATAAACTG
Found at i:8479211 original size:6 final size:6
Alignment explanation
Indices: 8479200--8479231 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8479190 TTCATTGTGA
8479200 TAGTGC TAGTGC TAGTGC TAGTGC TAGTGC TA
1 TAGTGC TAGTGC TAGTGC TAGTGC TAGTGC TA
8479232 AGCTGCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (6 bp):
TAGTGC
Found at i:8482915 original size:3 final size:3
Alignment explanation
Indices: 8482907--8482950 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
8482897 ATCAAAGCAA
*
8482907 AAG AAG AAG AAG AAG AAG CAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
8482951 AGAAACTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8486658 original size:28 final size:28
Alignment explanation
Indices: 8486627--8486756 Score: 127
Period size: 28 Copynumber: 4.6 Consensus size: 28
8486617 GAATATATTT
8486627 TGTGGCGAACTCTGAAAAAAATAGCCTG
1 TGTGGCGAACTCTGAAAAAAATAGCCTG
* * *
8486655 TGTGGCAAAC-CATGAAAAAAATAACCTA
1 TGTGGCGAACTC-TGAAAAAAATAGCCTG
* * * *
8486683 TGTGTCGAACTATGAAAAGAATAGCTTG
1 TGTGGCGAACTCTGAAAAAAATAGCCTG
** * * *
8486711 TGTGGTAAAACTTTGAAAAGAATAGCCCG
1 TGTGG-CGAACTCTGAAAAAAATAGCCTG
8486740 TGTGGCGAACTCTGAAA
1 TGTGGCGAACTCTGAAA
8486757 GGGATGCCTT
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.01
28 56 0.70
29 23 0.29
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (28 bp):
TGTGGCGAACTCTGAAAAAAATAGCCTG
Found at i:8486692 original size:56 final size:57
Alignment explanation
Indices: 8486627--8486756 Score: 154
Period size: 57 Copynumber: 2.3 Consensus size: 57
8486617 GAATATATTT
* *
8486627 TGTGGCGAACTCTGAAAAAAATAGCCTGTGTGG-CAAACCATGAAAAAAATAACCTA
1 TGTGGCGAACTCTGAAAAAAATAGCCTGTGTGGTAAAACCATGAAAAAAATAACCCA
* * * * ** * * *
8486683 TGTGTCGAACTATGAAAAGAATAGCTTGTGTGGTAAAACTTTGAAAAGAATAGCCCG
1 TGTGGCGAACTCTGAAAAAAATAGCCTGTGTGGTAAAACCATGAAAAAAATAACCCA
8486740 TGTGGCGAACTCTGAAA
1 TGTGGCGAACTCTGAAA
8486757 GGGATGCCTT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
56 29 0.48
57 31 0.52
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (57 bp):
TGTGGCGAACTCTGAAAAAAATAGCCTGTGTGGTAAAACCATGAAAAAAATAACCCA
Found at i:8488538 original size:34 final size:34
Alignment explanation
Indices: 8488495--8488612 Score: 146
Period size: 34 Copynumber: 3.5 Consensus size: 34
8488485 ACATATACGA
* * * *
8488495 ATATCATATCAGAATGTCACATTACCAGAAACAT
1 ATATCAGATCAGAATGTCATATTTCCAAAAACAT
* *
8488529 ATATCATATCAAAATGTCATATTTCCAAAAACAT
1 ATATCAGATCAGAATGTCATATTTCCAAAAACAT
* * *
8488563 ATATCAGATTAGAATGTCATATTTTCATAAACAT
1 ATATCAGATCAGAATGTCATATTTCCAAAAACAT
*
8488597 ATATTAGATCAGAATG
1 ATATCAGATCAGAATG
8488613 CTATATCAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 73 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.32
Consensus pattern (34 bp):
ATATCAGATCAGAATGTCATATTTCCAAAAACAT
Found at i:8500910 original size:37 final size:37
Alignment explanation
Indices: 8500853--8501004 Score: 173
Period size: 37 Copynumber: 3.9 Consensus size: 37
8500843 TATGATCAAT
*
8500853 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
8500888 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
8500925 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCAC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC-----C-A-C-C
*
8500970 TTATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 -TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
8501005 GAAGCTATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
35 6 0.06
36 4 0.04
37 54 0.54
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 32 0.32
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:8500988 original size:46 final size:46
Alignment explanation
Indices: 8500921--8501370 Score: 515
Period size: 46 Copynumber: 9.6 Consensus size: 46
8500911 TAAGTGTAGC
**
8500921 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8500967 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
8501013 CACTTATCACTTT-TCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCACTTTGT--C---T--CTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8501065 CACTTATCACTTTGTTTCTTGATCAGATAAGTGT------AGC---
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
**
8501102 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8501148 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8501194 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8501246 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** *
8501292 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8501344 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCTCTTGATCAGA
8501371 AGTACTCAAA
Statistics
Matches: 357, Mismatches: 18, Indels: 58
0.82 0.04 0.13
Matches are distributed among these distances:
37 33 0.09
40 3 0.01
43 3 0.01
45 1 0.00
46 185 0.52
47 1 0.00
48 2 0.01
49 2 0.01
50 2 0.01
52 124 0.35
53 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8501044 original size:52 final size:53
Alignment explanation
Indices: 8500964--8501077 Score: 185
Period size: 52 Copynumber: 2.2 Consensus size: 53
8500954 TAGCTAAAGC
* **
8500964 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTTGTAACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8501017 TATCACTTTTCAC-TTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTTGTAACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8501069 TATCACTTT
1 TATCACTTT
8501078 GTTTCTTGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 45 0.79
53 12 0.21
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (53 bp):
TATCACTTTTCACTTTGTAACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8501085 original size:98 final size:98
Alignment explanation
Indices: 8500921--8501370 Score: 651
Period size: 98 Copynumber: 4.7 Consensus size: 98
8500911 TAAGTGTAGC
* *
8500921 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
8500986 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* ** *
8501020 CACTTTTCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTTTCTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
*
8501085 GATCAGATAAG--T----GTAGC---CACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
8501109 CAC---T---TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
8501168 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
** *
8501201 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
*
8501266 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
8501299 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
8501364 GATCAGA
66 GATCAGA
8501371 AGTACTCAAA
Statistics
Matches: 314, Mismatches: 22, Indels: 31
0.86 0.06 0.08
Matches are distributed among these distances:
83 61 0.19
85 1 0.00
86 1 0.00
89 14 0.04
92 14 0.04
95 1 0.00
96 1 0.00
98 212 0.68
99 9 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8501115 original size:37 final size:37
Alignment explanation
Indices: 8501065--8501185 Score: 143
Period size: 37 Copynumber: 3.0 Consensus size: 37
8501055 CCGAAGCTAT
*
8501065 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8501102 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
8501145 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8501185 C
1 C
8501186 GAAGCTATCA
Statistics
Matches: 73, Mismatches: 2, Indels: 18
0.78 0.02 0.19
Matches are distributed among these distances:
37 30 0.41
39 2 0.03
40 4 0.05
41 1 0.01
42 1 0.01
43 3 0.04
44 2 0.03
46 30 0.41
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:8501161 original size:181 final size:181
Alignment explanation
Indices: 8500888--8501370 Score: 768
Period size: 181 Copynumber: 2.6 Consensus size: 181
8500878 TGTAGCCACC
8500888 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGT
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGT
8500953 GTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTT
66 GTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTT
8501018 ATCACTTTTCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
131 ATCACTTTTCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8501069 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGT
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGT
8501134 GTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTT
66 GTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTT
*
8501199 ATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
131 ATCACTTTTCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
** * *
8501250 TATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCA
1 TATCACTTTGTTTCTTGATCAGATAAGTGTAG-C----C----ACTTATCAC--T----TTGTCT
* *
8501315 CTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
51 CTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGA
8501371 AGTACTCAAA
Statistics
Matches: 280, Mismatches: 7, Indels: 15
0.93 0.02 0.05
Matches are distributed among these distances:
181 209 0.75
182 1 0.00
186 1 0.00
190 9 0.03
192 1 0.00
196 59 0.21
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (181 bp):
TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGT
GTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTT
ATCACTTTTCACTTGTAACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:8501221 original size:52 final size:52
Alignment explanation
Indices: 8501145--8501364 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8501135 TAGCTAAAGC
* *
8501145 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8501198 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8501250 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8501296 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8501348 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8501365 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8504378 original size:18 final size:18
Alignment explanation
Indices: 8504351--8504443 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
8504341 CCCAACTACT
*
8504351 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* * *
8504369 GTATATGTGAAAAGTGCC
1 GTATACGTGAATAGTACC
* *
8504387 GTATACTTGAATAGTACT
1 GTATACGTGAATAGTACC
**
8504405 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
8504423 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
8504441 GTA
1 GTA
8504444 AACGGTCGTA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:8504403 original size:36 final size:36
Alignment explanation
Indices: 8504351--8504443 Score: 132
Period size: 36 Copynumber: 2.6 Consensus size: 36
8504341 CCCAACTACT
* *
8504351 GTATACGTGAACAGTACCGTATATGTGAAAAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAAAAGTGCC
* * * *
8504387 GTATACTTGAATAGTACTGTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACCGTATACGTGAAAAGTGCC
8504423 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
8504444 AACGGTCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAAAAGTGCC
Found at i:8514500 original size:37 final size:37
Alignment explanation
Indices: 8514439--8514584 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
8514429 TACGTATGAT
* *
8514439 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8514474 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8514511 CACTTATCACTTTGTTTCTTGATCAGATAAGTGCAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8514548 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8514585 TAAAGCTATC
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 90 0.88
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8514601 original size:46 final size:46
Alignment explanation
Indices: 8514548--8514862 Score: 378
Period size: 46 Copynumber: 6.6 Consensus size: 46
8514538 TAAGTGCAGC
* * **
8514548 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
8514594 CACTTATCACTTTGGCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
8514640 CACTTATCACTTTATTACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8514686 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8514738 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* * ** *
8514784 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8514836 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8514863 AGTACTCAAA
Statistics
Matches: 236, Mismatches: 21, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
46 151 0.64
48 2 0.01
50 2 0.01
52 81 0.34
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:8514720 original size:52 final size:52
Alignment explanation
Indices: 8514656--8514848 Score: 290
Period size: 52 Copynumber: 3.8 Consensus size: 52
8514646 TCACTTTATT
*
8514656 ACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTC
1 ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTC
8514708 ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTT--A----TC
1 ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTC
*
8514754 ACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTC
1 ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTC
* ** *
8514806 ACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTT
8514849 ATCACTTGAT
Statistics
Matches: 128, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
46 44 0.34
48 1 0.01
50 1 0.01
52 82 0.64
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (52 bp):
ACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTC
Found at i:8514744 original size:98 final size:98
Alignment explanation
Indices: 8514548--8514862 Score: 471
Period size: 98 Copynumber: 3.3 Consensus size: 98
8514538 TAAGTGCAGC
* * * ** *
8514548 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC--T----TT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
* *
8514607 GGCTCTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8514640 CACTTATCACTTTATTACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
8514705 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
8514738 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
* ** *
8514803 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
8514836 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
8514863 AGTACTCAAA
Statistics
Matches: 203, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
92 49 0.24
94 1 0.00
98 153 0.75
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:8514854 original size:144 final size:138
Alignment explanation
Indices: 8514547--8514862 Score: 398
Period size: 144 Copynumber: 2.2 Consensus size: 138
8514537 ATAAGTGCAG
* * * * * *
8514547 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGGCTC
1 CCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTAGCAC
8514612 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATTACTTGATCAGATAAGTATAGC
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATTACTTGATCAGATAAGTATAGC
*
8514677 CGAAGCTA
131 CAAAGCTA
** *
8514685 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTT
1 CCACTTATCACTTT--A----TCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTT
* *
8514750 TATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCA
60 TAGCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTT--A--T-T-ACTTGATCA
* *
8514815 GATAAGTGTAGCTAAAGCTA
119 GATAAGTATAGCCAAAGCTA
8514835 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTATCACTTGATCAGA
8514863 AGTACTCAAA
Statistics
Matches: 150, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
138 12 0.08
144 96 0.64
146 1 0.01
148 2 0.01
149 1 0.01
150 38 0.25
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (138 bp):
CCACTTATCACTTTATCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTAGCAC
TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATTACTTGATCAGATAAGTATAGC
CAAAGCTA
Found at i:8527617 original size:28 final size:28
Alignment explanation
Indices: 8527550--8527619 Score: 68
Period size: 29 Copynumber: 2.5 Consensus size: 28
8527540 TAATTAATTT
* *
8527550 TTAAATTTTAAAAATATAAAAAAAATAT
1 TTAAATGTTAAAAATATAAAAAAAATAA
* ** * *
8527578 TTAAAAGATTAAAGTTATTAAAAAATTAA
1 TTAAATG-TTAAAAATATAAAAAAAATAA
8527607 TTAAATGTTAAAA
1 TTAAATGTTAAAA
8527620 TGTCATCTAC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
28 10 0.31
29 22 0.69
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (28 bp):
TTAAATGTTAAAAATATAAAAAAAATAA
Found at i:8528389 original size:17 final size:17
Alignment explanation
Indices: 8528367--8528422 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
8528357 TACACCCCAA
8528367 ATTTTATTTTATAAAAT
1 ATTTTATTTTATAAAAT
* *
8528384 ATTTTATTTCATGAAAT
1 ATTTTATTTTATAAAAT
* *
8528401 ATTATCA-TTTAAAAAAT
1 ATT-TTATTTTATAAAAT
8528418 ATTTT
1 ATTTT
8528423 TGAATTAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 1 0.03
17 28 0.90
18 2 0.06
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTTTATTTTATAAAAT
Found at i:8529362 original size:18 final size:16
Alignment explanation
Indices: 8529334--8529386 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
8529324 AATTAGATAG
8529334 TTTT-GTTATTTTGTTA
1 TTTTAGTTATTTT-TTA
*
8529350 TTTTTATTTATTTATTTA
1 -TTTTAGTTATTT-TTTA
8529368 TTTTAGTTA-TTTTTA
1 TTTTAGTTATTTTTTA
8529383 TTTT
1 TTTT
8529387 TCTCTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 8 0.25
16 2 0.06
17 12 0.38
18 9 0.28
19 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (16 bp):
TTTTAGTTATTTTTTA
Found at i:8530146 original size:3 final size:3
Alignment explanation
Indices: 8530138--8530188 Score: 77
Period size: 3 Copynumber: 17.3 Consensus size: 3
8530128 TTTTAACTGT
* *
8530138 TTA TTA TTA CTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8530185 TTA T
1 TTA T
8530189 AACACAAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8533075 original size:21 final size:22
Alignment explanation
Indices: 8533035--8533081 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
8533025 CTCTGCTCAA
*
8533035 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
8533056 ACTCCACCTGCTGTGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
8533078 ACTC
1 ACTC
8533082 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:8538614 original size:27 final size:26
Alignment explanation
Indices: 8538561--8538633 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
8538551 ACAAAGTGTA
* * *
8538561 AAAACATTTTAAGTAATTAATTAATAT
1 AAAATATTTTAA-AAATTAATAAATAT
*
8538588 AAATTA-TTTATAAAATTAATAATATAT
1 AAAATATTTTA-AAAATTAATAA-ATAT
8538615 AAAATATTTTAAAAATTAA
1 AAAATATTTTAAAAATTAA
8538634 ATATAAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 12 0.32
27 22 0.58
28 4 0.11
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (26 bp):
AAAATATTTTAAAAATTAATAAATAT
Found at i:8538636 original size:25 final size:25
Alignment explanation
Indices: 8538561--8538644 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 25
8538551 ACAAAGTGTA
* * *
8538561 AAAACATTTTAAGTAATTAATTAATAT
1 AAAATATTTTAA-AAATTAAAT-ATAT
*
8538588 AAATTA-TTTATAAAATTAATAATATAT
1 AAAATATTTTA-AAAATT-A-AATATAT
8538615 AAAATATTTTAAAAATTAAATATA-
1 AAAATATTTTAAAAATTAAATATAT
8538639 AAAATA
1 AAAATA
8538645 AATGAGATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
24 6 0.12
25 6 0.12
26 9 0.19
27 21 0.44
28 6 0.12
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (25 bp):
AAAATATTTTAAAAATTAAATATAT
Found at i:8539289 original size:16 final size:17
Alignment explanation
Indices: 8539268--8539301 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
8539258 TGTTTAGGAC
8539268 TGCTATTTTT-AGTGTT
1 TGCTATTTTTAAGTGTT
8539284 TGCTATTTTTAAGTGTT
1 TGCTATTTTTAAGTGTT
8539301 T
1 T
8539302 TGTTATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.15, C:0.06, G:0.18, T:0.62
Consensus pattern (17 bp):
TGCTATTTTTAAGTGTT
Found at i:8543678 original size:17 final size:16
Alignment explanation
Indices: 8543633--8543679 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8543623 TTAGGACTCT
*
8543633 TATTTTTAGTGTGTAC
1 TATTTTTAGTGTTTAC
* *
8543649 TATTTTTAATGTTTGC
1 TATTTTTAGTGTTTAC
8543665 TATTTTTAGGTGTTT
1 TATTTTTA-GTGTTT
8543680 TGTTATTTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.17, C:0.04, G:0.17, T:0.62
Consensus pattern (16 bp):
TATTTTTAGTGTTTAC
Found at i:8547542 original size:24 final size:22
Alignment explanation
Indices: 8547515--8547570 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 22
8547505 AATTTCAAAA
8547515 ATAAAACATAATATAATATTTATT
1 ATAAAA-ATAA-ATAATATTTATT
*
8547539 ATAAAAATAAATATTATTTA--
1 ATAAAAATAAATAATATTTATT
*
8547559 ATTAAAATAAAT
1 ATAAAAATAAAT
8547571 TTTTTAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 11 0.37
22 9 0.30
23 4 0.13
24 6 0.20
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAAAATAAATAATATTTATT
Found at i:8547562 original size:23 final size:24
Alignment explanation
Indices: 8547515--8547558 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8547505 AATTTCAAAA
8547515 ATAAAACATAATATAATATTTATT
1 ATAAAACATAATATAATATTTATT
*
8547539 ATAAAA-ATAA-ATATTATTTA
1 ATAAAACATAATATAATATTTA
8547559 ATTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATAAAACATAATATAATATTTATT
Found at i:8547599 original size:22 final size:20
Alignment explanation
Indices: 8547562--8547614 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
8547552 TTATTTAATT
8547562 AAAATAAATTTTTTAAAG-G
1 AAAATAAATTTTTTAAAGTG
*
8547581 AAAATAATATTTATCTTAATGTG
1 AAAATAA-ATTT-T-TTAAAGTG
*
8547604 AAAATTAATTT
1 AAAATAAATTT
8547615 AATATTTTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 1 0.04
22 9 0.32
23 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAATAAATTTTTTAAAGTG
Found at i:8552152 original size:9 final size:9
Alignment explanation
Indices: 8552138--8552203 Score: 66
Period size: 9 Copynumber: 7.6 Consensus size: 9
8552128 AACTTTGGAT
8552138 CATAACTTA
1 CATAACTTA
8552147 CATAACTTA
1 CATAACTTA
8552156 CATAA--TA
1 CATAACTTA
*
8552163 CATAA-ATA
1 CATAACTTA
* * *
8552171 TATATCATA
1 CATAACTTA
8552180 TCATAACTTA
1 -CATAACTTA
8552190 CATAACTTA
1 CATAACTTA
8552199 CATAA
1 CATAA
8552204 AACTTTGGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 31 0.63
10 6 0.12
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:8552331 original size:7 final size:7
Alignment explanation
Indices: 8552319--8552343 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8552309 ACACCTATTA
8552319 GATACTT
1 GATACTT
8552326 GATACTT
1 GATACTT
8552333 GATACTT
1 GATACTT
8552340 GATA
1 GATA
8552344 TGTATTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:8556464 original size:33 final size:31
Alignment explanation
Indices: 8556422--8556604 Score: 114
Period size: 33 Copynumber: 5.7 Consensus size: 31
8556412 AAAATACGGT
*
8556422 GGAATCAGCACTTAGCAACCACCAATGATTTGG
1 GGAATCAGCACTTAGCAACC-CCAAT-ATTAGG
*
8556455 GGAATCAGCACTTAGCAATCCC----TT-GG
1 GGAATCAGCACTTAGCAACCCCAATATTAGG
* *
8556481 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACAG
1 GGAATCAGCACTTAGCAA--CCC--CA-A--T--ATTA-GG
*
8556522 TGGAATCAGCACTTAGCAACCACCAATGATTAGG
1 G-GAATCAGCACTTAGCAACC-CCAAT-ATTAGG
*
8556556 GGAATCAGCACTTAGCAACCCC----TTGGG
1 GGAATCAGCACTTAGCAACCCCAATATTAGG
8556583 GGAATCAGCACTTAGCAACCCC
1 GGAATCAGCACTTAGCAACCCC
8556605 CTTTATATTC
Statistics
Matches: 123, Mismatches: 10, Indels: 40
0.71 0.06 0.23
Matches are distributed among these distances:
26 20 0.16
27 28 0.23
28 2 0.02
30 1 0.01
32 4 0.03
33 38 0.31
34 1 0.01
35 3 0.02
36 1 0.01
38 1 0.01
39 3 0.02
40 2 0.02
41 2 0.02
42 17 0.14
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (31 bp):
GGAATCAGCACTTAGCAACCCCAATATTAGG
Found at i:8556541 original size:101 final size:102
Alignment explanation
Indices: 8556281--8556607 Score: 557
Period size: 101 Copynumber: 3.2 Consensus size: 102
8556271 ATCGGTGGAT
* * *
8556281 TCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACCACCAAT
1 TCAGCACTTAGCAACCCCCTTCACATTTAAA-ATACGGTGGAATCAGCACTTAGCAACCACCAAT
* *
8556346 GATTCGGGGAATCAACACTTAGCAACCCCTTGGGGGAA
65 GATTAGGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
*
8556384 TTAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAATG
1 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAATG
* *
8556449 ATTTGGGGAATCAGCACTTAGCAATCCCTT-GGGGAA
66 ATTAGGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
*
8556485 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACAGTGGAATCAGCACTTAGCAACCACCAATG
1 TCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAATG
8556550 ATTAGGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
66 ATTAGGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
8556587 TCAGCACTTAGCAACCCCCTT
1 TCAGCACTTAGCAACCCCCTT
8556608 TATATTCAAT
Statistics
Matches: 212, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
101 97 0.46
102 87 0.41
103 28 0.13
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (102 bp):
TCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAATG
ATTAGGGGAATCAGCACTTAGCAACCCCTTGGGGGAA
Found at i:8571529 original size:20 final size:19
Alignment explanation
Indices: 8571496--8571533 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
8571486 TTTTAATTTA
8571496 ATAATAATTAAAATATTTTT
1 ATAATAATTAAAAT-TTTTT
8571516 ATAATTAATT-AAATTTTT
1 ATAA-TAATTAAAATTTTT
8571534 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 8 0.47
21 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATAATAATTAAAATTTTTT
Found at i:8587484 original size:30 final size:30
Alignment explanation
Indices: 8587448--8587545 Score: 146
Period size: 30 Copynumber: 3.2 Consensus size: 30
8587438 GTTTTTTAAC
8587448 TTTTTTAATTTTAAAATA-TTTTAAAATACT
1 TTTTTTAATTTTAAAATATTTTTAAAATA-T
8587478 TTTTTTAATTTTAAAATACTTTTTTTAAAAT-T
1 TTTTTTAATTTTAAAATA---TTTTTAAAATAT
8587510 TTTTTTAATTTTAAAATATTTTTAAAATAT
1 TTTTTTAATTTTAAAATATTTTTAAAATAT
8587540 TTTTTT
1 TTTTTT
8587546 TTTTTTAATT
Statistics
Matches: 63, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
29 10 0.16
30 25 0.40
32 19 0.30
34 9 0.14
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTTTAATTTTAAAATATTTTTAAAATAT
Found at i:8587509 original size:22 final size:22
Alignment explanation
Indices: 8587456--8587511 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
8587446 ACTTTTTTAA
*
8587456 TTTTAAAATATTTTAAAATACTT
1 TTTTTAAA-ATTTTAAAATACTT
8587479 TTTTT--AATTTTAAAATACTT
1 TTTTTAAAATTTTAAAATACTT
8587499 TTTTTAAAATTTT
1 TTTTTAAAATTTT
8587512 TTTTAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 19 0.63
21 1 0.03
22 6 0.20
23 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTTAAAATTTTAAAATACTT
Found at i:8587512 original size:12 final size:13
Alignment explanation
Indices: 8587486--8587545 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 13
8587476 CTTTTTTTAA
8587486 TTTTAAAATACTTT
1 TTTTAAAATA-TTT
8587500 TTTTAAAAT-TTT
1 TTTTAAAATATTT
* *
8587512 TTTTAATTTTAAAATAT
1 TTTTAA----AATATTT
8587529 TTTTAAAATATTT
1 TTTTAAAATATTT
8587542 TTTT
1 TTTT
8587546 TTTTTTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
12 9 0.24
13 9 0.24
14 9 0.24
16 2 0.05
17 8 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTAAAATATTT
Found at i:8587532 original size:20 final size:20
Alignment explanation
Indices: 8587465--8587505 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8587455 ATTTTAAAAT
8587465 ATTTTAAAATACTTTTTTTA
1 ATTTTAAAATACTTTTTTTA
8587485 ATTTTAAAATACTTTTTTTA
1 ATTTTAAAATACTTTTTTTA
8587505 A
1 A
8587506 AATTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTAAAATACTTTTTTTA
Found at i:8587550 original size:18 final size:18
Alignment explanation
Indices: 8587465--8587532 Score: 63
Period size: 18 Copynumber: 3.8 Consensus size: 18
8587455 ATTTTAAAAT
8587465 ATTTTAAAATACTTTTTTTA
1 ATTTTAAAAT--TTTTTTTA
**
8587485 ATTTTAAAA--TACTTT-
1 ATTTTAAAATTTTTTTTA
8587500 -TTTTAAAATTTTTTTTA
1 ATTTTAAAATTTTTTTTA
8587517 ATTTTAAAATATTTTT
1 ATTTTAAAAT-TTTTT
8587533 AAAATATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
14 8 0.21
16 8 0.21
18 9 0.23
19 5 0.13
20 9 0.23
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTAAAATTTTTTTTA
Found at i:8587579 original size:28 final size:26
Alignment explanation
Indices: 8587527--8587580 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
8587517 ATTTTAAAAT
** *
8587527 ATTTTTAAAATATTTTTTTTTTTTTA
1 ATTTTTAAAATATTTTTGGTATTTTA
8587553 ATTTTTAAAATAAATTTTTGGTATTTTA
1 ATTTTTAAAAT--ATTTTTGGTATTTTA
8587581 TTAAAAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 11 0.48
28 12 0.52
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (26 bp):
ATTTTTAAAATATTTTTGGTATTTTA
Found at i:8590134 original size:9 final size:9
Alignment explanation
Indices: 8590120--8590159 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
8590110 TTTATTTAAA
8590120 AATTAACCG
1 AATTAACCG
8590129 AATTAACCG
1 AATTAACCG
*
8590138 AATTACCCG
1 AATTAACCG
8590147 AATTAACCG
1 AATTAACCG
8590156 AATT
1 AATT
8590160 GAATCACTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:8590302 original size:18 final size:18
Alignment explanation
Indices: 8590262--8590305 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8590252 AATTTTTATG
**
8590262 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
8590280 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
8590298 CTTGGGTT
1 ATTGGGTT
8590306 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:8595439 original size:3 final size:3
Alignment explanation
Indices: 8595416--8595458 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
8595406 TGTTATTAAG
* * *
8595416 TTA TTC TTA TAA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8595459 AATATACATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:8602139 original size:14 final size:15
Alignment explanation
Indices: 8602113--8602145 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8602103 TCCCAAACTG
8602113 GGAAGGACCTTATGT
1 GGAAGGACCTTATGT
*
8602128 GGAAGG-CCTTATTT
1 GGAAGGACCTTATGT
8602142 GGAA
1 GGAA
8602146 AAGCGTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (15 bp):
GGAAGGACCTTATGT
Found at i:8603622 original size:88 final size:88
Alignment explanation
Indices: 8603469--8604121 Score: 959
Period size: 88 Copynumber: 7.4 Consensus size: 88
8603459 GTGAAGATAA
* * * * * *
8603469 CAGATCTTACCTTCCTACACCGACAGCGAAACAGATTGAAGATACCAGCCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
8603534 GTAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * * *
8603557 CAAATCTTGTCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTACCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
8603622 GCAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * * *
8603645 CAGATCTTGCATTTCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCTTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
8603710 GTAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * *
8603733 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAATATACCAGCCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
8603798 GCAGCGGAGTAAGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * * * *
8603821 CAGATCTTGCTTTCCTGCACCGATAGCGAAGTAGATCGAAGACACCAGCCTTGCTTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
** * **
8603886 ACAGCGGAGAAATTTAAAAATTA-
66 GTAGCGGAGCAGGTTAAAAA-TAG
* * *
8603909 CAGATCTTGCCTTCCT-CAACCGACAGCGAAGCAGATCGAAAACACCAGTCTTGCTTCCCTGGGT
1 CAGATCTTGCCTTCCTGC-ACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGT
8603973 TGTAGCGGAGCAGGTTAAAAATAG
65 TGTAGCGGAGCAGGTTAAAAATAG
8603997 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
8604062 GTAGCGGAGTAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
8604085 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
8604122 AATGACCCCA
Statistics
Matches: 509, Mismatches: 52, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
87 3 0.01
88 503 0.99
89 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GTAGCGGAGCAGGTTAAAAATAG
Found at i:8603985 original size:43 final size:43
Alignment explanation
Indices: 8603933--8604067 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 43
8603923 CTCAACCGAC
8603933 AGCGAAGCAGATCGAAAACACCAGTCTTGCTTCCCTGGGTTGT
1 AGCGAAGCAGATCGAAAACACCAGTCTTGCTTCCCTGGGTTGT
* * ** * * **** *
8603976 AGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTT-CCTGCACCGAC
1 AGCGAAGCAGATCGAAAACACCAG-TCTTG-CTTCCCTGGGTTG-T
* * *
8604021 AGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGT
1 AGCGAAGCAGATCGAAAACACCAGTCTTGCTTCCCTGGGTTGT
8604064 AGCG
1 AGCG
8604068 GAGTAGGTTA
Statistics
Matches: 63, Mismatches: 25, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 24 0.38
44 19 0.30
45 20 0.32
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (43 bp):
AGCGAAGCAGATCGAAAACACCAGTCTTGCTTCCCTGGGTTGT
Found at i:8604005 original size:44 final size:45
Alignment explanation
Indices: 8603957--8604099 Score: 123
Period size: 44 Copynumber: 3.2 Consensus size: 45
8603947 AAAACACCAG
8603957 TCTTG-CTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
1 TCTTGCCTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
**** * * * ** * * *
8604001 TCTTGCCTT-CCTGCACCGACAGCGAAGCAGATCGAAGACACCAG-
1 TCTTGCCTTCCCTGGGTTG-TAGCGGAGCAGGTTAAAAATAGCAGA
* *
8604045 CCTTGCC-TCCCTGGGTTGTAGCGGAGTAGGTTAAAAATAGCAGA
1 TCTTGCCTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
8604089 TCTTGCCTTCC
1 TCTTGCCTTCC
8604100 TGCACCGACA
Statistics
Matches: 67, Mismatches: 27, Indels: 9
0.65 0.26 0.09
Matches are distributed among these distances:
43 17 0.25
44 27 0.40
45 23 0.34
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (45 bp):
TCTTGCCTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
Found at i:8604199 original size:44 final size:43
Alignment explanation
Indices: 8604134--8604255 Score: 165
Period size: 44 Copynumber: 2.8 Consensus size: 43
8604124 TGACCCCAAC
*
8604134 CCTATCTCCCTGGACAACAGTGGAATAGGTTGAAGATTGT-AAGT
1 CCTATCTCCCTGG-CAACAGTGGAATAGGTTGAAGATTATGAA-T
*
8604178 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAAT
1 CCTATCTCCCTGG-CAACAGTGGAATAGGTTGAAGATTATGAAT
* *
8604222 CTTATCTCCCTGAGCAACAGTGGAGTAGGTTGAA
1 CCTATCTCCCTG-GCAACAGTGGAATAGGTTGAA
8604256 AATAGCAGAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
44 67 0.96
45 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
CCTATCTCCCTGGCAACAGTGGAATAGGTTGAAGATTATGAAT
Found at i:8606277 original size:108 final size:107
Alignment explanation
Indices: 8605971--8606519 Score: 807
Period size: 107 Copynumber: 5.1 Consensus size: 107
8605961 GATTAAGATA
*
8605971 TAAAAGGATATTTGGCTATTTGGTCCGAA-G-GGAAATCGAGACCCAACACATTAGGGCACGTTT
1 TAAAAGGATATTTGGCTATTTGGT-CGAACGAGGAAATCGAAACCCAACACATTAGGGCACGTTT
*
8606034 TCTCGAATTTCCAAACGCAAAACATTGCCTCATTTTGAAATTT
65 TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
* * * ** *
8606077 TAAAAGGATATTCGGTTATTTGGTCGAACGAGGTAATCGAAACCCAGTACATTAGGGCACGTTTC
1 TAAAAGGATATTTGGCTATTTGGTCGAACGAGGAAATCGAAACCCAACACATTAGGGCACGTTTT
*
8606142 CTCGAATTTCCAAACACAAAACATTGCCTTATTTTGAAATTT
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
** *
8606184 TAAAAGGATATTTAACTATTTGGTCGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTTT
1 TAAAAGGATATTTGGCTATTTGGTCGAACGAGGAA-ATCGAAACCCAACACATTAGGGCACGTTT
* *
8606249 TCTCGAATTTCCAAATGCAAAACATTGCCTTATTTTGAAAATT
65 TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
* * * * *
8606292 TAAAAGGATATTCGGCTATTTGGTCGAACGAGGTAATCGAAACCTAGCACATTAGGGCACGTTTC
1 TAAAAGGATATTTGGCTATTTGGTCGAACGAGGAAATCGAAACCCAACACATTAGGGCACGTTTT
8606357 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
* * * *
8606399 TAAAAGGATATTTAGCTATTTGGTCGAACGAGAAAGATCGAAACCTAACACATTAGGGCACATTT
1 TAAAAGGATATTTGGCTATTTGGTCGAACGAGGAA-ATCGAAACCCAACACATTAGGGCACGTTT
8606464 TCTCGAACTTT-CAAACGCAAAACATTGCCTTATTTTGAAAATTT
65 TCTCGAA-TTTCCAAACGCAAAACATTGCCTTATTTTG-AAATTT
**
8606508 TTTAAGGATATT
1 TAAAAGGATATT
8606520 AATATGCATA
Statistics
Matches: 397, Mismatches: 40, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
105 4 0.01
106 23 0.06
107 196 0.49
108 155 0.39
109 19 0.05
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (107 bp):
TAAAAGGATATTTGGCTATTTGGTCGAACGAGGAAATCGAAACCCAACACATTAGGGCACGTTTT
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
Found at i:8606346 original size:215 final size:215
Alignment explanation
Indices: 8605971--8606507 Score: 911
Period size: 215 Copynumber: 2.5 Consensus size: 215
8605961 GATTAAGATA
* * *
8605971 TAAAAGGATATTTGGCTATTTGGTCCGAA-G-GGAA-ATCGAGACCCAACACATTAGGGCACGTT
1 TAAAAGGATATTTAGCTATTTGGT-CGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTT
* * *
8606033 TTCTCGAATTTCCAAACGCAAAACATTGCCTCATTTTGAAATTTTAAAAGGATATTCGGTTATTT
65 TTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTAAAAGGATATTCGGCTATTT
*
8606098 GGTCGAACGAGGTAATCGAAACCCAGTACATTAGGGCACGTTTCCTCGAATTTCCAAACACAAAA
130 GGTCGAACGAGGTAATCGAAACCCAGCACATTAGGGCACGTTTCCTCGAATTTCCAAACACAAAA
8606163 CATTGCCTTATTTTGAAATTT
195 CATTGCCTTATTTTGAAATTT
*
8606184 TAAAAGGATATTTAACTATTTGGTCGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTTT
1 TAAAAGGATATTTAGCTATTTGGTCGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTTT
*
8606249 TCTCGAATTTCCAAATGCAAAACATTGCCTTATTTTGAAAATTTAAAAGGATATTCGGCTATTTG
66 TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTAAAAGGATATTCGGCTATTTG
* *
8606314 GTCGAACGAGGTAATCGAAACCTAGCACATTAGGGCACGTTTCCTCGAATTTCCAAACGCAAAAC
131 GTCGAACGAGGTAATCGAAACCCAGCACATTAGGGCACGTTTCCTCGAATTTCCAAACACAAAAC
8606379 ATTGCCTTATTTTGAAATTT
196 ATTGCCTTATTTTGAAATTT
* *
8606399 TAAAAGGATATTTAGCTATTTGGTCGAACGAGAAAGATCGAAACCTAACACATTAGGGCACATTT
1 TAAAAGGATATTTAGCTATTTGGTCGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTTT
8606464 TCTCGAACTTT-CAAACGCAAAACATTGCCTTATTTTGAAAATTT
66 TCTCGAA-TTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTT
8606508 TTTAAGGATA
Statistics
Matches: 305, Mismatches: 15, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
212 4 0.01
213 23 0.08
214 3 0.01
215 272 0.89
216 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (215 bp):
TAAAAGGATATTTAGCTATTTGGTCGAACGAGAAAGATCGAAACCCAACACATTAGGGCACGTTT
TCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTAAAAGGATATTCGGCTATTTG
GTCGAACGAGGTAATCGAAACCCAGCACATTAGGGCACGTTTCCTCGAATTTCCAAACACAAAAC
ATTGCCTTATTTTGAAATTT
Found at i:8607103 original size:3 final size:3
Alignment explanation
Indices: 8607097--8607123 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8607087 AATAATAATA
8607097 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
8607124 TCATATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:8608814 original size:3 final size:3
Alignment explanation
Indices: 8608808--8608864 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
8608798 GTTATTTTTG
* *
8608808 TTA TTA -TA TTA TATA ATA CTA TTA TT- TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8608852 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
8608865 ACTTGTACAC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.08
3 42 0.88
4 2 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8608835 original size:29 final size:29
Alignment explanation
Indices: 8608803--8608862 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
8608793 CTGCTGTTAT
*
8608803 TTTTGTTATTA-TATTATATAATACTATTA
1 TTTTATTATTATTATTAT-TAATACTATTA
* *
8608832 TTTTATTATTATTATTATTATTATTATTA
1 TTTTATTATTATTATTATTAATACTATTA
8608861 TT
1 TT
8608863 ATACTTGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTTATTATTATTATTATTAATACTATTA
Found at i:8613150 original size:13 final size:13
Alignment explanation
Indices: 8613132--8613156 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8613122 CAATGCCAAA
8613132 AAAAAACAAAAAT
1 AAAAAACAAAAAT
8613145 AAAAAACAAAAA
1 AAAAAACAAAAA
8613157 AAATGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.04
Consensus pattern (13 bp):
AAAAAACAAAAAT
Found at i:8613165 original size:22 final size:21
Alignment explanation
Indices: 8613130--8613170 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8613120 TTCAATGCCA
8613130 AAAAAAAACAAAAATAAAAAAC
1 AAAAAAAACAAAAA-AAAAAAC
**
8613152 AAAAAAAATGAAAAAAAAA
1 AAAAAAAACAAAAAAAAAA
8613171 CCTCCACCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.88, C:0.05, G:0.02, T:0.05
Consensus pattern (21 bp):
AAAAAAAACAAAAAAAAAAAC
Found at i:8613165 original size:23 final size:22
Alignment explanation
Indices: 8613128--8613170 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8613118 GATTCAATGC
8613128 CAAAAAAAAACAAAAATAAAAAA
1 CAAAAAAAAACAAAAA-AAAAAA
**
8613151 CAAAAAAAATGAAAAAAAAA
1 CAAAAAAAAACAAAAAAAAA
8613171 CCTCCACCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.86, C:0.07, G:0.02, T:0.05
Consensus pattern (22 bp):
CAAAAAAAAACAAAAAAAAAAA
Found at i:8613678 original size:7 final size:7
Alignment explanation
Indices: 8613666--8613705 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
8613656 ATGATGTGAA
8613666 AAAAATG
1 AAAAATG
8613673 AAAAATG
1 AAAAATG
*
8613680 -AAAATA
1 AAAAATG
8613686 AAAAATG
1 AAAAATG
8613693 AAAAATAG
1 AAAAAT-G
8613701 AAAAA
1 AAAAA
8613706 GTAAAATGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
6 5 0.17
7 18 0.62
8 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:8613683 original size:13 final size:13
Alignment explanation
Indices: 8613667--8613696 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8613657 TGATGTGAAA
*
8613667 AAAATGAAAAATG
1 AAAATAAAAAATG
8613680 AAAATAAAAAATG
1 AAAATAAAAAATG
8613693 AAAA
1 AAAA
8613697 ATAGAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:8613690 original size:20 final size:21
Alignment explanation
Indices: 8613665--8613704 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
8613655 GATGATGTGA
8613665 AAAAAATGAAAAAT-GAAAAT
1 AAAAAATGAAAAATAGAAAAT
8613685 AAAAAATGAAAAATAGAAAA
1 AAAAAATGAAAAATAGAAAA
8613705 AGTAAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (21 bp):
AAAAAATGAAAAATAGAAAAT
Found at i:8615092 original size:50 final size:50
Alignment explanation
Indices: 8615038--8616117 Score: 517
Period size: 50 Copynumber: 21.6 Consensus size: 50
8615028 GTAGAGGAGC
** *
8615038 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * * * **** **
8615088 AGATTAAAGCCACAACGGCAGATCTTACTTCCCTGGCGGTGCAGCGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * *
8615138 AGATTGAAGTCACAACGGCAGATCTGATTTCCCCAACACCGCAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * * **** **
8615188 AGATTGAAGCCACAACGGCGGATCTTATTTCCCTGGCGGTGCAGCGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* ** *
8615238 AGATTGAAGTCACAACAGCAGATCTGGTTTCCTCGACAGCGCAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * ** * * * ** **
8615288 GGATTGAAGCCACAACGGTGGATCTTACTTT-CCTGGC-GATGCAATGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTA-TTTCCCCGACAG-CGCAATTAAAA
* ** *
8615338 AGATTGAAGTCATAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * * ** **
8615388 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACGGTGC-AGCAGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTA-AAA
* ** *
8615438 AGATTAAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * ** * * * ** **
8615488 AGATTGAAGCCACAACGGCGGATCTTACTTCCTTGGC-GATGCAGTGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAG-CGCAATTAAAA
* *
8615538 AGATTGAAGTCACAACGGCGGATCTTGTTTCCCCGACAGCGCAATT-AAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* ** ** * ** **
8615587 AGATTGAAGCCACAACGGCAGATCTTATTTCTCTGGGGATGCG--GTGGAGT
1 AGATTGAAGTCACAACGGCAGATCTTATTTC-CCCGACA-GCGCAATTAAAA
* * * * *
8615637 AGATTGAAGTCACAACAGCGGATC-TAGTTCCCCGACAGTGTAATT-AAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * ** ** ** **** **
8615685 AGATTAAAGCCACAACAGTAGATCTTACTTCCTTGATGGTACAGCGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
** * *
8615735 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCAACAGTGCAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * **** **
8615785 AGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCGGTGCAGCGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
**
8615835 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * * * * * ** **
8615885 GGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* ** * * *
8615935 AGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGATAGTGCAACTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
* * * * * * * * * *
8615985 GGATTAAAGCCACAACGACAGATCTTACTTCCCTGAC-GATGCAGTGGAGAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAG-CGCAAT-TAAAA
* * *** ** *
8616036 TGATTGAAGTTACAACGATGGATCTGGTTTCCCCGACAGCACAATTAAAA
1 AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
*
8616086 AGATTGAAG-CTACAACGGCGGATCTTATTTCC
1 AGATTGAAGTC-ACAACGGCAGATCTTATTTCC
8616118 TTAGCGGTGC
Statistics
Matches: 713, Mismatches: 298, Indels: 38
0.68 0.28 0.04
Matches are distributed among these distances:
47 2 0.00
48 24 0.03
49 55 0.08
50 588 0.82
51 43 0.06
52 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (50 bp):
AGATTGAAGTCACAACGGCAGATCTTATTTCCCCGACAGCGCAATTAAAA
Found at i:8615206 original size:100 final size:100
Alignment explanation
Indices: 8615033--8616129 Score: 1500
Period size: 100 Copynumber: 11.0 Consensus size: 100
8615023 GCGTTGTAGA
* *
8615033 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAAAGATTAAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
*
8615098 CACAACGGCAGATCTTACTTCCCTGGCGGTGCAGC
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* * *
8615133 GGAGCAGATTGAAGTCACAACGGCAGATCTGATTTCCCCAACACCGCAATTAAAAAGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
*
8615198 CACAACGGCGGATCTTATTTCCCTGGCGGTGCAGC
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* * *
8615233 GGAGCAGATTGAAGTCACAACAGCAGATCTGGTTTCCTCGACAGCGCAATTAAAAGGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* * * **
8615298 CACAACGGTGGATCTTACTTTCCTGGCGATGCAAT
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* *
8615333 GGAGCAGATTGAAGTCATAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAAAGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
*
8615398 CACAACGGCGGATCTTACTTCCCTGACGGTGCAGC
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* * *
8615433 AGAGCAGATTAAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGTAATTAAAAAGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* * *
8615498 CACAACGGCGGATCTTACTTCCTTGGCGATGCAGT
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* *
8615533 GGAGCAGATTGAAGTCACAACGGCGGATCTTGTTTCCCCGACAGCGCAATT-AAAAGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* * * * *
8615597 CACAACGGCAGATCTTATTTCTCTGG-GGATGCGGT
66 CACAACGGCGGATCTTACTTCCCTGGCGG-TGCAGC
* * * * * * *
8615632 GGAGTAGATTGAAGTCACAACAGCGGATCTAG-TTCCCCGACAGTGTAATT-AAAAGATTAAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* ** * ** *
8615695 CACAACAGTAGATCTTACTTCCTTGATGGTACAGC
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* *
8615730 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCAACAGTGCAATTAAAAAGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* *
8615795 CACAACGGCAGATCTTATTTCCCTGGCGGTGCAGC
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
*
8615830 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAGGATTGAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
*
8615895 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGT
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* * * * * *
8615930 GGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGATAGTGCAACTAAAAGGATTAAAGC
1 GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
* * * * *
8615995 CACAACGACAGATCTTACTTCCCTGACGATGCAGT
66 CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
* * *** *
8616030 GGAGAATGATTGAAGTTACAACGATGGATCTGGTTTCCCCGACAGCACAATTAAAAAGATTGAAG
1 GGAGCA-GATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAG
* * * *
8616095 CTACAACGGCGGATCTTATTTCCTTAGCGGTGCAG
65 CCACAACGGCGGATCTTACTTCCCTGGCGGTGCAG
8616130 TTGAACAGGT
Statistics
Matches: 882, Mismatches: 110, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
98 80 0.09
99 87 0.10
100 639 0.72
101 76 0.09
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (100 bp):
GGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGC
CACAACGGCGGATCTTACTTCCCTGGCGGTGCAGC
Found at i:8619741 original size:3 final size:3
Alignment explanation
Indices: 8619718--8619760 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
8619708 TGTTATTAAG
* * *
8619718 TTA TTC TTA TAA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8619761 AATATACATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:8627259 original size:6 final size:6
Alignment explanation
Indices: 8627250--8627281 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8627240 TCTTCTTTTG
8627250 TGGGTT TGGGTT TGGGTT TGGGTT TGGGTT TG
1 TGGGTT TGGGTT TGGGTT TGGGTT TGGGTT TG
8627282 TTTGTCTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
TGGGTT
Found at i:8638158 original size:9 final size:9
Alignment explanation
Indices: 8638144--8638175 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
8638134 AACTTGGTGC
8638144 ATTTTGTTT
1 ATTTTGTTT
8638153 ATTTTGTTT
1 ATTTTGTTT
8638162 ATTTTGTTT
1 ATTTTGTTT
8638171 ATTTT
1 ATTTT
8638176 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:8642621 original size:9 final size:9
Alignment explanation
Indices: 8642607--8642638 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
8642597 AACTTGGTGC
8642607 ATTTTGTTT
1 ATTTTGTTT
8642616 ATTTTGTTT
1 ATTTTGTTT
8642625 ATTTTGTTT
1 ATTTTGTTT
8642634 ATTTT
1 ATTTT
8642639 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:8642746 original size:23 final size:23
Alignment explanation
Indices: 8642716--8642764 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
8642706 ATTGAAACAA
*
8642716 CATAATGATAGCTAATATGCTTT
1 CATAATGATAACTAATATGCTTT
8642739 CATAATGATAACTAATATGCTTT
1 CATAATGATAACTAATATGCTTT
8642762 CAT
1 CAT
8642765 CTTTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (23 bp):
CATAATGATAACTAATATGCTTT
Found at i:8644595 original size:7 final size:7
Alignment explanation
Indices: 8644585--8644611 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8644575 ATTTTATATT
8644585 TTAAAAC
1 TTAAAAC
8644592 TTAAAAC
1 TTAAAAC
8644599 TTAAAAC
1 TTAAAAC
8644606 TTAAAA
1 TTAAAA
8644612 TTATTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (7 bp):
TTAAAAC
Found at i:8647287 original size:20 final size:21
Alignment explanation
Indices: 8647246--8647292 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8647236 TCCTTGGCAA
**
8647246 TTTA-CAAACATTAAATTTTT
1 TTTATCAAACATTAAATCATT
8647266 TTTATCAAACATTAAA-CATT
1 TTTATCAAACATTAAATCATT
8647286 TTTATCA
1 TTTATCA
8647293 CTTCAAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTATCAAACATTAAATCATT
Found at i:8649043 original size:102 final size:101
Alignment explanation
Indices: 8648867--8649206 Score: 338
Period size: 102 Copynumber: 3.4 Consensus size: 101
8648857 TATCGATGAA
* * *
8648867 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAGTAATGGTCACATGTGTGGCAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAACTAACGGTCACATGTGTAGCAC
8648932 TAAGTGAAGGCTACTATGT-ACACCAAGAAGCTTTGAG
66 TAAGTGAAGGCTACTATGTGA-ACCAAGAAGC-TTGAG
* * * ** * * *
8648969 CACGTGTGTAGTACTGTGTGAATGCTACCACGTGTCTCGGTAAACT-ACGGTTATATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAAT-AACTAACGGTCACATGTGTAGCA
*
8649033 CTAAGTGAAGGCTACTATGTGAACTAAGAAGCTTGAG
65 CTAAGTGAAGGCTACTATGTGAACCAAGAAGCTTGAG
* * * *
8649070 CACGTGTGTAGTACTGAGTGAAGGCTACTACGTG-AGTCGTAA-AACT--TGTTCACGTGTGTAG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTA-TC--AATAACTAACGGTCACATGTGTAG
* * * ** *
8649131 TACTATGTGAAGGCTACTACGTGAATTGTAA-AA-C-TGAT
63 CACTAAGTGAAGGCTACTATGTGAA--CCAAGAAGCTTGAG
*
8649169 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATC
8649207 GAATGATAAA
Statistics
Matches: 201, Mismatches: 29, Indels: 19
0.81 0.12 0.08
Matches are distributed among these distances:
99 37 0.18
100 35 0.17
101 44 0.22
102 81 0.40
103 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAACTAACGGTCACATGTGTAGCAC
TAAGTGAAGGCTACTATGTGAACCAAGAAGCTTGAG
Found at i:8649090 original size:50 final size:50
Alignment explanation
Indices: 8648867--8649202 Score: 203
Period size: 51 Copynumber: 6.7 Consensus size: 50
8648857 TATCGATGAA
* * *
8648867 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTA-TCAATAAG-TAATG-G
1 CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGAACT-AAGAAGCT--TGAG
* * * * * *
8648917 TCACATGTGTGGCACTAAGTGAAGGCTACTATGT-ACACCAAGAAGCTTTGAG
1 -CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGA-ACTAAGAAGC-TTGAG
* * * * ** * *
8648969 CACGTGTGTAGTACTGTGTGAATGCTACCACGTG-TCTCGGTAAACTACG-G
1 CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGAACTAAG-AAGCT-TGAG
* ** * *
8649019 TTATATGTGTAGTACTAAGTGAAGGCTACTATGTGAACTAAGAAGCTTGAG
1 -CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGAACTAAGAAGCTTGAG
* **
8649070 CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGAGTCGTAA-AA-CTTGTT
1 CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGA-AC-TAAGAAGCTTGAG
* *
8649120 CACGTGTGTAGTACT-ATGTGAAGGCTACTACGTGAATTGTAA-AA-C-TGAT
1 CACGTGTGTAGTACTGA-GTGAAGGCTACTACGTGAA--CTAAGAAGCTTGAG
8649169 CACGTGTGTAGTACT-ATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTGA-GTGAAGGCTACTACGTG
8649203 TATCGAATGA
Statistics
Matches: 222, Mismatches: 47, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
49 38 0.17
50 78 0.35
51 98 0.44
52 7 0.03
53 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTGAGTGAAGGCTACTACGTGAACTAAGAAGCTTGAG
Found at i:8649191 original size:49 final size:49
Alignment explanation
Indices: 8649024--8649202 Score: 238
Period size: 50 Copynumber: 3.6 Consensus size: 49
8649014 TACGGTTATA
* * * *
8649024 TGTGTAGTACTAAGTGAAGGCTACTATGTGAA-CTAAGAAGCTTGAGCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAATGTAA-AA-CTTGATCACG
* *
8649074 TGTGTAGTACTGA-GTGAAGGCTACTACGTGAGTCGTAAAACTTGTTCACG
1 TGTGTAGTACT-ATGTGAAGGCTACTACGTGAAT-GTAAAACTTGATCACG
8649124 TGTGTAGTACTATGTGAAGGCTACTACGTGAATTGTAAAAC-TGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAA-TGTAAAACTTGATCACG
8649173 TGTGTAGTACTATGTGAAGGCTACTACGTG
1 TGTGTAGTACTATGTGAAGGCTACTACGTG
8649203 TATCGAATGA
Statistics
Matches: 117, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
49 38 0.32
50 72 0.62
51 4 0.03
52 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAATGTAAAACTTGATCACG
Found at i:8652549 original size:9 final size:9
Alignment explanation
Indices: 8652535--8652563 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8652525 TCTCAAATGC
8652535 AAAAAAAAT
1 AAAAAAAAT
8652544 -AAAAAAAT
1 AAAAAAAAT
8652552 AAAAAAAAT
1 AAAAAAAAT
8652561 AAA
1 AAA
8652564 TGTCTAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8654429 original size:23 final size:25
Alignment explanation
Indices: 8654389--8654437 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
8654379 TATTGAACCT
* *
8654389 AAATTTTTAAATTAAAAAAT-TAAA
1 AAATTTTAAAAATAAAAAATATAAA
8654413 AAATTTTAAAAAT-AAAAATATAAA
1 AAATTTTAAAAATAAAAAATATAAA
8654437 A
1 A
8654438 TTAAATTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATTTTAAAAATAAAAAATATAAA
Found at i:8654658 original size:22 final size:22
Alignment explanation
Indices: 8654632--8654675 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8654622 ATATGTAAGA
8654632 ACATCATTTTGGTGCAACATTT
1 ACATCATTTTGGTGCAACATTT
8654654 ACATCATTTTGGTGCAACATTT
1 ACATCATTTTGGTGCAACATTT
8654676 CAGGTGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (22 bp):
ACATCATTTTGGTGCAACATTT
Found at i:8658222 original size:60 final size:60
Alignment explanation
Indices: 8658129--8658251 Score: 246
Period size: 60 Copynumber: 2.0 Consensus size: 60
8658119 GTTTTGCTTG
8658129 TAACCTTTTTGCAGATATAATTAGCACATAAGAGAGCACCATGGAAAAGTCATTTGAGCT
1 TAACCTTTTTGCAGATATAATTAGCACATAAGAGAGCACCATGGAAAAGTCATTTGAGCT
8658189 TAACCTTTTTGCAGATATAATTAGCACATAAGAGAGCACCATGGAAAAGTCATTTGAGCT
1 TAACCTTTTTGCAGATATAATTAGCACATAAGAGAGCACCATGGAAAAGTCATTTGAGCT
8658249 TAA
1 TAA
8658252 TTAGAGGAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (60 bp):
TAACCTTTTTGCAGATATAATTAGCACATAAGAGAGCACCATGGAAAAGTCATTTGAGCT
Found at i:8673587 original size:21 final size:21
Alignment explanation
Indices: 8673563--8673615 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8673553 CGCTGTTTCT
* *
8673563 AATCTCACTGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
* *
8673584 AATCTCACCGCTGCAGTAACT
1 AATCTCACCGCTACAGTAACC
8673605 AATCTCACCGC
1 AATCTCACCGC
8673616 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.38, G:0.11, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:8674099 original size:89 final size:91
Alignment explanation
Indices: 8673996--8674200 Score: 315
Period size: 89 Copynumber: 2.3 Consensus size: 91
8673986 TAATTATAAC
* * * *
8673996 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAACTATAATTTCATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * *
8674061 -ATATA-ATTTTGATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTAA
8674085 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
8674150 GATATATAATTTCATATAATTCTTAA
66 GATATATAATTTCATAAAATTCTTAA
*
8674176 TAATAAATGTTCTTATATGAATTTA
1 TAATAAATTTTCTTATATGAATTTA
8674201 CTAAAATCAT
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
89 61 0.58
90 5 0.05
91 39 0.37
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTAA
Found at i:8688914 original size:21 final size:22
Alignment explanation
Indices: 8688890--8688930 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8688880 ATCTTGAGCT
*
8688890 CTAAAATT-CAATCCCTAAATA
1 CTAAAATTCCAAACCCTAAATA
8688911 CTAAAATTCCAAACCCTAAA
1 CTAAAATTCCAAACCCTAAA
8688931 CCCTTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (22 bp):
CTAAAATTCCAAACCCTAAATA
Found at i:8690183 original size:9 final size:9
Alignment explanation
Indices: 8690169--8690228 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
8690159 ATCGTCATCC
8690169 AAAAAATTT
1 AAAAAATTT
8690178 AAAAAATCTT
1 AAAAAAT-TT
* *
8690188 TACAAATTGT
1 AAAAAATT-T
*
8690198 GAAAAAAATT
1 -AAAAAATTT
*
8690208 AAAAAAATT
1 AAAAAATTT
8690217 AAAAAA-TT
1 AAAAAATTT
8690225 AAAA
1 AAAA
8690229 TTTGAGAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
8 6 0.14
9 23 0.53
10 9 0.21
11 5 0.12
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (9 bp):
AAAAAATTT
Found at i:8693103 original size:23 final size:23
Alignment explanation
Indices: 8693071--8693115 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8693061 CCGATTTGCT
*
8693071 CCCTCCGTTTCTTTTCTTTTCTG
1 CCCTCCGTTTATTTTCTTTTCTG
*
8693094 CCCTCTGTTTATTTTCTTTTCT
1 CCCTCCGTTTATTTTCTTTTCT
8693116 TTTCTTCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.02, C:0.31, G:0.07, T:0.60
Consensus pattern (23 bp):
CCCTCCGTTTATTTTCTTTTCTG
Found at i:8693121 original size:38 final size:38
Alignment explanation
Indices: 8693078--8693224 Score: 95
Period size: 38 Copynumber: 4.1 Consensus size: 38
8693068 GCTCCCTCCG
8693078 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCT
1 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCT
* ** **
8693116 TTTC-TTCCAATT-TGCTCC-C---TTCGTTTC---T--
1 TTTCTTTTCTTTTCTGC-CCTCTGTTTATTTTCTTTTCT
8693144 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCT
1 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCT
* * * *
8693182 TTTC-TGTCGATTTGCT-CCCTTTGTTTCTTTTCTTTTCT
1 TTTCTTTTC--TTTTCTGCCCTCTGTTTATTTTCTTTTCT
8693220 TTTCT
1 TTTCT
8693225 GCCGATTTGC
Statistics
Matches: 80, Mismatches: 14, Indels: 29
0.65 0.11 0.24
Matches are distributed among these distances:
28 4 0.05
29 7 0.09
30 5 0.06
33 12 0.15
36 5 0.06
37 10 0.12
38 32 0.40
39 5 0.06
ACGTcount: A:0.03, C:0.25, G:0.07, T:0.65
Consensus pattern (38 bp):
TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCT
Found at i:8693171 original size:66 final size:66
Alignment explanation
Indices: 8693078--8693227 Score: 266
Period size: 66 Copynumber: 2.3 Consensus size: 66
8693068 GCTCCCTCCG
8693078 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCT-TCCAATTTGCTCCCTTCGTTT
1 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCTGT-CAATTTGCTCCCTTCGTTT
8693142 CT
65 CT
* *
8693144 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCTGTCGATTTGCTCCCTTTGTTTC
1 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCTGTCAATTTGCTCCCTTCGTTTC
8693209 T
66 T
8693210 TTTCTTTTCTTTTCTGCC
1 TTTCTTTTCTTTTCTGCC
8693228 GATTTGCCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
66 80 0.99
67 1 0.01
ACGTcount: A:0.03, C:0.26, G:0.07, T:0.63
Consensus pattern (66 bp):
TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCTGTCAATTTGCTCCCTTCGTTTC
T
Found at i:8693225 original size:38 final size:38
Alignment explanation
Indices: 8693094--8693234 Score: 142
Period size: 38 Copynumber: 4.0 Consensus size: 38
8693084 TTCTTTTCTG
* *
8693094 CCCTCTGTTTATTTTCTTTTCTTTTCTTCCAATTTGCT
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
*
8693132 CCCT-TCGTTTCTTTTCTTTTC-TTT-T--C----TG--
1 CCCTCT-GTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
*
8693160 CCCTCTGTTTATTTTCTTTTCTTTTCTGTCGATTTGCT
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
* *
8693198 CCCTTTGTTTCTTTTCTTTTCTTTTCTGCCGATTTGC
1 CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGC
8693235 CAGTTTCTGC
Statistics
Matches: 86, Mismatches: 5, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
28 18 0.21
29 4 0.05
30 3 0.03
32 1 0.01
34 1 0.01
36 3 0.03
37 4 0.05
38 52 0.60
ACGTcount: A:0.04, C:0.26, G:0.09, T:0.61
Consensus pattern (38 bp):
CCCTCTGTTTATTTTCTTTTCTTTTCTGCCGATTTGCT
Found at i:8693252 original size:66 final size:66
Alignment explanation
Indices: 8693078--8693253 Score: 158
Period size: 66 Copynumber: 2.7 Consensus size: 66
8693068 GCTCCCTCCG
* ** * ** * *
8693078 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCT-TCCAATTTGCTCCCTTCGTTT
1 TTTCTTTTCTTTTCTGCCATCTGTCCAGTTTCTGCTCATTTCTGT-CGATTTGCTCCCTTCGTTT
8693142 CT
65 CT
* ** * ** * *
8693144 TTTCTTTTCTTTTCTGCCCTCTGTTTATTTTCTTTTCTTTTCTGTCGATTTGCTCCCTTTGTTTC
1 TTTCTTTTCTTTTCTGCCATCTGTCCAGTTTCTGCTCATTTCTGTCGATTTGCTCCCTTCGTTTC
8693209 T
66 T
* *
8693210 TTTCTTTTCTTTTCTGCCGATTTG-CCAGTTTCTGCTGATTTCTG
1 TTTCTTTTCTTTTCTGCC-ATCTGTCCAGTTTCTGCTCATTTCTG
8693254 AGTTACTGCA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
66 93 0.96
67 4 0.04
ACGTcount: A:0.05, C:0.25, G:0.10, T:0.61
Consensus pattern (66 bp):
TTTCTTTTCTTTTCTGCCATCTGTCCAGTTTCTGCTCATTTCTGTCGATTTGCTCCCTTCGTTTC
T
Found at i:8696188 original size:16 final size:17
Alignment explanation
Indices: 8696153--8696194 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
8696143 ATTATTTTAA
*
8696153 ATTTTTATTAAATCATAT
1 ATTTTAATTAAA-CATAT
8696171 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAACATAT
8696187 A-TTTAATT
1 ATTTTAATT
8696195 TTAATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
18 11 0.48
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAACATAT
Found at i:8696279 original size:120 final size:120
Alignment explanation
Indices: 8696155--8696562 Score: 680
Period size: 120 Copynumber: 3.4 Consensus size: 120
8696145 TATTTTAAAT
* * * *
8696155 TTTTATTAAATCATATATTTTAATTAAAATATATTTAATTTTAATTAT-TTAAAATTATCTTTTA
1 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT-AATTTATATTTTA
* *
8696219 TAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAA
65 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
* *
8696275 TTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAT
1 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTTAT
8696340 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
66 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
* *
8696395 TTTTATTAAATTATATATTTTAATTATAATATATTT-A--ATAATTATGTTAATTTATATTTCAT
1 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTTAT
*
8696457 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAAA
66 AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
8696512 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
1 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
8696563 TAAATATGAT
Statistics
Matches: 273, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
117 113 0.41
118 1 0.00
119 1 0.00
120 156 0.57
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
TTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTTAT
AGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAA
Found at i:8696313 original size:15 final size:15
Alignment explanation
Indices: 8696278--8696329 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8696268 TTAAGAATTT
*
8696278 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8696292 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8696306 TATTTAATAATAAT-
1 TATTTAATTATAATA
8696320 TATGTTAATT
1 TAT-TTAATT
8696330 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8696539 original size:18 final size:18
Alignment explanation
Indices: 8696511--8696559 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
8696501 ATTATTAAAA
8696511 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
8696528 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
8696544 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
8696560 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:8696545 original size:16 final size:16
Alignment explanation
Indices: 8696511--8696565 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
8696501 ATTATTAAAA
8696511 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
8696528 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
8696544 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
8696558 ATGTTTAA
1 AT-TTTAA
8696566 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Done.