Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 34 of 213
Found at i:9176208 original size:21 final size:19
Alignment explanation
Indices: 9176184--9176252 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 19
9176174 AAAATAGTAT
*
9176184 AAAAAATTTTGAGGGAATA
1 AAAAAATTATGAGGGAATA
*
9176203 GAAAAAATTATGAAGGGTATCA
1 -AAAAAATTATG-AGGGAAT-A
9176225 AAAAAATTATG-GGGAAGTA
1 AAAAAATTATGAGGGAA-TA
9176244 CAAAAAATT
1 -AAAAAATT
9176253 TTCGAGGAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.12
20 19 0.45
21 17 0.40
22 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (19 bp):
AAAAAATTATGAGGGAATA
Found at i:9176269 original size:21 final size:21
Alignment explanation
Indices: 9176204--9176270 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
9176194 GAGGGAATAG
9176204 AAAAAATTATGAAGG--GTATCA
1 AAAAAATTATG-AGGAAGTA-CA
*
9176225 AAAAAATTATGGGGAAGTAC-
1 AAAAAATTATGAGGAAGTACA
*
9176245 AAAAAATTTTCGAGG-AGTACA
1 AAAAAATTAT-GAGGAAGTACA
9176266 AAAAA
1 AAAAA
9176271 TCATAAGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 16 0.41
21 20 0.51
22 3 0.08
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.21
Consensus pattern (21 bp):
AAAAAATTATGAGGAAGTACA
Found at i:9181503 original size:3 final size:3
Alignment explanation
Indices: 9181495--9181519 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9181485 AGAGTTTAAT
9181495 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
9181520 GTTTTGGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:9185997 original size:18 final size:17
Alignment explanation
Indices: 9185974--9186007 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9185964 TTGAATTCCA
9185974 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9185992 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9186008 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Found at i:9188934 original size:98 final size:98
Alignment explanation
Indices: 9188758--9188952 Score: 338
Period size: 98 Copynumber: 2.0 Consensus size: 98
9188748 ACAATAAAAT
*
9188758 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
* *
9188823 TCTAGAATTCCAAACTC-AGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGA-AATATTTCCTTTAC
9188856 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9188921 TTTAAAATCCCAAACTCGAAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGAAATATTTCCTTTA
9188953 TTGTTTTTAG
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 91 0.99
99 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGAAATATTTCCTTTAC
Found at i:9190427 original size:19 final size:19
Alignment explanation
Indices: 9190403--9190534 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
9190393 AATCATATAT
9190403 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
9190422 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
9190441 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9190460 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
9190481 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
9190500 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9190519 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
9190535 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9190487 original size:59 final size:59
Alignment explanation
Indices: 9190396--9190533 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
9190386 ATTACAAAAT
*
9190396 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
9190451 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
9190510 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
9190534 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:9190857 original size:44 final size:43
Alignment explanation
Indices: 9190751--9191091 Score: 225
Period size: 44 Copynumber: 7.9 Consensus size: 43
9190741 GACTTGCTTA
* * *
9190751 TTTAGTCTGCTTCACTGCAACTTCAGGGAGATAAGA-CTA-GA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGGT
** * *
9190792 TGCAATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-AGGT
* * *
9190835 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TATCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA--GGT
* * * *
9190879 TTTAATCTGCTCCACTGCAACTTTAGGGAGATAATA-CTTGCCAT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAG--GT
* * * * * *
9190923 CTTCAGTCTGCCCCACTGCAACTT-AAGGAGGATAAGA-CTTGCT
1 -TTTAATCTGCTCCACTGCAACTTCAGGGA-GATAAGATCTAGGT
* * *
9190966 TACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAG-TCTA-GA
1 T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGGT
*** * *
9191009 TGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-AGGT
** ** *
9191052 TTTAATCCACTCCACTGCAAGATCAGGGAGATAGGATCTA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA
9191092 CAATCTTCAA
Statistics
Matches: 230, Mismatches: 51, Indels: 36
0.73 0.16 0.11
Matches are distributed among these distances:
40 42 0.18
41 19 0.08
42 5 0.02
43 20 0.09
44 110 0.48
45 34 0.15
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAGGT
Found at i:9190945 original size:45 final size:44
Alignment explanation
Indices: 9190710--9191002 Score: 162
Period size: 44 Copynumber: 6.7 Consensus size: 44
9190700 TGCCATCTTC
* * * *
9190710 AGTCTGC-CTCACTGTAACTTCA-GGAGGATAAGACTTGCTTATTT
1 AGTCTGCTC-CACTGCAACTTTAGGGA-GATAAGACTTGCATACTT
* * * *
9190754 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTAG-ATGC--
1 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCATACTT
* * * * * * *
9190795 AATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAG-GT-TTT
1 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGA-CT-TGCATACTT
* * * * *
9190838 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TT--ATCGGCTTT
1 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCAT--AC-TT
* *
9190882 AATCTGCTCCACTGCAACTTTAGGGAGATAATACTTGCCAT-CTT
1 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG-CATACTT
* * *
9190926 CAGTCTGCCCCACTGCAAC-TTAAGGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCCACTGCAACTTTAGGGA-GATAAGACTTGCATACTT
* *
9190971 AGTCTGCTCCACTACAACTTCAGGGAGATAAG
1 AGTCTGCTCCACTGCAACTTTAGGGAGATAAG
9191003 TCTAGATGCG
Statistics
Matches: 199, Mismatches: 31, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
40 23 0.12
41 9 0.05
42 4 0.02
43 8 0.04
44 113 0.57
45 40 0.20
48 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCATACTT
Found at i:9191126 original size:217 final size:217
Alignment explanation
Indices: 9190700--9191114 Score: 643
Period size: 217 Copynumber: 1.9 Consensus size: 217
9190690 TAGGAATTAG
* * * * *
9190700 TGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTTCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
9190765 CTGCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTACAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
* * * * *
9190830 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
131 AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTCAACCTGCTCCACT
*
9190895 GCAACTTTAGGGAGATAATACT
196 GCAACTTGAGGGAGATAATACT
9190917 TGCCATCTTCAGTCTGCCCCACTGCAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
* *
9190982 CTACAACTTCAGGGAGATAAGTCTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTACAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
* * * *
9191047 AAGGTTTTAATCCACTCCACTGCAAGATCAGGGAGATAGGATCTA-CAATCTTCAACCTTCTCCG
131 AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGAT-TATC-AGCTTCAACCTGCTCCA
9191111 CTGC
194 CTGC
9191115 TGTTGAGGGA
Statistics
Matches: 179, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
217 162 0.91
218 17 0.09
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTAAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTACAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
AAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTCAACCTGCTCCACT
GCAACTTGAGGGAGATAATACT
Found at i:9191200 original size:217 final size:215
Alignment explanation
Indices: 9190752--9191223 Score: 488
Period size: 217 Copynumber: 2.2 Consensus size: 215
9190742 ACTTGCTTAT
* * * *
9190752 TTAGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAG
1 TTAGTCTACTCCACTACAACTTCAGGGAGATAAGTCTAGATGCAATCTGCTCTCTGCAACTTCAG
* * * *
9190817 AGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
66 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTC
* * * * * * *
9190882 AATCTGCTCCACTGCAACTTTAGGGAGATAATACTTGCCATCTTCAGTCTGCCCCACTGCAACTT
131 AACCTGCTCCACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACT-CAACTT
* *** *
9190947 AAGGAGGATAAGACTTGCTTAC
195 -AGGAAGATAAGACCACCGTAC
* *
9190969 TTAGTCTGCTCCACTACAACTTCAGGGAGATAAGTCTAGATGCGATCTGCTCTCTGCAACTTCAG
1 TTAGTCTACTCCACTACAACTTCAGGGAGATAAGTCTAGATGCAATCTGCTCTCTGCAACTTCAG
* *
9191034 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAAGATCAGGGAGATAGGATCTA-CAATCT
66 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGAT-TATC-AGCT
* * ** * *** *
9191098 TCAACCTTCTCCGCTGC-TGTTGAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT-AT
129 TCAACCTGCTCCACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGC--CCCACTCAA
9191161 CTT-GGAAAGATAAGATCCACCGT-C
192 CTTAGG-AAGATAAGA-CCACCGTAC
* **
9191185 TTCGATCTACTCCACTACTGCTT-AGGGAGATAAGATCTA
1 TTAG-TCTACTCCACTACAACTTCAGGGAGATAAG-TCTA
9191224 CAATCTTCAA
Statistics
Matches: 212, Mismatches: 35, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
215 2 0.01
216 23 0.11
217 164 0.77
218 17 0.08
219 6 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (215 bp):
TTAGTCTACTCCACTACAACTTCAGGGAGATAAGTCTAGATGCAATCTGCTCTCTGCAACTTCAG
AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACATCAGGGAGATAGGATTATCAGCTTC
AACCTGCTCCACTGCAACTTGAGGGAGACAAGACTTGCCAGCTTAAATCTGCCCCACTCAACTTA
GGAAGATAAGACCACCGTAC
Found at i:9191215 original size:132 final size:132
Alignment explanation
Indices: 9191076--9191464 Score: 670
Period size: 132 Copynumber: 2.9 Consensus size: 132
9191066 CTGCAAGATC
*
9191076 AGGGAGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
* *
9191141 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCACCGTCTTCGATCTACTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
9191206 TT
131 TT
*
9191208 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGTTGTTGAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
*
9191273 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
9191338 TT
131 TT
* * * *
9191340 AGGGAGATAAGATCTACAATCTTCAACCTTCTTCGTTGCTGCTCAGGGAGACAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
* * *
9191405 TTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
9191465 GTCAATGTAG
Statistics
Matches: 243, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 243 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTGAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGC
TT
Found at i:9191362 original size:44 final size:44
Alignment explanation
Indices: 9191168--9191365 Score: 111
Period size: 44 Copynumber: 4.5 Consensus size: 44
9191158 TATCTTGGAA
* ** * *
9191168 AGATAAGATCCACCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATCTACAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * * **
9191212 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGTTG-TTGAGGG
1 AGATAAGATCTACAATCTTCAATCTGCTCCACTACTGCTT-AGGG
* * *** * *
9191256 AGACAAG-GCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTACAAT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
** * *
9191300 AGATAAGATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTACAATCTTCAATCTGCTCCACTACTGCTTAGGG
9191344 AGATAAGATCTACAATCTTCAA
1 AGATAAGATCTACAATCTTCAA
9191366 CCTTCTTCGT
Statistics
Matches: 109, Mismatches: 33, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
42 7 0.06
43 8 0.07
44 82 0.75
45 7 0.06
46 5 0.05
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
AGATAAGATCTACAATCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:9197434 original size:98 final size:98
Alignment explanation
Indices: 9197262--9197456 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
9197252 ACAATAAAAT
* *
9197262 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACGCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9197327 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
9197360 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
9197425 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
9197457 TTGTTTTTAG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:9197755 original size:9 final size:9
Alignment explanation
Indices: 9197741--9197795 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
9197731 TAAAAAGGCC
9197741 TATAAATAA
1 TATAAATAA
9197750 TATAAATAA
1 TATAAATAA
*
9197759 -ATGAATAA
1 TATAAATAA
9197767 -ATAAAATCAA
1 TAT-AAAT-AA
*
9197777 TATACATAA
1 TATAAATAA
*
9197786 TAAAAATAA
1 TATAAATAA
9197795 T
1 T
9197796 CACATACAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 9 0.24
9 22 0.58
10 5 0.13
11 2 0.05
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (9 bp):
TATAAATAA
Found at i:9198936 original size:19 final size:19
Alignment explanation
Indices: 9198912--9199043 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
9198902 AATCATATAT
9198912 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
9198931 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
9198950 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9198969 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
9198990 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
9199009 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
9199028 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
9199044 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:9198996 original size:59 final size:59
Alignment explanation
Indices: 9198905--9199042 Score: 221
Period size: 59 Copynumber: 2.4 Consensus size: 59
9198895 ATTACAAAAT
*
9198905 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
9198960 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
9199019 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
9199043 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.14
59 58 0.76
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:9200064 original size:20 final size:20
Alignment explanation
Indices: 9200041--9200093 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
9200031 GAGGGAATAG
9200041 AAAAAATCATGAGGAAGTAC
1 AAAAAATCATGAGGAAGTAC
*
9200061 AAAAAATTTC-T-AGGGAGTAC
1 AAAAAA--TCATGAGGAAGTAC
*
9200081 AGAAAATCATGAG
1 AAAAAATCATGAG
9200094 ATAATATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 21 0.78
21 1 0.04
22 2 0.07
ACGTcount: A:0.51, C:0.09, G:0.21, T:0.19
Consensus pattern (20 bp):
AAAAAATCATGAGGAAGTAC
Found at i:9202378 original size:20 final size:20
Alignment explanation
Indices: 9202347--9202384 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9202337 ACTCTCTAAG
9202347 AAAATAATGAAATGAAATACA
1 AAAATAATGAAAT-AAATACA
9202368 AAAATAA-GAAATAAATA
1 AAAATAATGAAATAAATA
9202385 TATTGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAAATAATGAAATAAATACA
Found at i:9206984 original size:218 final size:218
Alignment explanation
Indices: 9206752--9207745 Score: 1593
Period size: 218 Copynumber: 4.6 Consensus size: 218
9206742 ATATCTGATA
* * ** * *
9206752 CGATCTATTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG-AAATC
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACT-
* * **
9206816 TCAGGGGGATAGGATAGTGTCTT-CAGTCTGCTCCGCCATAATCTCAGGGAGATAAGATCTCTGG
65 TCAGGGAGATAGGATAGTGTCTTGGA-TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGG
* * *
9206880 CTTCAATCTGCTTCAACGTAATCTCGGGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGT
129 CTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
9206945 AACCTCAGGGAGATAAGACCAGATG
194 AACCTCAGGGAGATAAGACCAGATG
*
9206970 CGATCTACTCTACTGTAACCTCAGAGAGATAAGGTCCTAAATTTTAATCCGCTCCACTGTAACTT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTT
*
9207035 TAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
66 CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
* *
9207100 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTATAA
131 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
9207165 CCTCAGGGAGATAAGACCAGATG
196 CCTCAGGGAGATAAGACCAGATG
9207188 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTT
* *
9207253 CAGGGAGATAGGATAGTGTCTTGGATCTGTTCTGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
66 CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
9207318 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
131 TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
*
9207383 CCTCAGGGAGATAAGACCTGATG
196 CCTCAGGGAGATAAGACCAGATG
*
9207406 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCAGCTCCACTGTAACTT
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTT
*
9207471 CAGGGAGATAGGATAGTGTCTTGGATCTGCTCTGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
66 CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
* * *
9207536 TCAATCTGCTCC-ACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTA
131 TCAATCTGCTCCAAC-GTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTA
*
9207600 ACCTCAGGGAGATAAGACCTGATG
195 ACCTCAGGGAGATAAGACCAGATG
* * * **
9207624 CGATCTACTCTGCTGTAACTTCAGAAAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-TC
1 CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACT-
* **
9207688 TCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
65 TCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
9207746 CCTGATACGA
Statistics
Matches: 731, Mismatches: 39, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
217 3 0.00
218 686 0.94
219 41 0.06
220 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (218 bp):
CGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTT
CAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCT
TCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
CCTCAGGGAGATAAGACCAGATG
Found at i:9207111 original size:87 final size:87
Alignment explanation
Indices: 9207015--9208608 Score: 521
Period size: 85 Copynumber: 18.4 Consensus size: 87
9207005 CCTAAATTTT
* * * * *
9207015 AATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
9207080 GGGAGATAAGATCTCTGGCTTC
66 GGGAGATAAGATCTCTGGCTTC
* * * *
9207102 AATCTGCTCCAAC-GTAA-TCTCGGGGAGATAAGAT-CTAAAATTCTTCGG-TCTACTCCACTAT
1 AATCTGCTCC-ACTGTAACT-TCAGGGAGATAAGATACT----GTCTT-GGATCTGCTCCACTGT
* * * *
9207163 AACCTCAGGGAGATAAGA-C-C-AGATGC
59 AATCTCAGGGAGATAAGATCTCTGGCTTC
* * * * * * * ** *
9207189 GATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAAT-TTTAATCCGCTCCACTGTAA-CT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACT--GTCTTGGATCTGCTCCACTGTAATC-
* ** * *
9207252 TCAGGGAGATAGGAT-AGTGTCTTG
63 TCAGGGAGATAAGATCTCTGGCTTC
* * ** * * **
9207276 GATCTGTTCTGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-GTAATC
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT-ACTGTCTTGGATCTGCTCC-ACTGTAATC
* * *
9207339 TCGGGGAGATAAGATCTGAAAT-TCTTC
63 TCAGGGAGATAAGATCT---CTGGCTTC
** * * * * * * *
9207366 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG--ATGCGATCTACTCTACTGTAACCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTGCTCCACTGTAATCTC
* *** *
9207428 AGAGAGATAAGATC-CTAAATTTT
65 AGGGAGATAAGATCTCT-GGCTTC
* * * **
9207451 AATCAGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCTGCTGTAATCTCA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
9207516 GGGAGATAAGATCTCTGGCTTC
66 GGGAGATAAGATCTCTGGCTTC
* * *
9207538 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGG-TCTACTCTACTGTAA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTG----TCTT-GGATCTGCTCCACTGTAA
* * *
9207601 CCTCAGGGAGATAAGA-C-CT-GATGC
61 TCTCAGGGAGATAAGATCTCTGGCTTC
* * ** ** * * * ** *
9207625 GATCTACTCTGCTGTAACTTCAGAAAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCTC
* *
9207690 AGGGAGATAGGAT-TACTAGCTTC
65 AGGGAGATAAGATCT-CTGGCTTC
* * * ** * *
9207713 AATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGA-CCTG-ATACGATCTACTCTACTGTAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* * * *** *
9207774 AAGAGAGATAAGATCTTTTATTTT
64 CAGGGAGATAAGATCTCTGGCTTC
* * * * ** *
9207798 AATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCGCTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TACTGTCTTGGATCTGCTCCACTGTAATCT
* * *
9207862 CAGGGAAATAAGA-C-CT-GATAC
64 CAGGGAGATAAGATCTCTGGCTTC
* * * * * * * * ** **
9207883 GATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCCCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCTC
* ***
9207948 AGGGAGATAGGAT-TACTATATTC
65 AGGGAGATAAGATCT-CTGGCTTC
* * * * ** * * *
9207971 AATCTTCTCCGCTGTAA-TCTCAGGGAGATGAGAT-CTG-ATACGATCTTCTCTACTGGAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* *** *
9208032 CAGAGAGATAAGATC-CTTTATTTT
64 CAGGGAGATAAGATCTC-TGGCTTC
** * * * ** * *
9208056 AATCCACTCCACTGTAA-TCTCAGAGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TACTGTCTTGGATCTGCTCCACTGTAATCT
* *
9208120 CAGGGAGATAAGA--TCT-GATAC
64 CAGGGAGATAAGATCTCTGGCTTC
* * * * * * * ** *
9208141 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCTC
* **
9208206 AGGGAGATAGGAT-TACTATCTTC
65 AGGGAGATAAGATCT-CTGGCTTC
* * * ** ** *
9208229 AATTTGCTCCGCTGTAA-TCTCAGGGAGATAAGAT-CTG-ATACGATCCACTCTACTGTAA-CTT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATC-T
* *** *
9208290 CAGAGAGATAAGATC-CTTTATTTT
64 CAGGGAGATAAGATCTC-TGGCTTC
** * * ** * *
9208314 AATCCACTCCACTGTAA-TCTCAGGGAGATAGGATTATCAG-CTTCAATCTACTCCGCTGTAATC
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TA-CTGTCTTGGATCTGCTCCACTGTAATC
* *
9208377 TCAGGGAGATAAGA-C-C-GGATAC
63 TCAGGGAGATAAGATCTCTGGCTTC
* * * * * ** **
9208399 GATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACTGTAATCT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT--CTTGGATCTGCTCCACTGTAATCT
* *
9208463 CAGGGAGATAGGAT-TACTAGCTTC
64 CAGGGAGATAAGATCT-CTGGCTTC
* * * ** *
9208487 AATCTGCTCCACTGTAA-TCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGATACTGT-CTTGGATCTGCTCCACTGTAATCT
* **
9208551 CAGGGAGATAGGAT-TACTATCTTC
64 CAGGGAGATAAGATCT-CTGGCTTC
**
9208575 AATCTGCTCCGTTGTAA-TCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT
9208609 CTGAAATTCT
Statistics
Matches: 1134, Mismatches: 283, Indels: 179
0.71 0.18 0.11
Matches are distributed among these distances:
82 2 0.00
83 1 0.00
84 16 0.01
85 431 0.38
86 23 0.02
87 255 0.22
88 300 0.26
89 8 0.01
90 93 0.08
91 5 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (87 bp):
AATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTGCTCCACTGTAATCTCA
GGGAGATAAGATCTCTGGCTTC
Found at i:9207771 original size:129 final size:129
Alignment explanation
Indices: 9207595--9208519 Score: 1530
Period size: 129 Copynumber: 7.2 Consensus size: 129
9207585 GTCTACTCTA
* * * *
9207595 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAAAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9207660 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
*
9207724 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTAAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
9207789 TTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* *
9207853 CTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
9207918 CTTTATTTTAATCCCCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTTCTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* * * *
9207982 CTGTAATCTCAGGGAGATGAGATCTGATACGATCTTCTCTACTGGAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9208047 CTTTATTTTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTATCTTCAATCTACTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
*
9208111 CTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9208176 CTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATTTGCTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
* *
9208240 CTGTAATCTCAGGGAGATAAGATCTGATACGATCCACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
9208305 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTA-TCAGCTTCAATCTACTCCG
66 CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACT-ATCTTCAATCTGCTCCG
*
9208369 CTGTAATCTCAGGGAGATAAGACCGGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
9208433 CTGTGATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCA
66 CT-TTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
9208498 CTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
9208520 TCCTTTATTT
Statistics
Matches: 751, Mismatches: 42, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
128 3 0.00
129 747 0.99
130 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (129 bp):
CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCG
Found at i:9209846 original size:7 final size:7
Alignment explanation
Indices: 9209828--9209874 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
9209818 TTAGCCTCTC
9209828 CATTTTT
1 CATTTTT
9209835 C-TTTTT
1 CATTTTT
9209841 CATTTTT
1 CATTTTT
9209848 CATTTTT
1 CATTTTT
*
9209855 CA-TTCT
1 CATTTTT
9209861 CATTTTT
1 CATTTTT
9209868 CATTTTT
1 CATTTTT
9209875 TTTACTCAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:9209846 original size:13 final size:14
Alignment explanation
Indices: 9209828--9209874 Score: 71
Period size: 13 Copynumber: 3.5 Consensus size: 14
9209818 TTAGCCTCTC
9209828 CATTTTTC-TTTTT
1 CATTTTTCATTTTT
9209841 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
9209855 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
9209868 CATTTTT
1 CATTTTT
9209875 TTTACTCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 20 0.67
14 10 0.33
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:9209882 original size:20 final size:20
Alignment explanation
Indices: 9209828--9209874 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
9209818 TTAGCCTCTC
* *
9209828 CATTTTTCTTTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
9209848 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
9209868 CATTTTT
1 CATTTTT
9209875 TTTACTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:9210871 original size:13 final size:13
Alignment explanation
Indices: 9210855--9210879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9210845 TTCTTTTTGT
9210855 TTTTTTATTTTTA
1 TTTTTTATTTTTA
9210868 TTTTTTATTTTT
1 TTTTTTATTTTT
9210880 TTCATTTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:9210873 original size:22 final size:22
Alignment explanation
Indices: 9210825--9210893 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
9210815 TTGATCTTGA
* * *
9210825 TTTTGATTTTTTCTTCTTTCTTCT
1 TTTTGTTTTTTTATT-TTTATT-T
9210849 TTTTGTTTTTTTATTTTTATTT
1 TTTTGTTTTTTTATTTTTATTT
* *
9210871 TTTAT-TTTTTTCATTTTCATTT
1 TTT-TGTTTTTTTATTTTTATTT
9210893 T
1 T
9210894 GACTTTGACT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
22 20 0.51
23 6 0.15
24 13 0.33
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.80
Consensus pattern (22 bp):
TTTTGTTTTTTTATTTTTATTT
Found at i:9217239 original size:44 final size:44
Alignment explanation
Indices: 9217191--9217866 Score: 216
Period size: 44 Copynumber: 15.5 Consensus size: 44
9217181 TGCTCCGCCA
9217191 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTTCAAC-G
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTAC-TCAACTG
** * * ** ** *
9217235 TAATCTTGGGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTG
1 TAATCTCAGGGAGATAAGATCT--CTGGCTTCAATCTACTCAACTG
* * * *
9217281 TAACCTCAGGGAGATAAGA-C-C-AGATGT-AATCTACTCTACTG
1 TAATCTCAGGGAGATAAGATCTCTGGCT-TCAATCTACTCAACTG
* ** * ** * **
9217322 TAA-CTTCAGGGAGATAGGAT-AGTGTCTTGGATCTGCTCCGCTG
1 TAATC-TCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
*
9217365 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-G
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACT-CAACTG
* * * * * *
9217409 TAATCTCGGGGAGATAAGATCTAAAAT-TCTTCAGTCTACTCCACTA
1 TAATCTCAGGGAGATAAGATCT---CTGGCTTCAATCTACTCAACTG
* ** * * * * *
9217455 TAACCTCAGGGATTTAAGA-C-C-AGATGCGATCTACTCTACTG
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
* * * * * ** *
9217496 TAACCTCAGAGAGATAAGATC-CTAAGTTTTAATCCGCTCCACTG
1 TAATCTCAGGGAGATAAGATCTCT-GGCTTCAATCTACTCAACTG
* * ** * ** * *
9217540 TAA-CTTTAGGGAGATAGGAT-AGTGTCTTGGATCTGCTCCACTG
1 TAATC-TCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
*
9217583 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-G
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACT-CAACTG
* * ***
9217627 TAATCTC-GAGGAGATAAGATCTGAAAT-TCTTTGGTCTACTCCAAC-G
1 TAATCTCAG-GGAGATAAGATCT---CTGGCTTCAATCTACT-CAACTG
* * * * *
9217673 TAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTACTG
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
* * *** * **
9217714 TAACCTCAGAGAGATAAGATC-CTAAATTTTAATCCGCT-ACACTG
1 TAATCTCAGGGAGATAAGATCTCT-GGCTTCAATCTACTCA-ACTG
* ** * ** * **
9217758 TAA-CTTCAGGGAGATAGGAT-AGTGTCTTGGATCTGCTCCGCTG
1 TAATC-TCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
* *
9217801 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTG
1 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
* *
9217845 TAACCTTAGGGAGATAAGATCT
1 TAATCTCAGGGAGATAAGATCT
9217867 GAAATTCTTC
Statistics
Matches: 465, Mismatches: 127, Indels: 80
0.69 0.19 0.12
Matches are distributed among these distances:
40 4 0.01
41 84 0.18
42 7 0.02
43 89 0.19
44 182 0.39
45 14 0.03
46 82 0.18
47 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCAACTG
Found at i:9217393 original size:174 final size:174
Alignment explanation
Indices: 9217134--9217511 Score: 549
Period size: 174 Copynumber: 2.2 Consensus size: 174
9217124 CCTTTATTTT
* * * * *
9217134 AATCCACTCCACTGAAATCTCAGGGGGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCA
1 AATCTACTCTACTGTAACCTCAGGGAGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCA
* * * * *
9217199 GGGAGATAAGATCTCTGGCTTCAATCTACTTCAACGTAATCTTGGGGAGATAAGATTTGAATTTC
66 GGGAGATAAGATCTCTGGCTTCAATCTACTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTC
* * *
9217264 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCAGATGT
131 TTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGC
* ** **
9217308 AATCTACTCTACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCA
1 AATCTACTCTACTGTAACCTCAGGGAGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCA
*
9217373 GGGAGATAAGATCTCTGGCTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTC
66 GGGAGATAAGATCTCTGGCTTCAATCTACTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTC
**
9217438 TTCAGTCTACTCCACTATAACCTCAGGGATTTAAGACCAGATGC
131 TTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGC
* *
9217482 GATCTACTCTACTGTAACCTCAGAGAGATA
1 AATCTACTCTACTGTAACCTCAGGGAGATA
9217512 AGATCCTAAG
Statistics
Matches: 180, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
174 180 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (174 bp):
AATCTACTCTACTGTAACCTCAGGGAGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCA
GGGAGATAAGATCTCTGGCTTCAATCTACTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTC
TTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGC
Found at i:9217398 original size:218 final size:214
Alignment explanation
Indices: 9217173--9217953 Score: 991
Period size: 218 Copynumber: 3.6 Consensus size: 214
9217163 AGGATAGTGT
** * * * *
9217173 CTTCAATCTGCTCCGCCATAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTACTTCAACGTA
1 CTTCAATCTGCTCCAACGTAATCTCAGGGAGATAAGATCTAAT-TCTTCAGTCTACTTCAACGTA
* ** ** * * * *
9217237 ATCTTGGGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C
65 ACCTCAGGGAGATAAGACCTG-A----TGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATC
* **
9217301 C-AGATGTAATCTACTCTACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTG
125 CTAGATTTAATCCGCTC-ACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTG
9217365 TAATCTCAGGGAGATAAGATCTCTGG
189 TAATCTCAGGGAGATAAGATCTCTGG
* * *
9217391 CTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTCTTCAGTCTAC-TCCACTA
1 CTTCAATCTGCTCCAACGTAATCTCAGGGAGATAAGATCT--AATTCTTCAGTCTACTTCAAC-G
** *
9217455 TAACCTCAGGGATTTAAGACCAGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTA
63 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCT-
* * *
9217520 AGTTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTGTCTTGGATCTGCTCCACTGTA
127 AGATTTAATCCGCT-CACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTA
9217585 ATCTCAGGGAGATAAGATCTCTGG
191 ATCTCAGGGAGATAAGATCTCTGG
** *
9217609 CTTCAATCTGCTCCAACGTAATCTC-GAGGAGATAAGATCTGAAATTCTTTGGTCTACTCCAACG
1 CTTCAATCTGCTCCAACGTAATCTCAG-GGAGATAAGATCT--AATTCTTCAGTCTACTTCAACG
9217673 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTA
63 TAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTA
*
9217738 AATTTTAATCCGCTACACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTA
128 GA-TTTAATCCGCT-CACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTA
9217803 ATCTCAGGGAGATAAGATCTCTGG
191 ATCTCAGGGAGATAAGATCTCTGG
* * * *
9217827 CTTCAATCTGCTCC-ACTGTAACCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTAC-TCTACT
1 CTTCAATCTGCTCCAAC-GTAATCTCAGGGAGATAAGATCT--AATTCTTCAGTCTACTTCAAC-
* *
9217890 GTAACCTCAGGGAGATAAGACCAGATGCGATCTACTCTACTGTAACCTCAGAGAGATAATATCC
62 GTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCC
9217954 AATATTTTTA
Statistics
Matches: 501, Mismatches: 48, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
215 32 0.06
216 2 0.00
217 7 0.01
218 424 0.85
219 10 0.02
220 25 0.05
221 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (214 bp):
CTTCAATCTGCTCCAACGTAATCTCAGGGAGATAAGATCTAATTCTTCAGTCTACTTCAACGTAA
CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAGAT
TTAATCCGCTCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTCTGG
Found at i:9217399 original size:87 final size:88
Alignment explanation
Indices: 9217149--9217424 Score: 266
Period size: 87 Copynumber: 3.2 Consensus size: 88
9217139 ACTCCACTGA
* ** **
9217149 AATC-TCAGGGGGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCAGGGAGATAAGATCT
1 AATCTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
9217213 CTGGCTTCAATCTACTTCAACGT
66 CTGGCTTCAATCTACTTCAACGT
* * * * * * *
9217236 AATCTT-GGGGAGATAAGATTTGAATTTCTTCGG-TCTACTCCACTGTAACCTCAGGGAGATAAG
1 AATCTTCAGGGAGATAGGA--T-AGTGTCTT-GGATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * *
9217299 A-C-C-AGATGT-AATCTAC-TCTACTGT
62 ATCTCTGGCT-TCAATCTACTTCAAC-GT
9217323 AA-CTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 AATCTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
* *
9217387 CTGGCTTCAATCTGCTCCAACGT
66 CTGGCTTCAATCTACTTCAACGT
*
9217410 AATC-TCGGGGAGATA
1 AATCTTCAGGGAGATA
9217425 AGATCTAAAA
Statistics
Matches: 146, Mismatches: 28, Indels: 30
0.72 0.14 0.15
Matches are distributed among these distances:
83 2 0.01
84 34 0.23
85 2 0.01
86 9 0.06
87 58 0.40
88 7 0.05
89 2 0.01
90 32 0.22
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (88 bp):
AATCTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
CTGGCTTCAATCTACTTCAACGT
Found at i:9217576 original size:174 final size:174
Alignment explanation
Indices: 9217191--9217604 Score: 494
Period size: 174 Copynumber: 2.4 Consensus size: 174
9217181 TGCTCCGCCA
* * * * *
9217191 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTTCAACGTAATCTTGGGGAGATAAGATT
1 TAATCTCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATC
* * * * *
9217256 TGAATTTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCAGATGTAATCTACTCTACT
66 TAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGCAATCTACTCTACT
* * * * * * *
9217321 GTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTG
131 GTAACCTCAGAGAGATAAGATACTGTCTTGAATCCGCTCCACTG
*
9217365 TAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATC
1 TAATCTCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATC
** *
9217430 TAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGATTTAAGACCAGATGCGATCTACTCTACT
66 TAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGCAATCTACTCTACT
* *
9217495 GTAACCTCAGAGAGATAAGATCCTAAGT-TTTAATCCGCTCCACTG
131 GTAACCTCAGAGAGATAAGATACT--GTCTTGAATCCGCTCCACTG
* * * * ** *
9217540 TAA-CTTTAGGGAGATAGGAT-AGTGTCTTGGATCTGCTCC-ACTGTAATCTCAGGGAGATAAGA
1 TAATC-TCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAAC-GTAATCTCGGGGAGATAAGA
9217602 TCT
64 TCT
9217605 CTGGCTTCAA
Statistics
Matches: 207, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
173 2 0.01
174 174 0.84
175 29 0.14
176 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (174 bp):
TAATCTCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAACGTAATCTCGGGGAGATAAGATC
TAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGAGATAAGACCAGATGCAATCTACTCTACT
GTAACCTCAGAGAGATAAGATACTGTCTTGAATCCGCTCCACTG
Found at i:9217821 original size:392 final size:392
Alignment explanation
Indices: 9217091--9217822 Score: 983
Period size: 392 Copynumber: 1.9 Consensus size: 392
9217081 ATCTGATACT
* * *
9217091 ATCTATTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGAAATCTCA
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTAATTTTAATCCACTCCACTGAAATCTCA
* *
9217156 GGGGGATAGGATAGTGTCTTCAATCTGCTCCGCCATAATCTCAGGGAGATAAGATCTCTGGCTTC
66 GGGAGATAGGATAGTGTCTTCAATCTGCTCCACCATAATCTCAGGGAGATAAGATCTCTGGCTTC
* * * * *
9217221 AATCTACTTCAACGTAATCTTGGGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGTAACC
131 AATCTACTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
* * * * * *
9217286 TCAGGGAGATAAGACCAGATGTAATCTACTCTACTGTAACTTCAGGGAGATAGGATAGTGTCTTG
196 TCAGGGAGATAAGACCAGATGCAATCTACTCTACTGTAACCTCAGAGAGATAAGATACTATCTTG
* * * * *
9217351 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCAACGTAATCTC
261 AATCCGCTACACTGTAATCTCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAACGTAATCTC
*
9217416 GGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGATTTAAGACCAGATG
326 AGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGATTTAAGACCAGATG
9217481 CG
391 CG
* *
9217483 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCC-TAAGTTTTAATCCGCTCCACTGTAA-CTT
1 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTAA-TTTTAATCCACTCCACTGAAATC-T
* ** **
9217546 TAGGGAGATAGGATAGTGTCTTGGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCT
64 CAGGGAGATAGGATAGTGTCTTCAATCTGCTCCACCATAATCTCAGGGAGATAAGATCTCTGGCT
* *
9217611 TCAATCTGCTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTTGGTCTACTCCAAC-GTA
129 TCAATCTACTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCC-ACTGTA
* * *
9217675 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAA
193 ACCTCAGGGAGATAAGACCAGATGCAATCTACTCTACTGTAACCTCAGAGAGATAAGATACT--A
* * * * ** *
9217740 T-TTTAATCCGCTACACTGTAA-CTTCAGGGAGATAGGAT-AGTGTCTTGGATCTGCTCC-GCTG
256 TCTTGAATCCGCTACACTGTAATC-TCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAAC-G
9217801 TAATCTCAGGGAGATAAGATCT
319 TAATCTCAGGGAGATAAGATCT
9217823 CTGGCTTCAA
Statistics
Matches: 292, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
391 4 0.01
392 256 0.88
393 31 0.11
394 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (392 bp):
ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTAATTTTAATCCACTCCACTGAAATCTCA
GGGAGATAGGATAGTGTCTTCAATCTGCTCCACCATAATCTCAGGGAGATAAGATCTCTGGCTTC
AATCTACTCCAACGTAATCTCGAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
TCAGGGAGATAAGACCAGATGCAATCTACTCTACTGTAACCTCAGAGAGATAAGATACTATCTTG
AATCCGCTACACTGTAATCTCAGGGAGATAAGATCACTGGCTTCAATCTGCTCCAACGTAATCTC
AGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGATTTAAGACCAGATG
CG
Found at i:9217932 original size:87 final size:86
Alignment explanation
Indices: 9217243--9217948 Score: 333
Period size: 87 Copynumber: 8.1 Consensus size: 86
9217233 CGTAATCTTG
*
9217243 GGGAGATAAGATTTGAATTTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCAGATG
1 GGGAGATAAGATCT-AA-TTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCCAGATG
* *
9217307 TAATCTACTCTACTGTAACTTCA
64 CAATCTACTCTACTGTAACCTCA
* * * * * * *
9217330 GGGAGATAGGA--TAGTGTCTT-GGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 GGGAGATAAGATCTAAT-TCTTCGG-TCTACTCCACTGTAACCTCAGGGAGATAAGATC-C-AGA
* * * * *
9217392 TTCAATCTGCTCCAAC-GTAATCTCG
62 TGCAATCTACT-CTACTGTAACCTCA
* * **
9217417 GGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTATAACCTCAGGGATTTAAGA-CCAGATG
1 GGGAGATAAGATCT--AATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCCAGATG
*
9217481 CGATCTACTCTACTGTAACCTCA
64 CAATCTACTCTACTGTAACCTCA
* ** ** * * *
9217504 GAGAGATAAGATCCTAAGTT-TT-AATCCGCTCCACTGTAACTTTAGGGAGATAGGAT--AG-TG
1 GGGAGATAAGAT-CTAA-TTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCCAGATG
* * * *
9217564 TCTTGGATCTGCTCCACTGTAATCTCA
64 -C---AATCTACTCTACTGTAACCTCA
* * ** * * * *
9217591 GGGAGATAAGATCT-CTGGCTTCAATCTGCTCCAAC-GTAATCTC-GAGGAGATAAGATCTGAAA
1 GGGAGATAAGATCTAAT-TCTTCGGTCTACTCC-ACTGTAACCTCAG-GGAGATAAGATC-CAGA
* ** *
9217653 TTCTTTGGTCTACTCCAAC-GTAACCTCA
62 TGC---AATCTACT-CTACTGTAACCTCA
* * * * * * * *
9217681 GGGAGATAAGACCTGA---TGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTT
1 GGGAGATAAGATCTAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCC-AGA-TG
* ** *
9217743 TAATCCGCTAC-ACTGTAACTTCA
64 CAATCTACT-CTACTGTAACCTCA
* * * * * * *
9217766 GGGAGATAGGA--TAGTGTCTT-GGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 GGGAGATAAGATCTAAT-TCTTCGG-TCTACTCCACTGTAACCTCAGGGAGATAAGATC-C-AGA
* * * *
9217828 TTCAATCTGCTCCACTGTAACCTTA
62 TGCAATCTACTCTACTGTAACCTCA
*
9217853 GGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGA-CCAGATG
1 GGGAGATAAGATCT--AATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCCAGATG
*
9217917 CGATCTACTCTACTGTAACCTCA
64 CAATCTACTCTACTGTAACCTCA
*
9217940 GAGAGATAA
1 GGGAGATAA
9217949 TATCCAATAT
Statistics
Matches: 466, Mismatches: 106, Indels: 94
0.70 0.16 0.14
Matches are distributed among these distances:
83 6 0.01
84 39 0.08
85 49 0.11
86 17 0.04
87 235 0.50
88 14 0.03
89 4 0.01
90 91 0.20
91 11 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (86 bp):
GGGAGATAAGATCTAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGATCCAGATGCA
ATCTACTCTACTGTAACCTCA
Found at i:9217969 original size:218 final size:218
Alignment explanation
Indices: 9217269--9217969 Score: 1076
Period size: 218 Copynumber: 3.2 Consensus size: 218
9217259 ATTTCTTCGG
* * * * **
9217269 TCTACTCCACTGTAACCTCAGGGAGATAAGA-CC-AGA-TGTAATCTACT-CTACTGTAACTTCA
1 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTAC-ACTGTAACTTCA
9217330 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
65 GGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
** * * * *
9217395 AATCTGCTCCAACGTAATCTCGGGGAGATAAGATCTAAAATTCTTCAGTCTACTCCACTATAACC
130 AATCTGCTCCAACGTAATCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCAACTGTAACC
**
9217460 TCAGGGATTTAAGACCAGATGCGA
195 TCAGGGAGATAAGACCAGATGCGA
* * *
9217484 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAGTTTTAATCCGCTCCACTGTAACTTTAG
1 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTACACTGTAACTTCAG
*
9217549 GGAGATAGGATAGTGTCTTGGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
66 GGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
* *
9217614 ATCTGCTCCAACGTAATC-TCGAGGAGATAAGATCTGAAATTCTTTGGTCTACTCCAAC-GTAAC
131 ATCTGCTCCAACGTAATCTTAG-GGAGATAAGATCTGAAATTCTTCGGTCTACT-CAACTGTAAC
*
9217677 CTCAGGGAGATAAGACCTGATGCGA
194 CTCAGGGAGATAAGACCAGATGCGA
9217702 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTACACTGTAACTTCAG
1 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTACACTGTAACTTCAG
9217767 GGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
66 GGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
* *
9217832 ATCTGCTCC-ACTGTAACCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTAACC
131 ATCTGCTCCAAC-GTAATCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCAACTGTAACC
9217896 TCAGGGAGATAAGACCAGATGCGA
195 TCAGGGAGATAAGACCAGATGCGA
* *
9217920 TCTACTCTACTGTAACCTCAGAGAGATAATATCC-AATATTTTTATCCGCT
1 TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAA-ATTTTAATCCGCT
9217970 CCATGGTTAT
Statistics
Matches: 446, Mismatches: 30, Indels: 17
0.90 0.06 0.03
Matches are distributed among these distances:
215 29 0.07
216 2 0.00
217 9 0.02
218 400 0.90
219 6 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (218 bp):
TCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTACACTGTAACTTCAG
GGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA
ATCTGCTCCAACGTAATCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCAACTGTAACCT
CAGGGAGATAAGACCAGATGCGA
Found at i:9221162 original size:17 final size:18
Alignment explanation
Indices: 9221136--9221174 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
9221126 AAGCCTAATT
9221136 ATTTCAATGTTTT-AAAA
1 ATTTCAATGTTTTCAAAA
*
9221153 ATTTCCATGTTTTCAAAA
1 ATTTCAATGTTTTCAAAA
9221171 ATTT
1 ATTT
9221175 TCGAGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.49
Consensus pattern (18 bp):
ATTTCAATGTTTTCAAAA
Found at i:9221182 original size:18 final size:18
Alignment explanation
Indices: 9221143--9221242 Score: 98
Period size: 18 Copynumber: 5.7 Consensus size: 18
9221133 ATTATTTCAA
* *
9221143 TGTTTT-AAAAATTTCCA
1 TGTTTTCAAAAATTTTCG
9221160 TGTTTTCAAAAATTTTCG
1 TGTTTTCAAAAATTTTCG
* * *
9221178 AGTTTTTAAGAATTTTCG
1 TGTTTTCAAAAATTTTCG
* * *
9221196 TG-TCTCTAAAATTCTCG
1 TGTTTTCAAAAATTTTCG
9221213 TGTTTT-AAAAATTTTTCG
1 TGTTTTCAAAAA-TTTTCG
9221231 TGTTTTCAAAAA
1 TGTTTTCAAAAA
9221243 AAAATAACTG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
17 22 0.34
18 38 0.58
19 5 0.08
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (18 bp):
TGTTTTCAAAAATTTTCG
Found at i:9221183 original size:35 final size:35
Alignment explanation
Indices: 9221144--9221242 Score: 110
Period size: 35 Copynumber: 2.8 Consensus size: 35
9221134 TTATTTCAAT
* * *
9221144 GTTTTAAAAATTTCCATGTTTTCAAAAATTTTCGA
1 GTTTTAAAAATTTTCGTGTTTTCAAAAATTCTCGA
* * * *
9221179 GTTTTTAAGAATTTTCGTG-TCTCTAAAATTCTCGT
1 G-TTTTAAAAATTTTCGTGTTTTCAAAAATTCTCGA
9221214 GTTTTAAAAATTTTTCGTGTTTTCAAAAA
1 GTTTTAAAAA-TTTTCGTGTTTTCAAAAA
9221243 AAAATAACTG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
34 8 0.16
35 22 0.43
36 21 0.41
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (35 bp):
GTTTTAAAAATTTTCGTGTTTTCAAAAATTCTCGA
Found at i:9230565 original size:10 final size:9
Alignment explanation
Indices: 9230520--9230579 Score: 59
Period size: 9 Copynumber: 6.6 Consensus size: 9
9230510 TATTATGCCT
*
9230520 AAAAAAGAC
1 AAAAAAAAC
*
9230529 GAAAAAAAC
1 AAAAAAAAC
9230538 AAAAAAATA-
1 AAAAAAA-AC
9230547 AAAAAAAAC
1 AAAAAAAAC
9230556 AAAACAAAAC
1 AAAA-AAAAC
* *
9230566 AAAGAAAAG
1 AAAAAAAAC
9230575 AAAAA
1 AAAAA
9230580 GAAAAATCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
8 1 0.02
9 32 0.76
10 9 0.21
ACGTcount: A:0.83, C:0.08, G:0.07, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:9231616 original size:78 final size:78
Alignment explanation
Indices: 9231461--9232457 Score: 1159
Period size: 77 Copynumber: 13.0 Consensus size: 78
9231451 AAATTTTTTT
*
9231461 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
9231524 TTT-TGGTTTTTCAA
65 TTTCT-GTTTTTCAA
* * * *
9231538 AAATCAACTCATATTGCGAGAAGTGAGTTCAGCCTCGGTCACATGCTGAGGTATTTCTTTTATAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
*
9231603 TTTTGTTTTTCAA
66 TTCTGTTTTTCAA
*
9231616 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
*
9231681 TTCTGTTTTT-TA
66 TTCTGTTTTTCAA
* * * *
9231693 AAATCAACTCATAATACGAGAGGTGGGTTGAGCCTCGGGT--CATGCTGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
9231756 TTTCTGTTTTTCAA
65 TTTCTGTTTTTCAA
* * *
9231770 AAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTATAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
9231835 TTCTGTTTTTCAA
66 TTCTGTTTTTCAA
* * *
9231848 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGG-A---ATTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
**
9231907 TTTCTGTTTTTTTA
65 TTTCTGTTTTTCAA
* * * *
9231921 AAATAAACTCATATTGCGAGAGGTGAGTTGAACCTCGGGT--CATGTCGAGGTATTTCTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
***
9231984 TTTCTGTTTTTTTT
65 TTTCTGTTTTTCAA
* *
9231998 AAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
**
9232063 TTCTGTTTTT-TT
66 TTCTGTTTTTCAA
* *
9232075 AAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
* *
9232140 TCCTGTTTTTTAA
66 TTCTGTTTTTCAA
* * * * *
9232153 AAATCTACTTATAATGCGAGAGGTGAGTTGAGCCTCAGGT--CATGCTGAGGTA----TTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
* ***
9232212 TTTCTATTTTTTTT
65 TTTCTGTTTTTCAA
* * * * * * *
9232226 AAATTAGCTCATATTGTGAGAGGTGAGTTGAGCCTTGGACACACGCCGAGGTATTT-TTGTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
9232290 TTCTGTTTTTTTCAA
66 TTCTG--TTTTTCAA
* *
9232305 AAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGTCACATACCGAGGTA--TCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
*
9232368 TTTATGTTTTTCAA
65 TTTCTGTTTTTCAA
* * * * * * *
9232382 AAATCAACTCATAATGCTAGAGGTGAGTCGAGCCTCGGGCCACACGCCAAGGTA----TTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTAAA
9232443 TTTCTGTTTTTCAA
65 TTTCTGTTTTTCAA
9232457 A
1 A
9232458 TAAAAAGAAA
Statistics
Matches: 798, Mismatches: 95, Indels: 56
0.84 0.10 0.06
Matches are distributed among these distances:
71 1 0.00
72 2 0.00
73 105 0.13
74 11 0.01
75 20 0.03
76 42 0.05
77 308 0.39
78 239 0.30
79 56 0.07
80 14 0.02
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (78 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAAAT
TTCTGTTTTTCAA
Found at i:9232081 original size:305 final size:306
Alignment explanation
Indices: 9231461--9232457 Score: 1277
Period size: 305 Copynumber: 3.3 Consensus size: 306
9231451 AAATTTTTTT
9231461 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* *
9231524 TTT-TGGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTCAGCCTCGGTCACATGCTGAG
66 TTTCT-GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCAC--GCTGAG
* * * ** *
9231588 GTATTTCTTTTATATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
128 G-A-AT-TTTCA-ATTTCTGTTTTTTTAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
9231653 GACACATGCCGAGGTATTTCTTTTAAATTTCTG-TTTTTTAAAATCAACTCATAATACGAGAGGT
189 GACACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTTTAAAATCAACTCATATTGCGAGAGGT
* ** *
9231717 GGGTTGAGCCTCGGGTCATGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAA
254 GAGTTGAGCCTCGGCACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAA
* * * *
9231770 AAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTC-GGTCACATGCCGAGGTATTTCTTTTATA
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
9231834 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGA
66 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACGCTGAGGA
* **
9231899 ATTTTCAATTTCTGTTTTTTTAAAATAAACTCATATTGCGAGAGGTGAGTTGAACCTCGG-GTCA
130 ATTTTCAATTTCTGTTTTTTTAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACA
* * * *
9231963 TGTCGAGGTATTTCTTTTCAATTTCTGTTTTTTTTAAATCAACTTATATTGCGAGAGGTGAGTTG
195 TGCCGAGGTATTTCTTTTAAATTTCTGTTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTG
**
9232028 AGCCTCGGACACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTT-TT
260 AGCCTCGG-CACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAA
* * *
9232075 AAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * * * * * *
9232139 TTCCTGTTTTTTAAAAATCTACTTATAATGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGT
66 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACGCTGAGGA
* * * * * *
9232204 ATTTTCAATTTCTATTTTTTTTAAATTAGCTCATATTGTGAGAGGTGAGTTGAGCCTTGGACACA
130 ATTTTCAATTTCTGTTTTTTTAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACA
* * *
9232269 CGCCGAGGTATTT-TTGTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGT
195 TGCCGAGGTATTTCTTTTAAATTTCTGTTTTTTT--AAAATCAACTCATATTGCGAGAGGTGAGT
* *
9232333 TGAGCCTCGGGTCACATACCGAGGTA--TCTTTTAAATTTATGTTTTTCAA
258 TGAGCCTC-GG-CACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAA
* * * * * *
9232382 AAATCAACTCATAATGCTAGAGGTGAGTCGAGCCTCGGGCCACACGCCAAGGTA----TTTTCAA
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
9232443 TTTCTGTTTTTCAAA
66 TTTCTGTTTTTCAAA
9232458 TAAAAAGAAA
Statistics
Matches: 605, Mismatches: 71, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
304 46 0.08
305 275 0.45
306 69 0.11
307 67 0.11
308 33 0.05
309 40 0.07
310 68 0.11
311 7 0.01
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (306 bp):
AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACGCTGAGGAA
TTTTCAATTTCTGTTTTTTTAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAT
GCCGAGGTATTTCTTTTAAATTTCTGTTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGCACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAA
Found at i:9232671 original size:29 final size:29
Alignment explanation
Indices: 9232613--9232676 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
9232603 AAAAAATAAA
* *
9232613 AAATTACATTTTGGCCCCTAAACTTTTTG
1 AAATTACATTATGGACCCTAAACTTTTTG
*
9232642 AAATTACATTAT-GACCCTAAATTTTCTTG
1 AAATTACATTATGGACCCTAAACTTT-TTG
9232671 AAATTA
1 AAATTA
9232677 TGTTTTGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (29 bp):
AAATTACATTATGGACCCTAAACTTTTTG
Found at i:9233037 original size:3 final size:3
Alignment explanation
Indices: 9233031--9233080 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
9233021 GAAAAAAAAA
*
9233031 AAG AAG AAG AAG AAG AAG AAG AAG AAG TAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
9233079 AA
1 AA
9233081 AGAAAAAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:9233094 original size:6 final size:6
Alignment explanation
Indices: 9233021--9233132 Score: 75
Period size: 6 Copynumber: 18.0 Consensus size: 6
9233011 GGTGAAGAGG
* * * * * *
9233021 GAAAAA AAAAAA GAAGAA GAAGAA GAAGAA GAAGAAGTA GAAGAA GAAGAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AA--A GAAAAA GAAAAA
* * *
9233072 GAAGAA GAAAGAA -AAAAA GAAAAA -AGAATA GAAAAA GGAAAAA GAAAAC
1 GAAAAA GAAA-AA GAAAAA GAAAAA GA-AAAA GAAAAA -GAAAAA GAAAAA
9233121 GAAAAA GAAAAA
1 GAAAAA GAAAAA
9233133 ATAAAAAATT
Statistics
Matches: 88, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
5 3 0.03
6 70 0.80
7 10 0.11
8 1 0.01
9 4 0.05
ACGTcount: A:0.74, C:0.01, G:0.23, T:0.02
Consensus pattern (6 bp):
GAAAAA
Found at i:9233108 original size:18 final size:19
Alignment explanation
Indices: 9233085--9233138 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
9233075 GAAGAAAGAA
*
9233085 AAAAAGAAAAAAGAATA-G
1 AAAAAGAAAAAAGAAAACG
*
9233103 AAAAAGGAAAAAGAAAACG
1 AAAAAGAAAAAAGAAAACG
*
9233122 AAAAAGAAAAAATAAAA
1 AAAAAGAAAAAAGAAAA
9233139 AATTAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.04
Consensus pattern (19 bp):
AAAAAGAAAAAAGAAAACG
Found at i:9233138 original size:19 final size:18
Alignment explanation
Indices: 9233023--9233138 Score: 79
Period size: 21 Copynumber: 5.9 Consensus size: 18
9233013 TGAAGAGGGA
*
9233023 AAAAAAAAAAGAAGAAGAAG
1 AAAAAGAAAA-AAGAA-AAG
* *
9233043 AAGAAGAAGAAGAAGTAGAAG
1 AAAAAGAA-AA-AAG-AAAAG
* *
9233064 AAGAAGAAGAAGAAGAAAGAA
1 AAAAAGAA-AA-AAGAAA-AG
*
9233085 AAAAAGAAAAAAGAATAG
1 AAAAAGAAAAAAGAAAAG
*
9233103 AAAAAGGAAAAAGAAAACG
1 AAAAAGAAAAAAGAAAA-G
*
9233122 AAAAAGAAAAAATAAAA
1 AAAAAGAAAAAAGAAAA
9233139 AATTAATAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
18 16 0.20
19 21 0.26
20 10 0.12
21 32 0.40
22 1 0.01
ACGTcount: A:0.75, C:0.01, G:0.22, T:0.03
Consensus pattern (18 bp):
AAAAAGAAAAAAGAAAAG
Found at i:9233323 original size:25 final size:26
Alignment explanation
Indices: 9233295--9233347 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
9233285 AGCCCAAGTG
9233295 CAGGCCCAGCGCAGCAGCAGGCC-CC
1 CAGGCCCAGCGCAGCAGCAGGCCACC
*
9233320 CAGGCCCAGCGCAGTAGCAGGCCACC
1 CAGGCCCAGCGCAGCAGCAGGCCACC
9233346 CA
1 CA
9233348 CACCAGCAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.23, C:0.45, G:0.30, T:0.02
Consensus pattern (26 bp):
CAGGCCCAGCGCAGCAGCAGGCCACC
Found at i:9233410 original size:7 final size:8
Alignment explanation
Indices: 9233395--9233419 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9233385 CCAGCCCAGC
9233395 AGAAAAAA
1 AGAAAAAA
9233403 AGAAAAAA
1 AGAAAAAA
9233411 AGAAAAAA
1 AGAAAAAA
9233419 A
1 A
9233420 ACGAGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:9233426 original size:20 final size:21
Alignment explanation
Indices: 9233403--9233441 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9233393 GCAGAAAAAA
9233403 AGAAAA-AAAGAAAAAAAACG
1 AGAAAAGAAAGAAAAAAAACG
*
9233423 AGAAAAGAAGGAAAAAAAA
1 AGAAAAGAAAGAAAAAAAA
9233442 TGGTTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (21 bp):
AGAAAAGAAAGAAAAAAAACG
Found at i:9233783 original size:18 final size:18
Alignment explanation
Indices: 9233762--9234226 Score: 242
Period size: 18 Copynumber: 25.9 Consensus size: 18
9233752 AAAATATTCA
9233762 AAAAAATTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
* *
9233780 AAAAAAATTCCCATG-TTTC
1 -AAAAAATT-TCGTGTTTTC
* * *
9233799 -GAAATTTTCTTGTTTTC
1 AAAAAATTTCGTGTTTTC
9233816 AAAAAATTTTCGTG-TTTC
1 AAAAAA-TTTCGTGTTTTC
*
9233834 -AAAAATCCTCGTGTTTTC
1 AAAAAAT-TTCGTGTTTTC
*
9233852 -AAAAATTCCG-GTGTTTC
1 AAAAAATTTCGTGT-TTTC
9233869 AAAAAATTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
**
9233887 --AAAATTTCCG-GTGATC
1 AAAAAATTT-CGTGTTTTC
*
9233903 AAAAAAAATTTCATGTTTTC
1 --AAAAAATTTCGTGTTTTC
9233923 AAAAAAATTTCGTG-TTTC
1 -AAAAAATTTCGTGTTTTC
*
9233941 -AAAAATTATTGTGTTTTC
1 AAAAAATT-TCGTGTTTTC
*
9233959 -AAAAATTCCGGTGTTTT-
1 AAAAAATTTC-GTGTTTTC
*
9233976 AAAAATTTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
**
9233994 -AAAAATTTCG-GTGATC
1 AAAAAATTTCGTGTTTTC
**
9234010 AAATATTTTTTTCGTGTTTTC
1 AAA-A--AATTTCGTGTTTTC
*
9234031 AAAAAATTTTCATG-TTTC
1 AAAAAA-TTTCGTGTTTTC
* *
9234049 AAAAATTTTCATGTTTTC
1 AAAAAATTTCGTGTTTTC
* *
9234067 AAGAAAATTCCTATGTTTT-
1 AA-AAAATTTC-GTGTTTTC
9234086 -AAAAATTTCCGTGTTTTC
1 AAAAAATTT-CGTGTTTTC
* *
9234104 AAAAATTTTCGTGTTTTT
1 AAAAAATTTCGTGTTTTC
* * *
9234122 AAGAATTTTCGTG-TCTC
1 AAAAAATTTCGTGTTTTC
*
9234139 -TAAAATTCTCGTGTTTT-
1 AAAAAATT-TCGTGTTTTC
* *
9234156 AAAAATTTTTCGTATTTTC
1 AAAAA-ATTTCGTGTTTTC
**
9234175 AAAAAAATAAC-TG-TTTC
1 -AAAAAATTTCGTGTTTTC
*
9234192 -AAAAATCTTCGTG-TTTA
1 AAAAAAT-TTCGTGTTTTC
*
9234209 AAAAAATTCTCGTATTTT
1 AAAAAATT-TCGTGTTTT
9234227 GATTGGATCG
Statistics
Matches: 344, Mismatches: 59, Indels: 86
0.70 0.12 0.18
Matches are distributed among these distances:
15 6 0.02
16 33 0.10
17 85 0.25
18 121 0.35
19 60 0.17
20 32 0.09
21 7 0.02
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (18 bp):
AAAAAATTTCGTGTTTTC
Found at i:9233820 original size:35 final size:36
Alignment explanation
Indices: 9233762--9234217 Score: 319
Period size: 35 Copynumber: 12.8 Consensus size: 36
9233752 AAAATATTCA
* *
9233762 AAAAAATTTCGTGTTTTCAAAAAAATTCCCATGTTTC
1 AAAAATTTTCGTGTTTTC-AAAAAATTCCCGTGTTTC
* * **
9233799 -GAAATTTTCTTGTTTTCAAAAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
** *
9233834 AAAAATCCTCGTGTTTTC-AAAAATTCCGGTGTTTC
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* * * *
9233869 AAAAAATTTCGTGTTTTC-AAAATTTCCGGTG-ATC
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* * *
9233903 AAAAAAAATTTCATGTTTTCAAAAAAATT-TCGTGTTTC
1 --AAAAATTTTCGTGTTTTC-AAAAAATTCCCGTGTTTC
* *
9233941 AAAAATTATT-GTGTTTTC-AAAAATTCCGGTGTTTT
1 AAAAATT-TTCGTGTTTTCAAAAAATTCCCGTGTTTC
* * *
9233976 AAAAATTTTCGTGTTTTC-AAAAATTTCGGTG-ATC
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* ** *
9234010 AAATATTTTTTTCGTGTTTTCAAAAAATTTTCATGTTTC
1 AAA-A--ATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* ** *
9234049 AAAAATTTTCATGTTTTCAAGAAAATTCCTATGTTTT
1 AAAAATTTTCGTGTTTTCAA-AAAATTCCCGTGTTTC
* ** *
9234086 AAAAATTTCCGTGTTTTC-AAAAATTTTCGTGTTTTT
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTG-TTTC
* * * * *
9234122 AAGAATTTTCGTG-TCTC-TAAAATTCTCGTGTTTT
1 AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* * **
9234156 AAAAATTTTTCGTATTTTCAAAAAAATAAC-TGTTTC
1 AAAAA-TTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
* *
9234192 AAAAATCTTCGTG-TTTAAAAAAATTC
1 AAAAATTTTCGTGTTTTCAAAAAATTC
9234218 TCGTATTTTG
Statistics
Matches: 334, Mismatches: 66, Indels: 41
0.76 0.15 0.09
Matches are distributed among these distances:
34 33 0.10
35 125 0.37
36 100 0.30
37 52 0.16
38 19 0.06
39 5 0.01
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (36 bp):
AAAAATTTTCGTGTTTTCAAAAAATTCCCGTGTTTC
Found at i:9233934 original size:107 final size:106
Alignment explanation
Indices: 9233804--9234107 Score: 385
Period size: 107 Copynumber: 2.8 Consensus size: 106
9233794 GTTTCGAAAT
* **
9233804 TTTCTTGTTTTCAAAAAATTTTCGTGTTTCAAAAATCCTCGTGTTTTCAAAAATTCCGGTGTTTC
1 TTTCATGTTTTCAAAAAATTTTCGTGTTTCAAAAATTATCGTGTTTTCAAAAATTCCGGTGTTT-
9233869 AAAAAATTTCGTGTTTTCAAAATTTCCGGTGATCAAA-AAAAA
65 AAAAAATTTCGTGTTTTCAAAATTT-CGGTGATCAAATAAAAA
* *
9233911 TTTCATGTTTTCAAAAAAATTTCGTGTTTCAAAAATTATTGTGTTTTCAAAAATTCCGGTGTTTT
1 TTTCATGTTTTCAAAAAATTTTCGTGTTTCAAAAATTATCGTGTTTTCAAAAATTCCGGTG-TTT
* ****
9233976 AAAAATTTTCGTGTTTTCAAAAATTTCGGTGATCAAATATTTT
65 AAAAAATTTCGTGTTTTC-AAAATTTCGGTGATCAAATAAAAA
* * * * **
9234019 TTTCGTGTTTTCAAAAAATTTTCATGTTTCAAAAATTTTCATGTTTTCAAGAAAATTCCTATGTT
1 TTTCATGTTTTCAAAAAATTTTCGTGTTTCAAAAATTATCGTGTTTTC-A-AAAATTCCGGTGTT
*
9234084 TTAAAAATTTCCGTGTTTTCAAAA
64 TAAAAAATTT-CGTGTTTTCAAAA
9234108 ATTTTCGTGT
Statistics
Matches: 171, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
107 84 0.49
108 53 0.31
109 15 0.09
110 19 0.11
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (106 bp):
TTTCATGTTTTCAAAAAATTTTCGTGTTTCAAAAATTATCGTGTTTTCAAAAATTCCGGTGTTTA
AAAAATTTCGTGTTTTCAAAATTTCGGTGATCAAATAAAAA
Found at i:9238364 original size:103 final size:101
Alignment explanation
Indices: 9238252--9238445 Score: 221
Period size: 104 Copynumber: 1.9 Consensus size: 101
9238242 CAAAATAATT
* *
9238252 ATCATTTTGAAAAG-AAATCA-GAAAGCTGAAGCCTAAATATTTCAATAGAAATGAAAATAGTAT
1 ATCACTTTGAAAAGAAAATCATG-AAGCTGAAGCCTAAATATTTCAATAGAAATGAAAATAGCA-
* *
9238315 TAAAATAACTTTAGATTTTGAATTCCATTTGAAAAGAAAC
64 TAAAAAAAC--TAGATTTTGAAGTCCATTTGAAAAGAAAC
* * * * *** *
9238355 ATCACTTTGAATAGAAAATCATGAAGTTGAGGGCTGTTTATTTCATTAGAAATGAAAATAGCATA
1 ATCACTTTGAAAAGAAAATCATGAAGCTGAAGCCTAAATATTTCAATAGAAATGAAAATAGCATA
*
9238420 AAAAAACTATATTTTGAAGTCCATTT
66 AAAAAACTAGATTTTGAAGTCCATTT
9238446 CATTATGATG
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
101 17 0.22
103 20 0.26
104 38 0.50
105 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (101 bp):
ATCACTTTGAAAAGAAAATCATGAAGCTGAAGCCTAAATATTTCAATAGAAATGAAAATAGCATA
AAAAAACTAGATTTTGAAGTCCATTTGAAAAGAAAC
Found at i:9238365 original size:18 final size:17
Alignment explanation
Indices: 9238342--9238375 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9238332 TTGAATTCCA
9238342 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9238360 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9238376 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Found at i:9242455 original size:20 final size:20
Alignment explanation
Indices: 9242432--9242484 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
9242422 GAGGGAATAG
9242432 AAAAAATCATGAGGAAGTAC
1 AAAAAATCATGAGGAAGTAC
*
9242452 AAAAAATTTC-T-AGGGAGTAC
1 AAAAAA--TCATGAGGAAGTAC
*
9242472 AGAAAATCATGAG
1 AAAAAATCATGAG
9242485 ATAATATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 21 0.78
21 1 0.04
22 2 0.07
ACGTcount: A:0.51, C:0.09, G:0.21, T:0.19
Consensus pattern (20 bp):
AAAAAATCATGAGGAAGTAC
Found at i:9244779 original size:20 final size:20
Alignment explanation
Indices: 9244748--9244785 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9244738 ACTCTCTAAG
9244748 AAAATAATGAAATGAAATACA
1 AAAATAATGAAAT-AAATACA
9244769 AAAATAA-GAAATAAATA
1 AAAATAATGAAATAAATA
9244786 TATTGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAAATAATGAAATAAATACA
Found at i:9248221 original size:917 final size:924
Alignment explanation
Indices: 9246832--9248684 Score: 2578
Period size: 917 Copynumber: 2.0 Consensus size: 924
9246822 CATATAGTAA
* * * * *
9246832 ATTATTAGGTCAATTAAACATTTTTTTTAGTTTTATTAAACACTTATTGATGATTCTATCTTTTT
1 ATTATTAGGTAAATTAAACAGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTTT
* * *
9246897 TTCTTCAAATTTTTTATTTTTATTTTTGAAAGATTTTTCTATCATTTTGATTGATGTTGAATTAG
66 TTCTTCAAATTTTTTATTTTTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATTAG
* *
9246962 GGAAAAAAGAATTTAAAAATTTATAGATAGCCAGAACGATGGATAAACAAAACTAAAGAAACTCT
131 GAAAAAAAGAATTTAAAAATTTATAGATAGACAGAACGATGGATAAACAAAACTAAAGAAACTCT
* * *
9247027 TTTTTAGATGGCCAATATTTGGTGAAAATGGTGAAAACGTGAGTGATGATATCCAACAAAATAAT
196 TTTTTACATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAACAAAATAAT
* *
9247092 ATTTTGGAAGTGTTCAACAATGGTTATTTTGAGAATATTCAAAATATAGTTGTAGCAGGGGATGA
261 ATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCAGGGGATGA
*
9247157 AGTGTAAGTGTTTCTTAATTATTCATAGTTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTGG
326 AGTGTAAGTGTTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTGG
*
9247222 CAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCGTATCGTGGGATTACAAGAA
391 CAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGGGATTACAAGAA
9247287 GCTCCTGAGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGAA
456 GCTCCTGAGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGAA
* * * **
9247352 TCCAGTGGTAAATTTTCATTTTCTTTGTTTTGTTCA-TTTTTTTATACTTTGTTAG-AA-GT-TT
521 TCCAGTGGTAAATTTTCATTTTCTTTATTTTGTTCAGTGTTTTGATACTGGGTTAGAAATGTATT
* * * *
9247413 A-GTC-C-GATCTAATTTGTTAAACATAAAATATTTCTAGTCACTCCTAAAGCAAATCTATGATG
586 ACGTCTCTGACCTAATTTGCTAAACATAAAATATTTCTAGTCACTCCTAAAACAAATCTATGAAG
** ** ** *** * *
9247475 CTAAGGTTCATGTTAATCACATTTTTTCAGGAAAAAA-AAACCCAGATTTCTTTA-GAGTA-GCA
651 CTAAGGTTCATGTTAATCAC-TTTTTTCAACAAAAAAGAAACAAAGA-AACAAAAGGA-AACCCA
* *
9247537 AA-AAC-A-AAAAAAAAAAAACCC-AGAATTTAAAGTCTATTTGAAGATGGCCACTATCATTTTG
713 AATAACTAGAAAAAAAAAAAACCCTAGAATTTAAAGTCTATTTGAAGATGACCAATATCATTTTG
* * *
9247598 AAAAGAAAATCAAACCTGTTTATTTCAATACAAATGAAAACAGAATTAAAAGACCCTACTTTTTG
778 AAAAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAACAGAATGAAAAGACCCTACATTTTG
* *
9247663 AAGTTTATTTGATGATGACTAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGTTGAAGCCTA
843 AAGTTTATTTGATGATGACCAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGCTGAAGCCTA
*
9247728 ATTATTTCAATAGATAG
908 AATATTTCAATAGATAG
*
9247745 ATTATTAGGTAAATTAAACTAGTTTTTTTAATTTTATTAAACATTTATAGATGATTCTACCTTTT
1 ATTATTAGGTAAATTAAAC-AGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTT
* *
9247810 TTTCTTCAAATTTTTTATTTTTTAATTTTCCAAGATTTTTCTATCATTTTGATTGATGCTG-GTT
65 TTTCTTCAAATTTTTTA-TTTTTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATT
* * * * *
9247874 CAGGAAAAAAAGAATTTAAAATTTTATAGATAGATA-AACTTATAGG-TAAACTAAACTAACA-C
129 -AGGAAAAAAAGAATTTAAAAATTTATAGATAGACAGAAC-GAT-GGATAAACAAAACTAA-AGA
* * *
9247936 ATCTTTTTTTTTTTACATGGCCAATA-TAGGTGGAAATGGTGAAAACATGAGTGATGATATCCAA
190 AAC---TCTTTTTTACATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAA
9248000 CAAAATAATATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGC
252 CAAAATAATATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGC
* *
9248065 AGGGGATGAAGTGTAAGTGTTTTTTTAATTATTCTTAATTTTCCCTAGGGATTTTTCTTTCAAAA
317 AGGGGATGAAGTGTAAGTG-TTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAA
*
9248130 ATGGATTTGGCAAGCA-TTTAA-TTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATGGTGG
381 ATGGATTTGGCAAG-AGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGG
* * * *
9248193 GATTAGAAGAAGCTCCTGGGTATGAAATTGAGGTTAATTATAACCATTTTGGGGCAAATCCTCCT
445 GATTACAAGAAGCTCCTGAGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCT
* *
9248258 CCTGAAATGAATCCAGTGGTAATTTTTCATTTTTTTTATTTTGTTCAGTGTTTTGATACTGGGTT
510 CCTGAAATGAATCCAGTGGTAAATTTTCATTTTCTTTATTTTGTTCAGTGTTTTGATACTGGGTT
9248323 AGAAAATGTATTACTCTCTGTCAGTTTTATCTGACCTAATTTGCTAAACATAAAATATTTCTAGT
575 AG-AAATGTATTA----C-GTC-------TCTGACCTAATTTGCTAAACATAAAATATTTCTAGT
* * *
9248388 CATTCCTAAAACAAATCTATGAAGCTAAGGTTCATGTTAATCACTTTTTTTAACAAAAAAGAAAG
627 CACTCCTAAAACAAATCTATGAAGCTAAGGTTCATGTTAATCACTTTTTTCAACAAAAAAGAAAC
* ** ** * *
9248453 AAAGAAAGAAAAGGAAACCCAAATTTCTTTAGAGTACAAAAAAGCCCTAGAATTTAAAGTCTATT
692 AAAGAAACAAAAGGAAACCCAAATAAC--TAGAAAAAAAAAAAACCCTAGAATTTAAAGTCTATT
* **
9248518 TGATGATGACCAATATCATTTTGAAAAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAGTA
755 TGAAGATGACCAATATCATTTTGAAAAGAAAATCAAACCTGTTTATTTAAATACAAATGAAAACA
*
9248583 GAATGAAAAGACCCTACATTTTGAAGTTTATTTGATGATGACCAAAATAATTATCATTTTGAAAA
820 GAATGAAAAGACCCTACATTTTGAAGTTTATTTGATGATGACCAAAATAATTATAATTTTGAAAA
*
9248648 GAAAATCAGAAAGCTGAAGCCTAAATATTTCAATAGA
885 GAAAATCAAAAAGCTGAAGCCTAAATATTTCAATAGA
9248685 AATGAAAATA
Statistics
Matches: 820, Mismatches: 80, Indels: 50
0.86 0.08 0.05
Matches are distributed among these distances:
913 18 0.02
914 62 0.08
915 86 0.10
916 3 0.00
917 262 0.32
918 94 0.11
919 1 0.00
920 2 0.00
921 2 0.00
922 3 0.00
928 3 0.00
936 16 0.02
937 84 0.10
938 1 0.00
941 1 0.00
942 11 0.01
943 171 0.21
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (924 bp):
ATTATTAGGTAAATTAAACAGTTTTTTTAATTTTATTAAACACTTATAGATGATTCTACCTTTTT
TTCTTCAAATTTTTTATTTTTAATTTTCAAAGATTTTTCTATCATTTTGATTGATGCTGAATTAG
GAAAAAAAGAATTTAAAAATTTATAGATAGACAGAACGATGGATAAACAAAACTAAAGAAACTCT
TTTTTACATGGCCAATATTAGGTGAAAATGGTGAAAACATGAGTGATGATATCCAACAAAATAAT
ATTTTGGAAGTGTTCAACAATGGCTATTTTGAGAATATTCAAAATATAATTGTAGCAGGGGATGA
AGTGTAAGTGTTTCTTAATTATTCATAATTTTCCCTAGGGATTTTTCTTTCAAAAATGGATTTGG
CAAGAGTTTAATTTTTTTCTTCTTCTTTTCTTTTGGCAATTAGTCCTATCGTGGGATTACAAGAA
GCTCCTGAGCATGAAATTGAGGTTAATTATAACCAGTTTGGGGCAAATCCTCCTCCTGAAATGAA
TCCAGTGGTAAATTTTCATTTTCTTTATTTTGTTCAGTGTTTTGATACTGGGTTAGAAATGTATT
ACGTCTCTGACCTAATTTGCTAAACATAAAATATTTCTAGTCACTCCTAAAACAAATCTATGAAG
CTAAGGTTCATGTTAATCACTTTTTTCAACAAAAAAGAAACAAAGAAACAAAAGGAAACCCAAAT
AACTAGAAAAAAAAAAAACCCTAGAATTTAAAGTCTATTTGAAGATGACCAATATCATTTTGAAA
AGAAAATCAAACCTGTTTATTTAAATACAAATGAAAACAGAATGAAAAGACCCTACATTTTGAAG
TTTATTTGATGATGACCAAAATAATTATAATTTTGAAAAGAAAATCAAAAAGCTGAAGCCTAAAT
ATTTCAATAGATAG
Found at i:9248749 original size:18 final size:17
Alignment explanation
Indices: 9248726--9248759 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9248716 TTGAATTCCA
9248726 TTTGAAAAGAAACATCAC
1 TTTGAAAAGAAA-ATCAC
*
9248744 TTTGAATAGAAAATCA
1 TTTGAAAAGAAAATCA
9248760 TGAAGTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TTTGAAAAGAAAATCAC
Found at i:9249764 original size:18 final size:18
Alignment explanation
Indices: 9249725--9249767 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
9249715 TGATTTTATC
*
9249725 TTTTTTTTTCTTCAAA-T
1 TTTTTTTTTCTTCAAAGG
*
9249742 TTTTTTTATTTTTCAAAGG
1 TTTTTTT-TTCTTCAAAGG
9249761 TTTTTTT
1 TTTTTTT
9249768 ATTATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 8 0.36
19 7 0.32
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (18 bp):
TTTTTTTTTCTTCAAAGG
Found at i:9249764 original size:19 final size:18
Alignment explanation
Indices: 9249725--9249770 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
9249715 TGATTTTATC
*
9249725 TTTTTTT-TTCTTCAAAT
1 TTTTTTTATTCTTCAAAG
*
9249742 TTTTTTTATTTTTCAAAGG
1 TTTTTTTATTCTTCAAA-G
9249761 TTTTTTTATT
1 TTTTTTTATT
9249771 ATTATTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 8 0.32
19 10 0.40
ACGTcount: A:0.17, C:0.07, G:0.04, T:0.72
Consensus pattern (18 bp):
TTTTTTTATTCTTCAAAG
Found at i:9260213 original size:85 final size:84
Alignment explanation
Indices: 9260081--9260341 Score: 235
Period size: 85 Copynumber: 3.1 Consensus size: 84
9260071 ATAAACGCTA
* * ** *
9260081 CTAAAGGTTAGGGTCTTTAGCGGCGTTTTTGGT--AAAGCACCATTAAAGACCATGACCTTTAGC
1 CTAAAGATTAGGGTCTTTAGCGGCGATTTTCCTACAAAGCACC--TAAAGACCATGACATTTAGC
9260144 GGCGTTTTTCCTACAAACGCCG
64 GGCG-TTTTCCTACAAACGCCG
9260166 CTAAAGATTAGGGTCTTTAGCGGCGATTTTCCTACAAAGC-CGCTAAAGACCATGACATTTAGCG
1 CTAAAGATTAGGGTCTTTAGCGGCGATTTTCCTACAAAGCAC-CTAAAGACCATGACATTTAGCG
* ** *
9260230 GTGCATTCCTTATAAACGCCG
65 GCGTTTTCC-TACAAACGCCG
** * ** * * *
9260251 CTAAAGACCACGACCTTTAGCGGC-ACTTTTCCCAC-AAGCGCTACTAAAGACCATGACATTTAA
1 CTAAAGATTAGGGTCTTTAGCGGCGA-TTTTCCTACAAAGCAC--CTAAAGACCATGACATTTAG
* *
9260314 TGGCGCTTTTCCAACAAACGCCG
63 CGGCG-TTTTCCTACAAACGCCG
9260337 CTAAA
1 CTAAA
9260342 AACCCTTACC
Statistics
Matches: 145, Mismatches: 23, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
84 9 0.06
85 89 0.61
86 37 0.26
87 10 0.07
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (84 bp):
CTAAAGATTAGGGTCTTTAGCGGCGATTTTCCTACAAAGCACCTAAAGACCATGACATTTAGCGG
CGTTTTCCTACAAACGCCG
Found at i:9260298 original size:43 final size:43
Alignment explanation
Indices: 9260124--9260383 Score: 184
Period size: 43 Copynumber: 6.1 Consensus size: 43
9260114 AAAGCACCAT
* * * *
9260124 TAAAGACCATGACCTTTAGCGGCGTTTTTCCTACAAACGCCGC
1 TAAAGACCACGACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
** * ** * * *
9260167 TAAAGATTAGGGTCTTTAGCGGCGATTTTCCTACAAA-GCCGC
1 TAAAGACCACGACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
* * * * * * *
9260209 TAAAGACCATGACATTTAGCGGTGC-ATTCCTTATAAACGCCGC
1 TAAAGACCACGACCTTTAGCGGCGCTTTTCC-AACAAACGCCAC
* * * *
9260252 TAAAGACCACGACCTTTAGCGGCACTTTTCCCACAAGCGCTAC
1 TAAAGACCACGACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
* * ** *
9260295 TAAAGACCATGACATTTAATGGCGCTTTTCCAACAAACGCCGC
1 TAAAGACCACGACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
* * ** *
9260338 TAAAAACC-CTTACCTTTAGCGGCGCTTTTTTAAAAAACGCCAC
1 TAAAGACCAC-GACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
9260381 TAA
1 TAA
9260384 TTTTGGCAGA
Statistics
Matches: 168, Mismatches: 45, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
41 4 0.02
42 27 0.16
43 133 0.79
44 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
TAAAGACCACGACCTTTAGCGGCGCTTTTCCAACAAACGCCAC
Found at i:9260340 original size:86 final size:85
Alignment explanation
Indices: 9260124--9260366 Score: 251
Period size: 85 Copynumber: 2.8 Consensus size: 85
9260114 AAAGCACCAT
* * ** * **
9260124 TAAAGACCATGACCTTTAGCGGCGTTTTTCCTACAAACGCCGCTAAAGATTAGGGTCTTTAGCGG
1 TAAAGACCATGACATTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCACGACCTTTAGCGG
* *
9260189 CGA-TTTTCCTACAAAGCCGC
66 C-ACTTTTCCCACAAAGCCAC
* * *
9260209 TAAAGACCATGACATTTAGCGGTGC-ATTCCTTATAAACGCCGCTAAAGACCACGACCTTTAGCG
1 TAAAGACCATGACATTTAGCGGCGCTTTTCC-TACAAACGCCGCTAAAGACCACGACCTTTAGCG
9260273 GCACTTTTCCCAC-AAGCGCTAC
65 GCACTTTTCCCACAAAGC-C-AC
** * * *
9260295 TAAAGACCATGACATTTAATGGCGCTTTTCCAACAAACGCCGCTAAAAACC-CTTACCTTTAGCG
1 TAAAGACCATGACATTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAC-GACCTTTAGCG
*
9260359 GCGCTTTT
65 GCACTTTT
9260367 TTAAAAAACG
Statistics
Matches: 131, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
84 9 0.07
85 61 0.47
86 57 0.44
87 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (85 bp):
TAAAGACCATGACATTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCACGACCTTTAGCGG
CACTTTTCCCACAAAGCCAC
Found at i:9260588 original size:19 final size:19
Alignment explanation
Indices: 9260564--9260601 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
9260554 TACAAAAATG
*
9260564 TTAAAAGTTAAAATGATAA
1 TTAAAAGTCAAAATGATAA
9260583 TTAAAAGTCAAAATGATAA
1 TTAAAAGTCAAAATGATAA
9260602 AAATATTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (19 bp):
TTAAAAGTCAAAATGATAA
Found at i:9263281 original size:12 final size:12
Alignment explanation
Indices: 9263264--9263289 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9263254 CAAAGTCCGT
9263264 GCATGCATGAAA
1 GCATGCATGAAA
9263276 GCATGCATGAAA
1 GCATGCATGAAA
9263288 GC
1 GC
9263290 TTGCTATAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.15
Consensus pattern (12 bp):
GCATGCATGAAA
Found at i:9264281 original size:17 final size:19
Alignment explanation
Indices: 9264259--9264300 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
9264249 TGGTAATTAG
9264259 TGAGCTTGCAT-ATCT-GA
1 TGAGCTTGCATCATCTAGA
*
9264276 TGAGCTTGCATCTTCTAGA
1 TGAGCTTGCATCATCTAGA
9264295 TGAGCT
1 TGAGCT
9264301 CGTAGGTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
18 3 0.14
19 8 0.36
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (19 bp):
TGAGCTTGCATCATCTAGA
Found at i:9269765 original size:10 final size:10
Alignment explanation
Indices: 9269743--9269777 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
9269733 AGGGTTAGAG
*
9269743 AGAAAAA-AT
1 AGAAAAAGAA
9269752 AGAAAAAGAA
1 AGAAAAAGAA
9269762 AGAAAAAGAA
1 AGAAAAAGAA
9269772 AGAAAA
1 AGAAAA
9269778 CAAATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (10 bp):
AGAAAAAGAA
Found at i:9270001 original size:28 final size:28
Alignment explanation
Indices: 9269910--9270003 Score: 91
Period size: 28 Copynumber: 3.3 Consensus size: 28
9269900 GTCAGCCTAG
**
9269910 CAGCAGCAGACCAACCTAGCAGACTCACTC
1 CAGCAGCAGACCAACCTAGCAGAC-C-CAA
* * *
9269940 CACCAGCAGCCCAATCTAGTCAG-CCCAA
1 CAGCAGCAGACCAACCTAG-CAGACCCAA
**
9269968 TGGCAGCAGACCAACCTAGCAGACCCAA
1 CAGCAGCAGACCAACCTAGCAGACCCAA
9269996 CAGCAGCA
1 CAGCAGCA
9270004 ACAGACCCAC
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
27 3 0.06
28 26 0.52
29 1 0.02
30 17 0.34
31 3 0.06
ACGTcount: A:0.34, C:0.39, G:0.18, T:0.09
Consensus pattern (28 bp):
CAGCAGCAGACCAACCTAGCAGACCCAA
Found at i:9282452 original size:75 final size:75
Alignment explanation
Indices: 9282336--9282713 Score: 479
Period size: 75 Copynumber: 5.0 Consensus size: 75
9282326 TCATTTCCTT
* * * * * * * *
9282336 TTTC-ATTTTTCAAAAAATCAAGTTATAATTCGAGAGGTGAGTTGAGCCTCGGGTCTCATGTTGA
1 TTTCTATTTTTC-AAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGA
*
9282400 GGTATTTTCAC
65 GGTATTTTCAA
* ** * * * *
9282411 TTTTTATTTTTCAAAGATCAACTCATAATTTGAGACGTGAGTTGAGCCTCGGCTCGCACGCCGAG
1 TTTCTATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGAG
9282476 GTATTTTCAA
66 GTATTTTCAA
* * * *
9282486 TTTCTATTTTTCAAAGATCAACTCATAATCTGAGAGGTGATTTGAGCTTCGGGTCGCACGCCAAG
1 TTTCTATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGAG
9282551 GTATTTTCAA
66 GTATTTTCAA
* * *
9282561 TTTCTATTTTTCAAATATCAACTCATAATCCGAGAGGTGAGTTGAACTTCGGGTCGCACGTCAAG
1 TTTCTATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGAG
*
9282626 GTATTTTGAA
66 GTATTTTCAA
* * * *
9282636 TTTCTGTTTTTCAAAGATCAACACATAATCCGAGAGGTAAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTCTATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGAG
*
9282701 GTATTTTAAA
66 GTATTTTCAA
9282711 TTT
1 TTT
9282714 AAGTCTTTTA
Statistics
Matches: 269, Mismatches: 33, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
75 262 0.97
76 7 0.03
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTCTATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCGCACGTCGAG
GTATTTTCAA
Found at i:9283332 original size:27 final size:29
Alignment explanation
Indices: 9283275--9283344 Score: 99
Period size: 27 Copynumber: 2.5 Consensus size: 29
9283265 AATATACTAT
* *
9283275 TTACATTTTGGCCCCTATTTTTTTTAAAA
1 TTACATTTTGGCCCCTATCTTTTCTAAAA
*
9283304 TTACATTTTGGCCTC-A-CTTTTCTAAAA
1 TTACATTTTGGCCCCTATCTTTTCTAAAA
9283331 TTACATTTTGGCCC
1 TTACATTTTGGCCC
9283345 TGAGAGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.59
28 1 0.03
29 14 0.38
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (29 bp):
TTACATTTTGGCCCCTATCTTTTCTAAAA
Found at i:9284369 original size:12 final size:12
Alignment explanation
Indices: 9284348--9284386 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
9284338 TTAGAGAGAA
*
9284348 AAAGAGAAAAAG
1 AAAGAAAAAAAG
9284360 AAAGAAAAAAAG
1 AAAGAAAAAAAG
*
9284372 AAAAATAAAAAAG
1 AAAGA-AAAAAAG
9284385 AA
1 AA
9284387 CAGTCGGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:9284612 original size:46 final size:46
Alignment explanation
Indices: 9284524--9284614 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
9284514 ACCAACCCAA
* ** *
9284524 CAGACTCACTCCAGCAGCAGCCTAATCCAATCGGCCCGTCCAGCAG
1 CAGACTCACTCCAGCAGCAGCCCAATCCAATCAACCCATCCAGCAG
*
9284570 CAGACTCACTCCAGCCA-CAGCCCAATCCAGTCAACCCATCCAGCA
1 CAGACTCACTCCAG-CAGCAGCCCAATCCAATCAACCCATCCAGCA
9284615 ACAGCCCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 37 0.95
47 2 0.05
ACGTcount: A:0.29, C:0.44, G:0.15, T:0.12
Consensus pattern (46 bp):
CAGACTCACTCCAGCAGCAGCCCAATCCAATCAACCCATCCAGCAG
Found at i:9285701 original size:17 final size:17
Alignment explanation
Indices: 9285681--9285716 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9285671 GGTGACCTCA
* *
9285681 CACATTTGATGAGTTTG
1 CACACTTGATGAGCTTG
9285698 CACACTTGATGAGCTTG
1 CACACTTGATGAGCTTG
9285715 CA
1 CA
9285717 TCTTTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (17 bp):
CACACTTGATGAGCTTG
Found at i:9291214 original size:30 final size:30
Alignment explanation
Indices: 9291160--9291230 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
9291150 TCCACCCTTA
* * *
9291160 AAATATTTTCACAATTAATCCTTCAAATTTT
1 AAATATTTACAC-TTTAACCCTTCAAATTTT
**
9291191 TCATATTTACACTTTAACCCTTCAAATTTT
1 AAATATTTACACTTTAACCCTTCAAATTTT
9291221 AAATATTTAC
1 AAATATTTAC
9291231 TCCTGGGCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (30 bp):
AAATATTTACACTTTAACCCTTCAAATTTT
Found at i:9304003 original size:40 final size:40
Alignment explanation
Indices: 9303959--9304096 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
9303949 AACACACCAG
*
9303959 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * * * * *
9303999 TTTGACACCTAGGGTCTCATCGGCTAAACCAAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * *
9304037 -TTGGCACCTAGTGCCTCATCGAATTAATCCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGA-TAATCCGAAGTAATAA
*
9304077 TTTGACACCCAGTGTCTCAT
1 TTTGACACCCAGTGCCTCAT
9304097 TGACTCGAAG
Statistics
Matches: 77, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 18 0.23
38 11 0.14
39 2 0.03
40 30 0.39
41 16 0.21
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
Found at i:9305002 original size:4 final size:4
Alignment explanation
Indices: 9304995--9305089 Score: 93
Period size: 4 Copynumber: 22.0 Consensus size: 4
9304985 TTTCTCCTTC
*
9304995 CTTT CTTT CCTT -TTT CTTTT CTTTT CTTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT C-TTT C-TTT C-TTT CTTT CTTT CTTT CTTT CTTT
*
9305045 CTTT CATTTT CTTT CTGTTT CGTTT CTAT CTTT CTTT CTTT CTTT
1 CTTT C--TTT CTTT C--TTT C-TTT CTTT CTTT CTTT CTTT CTTT
9305090 ATTCTTTATT
Statistics
Matches: 81, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
3 2 0.02
4 52 0.64
5 19 0.23
6 8 0.10
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:9305029 original size:30 final size:30
Alignment explanation
Indices: 9304995--9305089 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 30
9304985 TTTCTCCTTC
9304995 CTTTCTTTCCTT-TTTCTTTTCTTTTC-TTTT
1 CTTTCTTTCCTTCTTTC-TTTC-TTTCATTTT
*
9305025 CTTTCTTTCTTTCTTTCTTTCTTTCATTTT
1 CTTTCTTTCCTTCTTTCTTTCTTTCATTTT
* *
9305055 CTTTCTGT--TTCGTTTCTATCTTTC--TTT
1 CTTTCTTTCCTTC-TTTCTTTCTTTCATTTT
9305082 CTTTCTTT
1 CTTTCTTT
9305090 ATTCTTTATT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
27 10 0.17
28 3 0.05
29 15 0.26
30 26 0.45
31 4 0.07
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (30 bp):
CTTTCTTTCCTTCTTTCTTTCTTTCATTTT
Found at i:9305055 original size:45 final size:46
Alignment explanation
Indices: 9304995--9305089 Score: 140
Period size: 45 Copynumber: 2.1 Consensus size: 46
9304985 TTTCTCCTTC
* * *
9304995 CTTTCTTTCCTTTTTCTTTTCT-TTTCTTTTCTTTCTTTCTTTCTTT
1 CTTTCTTTCCATTTTC-TTTCTGTTTCGTTTCTATCTTTCTTTCTTT
9305041 CTTTCTTT-CATTTTCTTTCTGTTTCGTTTCTATCTTTCTTTCTTT
1 CTTTCTTTCCATTTTCTTTCTGTTTCGTTTCTATCTTTCTTTCTTT
9305086 CTTT
1 CTTT
9305090 ATTCTTTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 5 0.11
45 32 0.71
46 8 0.18
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (46 bp):
CTTTCTTTCCATTTTCTTTCTGTTTCGTTTCTATCTTTCTTTCTTT
Found at i:9305083 original size:41 final size:39
Alignment explanation
Indices: 9304995--9305089 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 39
9304985 TTTCTCCTTC
* *
9304995 CTTTCTTTCCTT-TTTCTTTTCTTTTCTTTTCTTTCTTT
1 CTTTCTTTCTTTCTTTCTTTTCTTTTCTTTTCTTTCTAT
9305033 CTTTCTTTCTTTCTTTCATTTTC-TTTCTGTTTCGTTTCTAT
1 CTTTCTTTCTTTCTTTC-TTTTCTTTTCT-TTTC-TTTCTAT
9305074 CTTTCTTTCTTTCTTT
1 CTTTCTTTCTTTCTTT
9305090 ATTCTTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
38 11 0.22
39 9 0.18
40 9 0.18
41 22 0.43
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (39 bp):
CTTTCTTTCTTTCTTTCTTTTCTTTTCTTTTCTTTCTAT
Found at i:9306460 original size:71 final size:71
Alignment explanation
Indices: 9306344--9306484 Score: 282
Period size: 71 Copynumber: 2.0 Consensus size: 71
9306334 CTGTGTTCGT
9306344 GAAAATCAGACCCAGGTTAGTTTTGATTTGGCAGCGCACAAGTCGAAGGCTAGAAGTCTTCCAGC
1 GAAAATCAGACCCAGGTTAGTTTTGATTTGGCAGCGCACAAGTCGAAGGCTAGAAGTCTTCCAGC
9306409 TTCTAC
66 TTCTAC
9306415 GAAAATCAGACCCAGGTTAGTTTTGATTTGGCAGCGCACAAGTCGAAGGCTAGAAGTCTTCCAGC
1 GAAAATCAGACCCAGGTTAGTTTTGATTTGGCAGCGCACAAGTCGAAGGCTAGAAGTCTTCCAGC
9306480 TTCTA
66 TTCTA
9306485 AGCACAAATT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (71 bp):
GAAAATCAGACCCAGGTTAGTTTTGATTTGGCAGCGCACAAGTCGAAGGCTAGAAGTCTTCCAGC
TTCTAC
Found at i:9306980 original size:102 final size:102
Alignment explanation
Indices: 9306846--9307039 Score: 352
Period size: 102 Copynumber: 1.9 Consensus size: 102
9306836 TGGGTTTTTA
* *
9306846 GGGTTTAGTTTTTATATCCATCTTTTGTACTCTTCGTTCTTTTGCCATTATAATAAAATTATTTT
1 GGGTTTAGTTTTTATATCAATCTTTTGTACTCTTCGTTCTTTTGCCATTATAATAAAATCATTTT
9306911 TGCCCATGGTTTTTTATCCTCTTTGGAAGAGTTTTCG
66 TGCCCATGGTTTTTTATCCTCTTTGGAAGAGTTTTCG
* *
9306948 GGGTTTAGTTTTTATCTCAATCTTTTGTACTCTTCGTTCTTTTGCCATTATAGTAAAATCATTTT
1 GGGTTTAGTTTTTATATCAATCTTTTGTACTCTTCGTTCTTTTGCCATTATAATAAAATCATTTT
9307013 TGCCCATGGTTTTTTATCCTCTTTGGA
66 TGCCCATGGTTTTTTATCCTCTTTGGA
9307040 GGGGTTTTTC
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 88 1.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (102 bp):
GGGTTTAGTTTTTATATCAATCTTTTGTACTCTTCGTTCTTTTGCCATTATAATAAAATCATTTT
TGCCCATGGTTTTTTATCCTCTTTGGAAGAGTTTTCG
Found at i:9308854 original size:63 final size:62
Alignment explanation
Indices: 9308751--9308887 Score: 177
Period size: 63 Copynumber: 2.2 Consensus size: 62
9308741 TCTGTGTGTC
* * * *
9308751 TCACACGGCCTGATACACGCCCGTGTCATCTGCTCGTGTGGTCCTAAATCACAAATAGTGAG
1 TCACACGGCCTGACACACGCCCGTGTCATCTGCCCATGTGGTCCTAAATCACAAACAGTGAG
* * *
9308813 TCACACGGCCTAGACACACGCTCGTGTC-TCTGGCCCATGTGGTCCTTAATGACAAACAGTGAG
1 TCACACGGCCT-GACACACGCCCGTGTCATCT-GCCCATGTGGTCCTAAATCACAAACAGTGAG
*
9308876 TCACATGGCCTG
1 TCACACGGCCTG
9308888 CTACACGATC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
62 15 0.23
63 50 0.77
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (62 bp):
TCACACGGCCTGACACACGCCCGTGTCATCTGCCCATGTGGTCCTAAATCACAAACAGTGAG
Found at i:9309491 original size:14 final size:15
Alignment explanation
Indices: 9309466--9309494 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9309456 AAAATGAATT
9309466 AAGAACGAAAAGAAA
1 AAGAACGAAAAGAAA
9309481 AAGAA-GAAAAGAAA
1 AAGAACGAAAAGAAA
9309495 GTGAGGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAACGAAAAGAAA
Found at i:9310841 original size:21 final size:21
Alignment explanation
Indices: 9310817--9310867 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
9310807 TTTGCCTAAG
* *
9310817 ATGTGAATTGGATTGAATTGA
1 ATGTAAATTGGATTAAATTGA
*
9310838 ATGTAAATTGTATTAAATTG-
1 ATGTAAATTGGATTAAATTGA
9310858 ATGTCAAATT
1 ATGT-AAATT
9310868 CATTCGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (21 bp):
ATGTAAATTGGATTAAATTGA
Found at i:9311355 original size:26 final size:26
Alignment explanation
Indices: 9311326--9311382 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
9311316 TCGTTATATA
9311326 GCTCTTCATGAGCTTCCCAATTAAAG
1 GCTCTTCATGAGCTTCCCAATTAAAG
** ** *
9311352 GCTCTTTGTGAGCTTCCTGATTAATG
1 GCTCTTCATGAGCTTCCCAATTAAAG
9311378 GCTCT
1 GCTCT
9311383 CCGGCGCTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCAATTAAAG
Found at i:9311462 original size:25 final size:25
Alignment explanation
Indices: 9311326--9311463 Score: 77
Period size: 25 Copynumber: 5.5 Consensus size: 25
9311316 TCGTTATATA
* ** *
9311326 GCTCTTCATGAGCTTCCCAATTAAAG
1 GCTCTTC-GGAGCTTCCTGATTAATG
*
9311352 GCTCTTTGTGAGCTTCCTGATTAATG
1 GCTCTTCG-GAGCTTCCTGATTAATG
* * * *
9311378 GCTCTCCGGCGCTACCT-AAT-ATG
1 GCTCTTCGGAGCTTCCTGATTAATG
* * *
9311401 GCTCGTT-TGAACTTCCCGA-TATATG
1 GCTC-TTCGGAGCTTCCTGATTA-ATG
* * *
9311426 GCTATCCTGAGCTTCCTGATTAATG
1 GCTCTTCGGAGCTTCCTGATTAATG
9311451 GCTCTTCGGAGCT
1 GCTCTTCGGAGCT
9311464 ACCCGTTATT
Statistics
Matches: 82, Mismatches: 23, Indels: 15
0.68 0.19 0.12
Matches are distributed among these distances:
23 13 0.16
24 5 0.06
25 36 0.44
26 28 0.34
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
GCTCTTCGGAGCTTCCTGATTAATG
Found at i:9311499 original size:73 final size:73
Alignment explanation
Indices: 9311360--9311516 Score: 165
Period size: 73 Copynumber: 2.2 Consensus size: 73
9311350 AGGCTCTTTG
* * ** *
9311360 TGAGCTTCCTGATTAATGGCTCTCCGGCGCTACCTAATATGGCTCGTTTGAACTTCCCGATATAT
1 TGAGCTTCCTGATTAATGGCTCTCCGGAGCTACCTAATATGGCCCGCATGAACTTCCCAATATAT
*
9311425 GGCTATCC
66 GGCTATCA
* * * **
9311433 TGAGCTTCCTGATTAATGGCTCTTCGGAGCTACCCGTTAT-TGGCCCGCATGAGCTTCTTAAT-T
1 TGAGCTTCCTGATTAATGGCTCTCCGGAGCTA-CC-TAATATGGCCCGCATGAACTTCCCAATAT
* *
9311496 ATGGCTCTTA
64 ATGGCTATCA
9311506 TGAGCTTCCTG
1 TGAGCTTCCTG
9311517 TTATACAGCC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
73 49 0.71
74 17 0.25
75 3 0.04
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (73 bp):
TGAGCTTCCTGATTAATGGCTCTCCGGAGCTACCTAATATGGCCCGCATGAACTTCCCAATATAT
GGCTATCA
Found at i:9324685 original size:21 final size:21
Alignment explanation
Indices: 9324655--9324707 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
9324645 TTACAAAAAT
*
9324655 AATTTAAAAATGACCCATAAA
1 AATTTAAAAAGGACCCATAAA
* * *
9324676 AATTTGAAAAGGATCCATCAA
1 AATTTAAAAAGGACCCATAAA
9324697 AATTTCAAAAA
1 AATTT-AAAAA
9324708 AAGAATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.25
Consensus pattern (21 bp):
AATTTAAAAAGGACCCATAAA
Found at i:9324725 original size:17 final size:17
Alignment explanation
Indices: 9324698--9324746 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
9324688 ATCCATCAAA
*
9324698 ATTTCAAAAAAAGAATT
1 ATTTCATAAAAAGAATT
*
9324715 ATTTTATAAAATA-AATT
1 ATTTCATAAAA-AGAATT
9324732 ATTTCATATAAAAGA
1 ATTTCATA-AAAAGA
9324747 TAAATGAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 21 0.81
18 5 0.19
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (17 bp):
ATTTCATAAAAAGAATT
Found at i:9325682 original size:32 final size:32
Alignment explanation
Indices: 9325628--9325690 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
9325618 AATTTTTAGA
* *
9325628 GGTTGATTTATACGAATCCTTGAAGAAATTAT
1 GGTTGATTAATACAAATCCTTGAAGAAATTAT
9325660 GGTTGATTAATACAAA-CTCTTGAAGAAATTA
1 GGTTGATTAATACAAATC-CTTGAAGAAATTA
9325691 GAATTGATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (32 bp):
GGTTGATTAATACAAATCCTTGAAGAAATTAT
Found at i:9328319 original size:4 final size:4
Alignment explanation
Indices: 9328310--9328336 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
9328300 CATAATACTA
9328310 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
9328337 ATATGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:9328921 original size:7 final size:6
Alignment explanation
Indices: 9328882--9328920 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
9328872 CATTTCACCC
9328882 TTTCTTT TTTCTT TTTCTT TTTCTT TTT-TT TTCTCTT TT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TT-TCTT TT
9328921 CCTCTGAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 4 0.13
6 18 0.60
7 8 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:9331217 original size:19 final size:19
Alignment explanation
Indices: 9331193--9331230 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9331183 TATATATTAG
*
9331193 TAATATTTTATTCATATTT
1 TAATATTTTATTCACATTT
*
9331212 TAATATTTTTTTCACATTT
1 TAATATTTTATTCACATTT
9331231 GTGTAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATATTTTATTCACATTT
Found at i:9335879 original size:26 final size:24
Alignment explanation
Indices: 9335850--9335910 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
9335840 ATAAGTAGAT
9335850 ATATGAATAATAAAAAATAAATATAA
1 ATAT-AATAATAAAAAATAAAT-TAA
* *
9335876 ATATAATTAATCAAAAATTAATTAA
1 ATATAA-TAATAAAAAATAAATTAA
*
9335901 TTATTAATAA
1 ATA-TAATAA
9335911 AATTATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
ATATAATAATAAAAAATAAATTAA
Found at i:9339629 original size:31 final size:30
Alignment explanation
Indices: 9339594--9339662 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
9339584 TTACAATATG
***
9339594 GTTATTGAATTATTCAAATATTTTTATTTAA
1 GTTATTGAATTATTCAAA-AAAATTATTTAA
* *
9339625 GTTATTAAATTATTTAAAAAAATTATTTAA
1 GTTATTGAATTATTCAAAAAAATTATTTAA
9339655 GTTATTGA
1 GTTATTGA
9339663 GATTTAAGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 16 0.50
31 16 0.50
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (30 bp):
GTTATTGAATTATTCAAAAAAATTATTTAA
Found at i:9339638 original size:23 final size:22
Alignment explanation
Indices: 9339595--9339639 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9339585 TACAATATGG
9339595 TTATTGAATTATTCAAATATTT
1 TTATTGAATTATTCAAATATTT
*
9339617 TTATTTAAGTTATT-AAATTATTT
1 TTATTGAA-TTATTCAAA-TATTT
9339640 AAAAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (22 bp):
TTATTGAATTATTCAAATATTT
Found at i:9339968 original size:30 final size:29
Alignment explanation
Indices: 9339934--9340025 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
9339924 TCCAGTGATT
*
9339934 TAAATGAAAACTTTTGGATAGTTTAGTGAC
1 TAAATGAAAACTTTT-CATAGTTTAGTGAC
* ** *
9339964 TAAATTG-TAACTTTTTTTAGTTAAGTGATC
1 TAAA-TGAAAACTTTTCATAGTTTAGTGA-C
* * *
9339994 AAAACGAAAACTTTTCATAATTTAGTGAC
1 TAAATGAAAACTTTTCATAGTTTAGTGAC
9340023 TAA
1 TAA
9340026 TTGTATAGTT
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
29 14 0.30
30 31 0.66
31 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (29 bp):
TAAATGAAAACTTTTCATAGTTTAGTGAC
Found at i:9341835 original size:14 final size:15
Alignment explanation
Indices: 9341818--9341856 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
9341808 TTAATTGACC
9341818 AAATTAAATTAA-AA
1 AAATTAAATTAACAA
*
9341832 AAATCAAATTAACAA
1 AAATTAAATTAACAA
9341847 AAAGTTAAAT
1 AAA-TTAAAT
9341857 AATAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 11 0.52
15 5 0.24
16 5 0.24
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (15 bp):
AAATTAAATTAACAA
Found at i:9346150 original size:12 final size:12
Alignment explanation
Indices: 9346135--9346188 Score: 62
Period size: 11 Copynumber: 4.8 Consensus size: 12
9346125 AACTAATTCT
9346135 CTCTCAAATTTC
1 CTCTCAAATTTC
*
9346147 CTCTC-AATTTA
1 CTCTCAAATTTC
9346158 CTCTCAAA-TTC
1 CTCTCAAATTTC
9346169 CT-TCAAAATTT-
1 CTCTC-AAATTTC
9346180 CTCTCAAAT
1 CTCTCAAAT
9346189 CCATATTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 2 0.06
11 23 0.64
12 11 0.31
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:9346155 original size:23 final size:22
Alignment explanation
Indices: 9346129--9346188 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 22
9346119 TTCACAAACT
9346129 AATTCTCTCTCAAATTTCCTCTC-
1 AATT-TCTCTCAAATTTCCT-TCA
9346152 AATTTACTCTCAAA-TTCCTTCAA
1 AATTT-CTCTCAAATTTCCTTC-A
9346175 AATTTCTCTCAAAT
1 AATTTCTCTCAAAT
9346189 CCATATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 2 0.06
22 14 0.42
23 17 0.52
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTTCTCTCAAATTTCCTTCA
Found at i:9346213 original size:51 final size:51
Alignment explanation
Indices: 9346150--9346247 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
9346140 AAATTTCCTC
9346150 TCAATTTACTCTCAAATTCCTTC-AAAATTTCTCTCAAATCCATATTTAATT
1 TCAATTTACTCTCAAATT-CTTCTAAAATTTCTCTCAAATCCATATTTAATT
* * * * *
9346201 TCAATTTGCTCTCAAGTTCTTCTTAAATTTCTCTTAAATCCCTATTT
1 TCAATTTACTCTCAAATTCTTCTAAAATTTCTCTCAAATCCATATTT
9346248 TTAAATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 4 0.10
51 37 0.90
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (51 bp):
TCAATTTACTCTCAAATTCTTCTAAAATTTCTCTCAAATCCATATTTAATT
Found at i:9346272 original size:10 final size:10
Alignment explanation
Indices: 9346245--9346278 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9346235 TAAATCCCTA
* *
9346245 TTTTTAAATA
1 TTTTTAATTT
9346255 TTTTTAATTT
1 TTTTTAATTT
9346265 TTTTTAATTT
1 TTTTTAATTT
9346275 TTTT
1 TTTT
9346279 ATACCGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:9348089 original size:18 final size:18
Alignment explanation
Indices: 9348062--9348101 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
9348052 CAGGTGTGTT
* *
9348062 TCCTAGCCCTTCTATGTA
1 TCCTAACCCTTATATGTA
9348080 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
9348098 TCCT
1 TCCT
9348102 TTTCTGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.33, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:9348633 original size:60 final size:60
Alignment explanation
Indices: 9348564--9348699 Score: 272
Period size: 60 Copynumber: 2.3 Consensus size: 60
9348554 TTTTTTGAGT
9348564 TATTTTGATATTATTTGATGTAATAACATGAGCTTAATTAATTTGTACAAATATTTTGAA
1 TATTTTGATATTATTTGATGTAATAACATGAGCTTAATTAATTTGTACAAATATTTTGAA
9348624 TATTTTGATATTATTTGATGTAATAACATGAGCTTAATTAATTTGTACAAATATTTTGAA
1 TATTTTGATATTATTTGATGTAATAACATGAGCTTAATTAATTTGTACAAATATTTTGAA
9348684 TATTTTGATATTATTT
1 TATTTTGATATTATTT
9348700 TAGAATTCTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.49
Consensus pattern (60 bp):
TATTTTGATATTATTTGATGTAATAACATGAGCTTAATTAATTTGTACAAATATTTTGAA
Found at i:9351892 original size:25 final size:24
Alignment explanation
Indices: 9351848--9351902 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
9351838 AATGTACATT
*
9351848 TATATATATATTAGCAAAACATATG
1 TATATATATATTAG-AAAACATATA
*
9351873 TATATATATATGGTAG-AAACGTATA
1 TATATATATAT--TAGAAAACATATA
9351898 TATAT
1 TATAT
9351903 TTAATGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 23 0.88
27 3 0.12
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.38
Consensus pattern (24 bp):
TATATATATATTAGAAAACATATA
Found at i:9354859 original size:125 final size:124
Alignment explanation
Indices: 9354619--9355040 Score: 675
Period size: 125 Copynumber: 3.4 Consensus size: 124
9354609 CAAACATGCT
* *
9354619 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTTGGTA
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTTGGTA
* *
9354684 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTTGAAA-TAATTTTTCCAGGACCA
* *
9354744 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCTTGCT
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCTTGGT
* * * *
9354808 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTTCAGGACCT
65 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTCCAGGACCA
* *
9354869 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTTGGTA
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTTGGTA
*
9354934 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTTGAAATTATTTCTTCCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTTGAAATAATTT-TTCCAGGACCA
*
9354994 ACTGTAGCAAAAGCGCATCCAGGAGGGCGCGATTTCACAAATTCTTC
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTC
9355041 GCGTCTACGT
Statistics
Matches: 271, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
124 42 0.15
125 193 0.71
126 36 0.13
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTTGGTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTCCAGGACCA
Found at i:9367505 original size:15 final size:16
Alignment explanation
Indices: 9367477--9367512 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
9367467 TAAAGAACAA
*
9367477 CCTGCTCAACATCATC
1 CCTGCTCAAAATCATC
9367493 CCTG-TCAAAATCATC
1 CCTGCTCAAAATCATC
9367508 CCTGC
1 CCTGC
9367513 CCTGGCTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.25, C:0.42, G:0.08, T:0.25
Consensus pattern (16 bp):
CCTGCTCAAAATCATC
Found at i:9370572 original size:31 final size:31
Alignment explanation
Indices: 9370534--9370594 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
9370524 TTATGAAGTC
*
9370534 TGGTAATCAGTTTGATATGTAGTTGGTTAAA
1 TGGTAATCAGTTTGATATGCAGTTGGTTAAA
9370565 TGGTAATCAGTTTGATATGCAGTTGGTTAA
1 TGGTAATCAGTTTGATATGCAGTTGGTTAA
9370595 GAACAGTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.05, G:0.26, T:0.41
Consensus pattern (31 bp):
TGGTAATCAGTTTGATATGCAGTTGGTTAAA
Found at i:9373954 original size:15 final size:15
Alignment explanation
Indices: 9373934--9373963 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9373924 TCCTATTCCG
9373934 GCGACGGATACGGGT
1 GCGACGGATACGGGT
9373949 GCGACGGATACGGGT
1 GCGACGGATACGGGT
9373964 AGGGGGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGACGGATACGGGT
Found at i:9383114 original size:12 final size:12
Alignment explanation
Indices: 9383097--9383121 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9383087 TCTCTTATTG
9383097 TAATAATTTTTT
1 TAATAATTTTTT
9383109 TAATAATTTTTT
1 TAATAATTTTTT
9383121 T
1 T
9383122 CATTTCGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TAATAATTTTTT
Found at i:9384377 original size:49 final size:49
Alignment explanation
Indices: 9384321--9384467 Score: 206
Period size: 49 Copynumber: 3.0 Consensus size: 49
9384311 TTTATTTTCT
* * *
9384321 CGATGCCATAGTCCAACTATGGTCTTACGC-GTAATCACATATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACAG-AATCACATATCACATAC
* *
9384370 CGATGCCATAGCCCAGCTATGGTCTTACACAGAATCACATAGCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACAGAATCACATATCACATAC
*
9384419 CGATGCCATAGCCCAGCTATGGTCTTACACGGAAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACAG-AATCACAT-ATCACAT
9384468 TTTCACATGT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
49 73 0.84
50 9 0.10
51 5 0.06
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACAGAATCACATATCACATAC
Found at i:9385352 original size:2 final size:2
Alignment explanation
Indices: 9385345--9385377 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
9385335 AGAATCCTAA
*
9385345 AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9385378 GATTTTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:9386198 original size:67 final size:67
Alignment explanation
Indices: 9386090--9386220 Score: 219
Period size: 67 Copynumber: 2.0 Consensus size: 67
9386080 TTTCGAATTC
* * *
9386090 AGAGAGCACACTCCTGCGAACCTCATTTCTTACAGTGGGATTACTC-GTCCAGGCTAAATCCCCT
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTAC-CAGTCCAGGCTAAATACCCT
9386154 GCA
65 GCA
9386157 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATACCCT
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATACCCT
9386221 ACAACGACAA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 1 0.02
67 59 0.98
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATACCCTG
CA
Found at i:9389062 original size:40 final size:39
Alignment explanation
Indices: 9389013--9389106 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 39
9389003 CACTTTTCTA
** *
9389013 AAAACGCCGCTAAAGGTCGAGCATTAGCGGTGATTGTTGG
1 AAAACGCCGCTAAAAAT-AAGCATTAGCGGTGATTGTTGG
* * *
9389053 AAAAGGCCGCTAAAAATAAGCATTAGCGGTGTTTTTTGG
1 AAAACGCCGCTAAAAATAAGCATTAGCGGTGATTGTTGG
**
9389092 AATGCGCCGC-AAAAA
1 AAAACGCCGCTAAAAA
9389107 GCCAAAGCCC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 5 0.11
39 26 0.58
40 14 0.31
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATAAGCATTAGCGGTGATTGTTGG
Found at i:9389203 original size:41 final size:41
Alignment explanation
Indices: 9389142--9389379 Score: 291
Period size: 41 Copynumber: 5.8 Consensus size: 41
9389132 TGAGTTTTTA
9389142 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* *
9389183 GGGACTTTAGCGGCGTTTTTGAA-AATGCGCTGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAA-GCGCCGCTAATGCTC
** * * * *
9389224 GGTTCTTTAGCAGCATTTTT-ATAAAAACGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGA-AGAAGCGCCGCTAATGCTC
* * *
9389265 GAGCCTTTAGCTGCGTTTTTGAAGAAGCGTCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * * *
9389306 GGGCCTTTAGCGGCGTTTTTAAAGAATCGCCGCTAATGTTG
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* *
9389347 GGGCCTTTAGCGGCATTTTTGAAGAAACGCCGC
1 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
9389380 AAAAACATTT
Statistics
Matches: 167, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
40 3 0.02
41 161 0.96
42 3 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
Found at i:9389363 original size:123 final size:123
Alignment explanation
Indices: 9389144--9389379 Score: 341
Period size: 123 Copynumber: 1.9 Consensus size: 123
9389134 AGTTTTTAGG
*
9389144 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTGAAAAT
1 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTAAAAAT
* **
9389209 GCGCTGCTAATGCTCGGTTCTTTAGCAGCATTTTT-ATAAAAACGCCGCTAATGCTCGA
66 GCGCCGCTAATGCTCGGGCCTTTAGCAGCATTTTTGA-AAAAACGCCGCTAATGCTCGA
* * *
9389267 GCCTTTAGCTGCGTTTTTGAAGAAGCGTCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTAAAGAA
1 GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTAAA-AA
* * * *
9389332 T-CGCCGCTAATGTTGGGGCCTTTAGCGGCATTTTTGAAGAAACGCCGC
65 TGCGCCGCTAATGCTCGGGCCTTTAGCAGCATTTTTGAAAAAACGCCGC
9389380 AAAAACATTT
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
123 96 0.96
124 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.31
Consensus pattern (123 bp):
GCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTTAAAAAT
GCGCCGCTAATGCTCGGGCCTTTAGCAGCATTTTTGAAAAAACGCCGCTAATGCTCGA
Found at i:9390288 original size:43 final size:43
Alignment explanation
Indices: 9390200--9390448 Score: 223
Period size: 43 Copynumber: 5.8 Consensus size: 43
9390190 TTAAAAAAAA
* * * *
9390200 CGCCACTAAAGGTCATGGTCTTTTTGCGGCGTTTGTGCGAAAAG
1 CGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTTGTCCGGAAAG
* * * ** *
9390244 CGCAGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTTTGGCAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCCGGAAAG
*
9390287 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGGGAAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCCGGAAAG
* * * *
9390330 TGCCGCTAAAGGTCATGCTCTTTAGCGACGTTTGT-GGGAAAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCCGG-AAAG
** ** * * *
9390373 CGCCGCTAAAGACCATGACCTTTAGCGGTGTTTAT-GGTGAAAG
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCCG-GAAAG
* * * *
9390416 CGCTGCTATAGGTCTTGGTCTTTAGCAGCGTTT
1 CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
9390449 TTAGAAAAAA
Statistics
Matches: 168, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
42 3 0.02
43 148 0.88
44 17 0.10
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (43 bp):
CGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCCGGAAAG
Found at i:9390354 original size:86 final size:85
Alignment explanation
Indices: 9390195--9390448 Score: 258
Period size: 86 Copynumber: 2.9 Consensus size: 85
9390185 CGTTTTTAAA
* * * * * *
9390195 AAAAACGCCACTAAAGGTCATGGTCTTTTTGCGGCGTTTGTGCGAAAAGCGCAGCTAAAGATCAG
1 AAAAGCGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTTGTG-GGAAAGCGCAGCTAAAGGTCAT
*
9390260 GGTCTTTAGCGGCGTTTGTTTGG
64 GGTCTTTAGCGGCGTTTG-TGGG
* * *
9390283 -CAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGGGAAAGTGCCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGT-GGGAAAGCGCAGCTAAAGGTCATG
* *
9390347 CTCTTTAGCGACGTTTGTGGG
65 GTCTTTAGCGGCGTTTGTGGG
** ** * * * * *
9390368 AAAAGCGCCGCTAAAGACCATGACCTTTAGCGGTGTTTATGGTGAAAGCGCTGCTATAGGTCTTG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGG-GAAAGCGCAGCTAAAGGTCATG
*
9390433 GTCTTTAGCAGCGTTT
65 GTCTTTAGCGGCGTTT
9390449 TTAGAAAAAA
Statistics
Matches: 137, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
85 5 0.04
86 110 0.80
87 22 0.16
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (85 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAGCGCAGCTAAAGGTCATGG
TCTTTAGCGGCGTTTGTGGG
Found at i:9390417 original size:129 final size:130
Alignment explanation
Indices: 9390205--9390448 Score: 312
Period size: 129 Copynumber: 1.9 Consensus size: 130
9390195 AAAAACGCCA
* * * * **
9390205 CTAAAGGTCATGGTCTTTTTGCGGCGTTTGTGCGAAAAGCGCAGCTAAAGATCAGGGTCTTTAGC
1 CTAAAGGTCATGCTCTTTTAGCGACGTTTGTGCGAAAAGCGCAGCTAAAGACCAGGACCTTTAGC
* * * *
9390270 GGCGTTTGTTTGGCAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTCGGGAAAGTGCCG
66 GGCGTTTATGTGGAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTCGGGAAAGTGCCG
* * *
9390335 CTAAAGGTCATGCTC-TTTAGCGACGTTTGTGGGAAAAGCGCCGCTAAAGACCATGACCTTTAGC
1 CTAAAGGTCATGCTCTTTTAGCGACGTTTGTGCGAAAAGCGCAGCTAAAGACCAGGACCTTTAGC
* * * *
9390399 GGTGTTTATG-GTGAAAGCGCTGCTATAGGTCTTGGTCTTTAGCAGCGTTT
66 GGCGTTTATGTG-GAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTT
9390449 TTAGAAAAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
128 1 0.01
129 81 0.84
130 14 0.15
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (130 bp):
CTAAAGGTCATGCTCTTTTAGCGACGTTTGTGCGAAAAGCGCAGCTAAAGACCAGGACCTTTAGC
GGCGTTTATGTGGAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTCGGGAAAGTGCCG
Found at i:9392521 original size:98 final size:98
Alignment explanation
Indices: 9392352--9392546 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
9392342 ATAATGAAAA
* *
9392352 ACTTTAAAGGAACATCCACTTATCCAAGATTTAAGAAAACACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAAACACACCCAATACGTTAGGGCACAATT
* *
9392417 CCTTTAGAATCTCAAACTCGGAATATTTCCTTC
66 CCTTTAGAATCCCAAACTCGGAAAATTTCCTTC
* *
9392450 ACTTTAAAAGAACATCCGCTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAAACACACCCAATACGTTAGGGCACAATT
9392515 CCTTTAGAATCCCAAACTCGGAAAATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAAAATTTCCTT
9392547 TATGATTTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAAACACACCCAATACGTTAGGGCACAATT
CCTTTAGAATCCCAAACTCGGAAAATTTCCTTC
Done.