Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 38 of 213
Found at i:9968094 original size:8 final size:8
Alignment explanation
Indices: 9968083--9968107 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9968073 CCAAATATCC
9968083 TTTTAAAA
1 TTTTAAAA
9968091 TTTTAAAA
1 TTTTAAAA
9968099 TTTTAAAA
1 TTTTAAAA
9968107 T
1 T
9968108 AAGGCAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:9968194 original size:115 final size:107
Alignment explanation
Indices: 9968091--9968282 Score: 323
Period size: 107 Copynumber: 1.8 Consensus size: 107
9968081 CCTTTTAAAA
* * * *
9968091 TTTTAAAATTTTAAAATAAGGCAATGTTTTGCATTTGAAAATTCGAAAAAACGTGCTCTAATGTG
1 TTTTAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTG
9968156 CTGGGTTTCGATTTTCTCGTTCAACCAAATAGCCAAATATCC
66 CTGGGTTTCGATTTTCTCGTTCAACCAAATAGCCAAATATCC
*
9968198 TTTTAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGCCCTAATGTG
1 TTTTAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTG
*
9968263 CTGGGTTTC-AATTTCTCGTT
66 CTGGGTTTCGATTTTCTCGTT
9968283 GGACCGAATG
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
106 10 0.13
107 69 0.87
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (107 bp):
TTTTAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTG
CTGGGTTTCGATTTTCTCGTTCAACCAAATAGCCAAATATCC
Found at i:9969582 original size:24 final size:24
Alignment explanation
Indices: 9969553--9969609 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
9969543 ATTAGGAGGA
* * *
9969553 GGAGGTGGTGGAGGGTTTGGTGGT
1 GGAGGTGGAGGAGGGCTAGGTGGT
9969577 GGAGGTGGAGGAGGGCTAGGTGGT
1 GGAGGTGGAGGAGGGCTAGGTGGT
*
9969601 GGAGCTGGA
1 GGAGGTGGA
9969610 TTTGGTGGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.14, C:0.04, G:0.61, T:0.21
Consensus pattern (24 bp):
GGAGGTGGAGGAGGGCTAGGTGGT
Found at i:9969633 original size:18 final size:18
Alignment explanation
Indices: 9969612--9969646 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9969602 GAGCTGGATT
9969612 TGGTGGGGGCGCTGGTGC
1 TGGTGGGGGCGCTGGTGC
* *
9969630 TGGTGGTGGCGTTGGTG
1 TGGTGGGGGCGCTGGTG
9969647 GAGGTGGTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.11, G:0.60, T:0.29
Consensus pattern (18 bp):
TGGTGGGGGCGCTGGTGC
Found at i:9969652 original size:18 final size:18
Alignment explanation
Indices: 9969631--9969674 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
9969621 CGCTGGTGCT
*
9969631 GGTGGT-GGCGTTGGTGGA
1 GGTGGTGGGC-TTGGAGGA
9969649 GGTGGTGGGCTTGGAGGA
1 GGTGGTGGGCTTGGAGGA
9969667 GGTGGTGG
1 GGTGGTGG
9969675 TGGAGGGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.07, C:0.05, G:0.64, T:0.25
Consensus pattern (18 bp):
GGTGGTGGGCTTGGAGGA
Found at i:9969652 original size:24 final size:23
Alignment explanation
Indices: 9969625--9969739 Score: 73
Period size: 24 Copynumber: 5.2 Consensus size: 23
9969615 TGGGGGCGCT
9969625 GGTGCTGGTGGTGGCGTTGGTGGA
1 GGTGCTGGTGGTGG-GTTGGTGGA
* *
9969649 -G-G-TGGT-G-GGCTTGGAGGA
1 GGTGCTGGTGGTGGGTTGGTGGA
* * *
9969667 GGTGGTGGTGGAGGGTTCGGAGGA
1 GGTGCTGGTGGTGGGTT-GGTGGA
* * * *
9969691 GGTGGTGGCGGTGGAGTAGGTGGT
1 GGTGCTGGTGGTGG-GTTGGTGGA
9969715 GGTGCTGGTGGTGGGTT--TGGA
1 GGTGCTGGTGGTGGGTTGGTGGA
9969736 GGTG
1 GGTG
9969740 GAGCTGGAGG
Statistics
Matches: 72, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
18 7 0.10
19 3 0.04
20 2 0.03
21 15 0.21
22 2 0.03
23 7 0.10
24 34 0.47
25 2 0.03
ACGTcount: A:0.08, C:0.05, G:0.61, T:0.26
Consensus pattern (23 bp):
GGTGCTGGTGGTGGGTTGGTGGA
Found at i:9969706 original size:18 final size:18
Alignment explanation
Indices: 9969631--9969716 Score: 64
Period size: 21 Copynumber: 4.4 Consensus size: 18
9969621 CGCTGGTGCT
* *
9969631 GGTGGTGGCGTTGGTGGA
1 GGTGGTGGCGGTGGAGGA
* *
9969649 GGTGGTGGGCTTGGAGGAGGT
1 GGTGGT-GGC--GGTGGAGGA
*
9969670 GGTGGTGGAGGGTTCGGAGGA
1 GGTGGTGG-CGG-T-GGAGGA
*
9969691 GGTGGTGGCGGTGGAGTA
1 GGTGGTGGCGGTGGAGGA
9969709 GGTGGTGG
1 GGTGGTGG
9969717 TGCTGGTGGT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
18 19 0.36
19 6 0.11
20 4 0.08
21 24 0.45
ACGTcount: A:0.09, C:0.05, G:0.63, T:0.23
Consensus pattern (18 bp):
GGTGGTGGCGGTGGAGGA
Found at i:9969740 original size:24 final size:24
Alignment explanation
Indices: 9969649--9969752 Score: 84
Period size: 24 Copynumber: 4.3 Consensus size: 24
9969639 CGTTGGTGGA
* *
9969649 GGTGGTGGGCTTGGAGGAGGTGGT
1 GGTGGTGGGTTTGGAGGAGGTGCT
* * *
9969673 GGTGGAGGGTTCGGAGGAGGTGGT
1 GGTGGTGGGTTTGGAGGAGGTGCT
* * * *
9969697 GGCGGTGGAG-TAGGTGGTGGTGCT
1 GGTGGTGG-GTTTGGAGGAGGTGCT
* *
9969721 GGTGGTGGGTTTGGAGGTGGAGCT
1 GGTGGTGGGTTTGGAGGAGGTGCT
*
9969745 GGAGGTGG
1 GGTGGTGG
9969753 AGGTGGCTTC
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
23 1 0.02
24 62 0.97
25 1 0.02
ACGTcount: A:0.10, C:0.05, G:0.62, T:0.24
Consensus pattern (24 bp):
GGTGGTGGGTTTGGAGGAGGTGCT
Found at i:9969790 original size:18 final size:18
Alignment explanation
Indices: 9969748--9969790 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
9969738 TGGAGCTGGA
*
9969748 GGTGGAGGTGGCTTCGGT
1 GGTGGAGGTGGCTTCGGC
* * *
9969766 GGAGGAGGTGGGTTTGGC
1 GGTGGAGGTGGCTTCGGC
9969784 GGTGGAG
1 GGTGGAG
9969791 CTGGTGCAGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.09, C:0.07, G:0.60, T:0.23
Consensus pattern (18 bp):
GGTGGAGGTGGCTTCGGC
Found at i:9970574 original size:19 final size:19
Alignment explanation
Indices: 9970550--9970587 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
9970540 TCAAATTTTG
*
9970550 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
9970569 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
9970588 TAAACTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:9970634 original size:18 final size:18
Alignment explanation
Indices: 9970598--9970634 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9970588 TAAACTTTAT
*
9970598 ATTTTTAAAAAATTATAA
1 ATTTTTAAAAAAATATAA
*
9970616 ATTTTTAAAAAAATCTAA
1 ATTTTTAAAAAAATATAA
9970634 A
1 A
9970635 AAATATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTTTAAAAAAATATAA
Found at i:9970646 original size:19 final size:19
Alignment explanation
Indices: 9970624--9970663 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
9970614 AAATTTTTAA
9970624 AAAAATCTAA-AAAATATAT
1 AAAAATCTAATAAAATA-AT
*
9970643 AAAAATTTAATAAAATAAT
1 AAAAATCTAATAAAATAAT
9970662 AA
1 AA
9970664 TTTTGGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATCTAATAAAATAAT
Found at i:9970651 original size:29 final size:28
Alignment explanation
Indices: 9970603--9970658 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
9970593 TTTATATTTT
**
9970603 TAAAAAATTATAAATTTTTAAAAAAATC
1 TAAAAAATTATAAAAATTTAAAAAAATC
*
9970631 TAAAAAATATATAAAAATTTAATAAAAT
1 TAAAAAAT-TATAAAAATTTAAAAAAAT
9970659 AATAATTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (28 bp):
TAAAAAATTATAAAAATTTAAAAAAATC
Found at i:9974618 original size:18 final size:18
Alignment explanation
Indices: 9974581--9974618 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9974571 AAAAAATTAC
*
9974581 ATTTTTTAGATTTAATAT
1 ATTTTTTAGATTTAAAAT
9974599 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTAGATTT-AAAAT
9974617 AT
1 AT
9974619 ATAGAGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTTAGATTTAAAAT
Found at i:9975209 original size:33 final size:34
Alignment explanation
Indices: 9975156--9975234 Score: 117
Period size: 36 Copynumber: 2.3 Consensus size: 34
9975146 TTGAAGTAAT
*
9975156 TATTTAAAATATTTTACATAT-AAA-AATAATGA
1 TATTTGAAATATTTTACATATAAAATAATAATGA
9975188 TATTTGAAATATTTTTACATATAAAAATAATAATGA
1 TATTTGAAATA-TTTTACATAT-AAAATAATAATGA
9975224 TATTTGAAATA
1 TATTTGAAATA
9975235 ATTATTTGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
32 10 0.24
33 10 0.24
35 3 0.07
36 19 0.45
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.42
Consensus pattern (34 bp):
TATTTGAAATATTTTACATATAAAATAATAATGA
Found at i:9975344 original size:17 final size:18
Alignment explanation
Indices: 9975311--9975350 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
9975301 CACATATAAA
9975311 AATTATATTTACTAAAAAT
1 AATTATATTTAC-AAAAAT
9975330 AATTATATTTA-AAAAAT
1 AATTATATTTACAAAAAT
9975347 AATT
1 AATT
9975351 GATTATACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
19 11 0.52
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTATATTTACAAAAAT
Found at i:9975461 original size:29 final size:29
Alignment explanation
Indices: 9975403--9975467 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
9975393 AATATAATGA
* * * *
9975403 TATTTGAAATAATTATTTGATTTTATAGT
1 TATTTGAAAAAATAATTTGATTTCAAAGT
9975432 TATTTGAAAAAATAATTCTG-TTTCAAAGT
1 TATTTGAAAAAATAATT-TGATTTCAAAGT
9975461 T-TTTGAA
1 TATTTGAA
9975468 GCTTTTACAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 6 0.19
29 23 0.74
30 2 0.06
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (29 bp):
TATTTGAAAAAATAATTTGATTTCAAAGT
Found at i:9978247 original size:31 final size:31
Alignment explanation
Indices: 9978209--9978269 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
9978199 GGCCCATTTT
*
9978209 TATTTTAAAAAT-TTTTAAAAATTTAAAAAAG
1 TATTTTAAAAATATTTT-AAAATTAAAAAAAG
9978240 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAA
9978270 TTAAAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 24 0.86
32 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (31 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAG
Found at i:9978254 original size:11 final size:11
Alignment explanation
Indices: 9978209--9978260 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
9978199 GGCCCATTTT
9978209 TATTTTAAAAA
1 TATTTTAAAAA
9978220 T-TTTT-AAAA
1 TATTTTAAAAA
*
9978229 -ATTTAAAAAA
1 TATTTTAAAAA
9978239 GTATTTTAAAAA
1 -TATTTTAAAAA
9978251 TATTTTAAAA
1 TATTTTAAAA
9978261 TTAAAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 7 0.20
10 8 0.23
11 11 0.31
12 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:9978278 original size:40 final size:40
Alignment explanation
Indices: 9978225--9978310 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
9978215 AAAAATTTTT
* * *
9978225 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAA
9978265 AAAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAA
9978305 AAAAAT
1 AAAAAT
9978311 AAATATATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (40 bp):
AAAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAA
Found at i:9987861 original size:42 final size:42
Alignment explanation
Indices: 9987802--9987967 Score: 203
Period size: 42 Copynumber: 4.0 Consensus size: 42
9987792 ACTGAGATGT
* *
9987802 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATGT
1 GATT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
* * *
9987845 GATTCATGTAAAACCATGTCTGGGATATTGGCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
** * *
9987887 GATTCGTGTAAGACCATGTCTAAGACTTTGCCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
9987929 GATTCGTGTAAGACCATAG-CT-GG-CTATTGGCATCGATAT
1 GATTCGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATAT
9987968 ATGATAGCAT
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 13 0.12
42 87 0.82
43 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
Found at i:9987981 original size:84 final size:84
Alignment explanation
Indices: 9987809--9987986 Score: 209
Period size: 84 Copynumber: 2.1 Consensus size: 84
9987799 TGTGATTACG
** * * *
9987809 TGTAAGACCATGTCTGGGACATTGGCATCGTTATGTGATTCATGTAAAACCATGTCTGGGATATT
1 TGTAAGACCATGTCTAAGACATTGCCATCGATATGAGATTCATGTAAAACCATGTCTGGGATATT
* *
9987874 GGCATCGATATGAGATTCG
66 GGCATCGATATGAGATGCA
* * * *
9987893 TGTAAGACCATGTCTAAGACTTTGCCATCGATATGAGATTCGTGTAAGACCATAG-CT-GGCTAT
1 TGTAAGACCATGTCTAAGACATTGCCATCGATATGAGATTCATGTAAAACCAT-GTCTGGGATAT
9987956 TGGCATCGATAT-ATGATAGCA
65 TGGCATCGATATGA-GAT-GCA
9987977 TGTAAGACCA
1 TGTAAGACCA
9987987 AATCTGGAAT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
82 1 0.01
83 20 0.25
84 58 0.73
85 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATGTCTAAGACATTGCCATCGATATGAGATTCATGTAAAACCATGTCTGGGATATT
GGCATCGATATGAGATGCA
Found at i:9994531 original size:16 final size:16
Alignment explanation
Indices: 9994510--9994546 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
9994500 GTGGAGGAAA
9994510 GAAAATTGAAAAGATG
1 GAAAATTGAAAAGATG
* *
9994526 GAAAATTGGAATGATG
1 GAAAATTGAAAAGATG
9994542 GAAAA
1 GAAAA
9994547 CTAGAAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.27, T:0.19
Consensus pattern (16 bp):
GAAAATTGAAAAGATG
Found at i:10008913 original size:89 final size:89
Alignment explanation
Indices: 10008762--10008937 Score: 325
Period size: 89 Copynumber: 2.0 Consensus size: 89
10008752 CCGAACTTCA
10008762 AATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTTTT
1 AATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTTTT
*
10008827 TTCAGGCAATTTCAGTTTTCTACG
66 TTCAAGCAATTTCAGTTTTCTACG
* *
10008851 AATGTTACACGGTCAACTCCAAACTATTATCGATCAAACTAGATATTCACTCAATAACCCTTTTT
1 AATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTTTT
10008916 TTCAAGCAATTTCAGTTTTCTA
66 TTCAAGCAATTTCAGTTTTCTA
10008938 AGATTCTAAA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.35
Consensus pattern (89 bp):
AATGTTACACGGTCAACTCCAAACTACTATCAATCAAACTAGATATTCACTCAATAACCCTTTTT
TTCAAGCAATTTCAGTTTTCTACG
Found at i:10014708 original size:18 final size:19
Alignment explanation
Indices: 10014668--10014709 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
10014658 TCTTATTGAC
10014668 ATAAAATAACTAAATAACT
1 ATAAAATAACTAAATAACT
* *
10014687 -TAAAAT-ACTTAATAATT
1 ATAAAATAACTAAATAACT
10014704 ATAAAA
1 ATAAAA
10014710 AAATTAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAAAATAACTAAATAACT
Found at i:10018454 original size:21 final size:22
Alignment explanation
Indices: 10018425--10018468 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
10018415 TTTCTAATTG
*
10018425 TTTTCAAACT-ATTTTTAAGGTC
1 TTTTCAAACTCA-ATTTAAGGTC
10018447 TTTT-AAACTCAATTTAAGGTC
1 TTTTCAAACTCAATTTAAGGTC
10018468 T
1 T
10018469 ATAAGTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.48
Consensus pattern (22 bp):
TTTTCAAACTCAATTTAAGGTC
Found at i:10018796 original size:17 final size:17
Alignment explanation
Indices: 10018776--10018809 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10018766 AATCAATAAA
*
10018776 CCTTTTCAAATAATACC
1 CCTTTCCAAATAATACC
10018793 CCTTTCCAAATAATACC
1 CCTTTCCAAATAATACC
10018810 TAAAAAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (17 bp):
CCTTTCCAAATAATACC
Found at i:10023298 original size:9 final size:9
Alignment explanation
Indices: 10023284--10023310 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
10023274 TTAAATGTTG
10023284 ATACTATTA
1 ATACTATTA
10023293 ATACTATTA
1 ATACTATTA
10023302 ATACTATTA
1 ATACTATTA
10023311 GTATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
ATACTATTA
Found at i:10023635 original size:48 final size:48
Alignment explanation
Indices: 10023581--10023677 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
10023571 AAACCGAGGC
10023581 AATATTCGTTATTTTCAGGATTCGAGGAATCATGCTCCTAACTTACGG
1 AATATTCGTTATTTTCAGGATTCGAGGAATCATGCTCCTAACTTACGG
*
10023629 AATATTCGTTATTTTCAGGATTCGAGGAGTCATGCTCCTAACTTACGG
1 AATATTCGTTATTTTCAGGATTCGAGGAATCATGCTCCTAACTTACGG
10023677 A
1 A
10023678 GTATGGACTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (48 bp):
AATATTCGTTATTTTCAGGATTCGAGGAATCATGCTCCTAACTTACGG
Found at i:10026209 original size:34 final size:34
Alignment explanation
Indices: 10026171--10026238 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
10026161 AATCAAGAAA
10026171 GTATTCGGCCGATAGAAGAACACTTGCAAATGAT
1 GTATTCGGCCGATAGAAGAACACTTGCAAATGAT
10026205 GTATTCGGCCGATAGAAGAACACTTGCAAATGAT
1 GTATTCGGCCGATAGAAGAACACTTGCAAATGAT
10026239 CCTATCTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (34 bp):
GTATTCGGCCGATAGAAGAACACTTGCAAATGAT
Found at i:10029043 original size:37 final size:37
Alignment explanation
Indices: 10028999--10029127 Score: 240
Period size: 37 Copynumber: 3.5 Consensus size: 37
10028989 CACTTGTCCC
*
10028999 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
10029036 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
*
10029073 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
10029110 TGATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
10029128 TAAAGCTATC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 90 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (37 bp):
TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
Found at i:10029144 original size:46 final size:46
Alignment explanation
Indices: 10029091--10029359 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
10029081 TAAGTGTAGC
* *
10029091 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
10029137 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
10029183 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
10029235 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
10029281 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
10029333 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10029360 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 111 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 84 0.42
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:10029210 original size:52 final size:52
Alignment explanation
Indices: 10029134--10029353 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
10029124 TAGCTAAAGC
* * *
10029134 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACT
* *
10029187 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACT
*
10029239 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACT
* * * *
10029285 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACT
10029337 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
10029354 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 42 0.28
49 1 0.01
52 87 0.59
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACT
Found at i:10029256 original size:98 final size:98
Alignment explanation
Indices: 10029091--10029359 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
10029081 TAAGTGTAGC
* * *
10029091 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
*
10029156 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCAAAGCTATCACTTAT
**
10029190 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
10029255 GATCAGATAAGTATAGCCAAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCAAAGCTATCACTTAT
* *
10029288 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
10029353 GATCAGA
66 GATCAGA
10029360 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 150 0.94
99 9 0.06
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCAAAGCTATCACTTAT
Found at i:10038783 original size:23 final size:23
Alignment explanation
Indices: 10038748--10039007 Score: 243
Period size: 23 Copynumber: 11.1 Consensus size: 23
10038738 ACACTAAAAT
*
10038748 TTGGACAGCATATATACAAC-AA
1 TTGGGCAGCATATATACAACAAA
10038770 TCTGGGCAGCATATATACAACAAA
1 T-TGGGCAGCATATATACAACAAA
* * * *
10038794 TTGAGCAGCATTTTTACACCAAAAA
1 TTGGGCAGCATATATACA--ACAAA
*
10038819 TTGGACAGCATATATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* *
10038842 TTGGGCAGCATATATATACCAAA
1 TTGGGCAGCATATATACAACAAA
* * * * *
10038865 TTGAGTAGCATTTTTACATCAAAA
1 TTGGGCAGCATATATACAAC-AAA
** *
10038889 TTGGATAGCATATATACAACAAT
1 TTGGGCAGCATATATACAACAAA
*
10038912 TTGGGCAGCATAAATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
10038935 TTGAGCAGCATTTTTACACCAAAAA
1 TTGGGCAGCATATATACA--ACAAA
*
10038960 TTGGACAGCATATATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* *
10038983 TTGGGCAGCATATATATACCAAA
1 TTGGGCAGCATATATACAACAAA
10039006 TT
1 TT
10039008 CAAACCAAAA
Statistics
Matches: 189, Mismatches: 42, Indels: 13
0.77 0.17 0.05
Matches are distributed among these distances:
22 1 0.01
23 131 0.69
24 21 0.11
25 36 0.19
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (23 bp):
TTGGGCAGCATATATACAACAAA
Found at i:10038803 original size:71 final size:70
Alignment explanation
Indices: 10038689--10039007 Score: 435
Period size: 71 Copynumber: 4.5 Consensus size: 70
10038679 GGACAGCTCT
* * * * * * *
10038689 TATACATCAATTTGGACAGCATTTATATACCAAACT-AGACAGCATTTTCACACTAAAATTTGGA
1 TATACAACAA-TTGGGCAGCATATATATACCAAATTGAG-CAGCATTTTTACACCAAAAATTGGA
10038753 CAGCATA
64 CAGCATA
* *
10038760 TATACAACAATCTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGAC
1 TATACAACAAT-TGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACACCAAAAATTGGAC
10038825 AGCATA
65 AGCATA
* * *
10038831 TATACAACAAATTGGGCAGCATATATATACCAAATTGAGTAGCATTTTTACATC-AAAATTGGAT
1 TATACAAC-AATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACACCAAAAATTGGAC
10038895 AGCATA
65 AGCATA
* * *
10038901 TATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGAC
1 TATACAACAA-TTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACACCAAAAATTGGAC
10038966 AGCATA
65 AGCATA
10038972 TATACAACAAATTGGGCAGCATATATATACCAAATT
1 TATACAAC-AATTGGGCAGCATATATATACCAAATT
10039008 CAAACCAAAA
Statistics
Matches: 219, Mismatches: 23, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
69 2 0.01
70 62 0.28
71 148 0.68
72 7 0.03
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (70 bp):
TATACAACAATTGGGCAGCATATATATACCAAATTGAGCAGCATTTTTACACCAAAAATTGGACA
GCATA
Found at i:10038937 original size:141 final size:142
Alignment explanation
Indices: 10038689--10039007 Score: 509
Period size: 141 Copynumber: 2.3 Consensus size: 142
10038679 GGACAGCTCT
* * * * *
10038689 TATACATCAATTTGGACAGCATTTATATACCAAACTAGACAGCATTTTCACACTAAAATTTGGAC
1 TATACAACAAATTGGGCAGCATATATATACCAAATTAGACAGCATTTTCACACTAAAATTTGGAC
*
10038754 AGCATATATACAACAATCTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAA
66 AGCATATATACAACAATCTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAA
10038819 TTGGACAGCATA
131 TTGGACAGCATA
* *
10038831 TATACAACAAATTGGGCAGCATATATATACCAAATT-GAGTAGCATTTTTACA-TCAAAA-TTGG
1 TATACAACAAATTGGGCAGCATATATATACCAAATTAGA-CAGCATTTTCACACT-AAAATTTGG
* *
10038893 ATAGCATATATACAACAATTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAA
64 ACAGCATATATACAACAATCTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAA
10038958 AATTGGACAGCATA
129 AATTGGACAGCATA
10038972 TATACAACAAATTGGGCAGCATATATATACCAAATT
1 TATACAACAAATTGGGCAGCATATATATACCAAATT
10039008 CAAACCAAAA
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
141 119 0.72
142 46 0.28
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (142 bp):
TATACAACAAATTGGGCAGCATATATATACCAAATTAGACAGCATTTTCACACTAAAATTTGGAC
AGCATATATACAACAATCTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAA
TTGGACAGCATA
Found at i:10039693 original size:28 final size:28
Alignment explanation
Indices: 10039661--10039732 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
10039651 TTTAATAAGT
* * *
10039661 TCGCATACTTAGTGCTTAATAATCAATC
1 TCGCACACTTAGTGCTTAACAATCAAAC
* *
10039689 TCGCACACTTAGTGCTTTACAATTAAAC
1 TCGCACACTTAGTGCTTAACAATCAAAC
10039717 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
10039733 AATCTCATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTAACAATCAAAC
Found at i:10041102 original size:138 final size:138
Alignment explanation
Indices: 10040765--10041135 Score: 356
Period size: 138 Copynumber: 2.7 Consensus size: 138
10040755 GGCTATTACA
* * * ** * *
10040765 GCAGTAGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTTGCAGTGAATCAGATTGAAGCT
1 GCAGTGGAGCAAGGTGAAGCTACGAATCCTATATCATTAAAGTTGCAGAGGATCAGATTGAAGCT
* ** * * * *
10040830 ACAATTTCTATAGCCCTGAAGTTACAATGGGTTGGAATGAAACTATGACAGCGGATCTTATCTCC
66 ACAATTTCTATACCCCTGAAGTTGTAGTGGGTTGGAATGAAACTACGACAGCGAATCTTACCTCC
10040895 CTGAAGTT
131 CTGAAGTT
* ** * * * *
10040903 GCAATGG-G-TTGGAATGAAGCTAAGAATCTTATATCATTGAAGTTGTAGTA-GATCAGATTGAA
1 GCAGTGGAGCAAGG--TGAAGCTACGAATCCTATATCATTAAAGTTGCAG-AGGATCAGATTGAA
* * ** *
10040965 GCCACAATTTCTATACCCCTAAAGTTGTAGTGGGTTGGAATGAAACTACGATGGTGAATCTTACC
63 GCTACAATTTCTATACCCCTGAAGTTGTAGTGGGTTGGAATGAAACTACGACAGCGAATCTTACC
10041030 TCCCT-AGAGTT
128 TCCCTGA-AGTT
* * * * *
10041041 GCAGTGGAGCAAGGTGAAGCTACGAATCCTAAATCTTTAAAGTGGCAGAGGATCGGGTTGAAGCT
1 GCAGTGGAGCAAGGTGAAGCTACGAATCCTATATCATTAAAGTTGCAGAGGATCAGATTGAAGCT
* * *
10041106 ATAA-ATCTTATATCCCTGAAGTTGTAGTGG
66 ACAATTTC-TATACCCCTGAAGTTGTAGTGG
10041136 ATCAGATTAA
Statistics
Matches: 182, Mismatches: 43, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
136 1 0.01
137 5 0.03
138 173 0.95
139 1 0.01
140 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (138 bp):
GCAGTGGAGCAAGGTGAAGCTACGAATCCTATATCATTAAAGTTGCAGAGGATCAGATTGAAGCT
ACAATTTCTATACCCCTGAAGTTGTAGTGGGTTGGAATGAAACTACGACAGCGAATCTTACCTCC
CTGAAGTT
Found at i:10042604 original size:25 final size:25
Alignment explanation
Indices: 10042570--10042621 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
10042560 TTCTTTTTTA
*
10042570 TTGGTTTTAATTTTTACCTCATAAT
1 TTGGTTTTAATTTTTACCCCATAAT
10042595 TTGGTTTTAATTTTTACCCCATAAT
1 TTGGTTTTAATTTTTACCCCATAAT
10042620 TT
1 TT
10042622 TAATTTATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.23, C:0.13, G:0.08, T:0.56
Consensus pattern (25 bp):
TTGGTTTTAATTTTTACCCCATAAT
Found at i:10042628 original size:25 final size:25
Alignment explanation
Indices: 10042575--10042628 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
10042565 TTTTATTGGT
* **
10042575 TTTAATTTTTACCTCATAATTTGGT
1 TTTAATTTTTACCCCATAATTTGAA
*
10042600 TTTAATTTTTACCCCATAATTTTAA
1 TTTAATTTTTACCCCATAATTTGAA
10042625 TTTA
1 TTTA
10042629 TCTACAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTAATTTTTACCCCATAATTTGAA
Found at i:10042953 original size:3 final size:3
Alignment explanation
Indices: 10042947--10042985 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
10042937 TTTCATTAGA
10042947 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10042986 GTTATAGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10043069 original size:9 final size:9
Alignment explanation
Indices: 10043055--10043081 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
10043045 TTAAATGTTG
10043055 ATACTATTA
1 ATACTATTA
10043064 ATACTATTA
1 ATACTATTA
10043073 ATACTATTA
1 ATACTATTA
10043082 GTATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
ATACTATTA
Found at i:10058005 original size:20 final size:19
Alignment explanation
Indices: 10057956--10058046 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 19
10057946 TTAATATAAA
*
10057956 TAAATATTATTAAAATATTTT
1 TAAATATT-TT-AAATATATT
** *
10057977 TGTATATTTTTAATAGTATT
1 TAAATATTTTAAATA-TATT
10057997 TAAATATTTTAAATATATT
1 TAAATATTTTAAATATATT
*
10058016 T---TATTTTATAATTTCATT
1 TAAATATTTTA-AATAT-ATT
10058034 TAAATA-TTTAAAT
1 TAAATATTTTAAAT
10058047 CAATTAACTA
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
16 7 0.12
17 4 0.07
18 4 0.07
19 12 0.21
20 21 0.38
21 8 0.14
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (19 bp):
TAAATATTTTAAATATATT
Found at i:10058344 original size:5 final size:5
Alignment explanation
Indices: 10058334--10058359 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10058324 TGAGCATTCG
10058334 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
10058360 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:10058589 original size:16 final size:16
Alignment explanation
Indices: 10058568--10058603 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
10058558 TTTTTTTTAT
10058568 TAATTTCATCACTTCA
1 TAATTTCATCACTTCA
*
10058584 TAATTTCATCACTTCG
1 TAATTTCATCACTTCA
10058600 TAAT
1 TAAT
10058604 AAAAGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (16 bp):
TAATTTCATCACTTCA
Found at i:10058884 original size:9 final size:9
Alignment explanation
Indices: 10058867--10058901 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10058857 TAGTTTGATG
10058867 TTCGAATTA
1 TTCGAATTA
*
10058876 TTTGAATTA
1 TTCGAATTA
*
10058885 TTCGAGTTA
1 TTCGAATTA
10058894 TTCGAATT
1 TTCGAATT
10058902 CGAAAACTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (9 bp):
TTCGAATTA
Found at i:10060417 original size:42 final size:42
Alignment explanation
Indices: 10060295--10060458 Score: 123
Period size: 42 Copynumber: 3.9 Consensus size: 42
10060285 CTGTCAATGC
* * * * * *
10060295 CACACGGCCAGGGACAT-GAGCATGTGCCCAAGCCGTGTGAGC
1 CACACGGGCAAGGACATAG-GCGTGTGCCTAGGCCGTGTGAGA
* * * ** * * * **
10060337 CACACGAGCAATGATATAGGCGCCTGCCCAAGCAGTGTGATC
1 CACACGGGCAAGGACATAGGCGTGTGCCTAGGCCGTGTGAGA
* * * *
10060379 CACACGGGCAAGGACATGGGTGTGTGCCTAGTCCGTGTGGGA
1 CACACGGGCAAGGACATAGGCGTGTGCCTAGGCCGTGTGAGA
*
10060421 CACACGGGTAAGGACATAGGCGTGTGCCTAGGCCGTGT
1 CACACGGGCAAGGACATAGGCGTGTGCCTAGGCCGTGT
10060459 AACTCACTGT
Statistics
Matches: 93, Mismatches: 28, Indels: 2
0.76 0.23 0.02
Matches are distributed among these distances:
42 92 0.99
43 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.34, T:0.16
Consensus pattern (42 bp):
CACACGGGCAAGGACATAGGCGTGTGCCTAGGCCGTGTGAGA
Found at i:10061960 original size:17 final size:16
Alignment explanation
Indices: 10061908--10061962 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
10061898 TGCCATTTGT
* *
10061908 TAAAAAAAATGAAATT
1 TAAAAAAAATCAAATC
10061924 TAAAGAAAAATGCAAA-C
1 TAAA-AAAAAT-CAAATC
10061941 TAAAAAAAATCAAAATC
1 TAAAAAAAATC-AAATC
10061958 TAAAA
1 TAAAA
10061963 CAGCTTGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 1 0.03
16 13 0.39
17 16 0.48
18 3 0.09
ACGTcount: A:0.69, C:0.07, G:0.05, T:0.18
Consensus pattern (16 bp):
TAAAAAAAATCAAATC
Found at i:10064576 original size:3 final size:3
Alignment explanation
Indices: 10064568--10064598 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10064558 TACTGATTTT
10064568 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10064599 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10064603 original size:3 final size:3
Alignment explanation
Indices: 10064597--10064621 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10064587 AATAATAATA
10064597 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
10064622 GTTAAGTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10067718 original size:98 final size:98
Alignment explanation
Indices: 10067546--10067740 Score: 347
Period size: 98 Copynumber: 2.0 Consensus size: 98
10067536 ACAATAAAAT
*
10067546 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
10067611 TCTAGAATCCCAAACTT-GGAATATTTCCTTTAC
66 TCTAAAATCCCAAA-TTCGGAATATTTCCTTTAC
10067644 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
10067709 TTTAAAATCCCAAATTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAATTCGGAATATTTCCTTTA
10067741 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
97 2 0.02
98 91 0.98
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAATTCGGAATATTTCCTTTAC
Found at i:10068423 original size:23 final size:25
Alignment explanation
Indices: 10068395--10068441 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
10068385 ATATAAATAT
10068395 GAAAATATTC-ATT-AAAAATATAG
1 GAAAATATTCGATTAAAAAATATAG
*
10068418 GAAAATATTCGTTTAAAAAATATA
1 GAAAATATTCGATTAAAAAATATA
10068442 TATATGTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 2 0.10
25 9 0.43
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (25 bp):
GAAAATATTCGATTAAAAAATATAG
Found at i:10069081 original size:23 final size:23
Alignment explanation
Indices: 10069055--10069115 Score: 122
Period size: 23 Copynumber: 2.7 Consensus size: 23
10069045 AATCATATCT
10069055 TCTAAGATTGCATATATATCATA
1 TCTAAGATTGCATATATATCATA
10069078 TCTAAGATTGCATATATATCATA
1 TCTAAGATTGCATATATATCATA
10069101 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
10069116 CCTCAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (23 bp):
TCTAAGATTGCATATATATCATA
Found at i:10090331 original size:29 final size:28
Alignment explanation
Indices: 10090255--10090331 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
10090245 ACAATTAGAT
10090255 CTAAATTTTTAAATA-AAAAATAAAAAGA
1 CTAAA-TTTTAAATATAAAAATAAAAAGA
* * * **
10090283 CTACATTCTTAAAAATAAAAGTACGAAGA
1 CTAAATT-TTAAATATAAAAATAAAAAGA
10090312 CTAAATTTTAAATATAAAAA
1 CTAAATTTTAAATATAAAAA
10090332 AATAATCACC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.05
28 21 0.54
29 16 0.41
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (28 bp):
CTAAATTTTAAATATAAAAATAAAAAGA
Found at i:10091220 original size:25 final size:24
Alignment explanation
Indices: 10091192--10091244 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
10091182 AAATAATATT
*
10091192 ATTTTAAGAAAATGTATTAGTAAAA
1 ATTTTAAGAAAATGGATTAG-AAAA
* *
10091217 ATTTTAAGGAAATGGATTAGAATA
1 ATTTTAAGAAAATGGATTAGAAAA
10091241 ATTT
1 ATTT
10091245 AATATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (24 bp):
ATTTTAAGAAAATGGATTAGAAAA
Found at i:10091929 original size:4 final size:4
Alignment explanation
Indices: 10091920--10091959 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
10091910 TTCAACTTGT
10091920 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
10091960 CAAACTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:10095515 original size:50 final size:50
Alignment explanation
Indices: 10095407--10095688 Score: 235
Period size: 50 Copynumber: 5.5 Consensus size: 50
10095397 AAAGAGATCT
* * * * *
10095407 CATGTAAGACCATGTCTGGGACATGACATTAGCATCCTTGAAATCATGAGAGGGCC
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GAGA-C--GAGAGGTCC
* * *
10095463 CATGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAGACGAGGGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACGAGAGGTCC
*
10095513 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACGAGAGGTCC
** * * * ** **
10095563 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATTAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACGAGAGGTCC
* * * * * * * * **
10095613 CATGTAAGACCATATCTGGGATATGACTTTGGTA--GTACATGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGACGAGAGGTCC
10095662 CATGTAAGACCATGTCTGGGACATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
10095689 TTTAGCATGT
Statistics
Matches: 189, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 32 0.17
50 121 0.64
52 1 0.01
53 3 0.02
55 2 0.01
56 29 0.15
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACGAGAGGTCC
Found at i:10102546 original size:31 final size:31
Alignment explanation
Indices: 10102511--10102584 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
10102501 AATTATTGGT
10102511 AAGTTTTCATTTTGGTCAATGAACTATTCAA
1 AAGTTTTCATTTTGGTCAATGAACTATTCAA
*
10102542 AAGTTTTCATTTTGGTCATTGAACTATTCAA
1 AAGTTTTCATTTTGGTCAATGAACTATTCAA
* *
10102573 AAATTTTTATTT
1 AAGTTTTCATTT
10102585 AAGTCATTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (31 bp):
AAGTTTTCATTTTGGTCAATGAACTATTCAA
Found at i:10102591 original size:31 final size:31
Alignment explanation
Indices: 10102514--10102593 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
10102504 TATTGGTAAG
** * *
10102514 TTTTCATTTTGGTCAATGAACTATTCAAAAG
1 TTTTCATTTAAGTCATTGAACTATTCAAAAA
**
10102545 TTTTCATTTTGGTCATTGAACTATTCAAAAA
1 TTTTCATTTAAGTCATTGAACTATTCAAAAA
*
10102576 TTTTTATTTAAGTCATTG
1 TTTTCATTTAAGTCATTG
10102594 GGCTGTTAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (31 bp):
TTTTCATTTAAGTCATTGAACTATTCAAAAA
Found at i:10107572 original size:16 final size:16
Alignment explanation
Indices: 10107551--10107588 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
10107541 CGTTTGGTTC
10107551 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
10107567 GGTGTATTGGATTAGA
1 GGTGTATTGGATTAGA
10107583 GGTGTA
1 GGTGTA
10107589 ATAGCAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (16 bp):
GGTGTATTGGATTAGA
Found at i:10107671 original size:16 final size:16
Alignment explanation
Indices: 10107650--10107682 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10107640 AAACTGTGTT
*
10107650 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
10107666 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
10107682 T
1 T
10107683 AGTAAATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:10114094 original size:41 final size:41
Alignment explanation
Indices: 10114036--10114568 Score: 631
Period size: 41 Copynumber: 13.0 Consensus size: 41
10114026 TTAGCGACGT
* * *
10114036 TAATGCTCAGGGCTTTAGCGACGTTTTTGAAGAAGCGTCAC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * *
10114077 TAATGCTCAGGGATTTAGCGGCGTTTTTGAAGATGCGTCGC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * * *
10114118 TAATGCTCAAGGCTTTAGCTGCGTTTTTAAAGAAGCGCCAC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
** *
10114159 TAATGCTTGGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCAC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
** * * *
10114200 TAATGCTCTTGTCTTTAGCGGCGTTTTTGAAAAAGCGCTGC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * *
10114241 TAATGCT-TGGGTCTTTAGTGGCGTTTTTGAAGAAGCGCTGC
1 TAATGCTCAGGG-CTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * *
10114282 TAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAAGCCCCGC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * * * **
10114323 TAATACTTAGGGCTTTAGCTGCGTTTTTAAAGAAGCGCAAC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
** * *
10114364 TAATGCTTGGGGCTTTAGCGACGTTTTTGAAGAAGCGCCAC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* **
10114405 TAATGCTC-GGGTTTTTAGCGGCGTTTTTGAAGAAGCGTTGC
1 TAATGCTCAGGG-CTTTAGCGGCGTTTTTGAAGAAGCGCCGC
10114446 TAATGCT-AGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
1 TAATGCTCAGGG-CTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* * * *
10114487 TAATGCTCAGGACTTTAGCGGCATTTTTGAAAAAGCCCCGC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
* *
10114528 TAATGCTCAGGGCTTTAGCGGCTTTTTTGAAAAAGCGCCGC
1 TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
10114569 AAAAAATTTT
Statistics
Matches: 424, Mismatches: 63, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
40 5 0.01
41 413 0.97
42 6 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (41 bp):
TAATGCTCAGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
Found at i:10115141 original size:81 final size:83
Alignment explanation
Indices: 10115055--10115229 Score: 250
Period size: 81 Copynumber: 2.1 Consensus size: 83
10115045 TCGGTGTCAT
10115055 GTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAACTTA-TATTAAATAAGGTTTA-TGGGT
1 GTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAACTTAGTATTAAATAAGGTTTAGT-GGT
10115118 TAGGGGTTAGGGATT-CGG
65 TAGGGGTTAGGGATTACGG
* *
10115136 GTTAGGAG-TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATGTATTAAATAAGGTTTAGTGG
1 GTTAGG-GTTTAGGGTTTAGATTAATTAGTGTGTTTTAACTTA-GTATTAAATAAGGTTTAGTGG
* *
10115200 TTTGGGGTTAGGGATTAGGG
64 TTAGGGGTTAGGGATTACGG
10115220 GTTAGAGGTT
1 GTTAG-GGTT
10115230 AAGAGTTAGT
Statistics
Matches: 83, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
81 38 0.46
82 1 0.01
83 33 0.40
84 9 0.11
85 2 0.02
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.43
Consensus pattern (83 bp):
GTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAACTTAGTATTAAATAAGGTTTAGTGGTT
AGGGGTTAGGGATTACGG
Found at i:10115355 original size:7 final size:7
Alignment explanation
Indices: 10115343--10115391 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
10115333 ATTGTAAAAG
10115343 AGGGGTT
1 AGGGGTT
10115350 AGGGGTT
1 AGGGGTT
* *
10115357 AGCGATT
1 AGGGGTT
*
10115364 AGAGGTT
1 AGGGGTT
10115371 AGGGGTT
1 AGGGGTT
10115378 AGGGGTT
1 AGGGGTT
*
10115385 AAGGGTT
1 AGGGGTT
10115392 TAGATTAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.20, C:0.02, G:0.49, T:0.29
Consensus pattern (7 bp):
AGGGGTT
Found at i:10115924 original size:18 final size:18
Alignment explanation
Indices: 10115901--10115935 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10115891 TTTCTACAAA
* *
10115901 TAATTTCTAATAAAAATT
1 TAATTTATAAAAAAAATT
10115919 TAATTTATAAAAAAAAT
1 TAATTTATAAAAAAAAT
10115936 AATAAATATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATTTATAAAAAAAATT
Found at i:10120441 original size:63 final size:63
Alignment explanation
Indices: 10120367--10120491 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
10120357 TATTATTTAC
10120367 GCTTCTTTTATTTGCTTTCTTTTATCATTTTCATAGAAAATTTAATTTAAATAATATTTTTGA
1 GCTTCTTTTATTTGCTTTCTTTTATCATTTTCATAGAAAATTTAATTTAAATAATATTTTTGA
*
10120430 GCTTCTTTTATTTGTTTTCTTTTATCATTTTCATAGAAAATTTAATTTAAATAATATTTTTG
1 GCTTCTTTTATTTGCTTTCTTTTATCATTTTCATAGAAAATTTAATTTAAATAATATTTTTG
10120492 TATCTATCCT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.28, C:0.09, G:0.06, T:0.57
Consensus pattern (63 bp):
GCTTCTTTTATTTGCTTTCTTTTATCATTTTCATAGAAAATTTAATTTAAATAATATTTTTGA
Found at i:10120721 original size:43 final size:42
Alignment explanation
Indices: 10120625--10120782 Score: 210
Period size: 42 Copynumber: 3.7 Consensus size: 42
10120615 TTTTTGCGAG
* * *
10120625 AAGCGTCGCTAAAGGTCATGGTCTTTAGCAGCTTTGTGACAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGGTTTGTGATAA
*
10120667 AAGCGTTGCTAAAGGTCATGGTCTTTAGCGGTGTTTGTGATAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGG-GTTTGTGATAA
** *
10120710 AAGCACCGCTAAAGGTCATGGT-TTTAGCGACGTTTGTGATAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCG-GGTTTGTGATAA
* *
10120752 AAGCGTTGCTAAAGGTCATGGCCTTTAGCGG
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGG
10120783 CGGTGTCTAT
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGGTTTGTGATAA
Found at i:10123208 original size:21 final size:22
Alignment explanation
Indices: 10123168--10123214 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
10123158 CTCTGCTCAA
10123168 ACTCCACCTGCTGCAGAGTAC-
1 ACTCCACCTGCTGCAGAGTACT
10123189 ACTCCACCTGCTGC-GAAGTACT
1 ACTCCACCTGCTGCAG-AGTACT
10123211 ACTC
1 ACTC
10123215 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 1 0.04
21 19 0.79
22 4 0.17
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCAGAGTACT
Found at i:10129181 original size:23 final size:23
Alignment explanation
Indices: 10129112--10129189 Score: 72
Period size: 23 Copynumber: 3.3 Consensus size: 23
10129102 TTTTGTTTAA
10129112 ATTTT-AATATATATATATTA-TT
1 ATTTTAAAT-TATATATATTATTT
* *
10129134 ATTGTTAACAGTT-TACATTTTATTT
1 ATT-TTAA-A-TTATATATATTATTT
10129159 ATTTTAAATTATATATATTATTT
1 ATTTTAAATTATATATATTATTT
*
10129182 ATATTAAA
1 ATTTTAAA
10129190 CTGTTTGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
22 5 0.11
23 20 0.44
24 12 0.27
25 7 0.16
26 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (23 bp):
ATTTTAAATTATATATATTATTT
Found at i:10129293 original size:26 final size:26
Alignment explanation
Indices: 10129236--10129331 Score: 70
Period size: 26 Copynumber: 3.7 Consensus size: 26
10129226 TGCTTAATAC
*
10129236 ATTATTTTATCTTAAATTGTTTTATAA
1 ATTA-TTTATATTAAATTGTTTTATAA
* * *
10129263 ATTATTTATATTAGATTTTTTTATAT
1 ATTATTTATATTAAATTGTTTTATAA
* * **
10129289 TTTATTCT-T-TTAAATTCTTTTATGT
1 ATTATT-TATATTAAATTGTTTTATAA
* *
10129314 ATTGTTTATTTTAAATTG
1 ATTATTTATATTAAATTG
10129332 GTTTGAATTA
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.02
25 18 0.33
26 31 0.56
27 5 0.09
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (26 bp):
ATTATTTATATTAAATTGTTTTATAA
Found at i:10131518 original size:14 final size:15
Alignment explanation
Indices: 10131499--10131528 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10131489 ACTTTGTATA
10131499 TTTTAAA-TTTATTT
1 TTTTAAATTTTATTT
10131513 TTTTAAATTTTATTT
1 TTTTAAATTTTATTT
10131528 T
1 T
10131529 AAATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTAAATTTTATTT
Found at i:10139543 original size:789 final size:789
Alignment explanation
Indices: 10138014--10139596 Score: 2887
Period size: 789 Copynumber: 2.0 Consensus size: 789
10138004 TGGGCTGAGG
*
10138014 CAGTTATATATGCGTGCCATCTAATTAACCGGTTACCATCAGCTGCAATAAATGGAAAAACTCCT
1 CAGTTATATATGCGTGCCATCTAATTAACCGATTACCATCAGCTGCAATAAATGGAAAAACTCCT
* * *
10138079 ATGGAGATGTGGACTGGTAAACCTGTTATTGATTATGATTCTTTACATATTTTTGGTTCCACTGC
66 ATAGAGATGTGGACTGGTAAACCTGCTACTGATTATGATTCTTTACATATTTTTGGTTCCACTGC
*
10138144 ATATTATCATGTAAAAGAATCTAAGTTAGACCCAAGAGCAGAGAAAGCATTATTCGTAGGTATAA
131 ATATTATCATGTAAAAGAATCTAAGTTAGACCCAAGAGCAAAGAAAGCATTATTCGTAGGTATAA
*
10138209 CTGGTGGAGTAAAAGGATACCGTCTCTGGTGTCCTGATACAAGGAAGATTGTTTTCAGTAGAGAT
196 CTGGTGGAGTAAAAGGATACCGTATCTGGTGTCCTGATACAAGGAAGATTGTTTTCAGTAGAGAT
*
10138274 GTGACTTTTGATGAATCAACAAAGATAAAGTACAATGATTCACAAAAGGATGACAAAACCAATAG
261 GTGACTTTTGATGAATCAACAAAGATAAAGTACAAGGATTCACAAAAGGATGACAAAACCAATAG
* * *
10138339 TACTTTGCAGCAGGTAGAGCTTGAAAAGGTTAATGATGATCCAGCTAATATTGAAGGAATAAATG
326 TACTTTACAGCAGGTAGAGCTTGAAAAGGTTAATGATAATCCAACTAATATTGAAGGAATAAATG
*
10138404 ATGATGAAGTTTCGACCCAAGAACTTCTACAGCAACAAGATTCAATTACATATAGGGGGCCAAGA
391 ATGATGAAGTTTCGACCCAAGAACTTCTACAGCAACAAGATTCAATTACATATAGGAGGCCAAGA
*
10138469 AGAGAGATTCGTAAGCCTGCTCGCTTTGATGATATAGTGGCCTATGCACTTCCAATTGCAGATGA
456 AGAGAGATTCGTAAGCCTGCTCGCTTTGATGATATAGTGGCCTATGCACTTCCAATTACAGATGA
* *
10138534 TGATGTTCCTTCTACTTACACAGAAGCAATAAGTAACCTTGATGGTGTAAAGTGGAAGCAAGTTA
521 TGATGTTCCTTCTACTTACACAAAAGCAATAAGTAACCCTGATGGTGTAAAGTGGAAGCAAGTTA
*
10138599 TGAATGAAGAAATACAGTCTCTTCATAAAAATAGGACTTGGGAGTTGGTGACACTGCCCAAGGGA
586 TGAATGAAGAAATACAGTCTCTTCATAAAAATAGGACTTGAGAGTTGGTGACACTGCCCAAGGGA
*
10138664 AAGAAGACAATTGGATGCAAATGGGTATATGCAAAGAAGGAAGGATTTTTTGGTAAAAATAAAAT
651 AAGAAGACAATTGGATGCAAATGGGTATATGCAAAGAAGGAAGGATTTTCTGGTAAAAATAAAAT
* * *
10138729 TCGATACAAGGCTAGATTGGTAGCAAAGGGTTACGCTCAGAAAGAAGGAATAGACTACAATGAAG
716 TCGATACAAGGCTAGACTAGTAGCAAAGGGTTACACTCAGAAAGAAGGAATAGACTACAATGAAG
10138794 TGTTTTCTC
781 TGTTTTCTC
* *
10138803 CAGTTATATATGTGTGCCATCTAATTAACCGATTACCATTAGCTGCAATAAATGGAAAAACTCCT
1 CAGTTATATATGCGTGCCATCTAATTAACCGATTACCATCAGCTGCAATAAATGGAAAAACTCCT
*
10138868 ATAGAGATGTGGACTGGTAAACCTGCTACTGATTATGATTCTTTACATATTTTTGGTTGCACTGC
66 ATAGAGATGTGGACTGGTAAACCTGCTACTGATTATGATTCTTTACATATTTTTGGTTCCACTGC
10138933 ATATTATCATGTAAAAGAATCTAAGTTAGACCCAAGAGCAAAGAAAGCATTATTCGTAGGTATAA
131 ATATTATCATGTAAAAGAATCTAAGTTAGACCCAAGAGCAAAGAAAGCATTATTCGTAGGTATAA
10138998 CTGGTGGAGTAAAAGGATACCGTATCTGGTGTCCTGATACAAGGAAGATTGTTTTCAGTAGAGAT
196 CTGGTGGAGTAAAAGGATACCGTATCTGGTGTCCTGATACAAGGAAGATTGTTTTCAGTAGAGAT
* *
10139063 GTGACTTTTGATGAATCAACAATGATAAAGTACAAGGATTCACAAAAGGATGACAAAACCAGTAG
261 GTGACTTTTGATGAATCAACAAAGATAAAGTACAAGGATTCACAAAAGGATGACAAAACCAATAG
*
10139128 TACTTTACAGCAGGTGGAGCTTGAAAAGGTTAATGATAATCCAACTAATATTGAAGGAATAAATG
326 TACTTTACAGCAGGTAGAGCTTGAAAAGGTTAATGATAATCCAACTAATATTGAAGGAATAAATG
10139193 ATGATGAAGTTTCGACCCAAGAACTTCTACAGCAACAAGATTCAATTACATATAGGAGGCCAAGA
391 ATGATGAAGTTTCGACCCAAGAACTTCTACAGCAACAAGATTCAATTACATATAGGAGGCCAAGA
*
10139258 AGAGAGATTCGTATGCCTGCTCGCTTTGATGATATAGTGGCCTATGCACTTCCAATTACAGATGA
456 AGAGAGATTCGTAAGCCTGCTCGCTTTGATGATATAGTGGCCTATGCACTTCCAATTACAGATGA
*
10139323 TGATGTTCTTTCTACTTACACAAAAGCAATAAGTAACCCTGATGGTGTAAAGTGGAAGCAAGTTA
521 TGATGTTCCTTCTACTTACACAAAAGCAATAAGTAACCCTGATGGTGTAAAGTGGAAGCAAGTTA
*
10139388 TGAATGAAGAAATGCAGTCTCTTCATAAAAATAGGACTTGAGAGTTGGTGACACTGCCCAAGGGA
586 TGAATGAAGAAATACAGTCTCTTCATAAAAATAGGACTTGAGAGTTGGTGACACTGCCCAAGGGA
* *
10139453 AAGAAGGCAATTGGATGCAAATGGGTATATGCAAAGAAGGAAGGATTTTCTGGTAAAAATGAAAT
651 AAGAAGACAATTGGATGCAAATGGGTATATGCAAAGAAGGAAGGATTTTCTGGTAAAAATAAAAT
*
10139518 TCGATACAATGCTAGACTAGTAGCAAAGGGTTACACTCAGAAAGAAGGAATAGACTACAATGAAG
716 TCGATACAAGGCTAGACTAGTAGCAAAGGGTTACACTCAGAAAGAAGGAATAGACTACAATGAAG
10139583 TGTTTTCTC
781 TGTTTTCTC
10139592 CAGTT
1 CAGTT
10139597 GTGAAGCATT
Statistics
Matches: 763, Mismatches: 31, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
789 763 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (789 bp):
CAGTTATATATGCGTGCCATCTAATTAACCGATTACCATCAGCTGCAATAAATGGAAAAACTCCT
ATAGAGATGTGGACTGGTAAACCTGCTACTGATTATGATTCTTTACATATTTTTGGTTCCACTGC
ATATTATCATGTAAAAGAATCTAAGTTAGACCCAAGAGCAAAGAAAGCATTATTCGTAGGTATAA
CTGGTGGAGTAAAAGGATACCGTATCTGGTGTCCTGATACAAGGAAGATTGTTTTCAGTAGAGAT
GTGACTTTTGATGAATCAACAAAGATAAAGTACAAGGATTCACAAAAGGATGACAAAACCAATAG
TACTTTACAGCAGGTAGAGCTTGAAAAGGTTAATGATAATCCAACTAATATTGAAGGAATAAATG
ATGATGAAGTTTCGACCCAAGAACTTCTACAGCAACAAGATTCAATTACATATAGGAGGCCAAGA
AGAGAGATTCGTAAGCCTGCTCGCTTTGATGATATAGTGGCCTATGCACTTCCAATTACAGATGA
TGATGTTCCTTCTACTTACACAAAAGCAATAAGTAACCCTGATGGTGTAAAGTGGAAGCAAGTTA
TGAATGAAGAAATACAGTCTCTTCATAAAAATAGGACTTGAGAGTTGGTGACACTGCCCAAGGGA
AAGAAGACAATTGGATGCAAATGGGTATATGCAAAGAAGGAAGGATTTTCTGGTAAAAATAAAAT
TCGATACAAGGCTAGACTAGTAGCAAAGGGTTACACTCAGAAAGAAGGAATAGACTACAATGAAG
TGTTTTCTC
Found at i:10143728 original size:15 final size:16
Alignment explanation
Indices: 10143708--10143741 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10143698 ATTGAAAATA
10143708 TTAA-TTTTCAATGAT
1 TTAATTTTTCAATGAT
*
10143723 TTAATTTTTCAATGGT
1 TTAATTTTTCAATGAT
10143739 TTA
1 TTA
10143742 CCAATGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (16 bp):
TTAATTTTTCAATGAT
Found at i:10144214 original size:20 final size:20
Alignment explanation
Indices: 10144191--10144243 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 20
10144181 TATAAATACT
10144191 TAATTATTTATATATTAATA
1 TAATTATTTATATATTAATA
*
10144211 T-A--ATTTATCATTTTAATA
1 TAATTATTTAT-ATATTAATA
10144229 -AATTATTTA-ATATTA
1 TAATTATTTATATATTA
10144244 TAGTTTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
17 6 0.22
18 14 0.52
19 1 0.04
20 6 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATTATTTATATATTAATA
Found at i:10144363 original size:36 final size:36
Alignment explanation
Indices: 10144264--10144342 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
10144254 TAACAATAAT
* *
10144264 TTTA-AATAATATTATTAAT-ATA-TA-TTAAAAATA
1 TTTATAATAATATT-TTAATAATACAATTTATAAATA
*
10144297 TTTATATTAATATTTTAATAATACAATTTATAAATA
1 TTTATAATAATATTTTAATAATACAATTTATAAATA
10144333 TTTATAATAA
1 TTTATAATAA
10144343 ATCTTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
33 9 0.24
34 11 0.29
35 1 0.03
36 17 0.45
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (36 bp):
TTTATAATAATATTTTAATAATACAATTTATAAATA
Found at i:10144525 original size:15 final size:15
Alignment explanation
Indices: 10144505--10144533 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10144495 TTCATAAACT
10144505 GAAAAATTAAGTTCA
1 GAAAAATTAAGTTCA
10144520 GAAAAATTAAGTTC
1 GAAAAATTAAGTTC
10144534 TGAATTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (15 bp):
GAAAAATTAAGTTCA
Found at i:10146640 original size:65 final size:66
Alignment explanation
Indices: 10146571--10146708 Score: 190
Period size: 66 Copynumber: 2.1 Consensus size: 66
10146561 TCAAGATTAA
* * * *
10146571 AATTTTAGAA-TTCAAAAAATTAGTGACTTGGGATGATCTAAT-AAGAGAATATGAGCTAAATCT
1 AATTTTAAAATTTCAAAAAATTAGAGACTTCGAATGATCTAATCAA-AGAATATGAGCTAAATCT
10146634 TC
65 TC
* * *
10146636 AATTTTAAAATTTGAAAAATTTAGAGACTTCGAATGATCTAATCAAAGAATATGAGTTAAATCTT
1 AATTTTAAAATTTCAAAAAATTAGAGACTTCGAATGATCTAATCAAAGAATATGAGCTAAATCTT
10146701 C
66 C
10146702 AATTTTA
1 AATTTTA
10146709 CTGTAACACC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
65 9 0.14
66 53 0.83
67 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (66 bp):
AATTTTAAAATTTCAAAAAATTAGAGACTTCGAATGATCTAATCAAAGAATATGAGCTAAATCTT
C
Found at i:10149528 original size:24 final size:25
Alignment explanation
Indices: 10149486--10149533 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
10149476 TCTGGTGCTC
* *
10149486 TCTGTTAAAGTGCTTTTCGGAGCTT
1 TCTGTTAAAGTACTCTTCGGAGCTT
10149511 TCTGTT-AAGTACTCTTCGGAGCT
1 TCTGTTAAAGTACTCTTCGGAGCT
10149534 ACCCGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.42
Consensus pattern (25 bp):
TCTGTTAAAGTACTCTTCGGAGCTT
Found at i:10152361 original size:40 final size:40
Alignment explanation
Indices: 10152324--10152402 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
10152314 CAAGGGCACT
***
10152324 AAAGTGCAATCAGGGGCATTGGAGTGCATTCAGGGGCATG
1 AAAGTGCAATCAGGGGCACCAGAGTGCATTCAGGGGCATG
* ** *
10152364 AATGTGCTGTCAGGGGCACCAGAGTGCATTTAGGGGCAT
1 AAAGTGCAATCAGGGGCACCAGAGTGCATTCAGGGGCAT
10152403 AGTTGTGCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.25, C:0.16, G:0.37, T:0.22
Consensus pattern (40 bp):
AAAGTGCAATCAGGGGCACCAGAGTGCATTCAGGGGCATG
Found at i:10152370 original size:20 final size:20
Alignment explanation
Indices: 10152325--10152381 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
10152315 AAGGGCACTA
*
10152325 AAGTGCAATCAGGGGCATTG
1 AAGTGCATTCAGGGGCATTG
*
10152345 GAGTGCATTCAGGGGCA-TG
1 AAGTGCATTCAGGGGCATTG
10152364 AATGTGC-TGTCAGGGGCA
1 AA-GTGCAT-TCAGGGGCA
10152382 CCAGAGTGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 4 0.12
20 28 0.88
ACGTcount: A:0.25, C:0.16, G:0.39, T:0.21
Consensus pattern (20 bp):
AAGTGCATTCAGGGGCATTG
Found at i:10156084 original size:126 final size:125
Alignment explanation
Indices: 10155844--10156222 Score: 528
Period size: 125 Copynumber: 3.0 Consensus size: 125
10155834 TAAGGGTTTT
**** ** *
10155844 TAGGTC-CTGGAAGAAATAATTTCGAGTTGACGTTTCTGATAAAATAATATAAAATCGCTTCTAG
1 TAGGTCAC-GGAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAG
* * *
10155908 CAGGATGATATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTAAAG
65 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
10155969 TAGGTCACGGAAGAAATAATTGTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTAG
1 TAGGTCACGGAAGAAATAATT-TTTTTTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAG
* * * * *
10156034 CAGGATGCTATTTGAGAAGAACTTGTGAAATTGCGGCCTTGT-CAGCGCGCTTTTGCTACAG
65 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGA-CGCGCTTTTGCTACAG
* * * *
10156095 TAGGTCATGTAAGAAATAATTTTTTTTTGACGTTTTTGAGCAAATAATATAAAATTGCTTCTAAC
1 TAGGTCACGGAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGC
*
10156160 AGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
10156220 TAG
1 TAG
10156223 CATGTTTGGG
Statistics
Matches: 223, Mismatches: 27, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
125 116 0.52
126 107 0.48
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (125 bp):
TAGGTCACGGAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGC
AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:10156178 original size:125 final size:126
Alignment explanation
Indices: 10155870--10156222 Score: 530
Period size: 126 Copynumber: 2.8 Consensus size: 126
10155860 TAATTTCGAG
** * *
10155870 TTGACGTTTCTGATAAAATAATATAAAATCGCTTCTAGCAGGATGATATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
10155935 AAATCGCGCCCTCGTGGATGCGCTTTTGCTAAAGTAGGTCACGGAAGAAATAATTGTTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTGTTTTT
* *
10155996 TTGACGTTTCTGAGCAAATAGTATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAACTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * * * *
10156061 AAATTGCGGCCTTGT-CAGCGCGCTTTTGCTACAGTAGGTCATGTAAGAAATAATT-TTTTT
66 AAATCGCGCCCTCGTGGA-CGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTGTTTTT
* * *
10156121 TTGACGTTTTTGAGCAAATAATATAAAATTGCTTCTAACAGGATGCTATTTGAGAAGAATTTATG
1 TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
10156186 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
10156223 CATGTTTGGG
Statistics
Matches: 202, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
125 97 0.48
126 105 0.52
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTGTTTTT
Found at i:10159812 original size:23 final size:23
Alignment explanation
Indices: 10159777--10159821 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
10159767 TGGAGTATAA
* *
10159777 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
10159800 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
10159822 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:10160536 original size:83 final size:83
Alignment explanation
Indices: 10160389--10160820 Score: 599
Period size: 83 Copynumber: 5.2 Consensus size: 83
10160379 CAGTGCCTAT
* *
10160389 CAGGTTTATTGCCAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
1 CAGGCTTAATGCCAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
10160454 ATCAGAC-TTACGTCTAG
66 ATCAGACTTTACGTCTAG
* *
10160471 CAGGCTTAATGCCAGTGAAATAATTCCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAA
1 CAGGCTTAATGCCAGTGAAA-CATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAA
10160536 TATCAGACTTTACGTCTAG
65 TATCAGACTTTACGTCTAG
*
10160555 CAGGCTTAATGCCGGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
1 CAGGCTTAATGCCAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
10160620 ATCAGAC-TTACGTCTAG
66 ATCAGACTTTACGTCTAG
*** * * *
10160637 CAGGCTTAATGTTGGTGAAAGAATTCCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAG
1 CAGGCTTAATGCCAGTGAAA-CATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAA
10160702 TATCAGACTTTACGTCTAG
65 TATCAGACTTTACGTCTAG
* * * * * *
10160721 CAGGCTTAGTG-CGGTGAAACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TACTG
1 CAGGCTTAATGCCAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAAC-A
* *
10160783 A-ATCAGGCTTTAAGTCTAG
64 ATATCAGACTTTACGTCTAG
10160802 CAGGC-TAAGTGCCAGTGAA
1 CAGGCTTAA-TGCCAGTGAA
10160821 TCTGTTTAAA
Statistics
Matches: 317, Mismatches: 25, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
80 2 0.01
81 28 0.09
82 82 0.26
83 156 0.49
84 49 0.15
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (83 bp):
CAGGCTTAATGCCAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
ATCAGACTTTACGTCTAG
Found at i:10160800 original size:41 final size:41
Alignment explanation
Indices: 10160413--10160820 Score: 396
Period size: 41 Copynumber: 9.9 Consensus size: 41
10160403 GTGAAACATT
*
10160413 TCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAACAATA
1 TCAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGA-A
* *
10160455 TCAGAC-TTACGTCTAGCAGGCTTAA-TGCCAGTGAAA-TAA
1 TCAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGAA
*
10160494 TTCCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAACAATA
1 -T-CAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGA-A
*
10160538 TCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAAC-ATT
1 TCAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGA-A
*
10160579 TCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAACAATA
1 TCAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGA-A
**
10160621 TCAGAC-TTACGTCTAGCAGGCTTAA-TGTTGGTGAAA-GAA
1 TCAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAACGAA
*
10160660 TTCCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTGAAACAGTA
1 -T-CAGACTTTACGTCTAGCAGGC-TAAGTGCCGGTGAAAC-GAA
* *
10160704 TCAGACTTTACGTCTAGCAGGCTTAGTG-CGGTGAAAC-ATT
1 TCAGACTTTACGTCTAGCAGGCTAAGTGCCGGTGAAACGA-A
* * *
10160744 TCAGACTATATGTCTAGCAGGCTAAGTGCCGGTG-TACTGAA
1 TCAGACTTTACGTCTAGCAGGCTAAGTGCCGGTGAAAC-GAA
* * *
10160785 TCAGGCTTTAAGTCTAGCAGGCTAAGTGCCAGTGAA
1 TCAGACTTTACGTCTAGCAGGCTAAGTGCCGGTGAA
10160821 TCTGTTTAAA
Statistics
Matches: 324, Mismatches: 25, Indels: 34
0.85 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 31 0.10
41 153 0.47
42 132 0.41
43 3 0.01
44 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (41 bp):
TCAGACTTTACGTCTAGCAGGCTAAGTGCCGGTGAAACGAA
Found at i:10162795 original size:116 final size:116
Alignment explanation
Indices: 10162586--10162803 Score: 391
Period size: 116 Copynumber: 1.9 Consensus size: 116
10162576 TGATAAATTG
* *
10162586 TATTTAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATACAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
10162651 TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
10162702 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
10162767 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
10162804 CGTTAAGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:10162915 original size:22 final size:22
Alignment explanation
Indices: 10162890--10162945 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
10162880 AAATATAGAT
10162890 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
*
10162912 TTGAGAGAATTTTGGAAGGCAA
1 TTGAGAGAATTTTGGAAGGAAA
10162934 TTGAGAGGAATT
1 TTGAGA-GAATT
10162946 GAGAGGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 27 0.84
23 5 0.16
ACGTcount: A:0.38, C:0.02, G:0.32, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:10164940 original size:3 final size:3
Alignment explanation
Indices: 10164932--10164965 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
10164922 TTCAGTTTAA
* *
10164932 TAT TAT TAT TAT TAC TAT TAT TAT TAG TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10164966 TTTTTATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:10165069 original size:21 final size:24
Alignment explanation
Indices: 10165015--10165069 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 24
10165005 TTATTATGTA
10165015 GTATTATTTTAAGTTTTCCATATAT
1 GTATTATTTTAAG-TTTCCATATAT
10165040 -TATTA-TTTAA-TTT-CATA-AT
1 GTATTATTTTAAGTTTCCATATAT
10165059 GTATTATTTTA
1 GTATTATTTTA
10165070 TATATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 2 0.07
20 9 0.32
21 7 0.25
23 5 0.18
24 5 0.18
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
GTATTATTTTAAGTTTCCATATAT
Found at i:10166582 original size:50 final size:50
Alignment explanation
Indices: 10166507--10166606 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
10166497 TTTAAGAGAG
10166507 AGAGTAGGAGAAATAAAGAATGTAACTTGCAAGAGATCAAAAACCCAAAT
1 AGAGTAGGAGAAATAAAGAATGTAACTTGCAAGAGATCAAAAACCCAAAT
10166557 AGAGTAGGAGAAATAAAGAATGTAACTTGCAAGAGATCAAAAACCCAAAT
1 AGAGTAGGAGAAATAAAGAATGTAACTTGCAAGAGATCAAAAACCCAAAT
10166607 CAAACATTAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.52, C:0.12, G:0.20, T:0.16
Consensus pattern (50 bp):
AGAGTAGGAGAAATAAAGAATGTAACTTGCAAGAGATCAAAAACCCAAAT
Found at i:10167599 original size:155 final size:154
Alignment explanation
Indices: 10167175--10167740 Score: 872
Period size: 155 Copynumber: 3.7 Consensus size: 154
10167165 TTTAGTGTGT
* *
10167175 TTTTTATTGAAAGTAATAAAATTCGGGGAAAAAATACGAACAAATGGCCGAAA-AAAGGGTTTTT
1 TTTTTATTGAAAGTAATAAAA-TCCGGAAAAAAATACGAACAAATGGCCGAAATAAA-GG-TTTT
* *
10167239 TTTTAAAATTTATTTAAAAAACACAGTAAATGAATACATTTCAAACATAATGTACTAAAATAATG
63 TTTT-AAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATC
*
10167304 TAAAATAATAAAA-TATGAAAATAATATA
127 TAAAATAATAAAATTAT-AAAATAGTATA
* * *
10167332 CTTTTATTAAAAGTAATAAAATCCGGAAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTT
1 TTTTTATTGAAAGTAATAAAATCCGGAAAAAAATACGAACAAATGGCCGAAATAAAGGTTTTTTT
* *
10167397 TAAATTTATTTAAAAAACACACTAAATGAATACAATTCAAACGTAATGTACTAAAATAATCTAAA
66 TAAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATCTAAA
10167462 ATAATAAAATTATAAAATAGTATA
131 ATAATAAAATTATAAAATAGTATA
* * *
10167486 TTTTTATTGAAAGTAATAAAATCCGGAAAAAAAATACGAACAAAGGGCTGAAATAAAAGTTTTTT
1 TTTTTATTGAAAGTAATAAAATCCGG-AAAAAAATACGAACAAATGGCCGAAATAAAGGTTTTTT
* *
10167551 TTAAATTTATTTAAAACACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATTTAA
65 TTAAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATCTAA
*
10167616 AATAATAAAATTAGAAAATAGTATA
130 AATAATAAAATTATAAAATAGTATA
* *
10167641 TTTTT-TT-AAAGTAATAAAATCCAGGAAAAAAATACGAACAAAAGGCCGAAATAATGG-TTTTT
1 TTTTTATTGAAAGTAATAAAATCC-GGAAAAAAATACGAACAAATGGCCGAAATAAAGGTTTTTT
10167703 TTAAATTTATTTAAAAAACACACTAAATGAATACATTT
65 TTAAATTTATTTAAAAAACACACTAAATGAATACATTT
10167741 TTAAAAAAAT
Statistics
Matches: 379, Mismatches: 26, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
152 42 0.11
153 43 0.11
154 107 0.28
155 135 0.36
156 31 0.08
157 21 0.06
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.31
Consensus pattern (154 bp):
TTTTTATTGAAAGTAATAAAATCCGGAAAAAAATACGAACAAATGGCCGAAATAAAGGTTTTTTT
TAAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATCTAAA
ATAATAAAATTATAAAATAGTATA
Found at i:10167998 original size:154 final size:154
Alignment explanation
Indices: 10167745--10168058 Score: 490
Period size: 154 Copynumber: 2.0 Consensus size: 154
10167735 ACATTTTTAA
* *
10167745 AAAAATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTAT
1 AAAAATATATTATTTTCTAATTTTATTATTTTAAATTATTTTAGTACAATATGTTTGAAATGTAT
* *
10167810 TCATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCAGCCTTTTATTCGTATTTT
66 TAATTTAGTGTGTTTTTTAAATAAATTT-AAAAAAACCCTTATTTCAGCCCTTTATTCGTATTTT
10167875 TTT-CCGGATTTTATTACGTTCAAT
130 TTTCCCGGATTTTATTACGTTCAAT
10167899 AAAAATATATTATTTTCGT-ATTTTATTATTTTAAATTATTTTAGTACAATATGTTTGAAATGTA
1 AAAAATATATTATTTTC-TAATTTTATTATTTTAAATTATTTTAGTACAATATGTTTGAAATGTA
* * * *
10167963 TTAATTTATTGT-TTTTTTAAATAAATTTAAGAAAAACCCTTATTTCTGCCCTTTGTTTGTATTT
65 TTAATTTAGTGTGTTTTTTAAATAAATTTAA-AAAAACCCTTATTTCAGCCCTTTATTCGTATTT
*
10168027 TTTTCCCCGGATTTTATTACTTTCAAT
129 TTTT-CCCGGATTTTATTACGTTCAAT
10168054 AAAAA
1 AAAAA
10168059 AAACACACTA
Statistics
Matches: 147, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
152 2 0.01
153 49 0.33
154 70 0.48
155 26 0.18
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.51
Consensus pattern (154 bp):
AAAAATATATTATTTTCTAATTTTATTATTTTAAATTATTTTAGTACAATATGTTTGAAATGTAT
TAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAACCCTTATTTCAGCCCTTTATTCGTATTTTT
TTCCCGGATTTTATTACGTTCAAT
Found at i:10176835 original size:3 final size:3
Alignment explanation
Indices: 10176827--10176876 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
10176817 TTAAATGTAG
10176827 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10176875 AA
1 AA
10176877 GGGCAAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10201651 original size:5 final size:5
Alignment explanation
Indices: 10201641--10201666 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10201631 TGAGCATTCG
10201641 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
10201667 AATTTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:10202179 original size:19 final size:19
Alignment explanation
Indices: 10202146--10202193 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
10202136 TAAACAATTC
10202146 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
10202163 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
10202182 AATAATATAAAT
1 AATAATATAAAT
10202194 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:10202332 original size:16 final size:16
Alignment explanation
Indices: 10202282--10202333 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 16
10202272 GGGTGAGAAG
10202282 TAAAAGTTTAGGAGGGAAA
1 TAAAAGTTT--GAGGG-AA
10202301 TAAAAAGTTTTG-GGGAA
1 T-AAAAG-TTTGAGGGAA
10202318 TAAAAGTTTGAGGGAA
1 TAAAAGTTTGAGGGAA
10202334 AGTAAATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
15 4 0.13
16 10 0.33
17 3 0.10
18 3 0.10
19 2 0.07
20 5 0.17
21 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (16 bp):
TAAAAGTTTGAGGGAA
Found at i:10211909 original size:5 final size:5
Alignment explanation
Indices: 10211899--10211925 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
10211889 ATAAAAAGTA
10211899 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
10211926 TAGAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:10211932 original size:15 final size:15
Alignment explanation
Indices: 10211899--10211934 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
10211889 ATAAAAAGTA
*
10211899 AAAATAAAATAAAAT
1 AAAATAAAATAAAAG
*
10211914 AAAATAAAATAATAG
1 AAAATAAAATAAAAG
10211929 AAAATA
1 AAAATA
10211935 TATATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAAATAAAAG
Found at i:10215435 original size:16 final size:17
Alignment explanation
Indices: 10215416--10215447 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
10215406 TTATTTTCAA
10215416 TTTTT-AAATT-TAAAC
1 TTTTTCAAATTCTAAAC
10215431 TTTTTCAAATTCTAAAC
1 TTTTTCAAATTCTAAAC
10215448 ATTAAGCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTTCAAATTCTAAAC
Found at i:10215587 original size:28 final size:28
Alignment explanation
Indices: 10215559--10215611 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
10215549 TTTTTTAATT
*
10215559 TTTTTTA-ATTTTAT-AAAATTTAAATA
1 TTTTTTATTTTTTATAAAAATTTAAATA
10215585 TTTTTTCATTTTTTATAAAAATTTAAA
1 TTTTTT-ATTTTTTATAAAAATTTAAA
10215612 ATTATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 1 0.04
28 6 0.26
29 10 0.43
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTTTTATTTTTTATAAAAATTTAAATA
Found at i:10215612 original size:36 final size:36
Alignment explanation
Indices: 10215546--10215614 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
10215536 TGTACAATAT
* **
10215546 ATATTTTTTAATTTTTTTTAATTTTATAAAATTTAA
1 ATATTTTTTAATTTTTTTAAAAATTATAAAATTTAA
*
10215582 ATATTTTTTCATTTTTTATAAAAATT-TAAAATT
1 ATATTTTTTAATTTTTT-TAAAAATTATAAAATT
10215615 ATATATTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 23 0.82
37 5 0.18
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (36 bp):
ATATTTTTTAATTTTTTTAAAAATTATAAAATTTAA
Found at i:10215656 original size:23 final size:25
Alignment explanation
Indices: 10215613--10215683 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 25
10215603 AAATTTAAAA
10215613 TTATATATTATTATGACTTTTTAA-CAT
1 TTATATATTATT-T--CTTTTTAATCAT
*
10215640 TTATAT-TTATATT-TTTTTAATTAT
1 TTATATATTAT-TTCTTTTTAATCAT
10215664 TTATATATTATTTCTTTTTA
1 TTATATATTATTTCTTTTTA
10215684 CTTTTTAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
23 7 0.18
24 10 0.26
25 10 0.26
26 5 0.13
27 7 0.18
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (25 bp):
TTATATATTATTTCTTTTTAATCAT
Found at i:10220694 original size:21 final size:23
Alignment explanation
Indices: 10220663--10220704 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
10220653 AGCTTTATTT
10220663 TTCACCCATTTGTTC-TTTTAAC
1 TTCACCCATTTGTTCATTTTAAC
10220685 TTCA-CCATTTGTTCATTTTA
1 TTCACCCATTTGTTCATTTTA
10220705 TAGCTATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.19, C:0.24, G:0.05, T:0.52
Consensus pattern (23 bp):
TTCACCCATTTGTTCATTTTAAC
Found at i:10222219 original size:91 final size:91
Alignment explanation
Indices: 10222067--10222456 Score: 651
Period size: 91 Copynumber: 4.3 Consensus size: 91
10222057 TACGTATGAT
* *
10222067 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
*
10222130 GATCAGATAAGTGTAGCT-AGGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
* *
10222155 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTAAAGCCACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
*
10222220 TGATCAGATAAGTGTAGCTAAAGCTAT
65 TGATCAGATAAGTGTAGCTAAAGCTAC
* * *
10222247 CACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCTAGGCTACCACTTATCATTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
10222312 GATCAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
10222338 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
*
10222403 TGATCAGATAAGTGTAGCTAAAGCTAT
65 TGATCAGATAAGTGTAGCTAAAGCTAC
10222430 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10222457 AGTACTCAAA
Statistics
Matches: 281, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
88 10 0.04
89 5 0.02
90 19 0.07
91 129 0.46
92 118 0.42
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTAC
Found at i:10222220 original size:46 final size:46
Alignment explanation
Indices: 10222067--10222456 Score: 655
Period size: 46 Copynumber: 8.6 Consensus size: 46
10222057 TACGTATGAT
* *
10222067 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
10222110 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
10222155 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTAAAGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
10222201 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
10222247 CACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
10222292 CACTTATCATTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
10222338 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
10222384 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
10222430 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10222457 AGTACTCAAA
Statistics
Matches: 328, Mismatches: 15, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
43 10 0.03
44 5 0.02
45 105 0.32
46 208 0.63
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:10222329 original size:137 final size:137
Alignment explanation
Indices: 10222067--10222456 Score: 669
Period size: 137 Copynumber: 2.9 Consensus size: 137
10222057 TACGTATGAT
* *
10222067 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
*
10222129 TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTA
66 TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA
10222194 AAGCCAC
131 AAGCCAC
*
10222201 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
* *
10222266 TGATTAGATAAGTGTAGCTAGGCTACCACTTATCATTTTGTCACTTGATCAGATAAGTGTAGCTA
66 TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA
*
10222331 AAGCTAC
131 AAGCCAC
10222338 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
* *
10222403 TGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTTGATCAGA
66 TGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACTTGATCAGA
10222457 AGTACTCAAA
Statistics
Matches: 240, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
134 10 0.04
135 5 0.02
136 20 0.08
137 174 0.73
138 31 0.13
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (137 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA
AAGCCAC
Found at i:10228301 original size:27 final size:28
Alignment explanation
Indices: 10228192--10228314 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
10228182 GAGATTGGCG
* * * *
10228192 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
10228221 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
10228249 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
10228277 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
10228304 CTGAGTGTGCG
1 CTAAGTGTGCG
10228315 GACTTAATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.27
28 50 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:10228325 original size:27 final size:27
Alignment explanation
Indices: 10228217--10228328 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
10228207 TAAATTGTAC
*
10228217 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
10228245 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
10228273 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
10228300 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTGAT-TATAT
10228329 TTTTGAATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 23 0.29
28 50 0.64
29 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:10228328 original size:56 final size:56
Alignment explanation
Indices: 10228192--10228328 Score: 170
Period size: 55 Copynumber: 2.4 Consensus size: 56
10228182 GAGATTGGCG
* * * *
10228192 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGCTT-AATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
* *
10228249 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGCTTAATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
*
10228304 CTGAGTGTGCG-GACTTAATATATAT
1 CTAAGTGTGCGAG-CTTAAT-TATAT
10228329 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 1 0.01
55 28 0.39
56 27 0.38
57 15 0.21
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGCTTAATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:10230402 original size:20 final size:21
Alignment explanation
Indices: 10230377--10230417 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10230367 GTTGAGAAAA
10230377 TTATTT-AATTAAAAAATAAT
1 TTATTTAAATTAAAAAATAAT
*
10230397 TTATTTAAATTAATAAATAAT
1 TTATTTAAATTAAAAAATAAT
10230418 ATTTATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATTTAAATTAAAAAATAAT
Found at i:10247556 original size:12 final size:12
Alignment explanation
Indices: 10247527--10247578 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
10247517 AATATTAATT
10247527 TTAATTTTTAAA
1 TTAATTTTTAAA
*
10247539 AT-ATTTTTAAA
1 TTAATTTTTAAA
10247550 TTAATTTTTTAAA
1 TTAA-TTTTTAAA
* *
10247563 CTATATATTTAAA
1 TTA-ATTTTTAAA
10247576 TTA
1 TTA
10247579 TATATAGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 10 0.31
12 2 0.06
13 19 0.59
14 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (12 bp):
TTAATTTTTAAA
Found at i:10247574 original size:26 final size:23
Alignment explanation
Indices: 10247527--10247578 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 23
10247517 AATATTAATT
*
10247527 TTAATTTTTAAAATATTTTTAAA
1 TTAATTTTTAAAATATATTTAAA
10247550 TTAATTTTTTAAACTATATATTTAAA
1 TTAA-TTTTTAAA--ATATATTTAAA
10247576 TTA
1 TTA
10247579 TATATAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 4 0.16
24 8 0.32
26 13 0.52
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
TTAATTTTTAAAATATATTTAAA
Found at i:10247589 original size:16 final size:17
Alignment explanation
Indices: 10247564--10247604 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
10247554 TTTTTTAAAC
10247564 TATATATTTAA-AT-TA
1 TATATATTTAATATATA
10247579 TATATAGTTTAATATATA
1 TATATA-TTTAATATATA
10247597 TATATATT
1 TATATATT
10247605 AAAAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.26
16 5 0.22
17 4 0.17
18 8 0.35
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
TATATATTTAATATATA
Found at i:10252029 original size:42 final size:41
Alignment explanation
Indices: 10251942--10252070 Score: 134
Period size: 42 Copynumber: 3.1 Consensus size: 41
10251932 ATGTGTTTAC
* * *
10251942 TTTCCGTTTAGCTCTCACGAGCTTCTGTTTAA-CTTATATGAG
1 TTTCCG-TTAGCTCTTATGAGCTTCTGTTTAACCTT-TATGGG
* * *
10251984 TTTCCGCTTAGCTCTTTTGAGCTTCTATTTAACCCTTATGGG
1 TTTCCG-TTAGCTCTTATGAGCTTCTGTTTAACCTTTATGGG
* * *
10252026 TTTCCGTTCAACTCTTATGAGCTTCCGTTCAACCTTTATGGG
1 TTTCCGTT-AGCTCTTATGAGCTTCTGTTTAACCTTTATGGG
10252068 TTT
1 TTT
10252071 TTGTTTAGCA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.03
42 68 0.94
43 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.44
Consensus pattern (41 bp):
TTTCCGTTAGCTCTTATGAGCTTCTGTTTAACCTTTATGGG
Found at i:10252044 original size:21 final size:20
Alignment explanation
Indices: 10252017--10252070 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
10252007 TCTATTTAAC
10252017 CCTTATGGGTTTCCGTTCAA
1 CCTTATGGGTTTCCGTTCAA
* *
10252037 CTCTTATGAGCTTCCGTTCAA
1 C-CTTATGGGTTTCCGTTCAA
10252058 CCTTTATGGGTTT
1 CC-TTATGGGTTT
10252071 TTGTTTAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CCTTATGGGTTTCCGTTCAA
Found at i:10256048 original size:24 final size:24
Alignment explanation
Indices: 10256016--10256100 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
10256006 ACAGCCTCGT
* *
10256016 CCATTCCCTCCTCGCCCACCAAGA
1 CCATTCCCTCCTCACCCACCACGA
* *
10256040 CCATTCCCTCCTCACCCGCCGCGA
1 CCATTCCCTCCTCACCCACCACGA
*
10256064 CCGA-TCCCTCCTCATCCACCACGA
1 CC-ATTCCCTCCTCACCCACCACGA
10256088 CCATTCCCTCCTC
1 CCATTCCCTCCTC
10256101 CTCATCCTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
23 1 0.02
24 50 0.96
25 1 0.02
ACGTcount: A:0.16, C:0.56, G:0.08, T:0.19
Consensus pattern (24 bp):
CCATTCCCTCCTCACCCACCACGA
Found at i:10264226 original size:5 final size:5
Alignment explanation
Indices: 10264216--10264289 Score: 139
Period size: 5 Copynumber: 14.8 Consensus size: 5
10264206 TGGACCTTTT
10264216 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
*
10264266 TTATA TTATA TTAAA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTAT
10264290 TTCCTTACTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 67 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:10275525 original size:63 final size:63
Alignment explanation
Indices: 10275426--10275549 Score: 239
Period size: 63 Copynumber: 2.0 Consensus size: 63
10275416 GAAGTTAGTG
*
10275426 TAGAAAAGCTTATGCTGCGATATTTGGGGCACCTAATTTCATCTTACTCATTGTGTATTTTTT
1 TAGAAAAGCTTATGCTACGATATTTGGGGCACCTAATTTCATCTTACTCATTGTGTATTTTTT
10275489 TAGAAAAGCTTATGCTACGATATTTGGGGCACCTAATTTCATCTTACTCATTGTGTATTTT
1 TAGAAAAGCTTATGCTACGATATTTGGGGCACCTAATTTCATCTTACTCATTGTGTATTTT
10275550 AGCAACGTTT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (63 bp):
TAGAAAAGCTTATGCTACGATATTTGGGGCACCTAATTTCATCTTACTCATTGTGTATTTTTT
Found at i:10276240 original size:44 final size:44
Alignment explanation
Indices: 10276160--10276405 Score: 266
Period size: 44 Copynumber: 5.6 Consensus size: 44
10276150 TACCATAGCG
* * * *
10276160 AATCTTATCTCCCTGAAGTTACAGTGGAGCATATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGCTACA
* * * *
10276204 AATCTTATCTCGCTGAAGCTGCAATGAAGTAGATTGAAGCGACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGCTACA
* * *
10276248 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGCTACA
* ** *
10276292 AATCTTATCTCCCTAAAGTTATAGTGGAA-CAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGTAGATTGAAGCTACA
*
10276336 AATCTTATCTCGCTGAAGTTGCAGTGGAA-TAGATTGAAG-TGACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGTAGATTGAAGCT-ACA
* *
10276380 AATCCTATAC-CTCTGAAGTTGCAGTG
1 AATCTTAT-CTCCCTGAAGTTGCAGTG
10276406 GGTTGGATTA
Statistics
Matches: 170, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
43 2 0.01
44 165 0.97
45 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGCTACA
Done.