Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 50 of 213
Found at i:13509445 original size:34 final size:34
Alignment explanation
Indices: 13509383--13509447 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
13509373 TAGAGTAAGA
* *
13509383 GTTAGGGATTTAGGGTTTATATATTTAGTGTTAG
1 GTTAGGGATTTAGGGTTTAGATAATTAGTGTTAG
13509417 GTTAGGG-TTTAGGGTTTAGATTAATTAGTGT
1 GTTAGGGATTTAGGGTTTAGA-TAATTAGTGT
13509448 GTTTTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (34 bp):
GTTAGGGATTTAGGGTTTAGATAATTAGTGTTAG
Found at i:13509509 original size:89 final size:89
Alignment explanation
Indices: 13509416--13509588 Score: 256
Period size: 89 Copynumber: 1.9 Consensus size: 89
13509406 TTTAGTGTTA
* * * *
13509416 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGGGG
1 GGTTAGGCTTTAGGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
13509481 TTAGGGGTTAGGGATTTGGGGTTG
66 TTAGGGGTTAGGGATTTGGGGTTG
* * *
13509505 GGTTAGGCTTTATGATTTAGATTAATTAGTGTTTTTTAATTTCTATATTAAATAAGGTTTAGAGG
1 GGTTAGGCTTTAGGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
* * *
13509570 TTAGTGGTTTGGGGTTTGG
66 TTAGGGGTTAGGGATTTGG
13509589 AGTTTGGGGT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (89 bp):
GGTTAGGCTTTAGGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
TTAGGGGTTAGGGATTTGGGGTTG
Found at i:13510021 original size:17 final size:16
Alignment explanation
Indices: 13509988--13510021 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13509978 ATATTAGATT
*
13509988 TAAAAAAATTAATAAA
1 TAAAAAAATTAACAAA
13510004 TAAAAAAATGTAACAAA
1 TAAAAAAAT-TAACAAA
13510021 T
1 T
13510022 TGATACGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAAATTAACAAA
Found at i:13510331 original size:27 final size:27
Alignment explanation
Indices: 13510274--13510332 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
13510264 ATTTTTCTTT
**** *
13510274 AAAAAAATCAATTTATAAAAACGCCGC
1 AAAAAAATCAATTTATAAAAAAAAAGA
*
13510301 AAAAAAATCAATTTATAAAAAAAAATA
1 AAAAAAATCAATTTATAAAAAAAAAGA
13510328 AAAAA
1 AAAAA
13510333 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.68, C:0.10, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAAAAATCAATTTATAAAAAAAAAGA
Found at i:13510594 original size:41 final size:41
Alignment explanation
Indices: 13510537--13510619 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
13510527 AAGTTCTACG
* * *
13510537 ATTTTGGGCCGACTTTGTTATATGGGCATATCCATATAAAA
1 ATTTTGGGCCCACTTTGTTATACGAGCATATCCATATAAAA
*
13510578 ATTTTGGGCCCACTTTGTTATACGAGCTTATCCATATAAAA
1 ATTTTGGGCCCACTTTGTTATACGAGCATATCCATATAAAA
13510619 A
1 A
13510620 ATTTCTCCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (41 bp):
ATTTTGGGCCCACTTTGTTATACGAGCATATCCATATAAAA
Found at i:13515108 original size:43 final size:42
Alignment explanation
Indices: 13515078--13515198 Score: 199
Period size: 43 Copynumber: 2.9 Consensus size: 42
13515068 TTTTTGCTAG
*
13515078 AAGTGCCGTTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAA
1 AAGTGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG-A
13515121 AAGTGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGA
1 AAGTGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGA
*
13515163 AAGCGCCGCTAAAGGTC-TGGTTCTTTAGCGGCGTTT
1 AAGTGCCGCTAAAGGTCTTGG-TCTTTAGCGGCGTTT
13515199 ATTTCTAAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
41 3 0.04
42 32 0.43
43 40 0.53
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.31
Consensus pattern (42 bp):
AAGTGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGA
Found at i:13516620 original size:16 final size:16
Alignment explanation
Indices: 13516599--13516630 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
13516589 TTTTAAGCAT
13516599 TTTAATCGAAAATCAC
1 TTTAATCGAAAATCAC
13516615 TTTAATCGAAAATCAC
1 TTTAATCGAAAATCAC
13516631 CTAGTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
TTTAATCGAAAATCAC
Found at i:13520247 original size:21 final size:21
Alignment explanation
Indices: 13520207--13520247 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13520197 AAATATCTCA
*
13520207 TTATAACTGAACACTATACAT
1 TTATAACTGAACAATATACAT
*
13520228 TTATAACTGAACAATGTACA
1 TTATAACTGAACAATATACA
13520248 GGGTACGAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (21 bp):
TTATAACTGAACAATATACAT
Found at i:13526293 original size:12 final size:12
Alignment explanation
Indices: 13526278--13526308 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13526268 AGGTTTTTTA
13526278 TGTTTTTAAATT
1 TGTTTTTAAATT
13526290 TGTTTTTAAATT
1 TGTTTTTAAATT
*
13526302 TATTTTT
1 TGTTTTT
13526309 CATTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (12 bp):
TGTTTTTAAATT
Found at i:13527262 original size:98 final size:98
Alignment explanation
Indices: 13527120--13527312 Score: 334
Period size: 98 Copynumber: 2.0 Consensus size: 98
13527110 AAATAATAAA
* * * *
13527120 GGAAATATTCCGAGTTTGGGGTTTTGAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAA
1 GGAAATATTCCGAGTTTGGGATTTTGAAGGAATCGTACCATAACGTATTGGGTGTGATTTCTTAA
13527185 ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAT
66 ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAT
13527218 GGAAATATTCCGAGTTTGGGATTTT-AGAGGAATCGTACCATAACGTATTGGGTGTGATTTCTTA
1 GGAAATATTCCGAGTTTGGGATTTTGA-AGGAATCGTACCATAACGTATTGGGTGTGATTTCTTA
13527282 AATCTTGGATAAGTGGATGTTCTTTTAAAGT
65 AATCTTGGATAAGTGGATGTTCTTTTAAAGT
13527313 TTTATTACAC
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 89 0.99
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.38
Consensus pattern (98 bp):
GGAAATATTCCGAGTTTGGGATTTTGAAGGAATCGTACCATAACGTATTGGGTGTGATTTCTTAA
ATCTTGGATAAGTGGATGTTCTTTTAAAGTAAT
Found at i:13527697 original size:23 final size:22
Alignment explanation
Indices: 13527670--13528013 Score: 162
Period size: 23 Copynumber: 14.8 Consensus size: 22
13527660 ACTACATATT
13527670 ACAAATTTGGACAGCACTTATAC
1 ACAAATTTGGACAGCA-TTATAC
* * *
13527693 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCAT-TATAC
* *
13527716 ACAAAATTT-AACAGCATTGATTC
1 AC-AAATTTGGACAGCATT-ATAC
* * * *
13527739 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCAT-TATAC
13527763 ACAAATTTGGACAGCACTTATAC
1 ACAAATTTGGACAGCA-TTATAC
* *
13527786 ACAAAATTT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCAT-TATAC
* *
13527809 ACAAAATTGGACAGCATTGATTC
1 ACAAATTTGGACAGCATT-ATAC
* * * *
13527832 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCAT-TATAC
13527856 ACAAATTTGGACAGCACTTATAC
1 ACAAATTTGGACAGCA-TTATAC
* * *
13527879 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCAT-TATAC
*
13527902 ACAAAATTGGACAGCATTTATTCAC
1 ACAAATTTGGACAGCA-TTA-T-AC
* * *
13527927 CCAAAATTAGG-CAGCATACATAC
1 AC-AAATTTGGACAGCAT-TATAC
*
13527950 ACAAATTTGGACAACATTTATAC
1 ACAAATTTGGACAGCA-TTATAC
* *
13527973 ACAAAATTT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCAT-TATAC
*
13527996 ATAAAATTT-GACAGCATT
1 A-CAAATTTGGACAGCATT
13528014 GATTTATCAA
Statistics
Matches: 244, Mismatches: 50, Indels: 55
0.70 0.14 0.16
Matches are distributed among these distances:
22 23 0.09
23 150 0.61
24 57 0.23
25 8 0.03
26 6 0.02
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (22 bp):
ACAAATTTGGACAGCATTATAC
Found at i:13527730 original size:46 final size:45
Alignment explanation
Indices: 13527672--13528011 Score: 296
Period size: 46 Copynumber: 7.3 Consensus size: 45
13527662 TACATATTAC
13527672 AAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACA
1 AAATTT-GACAGCACTTATACACAAAAT-TAACAGCATGTATATACA
* * ** **
13527719 AAATTTAACAGCA-TTGATTCACCAAAATTGGGCAGCATACATATAC-
1 AAATTTGACAGCACTT-ATACA-CAAAATT-AACAGCATGTATATACA
13527765 AAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACA
1 AAATTT-GACAGCACTTATACACAAAA-TTAACAGCATGTATATACA
* * ** **
13527812 AAATTGGACAGCA-TTGATTCACCAAAATTGGGCAGCATACATATAC-
1 AAATTTGACAGCACTT-ATACA-CAAAATT-AACAGCATGTATATACA
13527858 AAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACA
1 AAATTT-GACAGCACTTATACACAAAAT-TAACAGCATGTATATACA
* * * * *
13527905 AAATTGGACAGCATTTATTCACCCAAAATTAGGCAGCA--TACATACA
1 AAATTTGACAGCACTTA-T-ACACAAAATTA-ACAGCATGTATATACA
* * *
13527951 CAAATTTGGACAACATTTATACACAAAATTTAACAGCATGTATATATA
1 -AAATTT-GACAGCACTTATACACAAAA-TTAACAGCATGTATATACA
13527999 AAATTTGACAGCA
1 AAATTTGACAGCA
13528012 TTGATTTATC
Statistics
Matches: 235, Mismatches: 36, Indels: 45
0.74 0.11 0.14
Matches are distributed among these distances:
45 4 0.02
46 105 0.45
47 93 0.40
48 33 0.14
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (45 bp):
AAATTTGACAGCACTTATACACAAAATTAACAGCATGTATATACA
Found at i:13527773 original size:93 final size:93
Alignment explanation
Indices: 13527662--13528043 Score: 629
Period size: 93 Copynumber: 4.1 Consensus size: 93
13527652 CTAAATATAC
**
13527662 TACATATTACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTAA
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGA
13527727 CAGCATTGATTCACCAAAATTGGGCAGCA
65 CAGCATTGATTCACCAAAATTGGGCAGCA
*
13527756 TACATATACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
13527821 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
13527849 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
13527914 AGCATTTATTCACCCAAAATTAGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * * * *
13527943 TACATACACAAATTTGGACAACATTTATACACAAAATTTAACAGCATGTATATATAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
13528008 AGCATTGATTTATCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
13528036 TACATATA
1 TACATATA
13528044 ACAATTGGGC
Statistics
Matches: 270, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
93 180 0.67
94 90 0.33
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (93 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
AGCATTGATTCACCAAAATTGGGCAGCA
Found at i:13527978 original size:187 final size:186
Alignment explanation
Indices: 13527662--13528043 Score: 647
Period size: 187 Copynumber: 2.0 Consensus size: 186
13527652 CTAAATATAC
*
13527662 TACATATTACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTAA
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGAA
* * *
13527727 CAGCATTGATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAA
65 CAGCATTGATTCACCAAAATTAGGCAGCATACATACACAAATTTGGACAACACTTATACACAAAA
13527792 TTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCA
130 TTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCA
*
13527849 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGAAC
* *
13527914 AGCATTTATTCACCCAAAATTAGGCAGCATACATACACAAATTTGGACAACATTTATACACAAAA
66 AGCATTGATTCA-CCAAAATTAGGCAGCATACATACACAAATTTGGACAACACTTATACACAAAA
* * * *
13527979 TTTAACAGCATGTATATATAAAATTTGACAGCATTGATTTATCAAAATTGGGCAGCA
130 TTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCA
13528036 TACATATA
1 TACATATA
13528044 ACAATTGGGC
Statistics
Matches: 183, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
186 68 0.37
187 115 0.63
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (186 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGAAC
AGCATTGATTCACCAAAATTAGGCAGCATACATACACAAATTTGGACAACACTTATACACAAAAT
TTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCA
Found at i:13528814 original size:28 final size:28
Alignment explanation
Indices: 13528782--13528908 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
13528772 ATTTAATAAG
* * *
13528782 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
13528810 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
13528838 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
13528866 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
13528894 TTCGCACACTTAGTG
1 CTCGCACACTTAGTG
13528909 TCGAAAATCA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:13541597 original size:44 final size:43
Alignment explanation
Indices: 13541459--13542044 Score: 277
Period size: 44 Copynumber: 13.5 Consensus size: 43
13541449 CCGATAATCC
* * * **
13541459 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATC-AAG-TCT
* * * * *
13541503 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATCAAGTCT
13541543 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AATCAAGTCT
* *
13541587 TATC-CTCCTGAAGTTGCAATGGGGGCAGACTGAAG-ATGGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGT-GGAGCAGACT-AAGAAT--CAAGTCT
* * *
13541633 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT-AA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG--AATCAAGTCT
* * * *
13541677 TATCTCCCTGAAGTTGTAGTGGAGC-GAATTTA-AACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAATCA-AG-TCT
* * * * *
13541721 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCA-CATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATCAAGTCT
* * *
13541761 TATCTCCCTGAAGATGCAGTGGAGCAGACTAAGCAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AATCAAGTCT
* * *
13541805 TATC-CTCCTAAAGTTGCAGT-GAGGCAGACTAA-AGATGGAAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAGA-AT--CAAGTCT
* * * * * *
13541850 TGTCTCTCTGAAGTTGCAATGGAGCAGATTAAAGCCGA-CAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG--AATCAAGTCT
* * * *
13541894 TATCTCCCTGAAGTTGCAATAGA-CTGGATTAA-AACCTC-AGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGC-AGACTAAGAA--TCAAG-TCT
* * * * *
13541938 TATCTCTCTGAAGTTGCAGAGG-GCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATCAAGTCT
* * * *
13541978 TATTTCTCTGAAGTTGCAGTGGAGTAGACTGAAGAACGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAA-TCAAGTCT
*
13542023 TATC-CCCTTGAAATTGCAGTGG
1 TATCTCCC-TGAAGTTGCAGTGG
13542045 GGGTAGACTA
Statistics
Matches: 416, Mismatches: 76, Indels: 99
0.70 0.13 0.17
Matches are distributed among these distances:
40 68 0.16
41 25 0.06
42 16 0.04
43 25 0.06
44 176 0.42
45 70 0.17
46 32 0.08
47 1 0.00
48 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAATCAAGTCT
Found at i:13541600 original size:84 final size:88
Alignment explanation
Indices: 13541459--13542007 Score: 272
Period size: 84 Copynumber: 6.3 Consensus size: 88
13541449 CCGATAATCC
* * **
13541459 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC-A-G
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAATG
*
13541522 AGAGCAGA-TCG-CAT-CTAGTCT
66 AGAGCAGACT-GACATGCAAGTCT
*
13541543 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATC-AAG-TCTTATC-CTCCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AACCTAAGATCTTATCTCT-CTGAAGTTGCA
* * *
13541605 ATGGGGGCAGACTGAAGATGGCAAGTCT
63 ATGAGAGCAGACTG-ACAT-GCAAGTCT
* * * * * * *
13541633 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA-ATCCTATCTCCCTGAAGTTGTAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCTA-AGATCTTATCTCTCTGAAGTTGCAAT
* * **
13541697 G-GAGC-GAATTTA-AACCACAGATCT
65 GAGAGCAG-ACTGACATGCA-AG-TCT
* * * * * * * *
13541721 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCACATCT-AG-TCTTATCTCCCTGAAGATGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAATG
* * *
13541782 -GAGCAGACTAAGCAAGCAGGTCT
66 AGAGCAGACTGA-CATGCAAGTCT
* *** * *
13541805 TATC-CTCCTAAAGTTGCAGT-GAGGCAGACTAAAGATGGAAAATCTTGTCTCTCTGAAGTTGCA
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAA-ACCTAAGATCTTATCTCTCTGAAGTTGCA
* * * *
13541868 ATG-GAGCAGA-TTA-AAGCCGACAATCC
63 ATGAGAGCAGACTGACATG-C-A-AGTCT
* * * * *
13541894 TATCTCCCTGAAGTTGCAATAGA-CTGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGC-A-
1 TATCTCCCTGAAGTTGCAGTGGAGC-AGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAAT
* *
13541956 GAGGGCAGA-TCG-CAT-CTAGTCT
65 GAGAGCAGACT-GACATGCAAGTCT
* * *
13541978 TATTTCTCTGAAGTTGCAGTGGAGTAGACT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT
13542008 GAAGAACGCA
Statistics
Matches: 354, Mismatches: 73, Indels: 76
0.70 0.15 0.15
Matches are distributed among these distances:
83 3 0.01
84 121 0.34
85 9 0.03
86 27 0.08
87 22 0.06
88 55 0.16
89 57 0.16
90 59 0.17
91 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (88 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAATG
AGAGCAGACTGACATGCAAGTCT
Found at i:13541966 original size:217 final size:216
Alignment explanation
Indices: 13541445--13542043 Score: 871
Period size: 218 Copynumber: 2.8 Consensus size: 216
13541435 CAAACAGAAG
**
13541445 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCT
13541510 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
* * * * * * *
13541575 GTAATCAAGTCTTATCCTCCTGAAGTTGCAATGGGGGCAGACTGAAGATGGCAAGTCTTATCTCC
131 G-AAGCAAGTCTTATCCTCCTAAAGTTGCAGT-GAGGCAGACTAAAGATGGAAAATCTTATCTCC
*
13541640 CTGAAGTTGCAGTGGAGCAGATT
194 CTGAAGTTGCAATGGAGCAGATT
* * * *
13541663 AAAGCCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGAATTTAAACCACAGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCT
* *
13541728 CTGAAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGATGCAGTGGAGCAGACTAA
66 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
* * *
13541793 GCAAGCAGGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTAAAGATGGAAAATCTTGTCTCTC
131 G-AAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTAAAGATGGAAAATCTTATCTCCC
13541858 TGAAGTTGCAATGGAGCAGATT
195 TGAAGTTGCAATGGAGCAGATT
* * *
13541880 AAAGCCGACAATCCTATCTCCCTGAAGTTGCAATAGA-CTGGATTAAAACCTCAGATCTTATCTC
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAAACCTCAGATCTTATCTC
* * * *
13541944 TCTGAAGTTGCAGAGGGCAGATCGCATCTAGTCTTATTTCTCTGAAGTTGCAGTGGAGTAGACTG
65 TCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-
13542009 AAGAACGCAAGTCTTATCC-CCTTGAAA-TTGCAGTG
129 AAGAA-GCAAGTCTTATCCTCC-T-AAAGTTGCAGTG
13542044 GGGGTAGACT
Statistics
Matches: 342, Mismatches: 34, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
216 1 0.00
217 165 0.48
218 173 0.51
219 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (216 bp):
AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCT
CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
GAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTAAAGATGGAAAATCTTATCTCCCT
GAAGTTGCAATGGAGCAGATT
Found at i:13542069 original size:45 final size:45
Alignment explanation
Indices: 13541986--13542071 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
13541976 CTTATTTCTC
* * *
13541986 TGAAGTTGCAGTGGAGTAGACTGAAGAACGCAAGTCTTATCCCCT
1 TGAAATTGCAGTGGAGTAGACTAAACAACGCAAGTCTTATCCCCT
*
13542031 TGAAATTGCAGTGGGGGTAGACTAAACATAC-CAA-TCTTATC
1 TGAAATTGCAGT-GGAGTAGACTAAACA-ACGCAAGTCTTATC
13542072 TCCCCAACGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
45 18 0.51
46 15 0.43
47 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (45 bp):
TGAAATTGCAGTGGAGTAGACTAAACAACGCAAGTCTTATCCCCT
Found at i:13543234 original size:12 final size:12
Alignment explanation
Indices: 13543219--13543249 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13543209 GTTTTTTTTA
13543219 TGTTTTTAAATT
1 TGTTTTTAAATT
13543231 TGTTTTTAAATT
1 TGTTTTTAAATT
*
13543243 TATTTTT
1 TGTTTTT
13543250 CATTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (12 bp):
TGTTTTTAAATT
Found at i:13544196 original size:97 final size:98
Alignment explanation
Indices: 13544057--13544252 Score: 333
Period size: 98 Copynumber: 2.0 Consensus size: 98
13544047 AAAAAAATAA
* ** *
13544057 TAAAGGAAATATTCCGAGTTTGGGGTTTTGAAGGAATTGTG-CCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGAATTTTGAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
13544121 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
13544154 TAAAGGAAATATTCCAAGTTTGGAATTTTAGAA-GAATCGTGCCCTAACGTATTGGGTGTGATTT
1 TAAAGGAAATATTCCAAGTTTGGAATTTT-GAAGGAATCGTGCCCTAACGTATTGGGTGTGATTT
13544218 CTTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
65 CTTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
13544252 T
1 T
13544253 TTTATTACAC
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
97 33 0.35
98 60 0.65
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGGAATTTTGAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:13544832 original size:140 final size:137
Alignment explanation
Indices: 13544650--13544914 Score: 306
Period size: 140 Copynumber: 1.9 Consensus size: 137
13544640 GGTTTTGACA
* * * * *
13544650 ACATCATTTAGTCTCGGATTTGATTCCTCTCCTACTTACA-TTTGTATGTTTTA-TTTCATGTTG
1 ACATCATTGAGTCTCAGATTTGATTCATCTACTACTTACATTTTGT-T-TTTTATTTTAATGTTG
** * * * *
13544713 CTTCAAGTTTTTTAAATTTTTAATTAATGTTTTTTAACATATT-AGTTCTTTTGTTAGATGGTTA
64 CTTCAAGCCTTTT---TTTTTAATTAA-CTTTCTTAACATATTAACTCCTTTTGTTAGATGGTTA
13544777 AATAGTTGCAATT
125 AATAGTTGCAATT
13544790 ACATCATTGAGTCTCA-AGTTTGATTCATCTACTA-TTCACATTTTGTTTTTTATTTTTAATGTT
1 ACATCATTGAGTCTCAGA-TTTGATTCATCTACTACTT-ACATTTTGTTTTTTA-TTTTAATGTT
*
13544853 GCTTCAAGCCTTTTTTTTTAATTAACTTTCTTAACATATTAACTCCTTTTGTTAGGTGGTTA
63 GCTTCAAGCCTTTTTTTTTAATTAACTTTCTTAACATATTAACTCCTTTTGTTAGATGGTTA
13544915 GATAATTATG
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
137 13 0.12
138 29 0.27
139 8 0.07
140 32 0.30
141 25 0.23
ACGTcount: A:0.24, C:0.14, G:0.11, T:0.51
Consensus pattern (137 bp):
ACATCATTGAGTCTCAGATTTGATTCATCTACTACTTACATTTTGTTTTTTATTTTAATGTTGCT
TCAAGCCTTTTTTTTTAATTAACTTTCTTAACATATTAACTCCTTTTGTTAGATGGTTAAATAGT
TGCAATT
Found at i:13545046 original size:22 final size:22
Alignment explanation
Indices: 13545020--13545065 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
13545010 TGATTTTTAT
*
13545020 AAATAAAAGAGTTAAAAATAAA
1 AAATAAAAGAATTAAAAATAAA
* **
13545042 AAATACATTAATTAAAAATAAA
1 AAATAAAAGAATTAAAAATAAA
13545064 AA
1 AA
13545066 TAATTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (22 bp):
AAATAAAAGAATTAAAAATAAA
Found at i:13548716 original size:20 final size:20
Alignment explanation
Indices: 13548675--13548712 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13548665 AATCGTAAAT
*
13548675 TGAGCCCAAGAGCCCAAAAC
1 TGAGACCAAGAGCCCAAAAC
13548695 TGAGACCAAGA-CCCAAAA
1 TGAGACCAAGAGCCCAAAA
13548713 ACTGGTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.45, C:0.32, G:0.18, T:0.05
Consensus pattern (20 bp):
TGAGACCAAGAGCCCAAAAC
Found at i:13549739 original size:24 final size:24
Alignment explanation
Indices: 13549707--13549757 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
13549697 GCGAGGAAGG
13549707 ATTAACATCCTCGTCATACTCAAA
1 ATTAACATCCTCGTCATACTCAAA
13549731 ATTAACATCCTCGTCATACTCAAA
1 ATTAACATCCTCGTCATACTCAAA
13549755 ATT
1 ATT
13549758 GGTACCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (24 bp):
ATTAACATCCTCGTCATACTCAAA
Found at i:13564572 original size:14 final size:15
Alignment explanation
Indices: 13564536--13564571 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
13564526 ATTTAAATAT
13564536 TTTTTTAAAAATAAA
1 TTTTTTAAAAATAAA
*
13564551 TTATTTTAAATATAAA
1 TT-TTTTAAAAATAAA
13564567 TTTTT
1 TTTTT
13564572 ATCATTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTTTAAAAATAAA
Found at i:13567564 original size:5 final size:5
Alignment explanation
Indices: 13567548--13567586 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
13567538 TATATATATA
* * *
13567548 TGAAT TGGAT TGAAT TGAAT TGAAT TGAAA TGAAA TGAA
1 TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAA
13567587 ATAAGTGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (5 bp):
TGAAT
Found at i:13573139 original size:8 final size:8
Alignment explanation
Indices: 13573126--13573156 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
13573116 CTTGTTTTAT
13573126 TATAATAA
1 TATAATAA
*
13573134 TATAATAT
1 TATAATAA
13573142 TATAATAA
1 TATAATAA
13573150 TATAATA
1 TATAATA
13573157 TAACAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TATAATAA
Found at i:13573142 original size:16 final size:16
Alignment explanation
Indices: 13573123--13573157 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13573113 TTTCTTGTTT
13573123 TATTATAATAATATAA
1 TATTATAATAATATAA
13573139 TATTATAATAATATAA
1 TATTATAATAATATAA
13573155 TAT
1 TAT
13573158 AACAATATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TATTATAATAATATAA
Found at i:13573158 original size:13 final size:15
Alignment explanation
Indices: 13573123--13573166 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 15
13573113 TTTCTTGTTT
13573123 TATTATAATAATATAA
1 TATTATAATAATAT-A
13573139 TATTATAATAATATA
1 TATTATAATAATATA
*
13573154 -A-TATAACAATATA
1 TATTATAATAATATA
13573167 CTTATTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.41
14 1 0.04
15 1 0.04
16 14 0.52
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
TATTATAATAATATA
Found at i:13580529 original size:192 final size:192
Alignment explanation
Indices: 13580193--13580573 Score: 683
Period size: 192 Copynumber: 2.0 Consensus size: 192
13580183 CAAACTGATG
13580193 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
* *
13580258 ACTTGTTCAGAAGTTTTTTGTTTTAATCAAACTCAGTGCATGTTTTGAAAGAATAAAAATTGGCA
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
* * *
13580323 AAACGCTTATAGATGTTTAGCAAGACTAAAGTTAGAAAACACTTATTTAAAACCCAGAAGTT
131 AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
13580385 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
1 ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
13580450 ACTTGTTCAGAAG-CTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAAATTGGC
66 ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAAT-AAAAATTGGC
* *
13580514 AAAACTCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACATTTATTTAAAACCCAGAA
130 AAAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAA
13580574 TTTGAATTCA
Statistics
Matches: 181, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
191 38 0.21
192 143 0.79
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (192 bp):
ATAAGTGGTGTAACACCCCCAAACCTAGCCCAGAAGTTATAACTAGATATTGAGGAATTACATCA
ACTTGTTCAGAAGTCTTTTGTTTTAATCAAACTCAGTGCATGCTTTGAAAGAATAAAAATTGGCA
AAACGCTCATAGATGTTTAGCAAAACTAAAGTCAGAAAACACTTATTTAAAACCCAGAAGTT
Found at i:13581310 original size:59 final size:59
Alignment explanation
Indices: 13581218--13581332 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 59
13581208 AATTGTGGAC
* *
13581218 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATGTGGTCAAGCCACTAT
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
*
13581277 ATTGCCACCAGAATTGCAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
1 ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCAC
13581333 CAGATAGTGC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (59 bp):
ATTGCCACCAGAATTACAATTAAAACTGTCATATAAGATATATATGGTCAAACCACTAT
Found at i:13593285 original size:220 final size:220
Alignment explanation
Indices: 13592903--13593564 Score: 1315
Period size: 220 Copynumber: 3.0 Consensus size: 220
13592893 TGAAATAGGA
13592903 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
1 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
13592968 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
66 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
13593033 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
131 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
13593098 TTCTTTCTTTTTTTATTTTCGTAAT
196 TTCTTTCTTTTTTTATTTTCGTAAT
13593123 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
1 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
13593188 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
66 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
13593253 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
131 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
13593318 TTCTTTCTTTTTTTATTTTCGTAAT
196 TTCTTTCTTTTTTTATTTTCGTAAT
13593343 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
1 GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
*
13593408 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTAATCA
66 TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
13593473 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
131 AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
13593538 TTCTTTCTTTTTTTATTTTCGTAAT
196 TTCTTTCTTTTTTTATTTTCGTAAT
13593563 GT
1 GT
13593565 TGCGCGTTTT
Statistics
Matches: 441, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
220 441 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (220 bp):
GTCATACTCAACATCCAACCATCAAGTAATGTTAGTTGGTGAAGGGGATTTCTCTTTTTCTGAGT
TTGGCCAATGCTTTTGCCTCTGCCTCTAACATTTGTCCTTCTTCCTTAGACTCCTATGGTGATCA
AACACAAAAGAAACAACCCTTTTCTCTATAAAATGTTTTATTGCTTTAGCTATTTACACCAAAGT
TTCTTTCTTTTTTTATTTTCGTAAT
Found at i:13595281 original size:96 final size:89
Alignment explanation
Indices: 13595112--13595367 Score: 297
Period size: 84 Copynumber: 2.9 Consensus size: 89
13595102 CTAGGAAGTT
* * * **
13595112 TGAGGCATGGTCTTGACAGACAATTGGTAGAGGTGCCAAGAACCTTGAATGGTAACTTGCCTTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
13595177 ATGCATGAGCACAAGCATGGGCATGAACAAG
66 ATGCATGAG--C-AG-A---GCATGAACAAG
* * * *
13595208 TGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
*
13595273 ATG--T-A--TGAGCATGAACAAG
66 ATGCATGAGCAGAGCATGAACAAG
* * *
13595292 CGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTAC
1 TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
13595357 ATGCATGAGCA
66 ATGCATGAGCA
13595368 TGAAAATAGT
Statistics
Matches: 138, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
84 72 0.52
86 1 0.01
87 2 0.01
88 1 0.01
93 1 0.01
94 1 0.01
96 60 0.43
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (89 bp):
TGAGGCATAGTCTTGACAGACAAATGGTAGAGGTGCCAAGAACCTTAAATGGTAACTTGTATTAC
ATGCATGAGCAGAGCATGAACAAG
Found at i:13595348 original size:84 final size:83
Alignment explanation
Indices: 13595191--13595528 Score: 381
Period size: 84 Copynumber: 4.1 Consensus size: 83
13595181 ATGAGCACAA
* * * * * *
13595191 GCATGGGCATGAACAAGTGAGGCATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAA
1 GCATGAGCATGAACAA-CGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
13595256 ATGATAACTTGTATTACAT
65 ATGATAACTTGTATTACAT
* * * *
13595275 GTATGAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTAC
1 GCATGAGCATGAACAA-CGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
13595340 ATGGTAACTTGTATTACAT
65 ATGATAACTTGTATTACAT
* *
13595359 GCATGAGCATG---AA--A---ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAA
1 GCATGAGCATGAACAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
* *
13595416 TGGTAACTCGTATTACAT
66 TGATAACTTGTATTACAT
* * * * *
13595434 GCATTAGCA-CAAGCCAACGAGGCATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTG
1 GCATGAGCATGAA--CAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTA
*
13595498 AATGATAACTTGTACTACAT
64 AATGATAACTTGTATTACAT
13595518 -CATGAGCATGA
1 GCATGAGCATGA
13595529 GCATGAACTT
Statistics
Matches: 217, Mismatches: 26, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
75 63 0.29
78 1 0.00
79 2 0.01
81 3 0.01
83 7 0.03
84 141 0.65
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (83 bp):
GCATGAGCATGAACAACGAGGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
TGATAACTTGTATTACAT
Found at i:13595398 original size:75 final size:76
Alignment explanation
Indices: 13595298--13595528 Score: 261
Period size: 75 Copynumber: 2.9 Consensus size: 76
13595288 CAAGCGAGGC
* * *
13595298 ATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTA-ATGGTAACTTGTATTACATGCAT
13595363 GAGCATGAA-A-
65 GAGCATGAACAG
* *
13595373 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATGCAT
* *
13595438 TAGCACAAGCCAACGAGG
65 GAG--CATG--AAC-A-G
* * *
13595456 CATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGAATGATAACTTGTACTACAT-CA
1 -ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTT-AATGGTAACTTGTATTACATGCA
13595520 TGAGCATGA
64 TGAGCATGA
13595529 GCATGAACTT
Statistics
Matches: 131, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
75 60 0.46
76 1 0.01
77 3 0.02
79 3 0.02
81 4 0.03
83 5 0.04
84 55 0.42
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (76 bp):
ATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTAATGGTAACTTGTATTACATGCATG
AGCATGAACAG
Found at i:13595507 original size:159 final size:158
Alignment explanation
Indices: 13595214--13595528 Score: 420
Period size: 159 Copynumber: 2.0 Consensus size: 158
13595204 CAAGTGAGGC
* * * * * *
13595214 ATAGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTACATGTAT
1 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
* * *
13595279 GAGCATGAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGG
66 GAGCATCAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGA
*
13595344 TAACTTGTATTACATGCATGAGCATGAAA
131 TAACTTGTACTACAT-CATGAGCATGAAA
* * *
13595373 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAGCCTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
* * * *
13595438 TAGCA-CAAGCCAA-CGAGGCATAGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGA-A
66 GAGCATCAA--CAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTT-ACA
13595500 TGATAACTTGTACTACATCATGAGCATGA
128 TGATAACTTGTACTACATCATGAGCATGA
13595529 GCATGAACTT
Statistics
Matches: 136, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
158 13 0.10
159 119 0.88
160 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (158 bp):
ATAGTCTTGACAGACAAATGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCAT
GAGCATCAACAAGCGAGGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGA
TAACTTGTACTACATCATGAGCATGAAA
Found at i:13596189 original size:24 final size:22
Alignment explanation
Indices: 13596141--13596189 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
13596131 ATTGGTTAAA
*
13596141 ATTATTTTAAAATTGCTTTTTT
1 ATTATTTTAAAAATGCTTTTTT
*
13596163 ATTATTTTAATATAATGTTTTTTT
1 ATTATTTTAA-A-AATGCTTTTTT
13596187 ATT
1 ATT
13596190 TAATTAATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 1 0.04
24 12 0.52
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (22 bp):
ATTATTTTAAAAATGCTTTTTT
Found at i:13596193 original size:20 final size:21
Alignment explanation
Indices: 13596158--13596198 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
13596148 TAAAATTGCT
13596158 TTTTTATTATTTTAATATAATG
1 TTTTTATTATTTTAAT-TAATG
13596180 TTTTT-TTA-TTTAATTAATG
1 TTTTTATTATTTTAATTAATG
13596199 GTTAAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 3 0.16
22 5 0.26
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTTTATTATTTTAATTAATG
Found at i:13596551 original size:78 final size:78
Alignment explanation
Indices: 13596456--13596608 Score: 288
Period size: 78 Copynumber: 2.0 Consensus size: 78
13596446 ATCAAGCTAA
*
13596456 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCGCTAAACATCAAGTA
1 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
13596521 AAGCAAAGCATGC
66 AAGCAAAGCATGC
*
13596534 AACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
1 AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
13596599 AAGCAAAGCA
66 AAGCAAAGCA
13596609 ACCAAAGATA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (78 bp):
AACTTGATTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAACATCAAGTA
AAGCAAAGCATGC
Found at i:13597031 original size:84 final size:82
Alignment explanation
Indices: 13596889--13597223 Score: 387
Period size: 84 Copynumber: 4.1 Consensus size: 82
13596879 TCATGCTCAC
* * * *
13596889 GCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCTTGGCATCTCTACCATTTGTCTGTCAACA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
13596954 CTATGCCTCGCTGGCTTGT
66 CTATGCCTCGCT-G-TTAT
* * * * *
13596973 GCTCATGCATGTAATACGAGTTACCATTTAAGGTTCTTGGCATCTCTATCATTCGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
13597038 CTAT---T---T-TCAT
66 CTATGCCTCGCTGTTAT
* *
13597048 GCTCATGCATGTAATACAAGTTACCATGTAAGGCTCTTGGCACCTCTACCTTTTGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
13597113 CTATGCCTCGCTTGTTCAT
66 CTATGCCTCGC-TGTT-AT
* * * * * *
13597132 GCTCATACATGTAATACAAGTTATCATTTATGGTTCTTGGCACCCCTACCACTTGTCTGTCAAGA
1 GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
*
13597197 CTATGCCTCACTTGTTCAT
66 CTATGCCTCGC-TGTT-AT
13597216 GCTCATGC
1 GCTCATGC
13597224 TTGTGCTCAT
Statistics
Matches: 215, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
75 64 0.30
78 2 0.01
81 1 0.00
82 1 0.00
83 1 0.00
84 146 0.68
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (82 bp):
GCTCATGCATGTAATACAAGTTACCATTTAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAGA
CTATGCCTCGCTGTTAT
Found at i:13597190 original size:159 final size:159
Alignment explanation
Indices: 13596889--13597200 Score: 459
Period size: 159 Copynumber: 2.0 Consensus size: 159
13596879 TCATGCTCAC
* *
13596889 GCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCTTGGCATCTCTACCATTTGTCTGTCAACA
1 GCTCATGCATGTAATACAAGTTACCATTCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAACA
* * * * *
13596954 CTATGCCTCGCTGGCTTGTGCTCATGCATGTAATACGAGTTACCATTTAAGGTTCTTGGCATCTC
66 CTATGCCTCGCTGGCTTATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACCCC
*
13597019 TATCATTCGTCTGTCAAGACTATTTTCAT
131 TACCATTCGTCTGTCAAGACTATTTTCAT
* *
13597048 GCTCATGCATGTAATACAAGTTACCATGT-AAGGCTCTTGGCACCTCTACCTTTTGTCTGTCAAG
1 GCTCATGCATGTAATACAAGTTACCAT-TCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAAC
* * *
13597112 ACTATGCCTCGCTTG-TTCATGCTCATACATGTAATACAAGTTATCATTTATGGTTCTTGGCACC
65 ACTATGCCTCGCTGGCTT-ATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACC
13597176 CCTACCACTT-GTCTGTCAAGACTAT
129 CCTACCA-TTCGTCTGTCAAGACTAT
13597201 GCCTCACTTG
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
158 2 0.01
159 132 0.96
160 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (159 bp):
GCTCATGCATGTAATACAAGTTACCATTCAAGGCTCTTGGCACCTCTACCATTTGTCTGTCAACA
CTATGCCTCGCTGGCTTATGCTCATACATGTAATACAAGTTACCATTTAAGGTTCTTGGCACCCC
TACCATTCGTCTGTCAAGACTATTTTCAT
Found at i:13601000 original size:3 final size:3
Alignment explanation
Indices: 13600992--13601028 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
13600982 GTAGACGAGG
13600992 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13601029 AAAAGCGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:13609778 original size:14 final size:14
Alignment explanation
Indices: 13609759--13609786 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13609749 CCAATTTATT
13609759 AATGAATTATTAAA
1 AATGAATTATTAAA
13609773 AATGAATTATTAAA
1 AATGAATTATTAAA
13609787 TATAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:13626261 original size:75 final size:76
Alignment explanation
Indices: 13625762--13626842 Score: 1341
Period size: 76 Copynumber: 14.2 Consensus size: 76
13625752 ACAATTCCTT
* * * * * *
13625762 TTTCTATTTTTTAAAAATCAATTCATAATCCGAGAGATGAGTTGAGCCTCGAGTCGCACGCCGGG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13625827 GTATTTTTCAA
66 GTATTTTTCAA
* * * * * * *
13625838 TTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGGTCGCGCGCTGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13625903 GTATTTTTCAA
66 GTATTTTTCAA
*
13625914 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
13625979 ATATTTTTCAA
66 GTATTTTTCAA
* ** **
13625990 TTTCTGTTTTTCAAAAATTCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGGTCACACGTTGA
1 TTTCTATTTTTCAAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
13626055 GGTATTCTTCAA
65 GGTATTTTTCAA
* ** * * *
13626067 TTTTTATTTTAAAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCACAGGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
*
13626132 GTATTTTTCCA
66 GTATTTTTCAA
* * * *
13626143 TTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTCGAGTCACACACCGA
1 TTTCTATTTTTC-AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
13626208 GGTA-TTTTCAA
65 GGTATTTTTCAA
* * * *
13626219 TTTTTATTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13626284 GTATTTTT-AA
66 GTATTTTTCAA
* * *
13626294 TTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13626359 GTA-TTTTCAA
66 GTATTTTTCAA
* * * *
13626369 TTTATGTTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGTTGAGCCTCGGGTCACACGCCCA
1 TTTCT-ATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
*
13626434 GGAATTTTTCAA
65 GGTATTTTTCAA
* * * *
13626446 TTTCTATTTTTTTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTAAGCCTTGGGTCACATG
1 TTTCTA-----TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACG
* *
13626511 TCGAGATATTTTTCAA
61 CCGAGGTATTTTTCAA
* * * * ** *
13626527 TTTCTGTTTTCCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCCTCAAGT-AGCACGCTGA
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCA-CACGCCGA
13626591 GGTATTTTT-AA
65 GGTATTTTTCAA
* * *
13626602 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGTCACACGTCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13626667 GTATTTTTCAA
66 GTATTTTTCAA
* * *** *
13626678 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGTCGTGCGCTGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
13626743 GTA-TTTTCAA
66 GTATTTTTCAA
** * * ***
13626753 TTTCTATTTTTCAAGGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGAGTTGTACGCCGAG
1 TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
* *
13626818 CTA-TTTCCAA
66 GTATTTTTCAA
13626828 TTT-TCATTTTTCAAA
1 TTTCT-ATTTTTCAAA
13626843 TAAAAAATAA
Statistics
Matches: 877, Mismatches: 113, Indels: 31
0.86 0.11 0.03
Matches are distributed among these distances:
74 5 0.01
75 270 0.31
76 410 0.47
77 126 0.14
81 66 0.08
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (76 bp):
TTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
GTATTTTTCAA
Found at i:13626803 original size:151 final size:152
Alignment explanation
Indices: 13625762--13626799 Score: 1359
Period size: 151 Copynumber: 6.8 Consensus size: 152
13625752 ACAATTCCTT
* * * * * *
13625762 TTTCTATTTTTTAAAAATCAATTCATAATCCGAGAGATGAGTTGAGCCTCGAGTCGCACGCCGGG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
* * * *
13625827 GTATTTTTCAATTTCTATTTTTTAAAAATCAACTCATAATCTGATAGATGAGTTGAGCCTCGGGT
66 GTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
* *
13625892 CGCGCG-CTGAGGTATTTTTCAA
131 CACACGTC-GAGGTATTTTTCAA
*
13625914 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
* * **
13625979 ATATTTTTCAATTTCTGTTTTTCAAAAATTCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGG
66 GTATTTTTCAATTTCTATTTTTCAAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGG
* *
13626044 TCACACGTTGAGGTATTCTTCAA
130 TCACACGTCGAGGTATTTTTCAA
* * ** * * * *
13626067 TTTTTATTTTAAAAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCACAGGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
* * * *
13626132 GTATTTTTCCATTTCTATTTTTCAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTCGAG
66 GTATTTTTCAATTTCTATTTTTC-AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGG
**
13626197 TCACACACCGAGGTA-TTTTCAA
130 TCACACGTCGAGGTATTTTTCAA
* * * *
13626219 TTTTTATTTTTCAAAAATCAACTCATAGTTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
* * *
13626284 GTATTTTT-AATTTATGTTTTTTAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
66 GTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
*
13626348 CACACGCCGAGGTA-TTTTCAA
131 CACACGTCGAGGTATTTTTCAA
* * * *
13626369 TTTATGTTTTTTCAAAAATCAACTCATAATCCGAGGGGTGAGTTGAGCCTCGGGTCACACGCCCA
1 TTTCTG-TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGA
* * *
13626434 GGAATTTTTCAATTTCTATTTTTTTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTAAGCC
65 GGTATTTTTCAATTTCTA-----TTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCC
* * *
13626499 TTGGGTCACATGTCGAGATATTTTTCAA
125 TCGGGTCACACGTCGAGGTATTTTTCAA
* * * ** * *
13626527 TTTCTGTTTTCCAAAAATCAAATCATAATCTGAGAGGTGAGTTGAGCCTCAAGTAGCACGCTGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
* *
13626592 GTATTTTT-AATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGT
66 GTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
13626656 CACACGTCGAGGTATTTTTCAA
131 CACACGTCGAGGTATTTTTCAA
* ** *
13626678 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGACTTGAGCCTCGGGTCGTGCGCTGAG
1 TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
**
13626743 GTA-TTTTCAATTTCTATTTTTCAAGGATCAACTCATAATCCGAGAGGTGAGTTGAGC
66 GTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGC
13626800 TTCGAGTTGT
Statistics
Matches: 776, Mismatches: 98, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
150 67 0.09
151 240 0.31
152 160 0.21
153 174 0.22
154 5 0.01
156 7 0.01
157 111 0.14
158 12 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (152 bp):
TTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAG
GTATTTTTCAATTTCTATTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGT
CACACGTCGAGGTATTTTTCAA
Found at i:13627177 original size:30 final size:29
Alignment explanation
Indices: 13627141--13627250 Score: 139
Period size: 30 Copynumber: 3.7 Consensus size: 29
13627131 ATAAAAAATT
13627141 TAAAATTATATTTTGACCCCTTAACTTTTC
1 TAAAATTATATTTTGACCCCTTAA-TTTTC
* * *
13627171 TAAAATTATATTTTAACCCATAAATTTTCC
1 TAAAATTATATTTTGACCCCTTAATTTT-C
*
13627201 TAAAATTATATTTTGACACCTTAATTTTC
1 TAAAATTATATTTTGACCCCTTAATTTTC
* *
13627230 ATAAAATTACATTTTGGCCCC
1 -TAAAATTATATTTTGACCCC
13627251 AGAAGTTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
29 5 0.07
30 63 0.93
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.44
Consensus pattern (29 bp):
TAAAATTATATTTTGACCCCTTAATTTTC
Found at i:13627752 original size:23 final size:23
Alignment explanation
Indices: 13627689--13627763 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
13627679 CTAGGGTTTG
*
13627689 AAAAGAAGAGGAAAAAGGAAA-GAA
1 AAAAGAAGAAGAAAAA--AAAGGAA
*
13627713 AGGAAGAAGAAGAAAAAAAAAGGAA
1 A-AAAGAAGAAG-AAAAAAAAGGAA
13627738 AAAAGAA-AAGAAAAAAAAGGAA
1 AAAAGAAGAAGAAAAAAAAGGAA
13627760 AAAA
1 AAAA
13627764 ATAAAAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
22 16 0.36
23 3 0.07
24 9 0.20
25 12 0.27
26 5 0.11
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAAGAAGAAGAAAAAAAAGGAA
Found at i:13627754 original size:22 final size:24
Alignment explanation
Indices: 13627689--13627763 Score: 84
Period size: 25 Copynumber: 3.2 Consensus size: 24
13627679 CTAGGGTTTG
* *
13627689 AAAAGAAGAGGAAAAAGGAAA-GAA
1 AAAAGAAGAAGAAAAA-AAAAGGAA
*
13627713 AGGAAGAAGAAGAAAAAAAAAGGAA
1 A-AAAGAAGAAGAAAAAAAAAGGAA
13627738 AAAAGAA-AAG-AAAAAAAAGGAA
1 AAAAGAAGAAGAAAAAAAAAGGAA
13627760 AAAA
1 AAAA
13627764 ATAAAAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
22 16 0.36
23 3 0.07
24 9 0.20
25 17 0.38
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (24 bp):
AAAAGAAGAAGAAAAAAAAAGGAA
Found at i:13628126 original size:15 final size:15
Alignment explanation
Indices: 13628105--13628140 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
13628095 CAGCAGCAGA
*
13628105 AAAAAAAAGAGAAAAG
1 AAAAAAAGGA-AAAAG
13628121 AAAAAAAGGAAAAAG
1 AAAAAAAGGAAAAAG
13628136 AAAAA
1 AAAAA
13628141 GAGCCCGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAGGAAAAAG
Found at i:13628313 original size:15 final size:15
Alignment explanation
Indices: 13628274--13628314 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
13628264 TTTAAATAGT
*
13628274 TTTTTTAATATTTTA
1 TTTTTTAATTTTTTA
**
13628289 TTTTACAATTTTTTA
1 TTTTTTAATTTTTTA
13628304 TTTTTTAATTT
1 TTTTTTAATTT
13628315 AAATAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTAATTTTTTA
Found at i:13631448 original size:84 final size:83
Alignment explanation
Indices: 13631304--13631641 Score: 345
Period size: 84 Copynumber: 4.1 Consensus size: 83
13631294 ATGAGCACAA
** * * * * * *
13631304 GCATGAGCATGAACGAGTGAGGCATGGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAA
1 GCATGAGCATGAAC-AGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
*
13631369 ATGATAACTTGTATTACAT
65 ATGGTAACTTGTATTACAT
* * * * *
13631388 GTATGAGCATGAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTAC
1 GCATGAGCATGAAC-AGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAA
13631453 ATGGTAACTTGTATTACAT
65 ATGGTAACTTGTATTACAT
* * *
13631472 GCATCAGCATG---A--AAA-C--AGTCTTGACAGACGAATGATAGAGATGCCAAGAACCTTAAA
1 GCATGAGCATGAACAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
*
13631529 TGGTAACTCGTATTACAT
66 TGGTAACTTGTATTACAT
* * * * * *
13631547 GCATGAGCA-CAAGCCAGCGAGGCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTG
1 GCATGAGCATGAA--CAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTA
*
13631610 AATGGTAACTTGTAGTACAT
64 AATGGTAACTTGTATTACAT
13631630 GCATGAGCATGA
1 GCATGAGCATGA
13631642 GCATGAACTT
Statistics
Matches: 209, Mismatches: 34, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
75 60 0.29
77 1 0.00
78 3 0.01
79 1 0.00
80 1 0.00
81 1 0.00
82 1 0.00
83 60 0.29
84 81 0.39
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (83 bp):
GCATGAGCATGAACAGCAAAGCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAA
TGGTAACTTGTATTACAT
Found at i:13631511 original size:75 final size:75
Alignment explanation
Indices: 13631413--13631641 Score: 217
Period size: 75 Copynumber: 2.9 Consensus size: 75
13631403 AGCAAAGCAT
* * * * *
13631413 AGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTACATGGTAACTTGTATTACATGCATCA
1 AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
13631478 GCATGAAAAC
66 GCATGAAAAC
* * *
13631488 AGTCTTGACAGACGAATGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATGA
1 AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
*
13631553 GCA-CAAGCCAGCGAGGC
66 GCATGAA---A---A--C
* * * * * * * *
13631570 ATGTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGAATGGTAACTTGTAGTACATGCATG
1 A-GTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATC
13631635 AGCATGA
65 AGCATGA
13631642 GCATGAACTT
Statistics
Matches: 127, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
74 2 0.02
75 60 0.47
77 1 0.01
80 1 0.01
82 2 0.02
83 60 0.47
84 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (75 bp):
AGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATCA
GCATGAAAAC
Found at i:13631639 original size:158 final size:159
Alignment explanation
Indices: 13631330--13631641 Score: 407
Period size: 159 Copynumber: 2.0 Consensus size: 159
13631320 GTGAGGCATG
* * * * *
13631330 GTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTACATGTATGAG
1 GTCTTGACAGACAAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGAG
* * *
13631395 CATGAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAGGAACCTTACATGGTAA
66 CATCAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGGTAA
*
13631460 CTTGTATTACATGCATCAGCATGAAAACA
131 CTTGTAGTACATGCATCAGCATGAAAACA
* *
13631489 GTCTTGACAGACGAA-TGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCATGA
1 GTCTTGACAGAC-AAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGA
* * * * * *
13631553 GCA-CAAGCCAGCGAGGCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGAGCCTTGA-ATGG
65 GCATCAA-CAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTT-ACATGG
*
13631615 TAACTTGTAGTACATGCATGAGCATGA
128 TAACTTGTAGTACATGCATCAGCATGA
13631642 GCATGAACTT
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
158 63 0.48
159 67 0.51
160 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (159 bp):
GTCTTGACAGACAAGTGATAGAGATGCCAAGAACCATAAATGATAACTCGTATTACATGCATGAG
CATCAACAAGCAAAGCATAGTCTTGACAGACAAAAGGTAGAGATGCCAAGAACCTTACATGGTAA
CTTGTAGTACATGCATCAGCATGAAAACA
Found at i:13632577 original size:78 final size:78
Alignment explanation
Indices: 13632448--13632608 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
13632438 GTATTCATGT
13632448 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
13632513 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
* *
13632526 AAGCATGCAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTGGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
13632591 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
13632604 AAGCA
1 AAGCA
13632609 ACCAAAGATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (78 bp):
AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
ATCAAGTAAAGCA
Found at i:13633029 original size:84 final size:84
Alignment explanation
Indices: 13632888--13633046 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
13632878 TTCATGCTCA
* * *
13632888 TGCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCCTGGCATCTCTACCATTTGTCTGTCAAC
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
*
13632953 ACTATGCCTCGCTGGCTTG
66 ACCATGCCTCGCTGGCTTG
* * * *
13632972 TGCTCATGCATGTAATACGAGTTACCATTCAAGGTTCTTGGCACCTCTACCAATTGTCTGTCAAG
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
13633037 ACCATGCCTC
66 ACCATGCCTC
13633047 AAGCTTCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (84 bp):
TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
ACCATGCCTCGCTGGCTTG
Found at i:13634960 original size:3 final size:3
Alignment explanation
Indices: 13634952--13634982 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
13634942 TTTGAACCTT
13634952 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
13634983 AACAAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:13637338 original size:31 final size:31
Alignment explanation
Indices: 13637273--13637909 Score: 402
Period size: 31 Copynumber: 21.2 Consensus size: 31
13637263 TTTGATTGTT
* * * *
13637273 TTATACATTGCCG-AATTAATTCGTATATAA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
13637303 TTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
13637334 TTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * * * *
13637365 AGATA-AGTTGCCG-AACTGATTCGTATATAA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
*
13637395 TTATACATTGCTGAAACTT-ATTTGTATATGG
1 TTATACATTGCTGAAA-TTGATTTGTATATGA
* *
13637426 TTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** *
13637457 AGATA-AGTTGC-CAAATTGATTTGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
13637487 TTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
13637518 TTACACATTGTTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
*
13637550 -TATA-AGTTGCCG-AATT-A-----AT-TCG-
1 TTATACA-TTGCTGAAATTGATTTGTATAT-GA
* *
13637572 -TATA--TTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
13637600 TTATACATT-ATCGAAATTGATTTGTCTATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
** * *
13637631 AGATA-AGTTGC-CAAATTGATTCGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * *
13637661 TTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACATTGCTGAAATTGATTTGTATATGA
* ** *
13637691 GTATACATTATTGAAATTGAATTGTATATGGA
1 TTATACATTGCTGAAATTGATTTGTATAT-GA
* *
13637723 -TATA-AGTTGCTG-AATTAATTCGTATATGA
1 TTATACA-TTGCTGAAATTGATTTGTATATGA
* * * *
13637752 TTATACATTGCCGAACTTGATTTATATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * *
13637783 TTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* * ** *
13637813 TTATACATTGCTGAACTTTATTCATATATGG
1 TTATACATTGCTGAAATTGATTTGTATATGA
*
13637844 TTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCTGAAATTGATTTGTATATGA
* *
13637874 TTATACATTG-TCGAATTTGATTCGTATATGA
1 TTATACATTGCT-GAAATTGATTTGTATATGA
*
13637905 ATATA
1 TTATA
13637910 TATATGGTTG
Statistics
Matches: 464, Mismatches: 102, Indels: 81
0.72 0.16 0.13
Matches are distributed among these distances:
20 5 0.01
21 4 0.01
22 5 0.01
23 2 0.00
24 2 0.00
27 3 0.01
28 1 0.00
29 7 0.02
30 185 0.40
31 248 0.53
32 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (31 bp):
TTATACATTGCTGAAATTGATTTGTATATGA
Found at i:13637341 original size:61 final size:61
Alignment explanation
Indices: 13637273--13637909 Score: 379
Period size: 61 Copynumber: 10.6 Consensus size: 61
13637263 TTTGATTGTT
* * * * *
13637273 TTATACATTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGG
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
** ** * * * * *
13637334 TTATACATTATCGAAATTGATTTGTATATGAAGATA-AGTTGCCG-AACTGATTCGTATATAA
1 TTATACATTGCCG-AATTGATTTGTATATGATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * *
13637395 TTATACATTGCTGAAACTT-ATTTGTATATGGTTATACATT-ATCGAAATTGATTTGCATATGA
1 TTATACATTGCCG-AA-TTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * *
13637457 AGATA-AGTTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGG
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* ** * * *
13637518 TTACACATTGTTGAAATTGAATTGTATATGGA-TATA-AGTTGCCG-AATTAATTCG--TAT-A
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * * * * *
13637576 -T-TGC--TG--AAATTTATTTGTATATGGTTATACATT-ATCGAAATTGATTTGTCTATGA
1 TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGA
** * * * *
13637631 AGATA-AGTTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATG-
1 TTATACA-TTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* *** * *
13637691 GTATACATTATTGAAATTGAATTGTATATGGA-TATA-AGTTGCTG-AATTAATTCGTATATGA
1 TTATACATTGCCG-AATTGATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGA
* * * *
13637752 TTATACATTGCCGAACTTGATTTATATATGGTTATACATTGC-CAAATTAATTCGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* * ** * * *
13637813 TTATACATTGCTGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
* * *
13637874 TTATACATTGTCGAATTTGATTCGTATATGAATATA
1 TTATACATTGCCGAA-TTGATTTGTATATGATTATA
13637910 TATATGGTTG
Statistics
Matches: 444, Mismatches: 95, Indels: 74
0.72 0.15 0.12
Matches are distributed among these distances:
50 1 0.00
51 20 0.05
52 9 0.02
54 5 0.01
55 1 0.00
56 1 0.00
57 2 0.00
59 5 0.01
60 25 0.06
61 298 0.67
62 75 0.17
63 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (61 bp):
TTATACATTGCCGAATTGATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGA
Found at i:13637377 original size:92 final size:92
Alignment explanation
Indices: 13637280--13637905 Score: 704
Period size: 92 Copynumber: 6.9 Consensus size: 92
13637270 GTTTTATACA
*
13637280 TTGCCGAATTAATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
13637345 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
13637372 TTGCCGAACTGATTCGTATATAATTATACATTGCTGAAACTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
13637437 CGAAATTGATTTGCATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * * *
13637464 TTGCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
13637529 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
13637556 TTGCCGAATTAATTC------G--TAT--ATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
13637611 CGAAATTGATTTGTCTATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * *
13637638 TTGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * *
13637702 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * * * *
13637729 TTGCTGAATTAATTCGTATATGATTATACATTGCCGAACTTGATTTATATATGGTTATACATT-G
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * * **
13637793 CCAAATTAATTCGTATATGATTATACA-
66 CGAAATTGATTTGTATATGAAGATA-AG
* * * * * * * *
13637820 TTGCTGAACTTTATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGATTATACATTG
1 TTGCCGAA-TTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTA
* *
13637884 TCGAATTTGATTCGTATATGAA
65 TCGAAATTGATTTGTATATGAA
13637906 TATATATATG
Statistics
Matches: 451, Mismatches: 69, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
82 67 0.15
84 3 0.01
86 1 0.00
88 1 0.00
90 3 0.01
91 127 0.28
92 249 0.55
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (92 bp):
TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:13637637 original size:82 final size:82
Alignment explanation
Indices: 13637494--13637749 Score: 307
Period size: 82 Copynumber: 3.0 Consensus size: 82
13637484 TGATTATACT
* *
13637494 TTGCTGAAATTAATTTGTATATGGTTACACATTGTTGAAATTGAATTGTATATGGATATAAGTTG
1 TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
13637559 CCGAATTAATTCGTATA
66 CCGAATTAATTCGTATA
* * * * * *
13637576 TTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTCTATGAAGATAAGTTG
1 TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
* *
13637641 CCAAATTGATTCGTATATGATTATA
66 CCGAATTAATTC------G--TATA
*
13637666 CTTTGATGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATTGTATATGGATATAAGT
1 --TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGT
*
13637730 TGCTGAATTAATTCGTATA
64 TGCCGAATTAATTCGTATA
13637749 T
1 T
13637750 GATTATACAT
Statistics
Matches: 144, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
81 1 0.01
82 67 0.47
83 4 0.03
85 1 0.01
88 1 0.01
90 4 0.03
91 44 0.31
92 22 0.15
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (82 bp):
TTGCTGAAATTAATTTGTATATGGTTATACATTATTGAAATTGAATTGTATATGGATATAAGTTG
CCGAATTAATTCGTATA
Found at i:13637691 original size:174 final size:173
Alignment explanation
Indices: 13637401--13637749 Score: 619
Period size: 174 Copynumber: 2.0 Consensus size: 173
13637391 ATAATTATAC
13637401 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
* * *
13637466 GCCAAATTGATTTGTATATGATTATACTTTGCTGAAATTAATTTGTATATGGTTACACATTGTTG
66 GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGG-TACACATTATTG
13637531 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
130 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
*
13637575 ATTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTC-TATGAAGATAAGT
1 ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTG-CATATGAAGATAAGT
*
13637639 TGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTATACATTATTG
65 TGCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTG
*
13637704 AAATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTAT
130 AAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
13637748 AT
1 AT
13637750 GATTATACAT
Statistics
Matches: 168, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
173 55 0.33
174 112 0.67
175 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (173 bp):
ATTGCTGAAACTTATTTGTATATGGTTATACATTATCGAAATTGATTTGCATATGAAGATAAGTT
GCCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTACACATTATTGA
AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTAT
Found at i:13637744 original size:91 final size:92
Alignment explanation
Indices: 13637575--13637909 Score: 360
Period size: 91 Copynumber: 3.7 Consensus size: 92
13637565 TAATTCGTAT
* * * *
13637575 ATTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTG-ATTTGTCTATGAAGATAAGT
1 ATTGC-GAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGT
** *
13637639 TGCCAAATTGATTCGTATATGATTATAC
65 TGCTGAATTAATTCGTATATGATTATAC
* * * * *
13637667 TTTGATGAAATTAATTTGTATATGG-TATACATTATTGAAATTGAATT-GTATATGGATATAAGT
1 ATTG-CGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGT
13637730 TGCTGAATTAATTCGTATATGATTATAC
65 TGCTGAATTAATTCGTATATGATTATAC
* * * * *
13637758 ATTGCCGAACTTGATTTATATATGGTTATACATT-GCCAAATT-AATTCGTATATGATTATACA-
1 ATTG-CGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATA-AG
* * *
13637820 TTGCTGAACTTTATTCATATATGGTTATAC
64 TTGCTGAA-TTAATTCGTATATGATTATAC
* * * *
13637850 ATTGCCAAATTGATTTGTATATGATTATACATTGTCGAATTTG-ATTCGTATATGAATATA
1 ATTGCGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATA
13637910 TATATGGTTG
Statistics
Matches: 203, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
90 4 0.02
91 123 0.61
92 76 0.37
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (92 bp):
ATTGCGAAATTGATTTGTATATGGTTATACATTATCGAAATTGAATTCGTATATGAATATAAGTT
GCTGAATTAATTCGTATATGATTATAC
Found at i:13637868 original size:152 final size:153
Alignment explanation
Indices: 13637576--13637872 Score: 357
Period size: 152 Copynumber: 1.9 Consensus size: 153
13637566 AATTCGTATA
* * * * * *
13637576 TTGCTGAAATTTATTTGTATATGGTTATACATTATCGAAATTGATTTGTCTATGAAGATAAGTTG
1 TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATAAGTTG
* * ** ***
13637641 CCAAATTGATTCGTATATGATTATACTTTGATGAAATTAATTTGTATATGGTATACATTATTGAA
66 CCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGGTATACATTAGCCAA
13637706 ATTGAATTGTATATGGATATAAG
131 ATTGAATTGTATATGGATATAAG
* * ***
13637729 TTGCTG-AATTAATTCGTATATGATTATACATTGCCGAACTTGATTTATATATGGTTATACA-TT
1 TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATA-AGTT
* * *
13637792 GCCAAATTAATTCGTATATGATTATACATTGCTGAACTTTATTCATATATGGTTATACATT-GCC
65 GCCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGG-TATACATTAGCC
*
13637856 AAATTGATTTGTATATG
129 AAATTGAATTGTATATG
13637873 ATTATACATT
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
152 105 0.88
153 15 0.12
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (153 bp):
TTGCTGAAATTAATTCGTATATGATTATACATTACCGAAATTGATTTATATATGAAGATAAGTTG
CCAAATTAATTCGTATATGATTATACATTGATGAAATTAATTCATATATGGTATACATTAGCCAA
ATTGAATTGTATATGGATATAAG
Found at i:13639565 original size:3 final size:3
Alignment explanation
Indices: 13639557--13639608 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
13639547 GTAGACGAGG
*
13639557 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13639605 ATA A
1 ATA A
13639609 AGCGGGTGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:13641634 original size:30 final size:30
Alignment explanation
Indices: 13641599--13641731 Score: 164
Period size: 30 Copynumber: 4.5 Consensus size: 30
13641589 TTACAAAATT
* *
13641599 TAAAATTACATTTTAACCCCTT-AACTTTCT
1 TAAAATTACATTTTAA-CCCTTAAATTTTCC
* *
13641629 TAAAATTATATTTTGACCCTTAAATTTTCC
1 TAAAATTACATTTTAACCCTTAAATTTTCC
*
13641659 TAAAATTACATATTAACCCCTT-AATTTTCC
1 TAAAATTACATTTTAA-CCCTTAAATTTTCC
* *
13641689 TAAAATTACCTTTTAA-CCTTAAATTTTCA
1 TAAAATTACATTTTAACCCTTAAATTTTCC
13641718 TAAAATTACATTTT
1 TAAAATTACATTTT
13641732 GTCCCCAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.04
29 25 0.28
30 55 0.62
31 5 0.06
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.44
Consensus pattern (30 bp):
TAAAATTACATTTTAACCCTTAAATTTTCC
Found at i:13641745 original size:59 final size:60
Alignment explanation
Indices: 13641599--13641731 Score: 196
Period size: 60 Copynumber: 2.2 Consensus size: 60
13641589 TTACAAAATT
* * * * *
13641599 TAAAATTACATTTTAACCCCTTAACTTTCTTAAAATTATATTTTGACCCTTAAATTTTCC
1 TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
* *
13641659 TAAAATTACATATTAACCCCTTAATTTTCCTAAAATTACCTTTT-AACCTTAAATTTTCA
1 TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
13641718 TAAAATTACATTTT
1 TAAAATTACATTTT
13641732 GTCCCCAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 26 0.40
60 39 0.60
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.44
Consensus pattern (60 bp):
TAAAATTACATTTTAACCCCTTAATTTTCCTAAAATTACATTTTGAACCTTAAATTTTCA
Found at i:13642225 original size:19 final size:20
Alignment explanation
Indices: 13642203--13642246 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
13642193 CCTAGGGTTT
*
13642203 GAAAAGAGGAAAAGG-AAAA
1 GAAAAGAAGAAAAGGAAAAA
* *
13642222 GAAAGGAAGAAGAGGAAAAA
1 GAAAAGAAGAAAAGGAAAAA
13642242 GAAAA
1 GAAAA
13642247 AAATAAAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAAAAGGAAAAA
Found at i:13645013 original size:3 final size:3
Alignment explanation
Indices: 13645005--13645056 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
13644995 GTAGACGAGG
13645005 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13645053 ATA A
1 ATA A
13645057 AGCGGATGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:13650347 original size:29 final size:29
Alignment explanation
Indices: 13650307--13650386 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
13650297 TTACCTCAAA
*
13650307 TTACATTTTAGTCATTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
13650336 TTACATTTTAGTCACTTATGTTTAAAATG
1 TTACATTTTAGTCACTTATGTTTAAAATG
13650365 TTACATTTTAGTCACTTATGTT
1 TTACATTTTAGTCACTTATGTT
13650387 ATCGTTTTGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (29 bp):
TTACATTTTAGTCACTTATGTTTAAAATG
Found at i:13652528 original size:25 final size:25
Alignment explanation
Indices: 13652478--13652534 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
13652468 AGCCAATGTA
*
13652478 GGAAAAAGAAAAAGAAGAAAATAAG
1 GGAAAAAGAAAAAGAAGAAAAAAAG
*
13652503 GGAAAATGAAAAAGAA-AATAAAAAG
1 GGAAAAAGAAAAAGAAGAA-AAAAAG
*
13652528 GTAAAAA
1 GGAAAAA
13652535 AAGGACGACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (25 bp):
GGAAAAAGAAAAAGAAGAAAAAAAG
Found at i:13656901 original size:23 final size:22
Alignment explanation
Indices: 13656872--13657032 Score: 144
Period size: 23 Copynumber: 7.0 Consensus size: 22
13656862 CTATCATCCA
*
13656872 CCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAAT-ATACCCT
* *
13656895 CTAAACACAAACAAGT-TACCCT
1 CCAAACACAACCAA-TATACCCT
13656917 CCAAACACAACCATATATACCCT
1 CCAAACACAACCA-ATATACCCT
* *
13656940 CCGAACACAACCACATTTACCCT
1 CCAAACACAACCA-ATATACCCT
*
13656963 CCAAACACAACCATATATGTAACCT
1 CCAAACACAACCA-ATA--TACCCT
** * * *
13656988 CTGAACACAAGCAAGCATACCGT
1 CCAAACACAACCAA-TATACCCT
13657011 CCAAACACAACCAATATACCCT
1 CCAAACACAACCAATATACCCT
13657033 TCAACATATC
Statistics
Matches: 109, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
22 23 0.21
23 68 0.62
24 2 0.02
25 16 0.15
ACGTcount: A:0.42, C:0.37, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAACACAACCAATATACCCT
Found at i:13657015 original size:48 final size:45
Alignment explanation
Indices: 13656872--13657028 Score: 160
Period size: 48 Copynumber: 3.4 Consensus size: 45
13656862 CTATCATCCA
* * *
13656872 CCAAACACAACCA-ATCATAGCCTCTAAACACAAACAAG-TTACCCT
1 CCAAACACAACCATAT-ATAACCTCTGAACAC-AACAAGCATACCCT
* * *
13656917 CCAAACACAACCATATATACCCTCCGAACACAACCA-CATTTACCCT
1 CCAAACACAACCATATATAACCTCTGAACACAACAAGCA--TACCCT
*
13656963 CCAAACACAACCATATATGTAACCTCTGAACACAAGCAAGCATACCGT
1 CCAAACACAACCATATA--TAACCTCTGAACACAA-CAAGCATACCCT
13657011 CCAAACACAACCA-ATATA
1 CCAAACACAACCATATATA
13657029 CCCTTCAACA
Statistics
Matches: 95, Mismatches: 9, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
44 4 0.04
45 27 0.28
46 25 0.26
47 3 0.03
48 32 0.34
49 2 0.02
50 2 0.02
ACGTcount: A:0.43, C:0.36, G:0.05, T:0.16
Consensus pattern (45 bp):
CCAAACACAACCATATATAACCTCTGAACACAACAAGCATACCCT
Found at i:13661141 original size:18 final size:18
Alignment explanation
Indices: 13661097--13661141 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
13661087 CATTCGTTTC
*
13661097 CAAAACATTATTCATTTA
1 CAAAACGTTATTCATTTA
*
13661115 CAAATCGTTATTCAATTT-
1 CAAAACGTTATTC-ATTTA
13661133 CAAAACGTT
1 CAAAACGTT
13661142 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCATTTA
Found at i:13665074 original size:22 final size:22
Alignment explanation
Indices: 13665050--13665127 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
13665040 CACTAATGAA
13665050 CAGAGAGCATTAAAGTGCTATA-
1 CAGAGAGCA-TAAAGTGCTATAC
*
13665072 CAGAGAGCACAAACGTGCTA-AC
1 CAGAGAGCATAAA-GTGCTATAC
* *
13665094 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCA-TAAAGTGCTA-T-AC
13665119 CAGAGAGCA
1 CAGAGAGCA
13665128 GCAACGTGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 4 0.09
22 30 0.65
23 2 0.04
25 10 0.22
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (22 bp):
CAGAGAGCATAAAGTGCTATAC
Found at i:13665127 original size:25 final size:24
Alignment explanation
Indices: 13665050--13665153 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
13665040 CACTAATGAA
* *
13665050 CAGAGAGCATTAAAGTGCTAT-A-
1 CAGAGAGCACTAACGTGCTATAAT
* *
13665072 CAGAGAGCACAAACGTGC--TAAC
1 CAGAGAGCACTAACGTGCTATAAT
13665094 CAGAGAGCACTAACGTGCTAGTAAT
1 CAGAGAGCACTAACGTGCTA-TAAT
13665119 CAGAGAGCAGC-AACGTGCTAATAAT
1 CAGAGAGCA-CTAACGTGCT-ATAAT
13665144 CAGAGAGCAC
1 CAGAGAGCAC
13665154 GCTAAAGTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 32 0.46
24 1 0.01
25 33 0.47
26 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTATAAT
Found at i:13665135 original size:47 final size:44
Alignment explanation
Indices: 13665050--13665139 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 44
13665040 CACTAATGAA
*
13665050 CAGAGAGCATTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
1 CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
*
13665094 CAGAGAGCACTAACGTGCTAGTAATCAGAGAGCAGC-AACGTGCTAA
1 CAGAGAGCACTAAAGTGCTA-T-A-CAGAGAGCA-CAAACGTGCTAA
13665140 TAATCAGAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
44 18 0.45
45 1 0.03
46 1 0.03
47 19 0.47
48 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (44 bp):
CAGAGAGCACTAAAGTGCTATACAGAGAGCACAAACGTGCTAAC
Found at i:13666041 original size:17 final size:16
Alignment explanation
Indices: 13666015--13666048 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
13666005 CCAAATATTC
13666015 TTTCTTTTCTTCCCTT
1 TTTCTTTTCTTCCCTT
*
13666031 TTTCTTTTTCTTTCCTT
1 TTTC-TTTTCTTCCCTT
13666048 T
1 T
13666049 CTCCCTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCTTTTCTTCCCTT
Found at i:13667883 original size:21 final size:21
Alignment explanation
Indices: 13667829--13667883 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
13667819 GTGGGGATCA
*
13667829 ACACACCCATATGAGCGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
13667850 ACACGCCCGTATGAGGGAGGC
1 ACACGCCCATATGAGCGAGGC
* *
13667871 ACAGGGCCATATG
1 ACACGCCCATATG
13667884 TAGGTGACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (21 bp):
ACACGCCCATATGAGCGAGGC
Found at i:13669708 original size:46 final size:45
Alignment explanation
Indices: 13669638--13669776 Score: 197
Period size: 46 Copynumber: 3.0 Consensus size: 45
13669628 AAAATGCTAT
* *
13669638 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTACAC
13669684 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACGTTACAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
* * * *
13669730 AACTTAGTATGGTTTTCTTTATTGAATTACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
13669776 A
1 A
13669777 CTTTGCCATG
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 83 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.37
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTACAC
Found at i:13671292 original size:22 final size:21
Alignment explanation
Indices: 13671261--13671315 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
13671251 CAATAGGCTA
*
13671261 GTCTCAAGACAATTTGCT-ATAT
1 GTCTCGAGACAATTT-CTCAT-T
13671283 GTCTCGAGACAATTTCTCGATT
1 GTCTCGAGACAATTTCTC-ATT
13671305 GTCTCGAGACA
1 GTCTCGAGACA
13671316 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (21 bp):
GTCTCGAGACAATTTCTCATT
Found at i:13673798 original size:21 final size:21
Alignment explanation
Indices: 13673772--13673831 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
13673762 GTGTGAAAGG
13673772 AGGCACATAGCCGTGTGA-CTA
1 AGGCACAT-GCCGTGTGACCTA
13673793 AGGCACATGCCCGTGTGACCTA
1 AGGCACATG-CCGTGTGACCTA
*
13673815 AGG-ACATGGTCGTGTGA
1 AGGCACAT-GCCGTGTGA
13673832 TCAGGCCATG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 1 0.03
21 27 0.77
22 7 0.20
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (21 bp):
AGGCACATGCCGTGTGACCTA
Found at i:13677336 original size:28 final size:29
Alignment explanation
Indices: 13677291--13677345 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
13677281 ATCTTTCATT
* *
13677291 TTAATTTAATTATTTTTTATTTTATAAAC
1 TTAATTTAATTATGTTTTATATTATAAAC
*
13677320 TTAA-TTACTTATGTTTTATATTATAA
1 TTAATTTAATTATGTTTTATATTATAA
13677346 CATATATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (29 bp):
TTAATTTAATTATGTTTTATATTATAAAC
Found at i:13677574 original size:13 final size:13
Alignment explanation
Indices: 13677556--13677590 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
13677546 ATAAAATCGT
13677556 AAATATTTAATAA
1 AAATATTTAATAA
13677569 AAATATTTAATAA
1 AAATATTTAATAA
13677582 AAATATTTA
1 AAATATTTA
13677591 CGAGCTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTTAATAA
Found at i:13688794 original size:16 final size:16
Alignment explanation
Indices: 13688773--13688842 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
13688763 TTTGGTTCGC
* *
13688773 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
* *
13688789 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
13688805 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
13688821 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
13688837 TGTAAT
1 TGTAAT
13688843 AGCAAATCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:13688875 original size:45 final size:45
Alignment explanation
Indices: 13688821--13688930 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
13688811 GGAATAGAGG
13688821 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
* * ***
13688866 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
13688910 TG--A---AATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
13688931 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 15 0.26
42 1 0.02
44 18 0.32
45 23 0.40
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (45 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
Found at i:13689097 original size:18 final size:17
Alignment explanation
Indices: 13689076--13689110 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13689066 TTATTATTAA
*
13689076 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13689094 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13689111 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13689164 original size:157 final size:157
Alignment explanation
Indices: 13688963--13689279 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
13688953 TAGAATACCC
*
13688963 TTAGCATAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
*
13689028 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
13689093 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
13689120 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
13689185 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
13689250 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
13689277 TTA
1 TTA
13689280 ATATTCTTAT
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:13689254 original size:18 final size:17
Alignment explanation
Indices: 13689233--13689267 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13689223 TTATTATTAA
*
13689233 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13689251 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13689268 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13707527 original size:2 final size:2
Alignment explanation
Indices: 13707520--13707568 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
13707510 ATGAGTTTGA
13707520 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13707562 CT CT CT C
1 CT CT CT C
13707569 AGGGATCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:13713859 original size:117 final size:119
Alignment explanation
Indices: 13713685--13713928 Score: 447
Period size: 117 Copynumber: 2.1 Consensus size: 119
13713675 CTATTTTCGT
13713685 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
*
13713750 AATAAA-TT-AAAAAAACCCTTATTTTGGCCCTTTGTTCGTACTTTTTTCCCGG
66 AATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTACTTTTTTCCCGG
13713802 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
* *
13713867 AATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTTCCGG
66 AATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTACTTTTTTCCCGG
13713921 ATTTTATT
1 ATTTTATT
13713929 TCTTTCAATA
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
117 71 0.58
118 2 0.02
119 49 0.40
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.52
Consensus pattern (119 bp):
ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
AATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTACTTTTTTCCCGG
Found at i:13713971 original size:155 final size:153
Alignment explanation
Indices: 13713802--13714188 Score: 598
Period size: 155 Copynumber: 2.5 Consensus size: 153
13713792 TTTTTCCCGG
* * * * *
13713802 ATTTTATTATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
* * *
13713867 AATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTT-TCCGGATTTTATTTC
66 AATAAATTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCT-CAGATTTTATTAC
13713931 TTTCAATAAAAATATATTATTTTTGC
130 TTT-AA-AAAAATATATTATTTTTGC
13713957 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
*
13714022 AATAAAATTTTTAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTA
66 AAT-AAA-TTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTA
* *
13714087 CTTTTAAAAAATATATTATTTTTGT
129 CTTTAAAAAAATATATTATTTTTGC
* *
13714112 ATTTTATTATTTTACACTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
1 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
13714177 AATAAA-TTAAAA
66 AATAAATTTAAAA
13714189 GTAATAAAAT
Statistics
Matches: 215, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
152 5 0.02
154 3 0.01
155 147 0.68
156 4 0.02
157 55 0.26
158 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.53
Consensus pattern (153 bp):
ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
AATAAATTTAAAAAAAACCCTTATTTCGGCCATTTGTTCGTATTTTTTTCTCAGATTTTATTACT
TTAAAAAAATATATTATTTTTGC
Found at i:13714581 original size:304 final size:308
Alignment explanation
Indices: 13714186--13714992 Score: 1339
Period size: 304 Copynumber: 2.6 Consensus size: 308
13714176 AAATAAATTA
* *
13714186 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATTCG-G-AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
* *
13714251 TTTAAAAAACACACTAAATAAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
64 TTTAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
* *
13714316 ATTAGAAAATAGTATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAG
129 ATTAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAG
*
13714381 AAATAAG-G-TTTTTTT-AATTTA-TTTAAAAAACACATTAAATTAATACATTTCAAACATAATG
194 AAATAAGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATG
*
13714442 TACTAAAATAATGTAAAATAATAAAATGAA-AAAATAATATATTTTTATTG
259 TACTAAAATAATGTAAAATAATAAAAT-AAGAAAAGAATATATTTTTATTG
*
13714492 AAAGAAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
1 AAAGTAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
*
13714557 TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAGT
66 TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
* *
13714622 TAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGG-G-AAAAAATACGAACAAAAGGCCGAA
131 TAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAGAA
13714685 ATAAGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTA
196 ATAAGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTA
13714750 CTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
261 CTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
*
13714798 AAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTAAATTTATT
1 AAAGTAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
* *
13714862 TAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
66 TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
* * *
13714927 TAGAAAATAATATATTTTTTTAAAGTAATAAAAT-C-TAAAAAAAAATACGAATAAAAGGTCA-A
131 TAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGG-CAGA
13714989 AATA
195 AATA
13714993 CAAACATGTT
Statistics
Matches: 471, Mismatches: 22, Indels: 17
0.92 0.04 0.03
Matches are distributed among these distances:
302 27 0.06
303 2 0.00
304 153 0.32
305 143 0.30
306 146 0.31
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.29
Consensus pattern (308 bp):
AAAGTAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
TAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAAAGGCAGAA
ATAAGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTA
CTAAAATAATGTAAAATAATAAAATAAGAAAAGAATATATTTTTATTG
Found at i:13714615 original size:153 final size:151
Alignment explanation
Indices: 13714186--13714961 Score: 1200
Period size: 153 Copynumber: 5.1 Consensus size: 151
13714176 AAATAAATTA
*
13714186 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATCCG-G-AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
*
13714251 TTTAAAAAACACACTAAATAAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
64 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
*
13714316 ATTAGAAAATAGTATATTTTTTT
129 ATTAGAAAATAATATATTTTTTT
* *
13714339 AAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAGAAATAA-GG-TTTTTTT-AATTT
1 AAAGTAATAAAATCC-G-G-AAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
* *
13714401 ATTTAAAAAACACATTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
63 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* *
13714466 AATGAAAAAATAATATATTTTTATT
128 AATTAGAAAATAATATATTTTT-TT
* *
13714491 GAAAGAAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
1 -AAAGTAATAAAATCCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
* *
13714556 TTAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAG
65 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
*
13714621 TTAGAAAATAATATATTGTTTT
130 TTAGAAAATAATATATTTTTTT
* *
13714643 AAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCCGAAATAAGAGTTTTTTTTAAATTTAT
1 AAAGTAATAAAATCC-GGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA-
* *
13714708 TTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
64 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
* *
13714773 ATAAGAAAAGAATATATTTTTATT
129 ATTAGAAAATAATATATTTTT-TT
* *
13714797 GAAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTAAATTTAT
1 -AAAGTAATAAAATCCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
* * *
13714861 TTAAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAA
65 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
13714926 TTAGAAAATAATATATTTTTTT
130 TTAGAAAATAATATATTTTTTT
13714948 AAAGTAATAAAATC
1 AAAGTAATAAAATC
13714962 TAAAAAAAAA
Statistics
Matches: 571, Mismatches: 42, Indels: 23
0.90 0.07 0.04
Matches are distributed among these distances:
150 39 0.07
151 105 0.18
152 143 0.25
153 208 0.36
154 62 0.11
155 14 0.02
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (151 bp):
AAAGTAATAAAATCCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
TAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
TAGAAAATAATATATTTTTTT
Found at i:13714950 original size:305 final size:301
Alignment explanation
Indices: 13714186--13714992 Score: 1321
Period size: 305 Copynumber: 2.6 Consensus size: 301
13714176 AAATAAATTA
*
13714186 AAAGTAATAAAATCCGAGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATTC--GAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTT-AAATTTA
* *
13714251 TTTAAAAAACACACTAAATAAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
63 TTTAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAA
* *
13714316 ATTAGAAAATAGTATATTTTTTTAAAGTAATAAAATCCGGAGAAAAAAATACGAACAAATGGCAG
128 ATTAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGG-G-AAAAAATACGAACAAAAGGCAG
*
13714381 AAATAAGGTTTTTTTAATTTATTTAAAAAACACATTAAATTAATACATTTCAAACATAATGTACT
191 AAATAAGGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACT
*
13714446 AAAATAATGTAAAATAATAAAATGAAAAAATAATATATTTTTATTG
256 AAAATAATGTAAAATAATAAAATGAAAAAAGAATATATTTTTATTG
* *
13714492 AAAGAAATAAAATTCGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTATT
1 AAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTAAATTTATT
*
13714557 TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAGT
65 TAAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAAT
* *
13714622 TAGAAAATAATATATTGTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCCGAAAT
130 TAGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCAGAAAT
13714687 AAGAGTTTTTTTTAAATTTATTTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACT
195 AAG-G-TTTTTTT-AATTTA-TTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACT
13714752 AAAATAATGTAAAATAATAAAAT-AAGAAAAGAATATATTTTTATTG
256 AAAATAATGTAAAATAATAAAATGAA-AAAAGAATATATTTTTATTG
13714798 AAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTATTT
1 AAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTATTT
* *
13714863 AAAAATCAAACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAATT
66 AAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAATT
**** *
13714928 AGAAAATAATATATTTTTTTAAAGTAATAAAATCTAAAAAAAAATACGAATAAAAGGTCA-AAAT
131 AGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGG-CAGAAAT
13714992 A
195 A
13714993 CAAACATGTT
Statistics
Matches: 470, Mismatches: 24, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
302 27 0.06
303 2 0.00
304 146 0.31
305 150 0.32
306 145 0.31
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.29
Consensus pattern (301 bp):
AAAGTAATAAAATTCGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTATTT
AAAAAACACACTAAATGAATACATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAATT
AGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAAAAAATACGAACAAAAGGCAGAAATA
AGGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAAT
AATGTAAAATAATAAAATGAAAAAAGAATATATTTTTATTG
Found at i:13729405 original size:18 final size:17
Alignment explanation
Indices: 13729369--13729407 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
13729359 TGTCATCCTT
*
13729369 TATTGAACTGTCGTTTG
1 TATTGAACTGTAGTTTG
*
13729386 TATTGAACTGATATTTTG
1 TATTGAACTG-TAGTTTG
13729404 TATT
1 TATT
13729408 TATTTGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.23, C:0.08, G:0.18, T:0.51
Consensus pattern (17 bp):
TATTGAACTGTAGTTTG
Found at i:13742181 original size:82 final size:81
Alignment explanation
Indices: 13742084--13742240 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13742074 ATTTACAAAT
*
13742084 ATAATTCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAAT-TTTTTTATATAAAAT
13742149 TTAAACATTTTGTTGAA
65 TTAAACATTTTGTTGAA
* * *** *
13742166 ATAATGCTTTTTATTAAAGATTATTTTTATTTAATAAAATTTTATTACTTTTTTTATATAAAATT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATTTTTTTATATAAAATT
*
13742231 TAAATATTTT
66 TAAACATTTT
13742241 ATTAAAATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 25 0.37
82 42 0.63
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.53
Consensus pattern (81 bp):
ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATTTTTTTATATAAAATT
TAAACATTTTGTTGAA
Found at i:13742232 original size:23 final size:24
Alignment explanation
Indices: 13742185--13742231 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
13742175 TTTATTAAAG
*
13742185 ATTATTTTTATTTAATAAAATTTT
1 ATTACTTTTATTTAATAAAATTTT
13742209 ATTACTTTT-TTTATATAAAATTT
1 ATTACTTTTATTTA-ATAAAATTT
13742232 AAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTACTTTTATTTAATAAAATTTT
Found at i:13742238 original size:27 final size:27
Alignment explanation
Indices: 13742179--13742238 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 27
13742169 ATGCTTTTTA
* *
13742179 TTAAAGATTATTTTTATTTAATAAAAT
1 TTAAATATTACTTTTATTTAATAAAAT
13742206 TT---TATTACTTTT-TTTATATAAAAT
1 TTAAATATTACTTTTATTTA-ATAAAAT
13742230 TTAAATATT
1 TTAAATATT
13742239 TTATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
23 4 0.15
24 17 0.63
27 6 0.22
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (27 bp):
TTAAATATTACTTTTATTTAATAAAAT
Found at i:13742240 original size:23 final size:24
Alignment explanation
Indices: 13742190--13742243 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
13742180 TAAAGATTAT
* *
13742190 TTTTATTTAATAAAATTTTATTAC
1 TTTTATTTAATAAAATTTAAATAC
13742214 TTTT-TTTATATAAAATTTAAATA-
1 TTTTATTTA-ATAAAATTTAAATAC
13742237 TTTTATT
1 TTTTATT
13742244 AAAATTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATTTAATAAAATTTAAATAC
Found at i:13742259 original size:18 final size:20
Alignment explanation
Indices: 13742217--13742261 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
13742207 TTATTACTTT
*
13742217 TTTTATATAAAATTTAAATA
1 TTTTATATAAAATTTAAAGA
13742237 TTTTAT-TAAAATTT-AAGA
1 TTTTATATAAAATTTAAAGA
13742255 TTTTATA
1 TTTTATA
13742262 GATGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 8 0.35
20 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTTATATAAAATTTAAAGA
Found at i:13742782 original size:66 final size:66
Alignment explanation
Indices: 13742670--13742801 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
13742660 GTTTATCCTA
* * * *
13742670 TCTTAATTCTAGCCTTGTTGTTTGCCATGAGATTCTTTTTAGCCATTGGTAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
13742735 G
66 G
*
13742736 TCTTGATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
13742801 G
66 G
13742802 CGAATTCAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (66 bp):
TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAACCATTGATAATCAAGTTCATCTT
G
Found at i:13747906 original size:15 final size:15
Alignment explanation
Indices: 13747886--13747916 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
13747876 AAGATCAGCA
13747886 ATATAATATATATAT
1 ATATAATATATATAT
13747901 ATATAATATATATAT
1 ATATAATATATATAT
13747916 A
1 A
13747917 AAGAAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATAATATATATAT
Found at i:13747909 original size:11 final size:11
Alignment explanation
Indices: 13747885--13747917 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
13747875 AAAGATCAGC
13747885 AATATA-ATAT
1 AATATATATAT
13747895 -ATATATATAT
1 AATATATATAT
13747905 AATATATATAT
1 AATATATATAT
13747916 AA
1 AA
13747918 AGAAATTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.24
10 4 0.19
11 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AATATATATAT
Found at i:13756621 original size:9 final size:9
Alignment explanation
Indices: 13756607--13756673 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
13756597 TTTGGTTAAA
13756607 AATTAACCG
1 AATTAACCG
13756616 AATTAACCG
1 AATTAACCG
13756625 AATT-ACCTG
1 AATTAACC-G
*
13756634 AATTAATCG
1 AATTAACCG
*
13756643 AATTATCCG
1 AATTAACCG
*
13756652 AATTACCCG
1 AATTAACCG
13756661 AATTAACCG
1 AATTAACCG
13756670 AATT
1 AATT
13756674 GAATCACTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 3 0.06
9 46 0.90
10 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:13756645 original size:27 final size:27
Alignment explanation
Indices: 13756607--13756673 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
13756597 TTTGGTTAAA
*
13756607 AATTAACCGAATTAACCGAATTACCTG
1 AATTAACCGAATTAACCGAATTACCCG
* *
13756634 AATTAATCGAATTATCCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
13756661 AATTAACCGAATT
1 AATTAACCGAATT
13756674 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTACCCG
Found at i:13759292 original size:17 final size:17
Alignment explanation
Indices: 13759272--13759315 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
13759262 CATTTTTATA
13759272 TTTAAAATTTAAATTTT
1 TTTAAAATTTAAATTTT
*
13759289 TTT-AAATTTTAATTTT
1 TTTAAAATTTAAATTTT
13759305 TTTAAATATTT
1 TTTAAA-ATTT
13759316 TTCATAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 15 0.62
17 5 0.21
18 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTAAAATTTAAATTTT
Found at i:13760027 original size:17 final size:17
Alignment explanation
Indices: 13759985--13760020 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
13759975 AAAAAAAACT
13759985 TAGATTATGATGGAAGA
1 TAGATTATGATGGAAGA
13760002 TAGATTATGATGGAAGA
1 TAGATTATGATGGAAGA
13760019 TA
1 TA
13760021 ATTTATGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.31
Consensus pattern (17 bp):
TAGATTATGATGGAAGA
Found at i:13763200 original size:126 final size:125
Alignment explanation
Indices: 13762816--13763384 Score: 728
Period size: 126 Copynumber: 4.5 Consensus size: 125
13762806 GATAAAATCA
* * * * * * *
13762816 AAGCAGGATGATTTATCATAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
13762881 AAGTCCTGGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAACAAACGTTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
13762941 AAGCAGAATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
13763006 TGGTACTGGAAGAAATAATTTCGAGTTGACATTTATGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCT-GAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTC
* * *
13763068 AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
13763133 AGGTCCTTAAAAAATAATTTTGAGTTGATGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* *
13763194 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * *
13763258 TAGGTCCTGGAAAAATAATTTCGACTTGATGATTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
13763318 TAGCAGGATGCTGTATGAGAAGAATTTGTGAAATTGCACCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
13763383 AG
66 AG
13763385 CATGTTTGGG
Statistics
Matches: 385, Mismatches: 54, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.00
124 65 0.17
125 66 0.17
126 177 0.46
127 76 0.20
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:13763276 original size:252 final size:250
Alignment explanation
Indices: 13762816--13763384 Score: 802
Period size: 252 Copynumber: 2.3 Consensus size: 250
13762806 GATAAAATCA
* * * * *
13762816 AAGCAGGATGATTTATCATAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
13762881 AAGTCCTGGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAACAAACGTTTCAAGCA
66 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
* * *
13762946 GAATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTA
131 GAATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAGTAGGTA
*
13763011 CTGGAAGAAATAATTTCGAGTTGA-CATTTATGAGCAAATAGTTTAAAAAAACGCTTC
196 CTGGAAGAAATAATTTCGACTTGATCA-TTATGAGCAAATAG--TAAAAAAACGCTTC
*
13763068 AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
13763133 AGGTCCTTAAAAAATAATTTTGAGTTGATGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTGCAAGC
*
13763198 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAGTAGG
130 AGAATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAGTAGG
* * * * *
13763262 TCCTGGAA-AAATAATTTCGACTTGATGATTCTGAGCAAATAGTATAAAATCGCTTC
194 TACTGGAAGAAATAATTTCGACTTGATCATTATGAGCAAATAGTAAAAAAACGCTTC
* * * * * *
13763318 TAGCAGGATGCTGTATGAGAAGAATTTGTGAAATTGCACCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
13763383 AG
66 AG
13763385 CATGTTTGGG
Statistics
Matches: 283, Mismatches: 31, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
250 72 0.25
252 134 0.47
253 75 0.27
254 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (250 bp):
AAGCAGGATGCTTTATGATAAGGATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
GAATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCGTTTGCTACAGTAGGTA
CTGGAAGAAATAATTTCGACTTGATCATTATGAGCAAATAGTAAAAAAACGCTTC
Found at i:13766537 original size:21 final size:21
Alignment explanation
Indices: 13766511--13766824 Score: 273
Period size: 21 Copynumber: 15.0 Consensus size: 21
13766501 TCAAATTATA
13766511 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
13766532 TTTAAGTTAAGTGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * * * *
13766553 TTTTATTTAAGTGTTACGATT
1 TTTAAGTTAAGGGTTAGGGTT
* *
13766574 TTAAAGTTAAGGGTTTAGGGTA
1 TTTAAGTTAAGGG-TTAGGGTT
* **
13766596 TTTAATTTAAGGGTTACAGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
13766617 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
13766639 TTAAATTTAAGGGTTAGGG-T
1 TTTAAGTTAAGGGTTAGGGTT
*
13766659 TTTAAGTTAAGGGTTTATGG--
1 TTTAAGTTAAGGG-TTAGGGTT
* *
13766679 -TT---TTAAGGTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* ***
13766696 TTTAATTTAAGGGTTTACAATT
1 TTTAAGTTAAGGG-TTAGGGTT
*
13766718 TTTAAGCTAATGGGTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
* **
13766740 TTAAAGTTAAGGGTTAGGAAT
1 TTTAAGTTAAGGGTTAGGGTT
*
13766761 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
13766782 TTTAAGTTAAGGGTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
13766803 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTT
13766825 GTAGGGTTTT
Statistics
Matches: 232, Mismatches: 49, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
15 5 0.02
16 6 0.03
18 2 0.01
19 2 0.01
20 12 0.05
21 132 0.57
22 70 0.30
23 3 0.01
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:13766606 original size:43 final size:42
Alignment explanation
Indices: 13766511--13766937 Score: 217
Period size: 43 Copynumber: 9.9 Consensus size: 42
13766501 TCAAATTATA
* * * *
13766511 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTG-TTAGGGTT
1 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTAGGG-T
* * *
13766553 TTTTATTTAAGTGTTACGATTTTAAAGTTAAGGGTTTAGGGT
1 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTAGGGT
*
13766595 ATTTAATTTAAGGGTTAC-AGTTTTTAAGTTAAGGGTTTAAGGT
1 -TTTAATTTAAGGGTTACGA-TTTTTAAGTTAAGGGTTTAGGGT
** *
13766638 TTTAAATTTAAGGGTTA-GGGTTTTAAGTTAAGGGTTTATGG-
1 TTT-AATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTAGGGT
* * * * ***
13766679 --T--TTTAAGGTTTAAGGTTTTTAATTTAAGGGTTTACAATT
1 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTA-GGGT
** * * * *
13766718 TTTAAGCTAATGGGTTAGGGTTTTAAAGTTAAGGG-TTAGGAAT
1 TTTAATTTAA-GGGTTACGATTTTTAAGTTAAGGGTTTAGG-GT
* * *
13766761 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGATT
1 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTAGG-GT
* * * * * *
13766803 TTTAAGTTAAAGGTTTAGGGTTGTAGGGTTTTAGGGTTTTAGGGTTTAGGGT
1 TTTAA-TTTAAGGGTTA----CG-A--TTTTTA-AG-TTAAGGGTTTAGGGT
* * * * *
13766855 GTTTAATTTAAGGGTTTTCAAATTTTAAATTAAAGGTTTAGGGTT
1 -TTTAATTTAAGGG-TTACGATTTTTAAGTTAAGGGTTTAGGG-T
* * * *
13766900 TTTAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTTTA
1 TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTA
13766938 TGATTTTAGG
Statistics
Matches: 300, Mismatches: 57, Indels: 55
0.73 0.14 0.13
Matches are distributed among these distances:
36 10 0.03
37 19 0.06
39 1 0.00
41 1 0.00
42 87 0.29
43 99 0.33
44 44 0.15
45 1 0.00
46 5 0.02
47 1 0.00
48 1 0.00
50 5 0.02
51 1 0.00
52 13 0.04
53 12 0.04
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (42 bp):
TTTAATTTAAGGGTTACGATTTTTAAGTTAAGGGTTTAGGGT
Found at i:13766670 original size:42 final size:41
Alignment explanation
Indices: 13766511--13766796 Score: 239
Period size: 43 Copynumber: 6.9 Consensus size: 41
13766501 TCAAATTATA
* * *
13766511 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTG-TTAGGGTT
1 TTTAATTTAAGGGTTAGGG-TTTTAAGTTAAGGGTTTAAGG-T
* * * * *
13766553 TTTTATTTAAGTGTTACGATTTTAAAGTTAAGGGTTTAGGGT
1 TTTAATTTAAGGGTTAGGGTTTT-AAGTTAAGGGTTTAAGGT
* *
13766595 ATTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAGGT
1 -TTTAATTTAAGGGTTA-GGGTTTTAAGTTAAGGGTTTAAGGT
*
13766638 TTTAAATTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTATGGT
1 TTT-AATTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTAAGGT
* **
13766680 TTTAAGGTTTAA-GG-T----TTTTAATTTAAGGGTTTACAATT
1 TTTAA--TTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTA-AGGT
**
13766718 TTTAAGCTAATGGGTTAGGGTTTTAAAGTTAAGGG-TT-AGGAAT
1 TTTAATTTAA-GGGTTAGGGTTTT-AAGTTAAGGGTTTAAGG--T
13766761 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
1 TTTAATTTAAGGGTTAGGG-TTTTAAGTTAAGGGTT
13766797 AGGATTTTTA
Statistics
Matches: 199, Mismatches: 25, Indels: 39
0.76 0.10 0.15
Matches are distributed among these distances:
36 3 0.02
37 17 0.09
38 8 0.04
39 1 0.01
41 8 0.04
42 73 0.37
43 75 0.38
44 14 0.07
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.45
Consensus pattern (41 bp):
TTTAATTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTAAGGT
Found at i:13766700 original size:16 final size:16
Alignment explanation
Indices: 13766623--13766697 Score: 58
Period size: 15 Copynumber: 5.1 Consensus size: 16
13766613 AGTTTTTAAG
13766623 TTAAGGGTTTAAGGTT
1 TTAAGGGTTTAAGGTT
* *
13766639 TTAA--ATTTAAGG-G
1 TTAAGGGTTTAAGGTT
13766652 TT-AGGGTTTTAA-G--
1 TTAAGGG-TTTAAGGTT
*
13766665 TTAAGGGTTTATGGTT
1 TTAAGGGTTTAAGGTT
13766681 TTAA-GGTTTAAGGTT
1 TTAAGGGTTTAAGGTT
13766696 TT
1 TT
13766698 TAATTTAAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
12 1 0.02
13 8 0.17
14 13 0.28
15 17 0.36
16 8 0.17
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (16 bp):
TTAAGGGTTTAAGGTT
Found at i:13766710 original size:22 final size:22
Alignment explanation
Indices: 13766680--13767011 Score: 100
Period size: 22 Copynumber: 14.9 Consensus size: 22
13766670 GGTTTATGGT
13766680 TTTAA-GGTTTAAGGTTTTTAA
1 TTTAAGGGTTTAAGGTTTTTAA
*
13766701 TTTAAGGGTTTACA-ATTTTTAA
1 TTTAAGGGTTTA-AGGTTTTTAA
** * *
13766723 GCTAATGGG-TTAGGGTTTTAAA
1 TTTAA-GGGTTTAAGGTTTTTAA
* *
13766745 GTTAAGGG-TT-AGGAATTTTAA
1 TTTAAGGGTTTAAGG-TTTTTAA
*
13766766 TTTAAGGG-TTAGGGTTTTTAA
1 TTTAAGGGTTTAAGGTTTTTAA
*
13766787 GTTAAGGG-TT-AGGATTTTTAA
1 TTTAAGGGTTTAAGG-TTTTTAA
* * * * *
13766808 GTTAAAGGTTT-AGGGTTGTAGGG
1 TTTAAGGGTTTAAGGTTTTTA--A
* *
13766831 TTTTAGGGTTTTAGGGTTTAGGGTGTTTAA
1 TTTAAGGG-TTTA------A-GGTTTTTAA
*
13766861 TTTAAGGGTTTTCAA--ATTTTAA
1 TTTAAGGG-TTT-AAGGTTTTTAA
* * *
13766883 ATTAAAGGTTTAGGGTTTTTAA
1 TTTAAGGGTTTAAGGTTTTTAA
* *
13766905 GTTAAGGG-TT-AGGAATTTTAA
1 TTTAAGGGTTTAAGG-TTTTTAA
* * *
13766926 TTTAAGGGTTT-ATGATTTTAGGG
1 TTTAAGGGTTTAAGGTTTTTA--A
* *
13766949 TTTTAGGGTTTATGGTTTTTAA
1 TTTAAGGGTTTAAGGTTTTTAA
* *
13766971 TTTTAA-GGTGTATGGTTTTTAA
1 -TTTAAGGGTTTAAGGTTTTTAA
* *
13766993 GTTAAGGGTTTATGGTTTT
1 TTTAAGGGTTTAAGGTTTT
13767012 AGGGTTTTAA
Statistics
Matches: 233, Mismatches: 49, Indels: 57
0.69 0.14 0.17
Matches are distributed among these distances:
20 7 0.03
21 85 0.36
22 90 0.39
23 23 0.10
24 9 0.04
25 1 0.00
30 11 0.05
31 2 0.01
32 5 0.02
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.47
Consensus pattern (22 bp):
TTTAAGGGTTTAAGGTTTTTAA
Found at i:13766852 original size:7 final size:7
Alignment explanation
Indices: 13766814--13766854 Score: 55
Period size: 8 Copynumber: 5.4 Consensus size: 7
13766804 TTAAGTTAAA
13766814 GGTTTAG
1 GGTTTAG
13766821 GGTTGTAG
1 GGTT-TAG
13766829 GGTTTTAG
1 GG-TTTAG
13766837 GGTTTTAG
1 GG-TTTAG
13766845 GGTTTAG
1 GGTTTAG
13766852 GGT
1 GGT
13766855 GTTTAATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 12 0.38
8 18 0.56
9 2 0.06
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:13766859 original size:16 final size:15
Alignment explanation
Indices: 13766814--13766859 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 15
13766804 TTAAGTTAAA
*
13766814 GGTTTAGGGTTGTAG
1 GGTTTAGGGTTTTAG
13766829 GGTTTTAGGGTTTTAG
1 GG-TTTAGGGTTTTAG
13766845 GGTTTAGGGTGTTTA
1 GGTTTAGGGT-TTTA
13766860 ATTTAAGGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.13, C:0.00, G:0.41, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGTTTTAG
Found at i:13766911 original size:21 final size:21
Alignment explanation
Indices: 13766877--13767120 Score: 97
Period size: 22 Copynumber: 11.1 Consensus size: 21
13766867 GGTTTTCAAA
*
13766877 TTTTAAATTAAAGGTTTAGGGT
1 TTTTAAGTT-AAGGTTTAGGGT
* **
13766899 TTTTAAGTTAAGGGTTAGGAA
1 TTTTAAGTTAAGGTTTAGGGT
* * *
13766920 TTTTAATTTAAGGGTTTA-TGA
1 TTTTAAGTTAA-GGTTTAGGGT
* * *
13766941 TTTTAGGGTTTTAGGGTTTATGGT
1 TTTTA-AG--TTAAGGTTTAGGGT
* * *
13766965 TTTTAATTTTAAGGTGTATGGT
1 TTTTAA-GTTAAGGTTTAGGGT
*
13766987 TTTTAAGTTAAGGGTTTATGGTTTTAGGG
1 TTTTAAGTTAA-GGTTTA--G-----GGT
* *
13767016 TTTTAAATTAAGGGTTAGGGT
1 TTTTAAGTTAAGGTTTAGGGT
* * *
13767037 TTTTAATTTATGGATTTAAGG-
1 TTTTAAGTTAAGG-TTTAGGGT
*
13767058 --TT---TTAAGGTTTAGAGT
1 TTTTAAGTTAAGGTTTAGGGT
*
13767074 TTTTAATTTAAGGGTTTAGGGT
1 TTTTAAGTTAA-GGTTTAGGGT
13767096 TTTTAAGTTAAGGGTTTAGGGT
1 TTTTAAGTTAA-GGTTTAGGGT
13767118 TTT
1 TTT
13767121 AGGTTTTAAA
Statistics
Matches: 167, Mismatches: 33, Indels: 44
0.68 0.14 0.18
Matches are distributed among these distances:
15 5 0.03
16 5 0.03
18 2 0.01
19 2 0.01
21 46 0.28
22 74 0.44
23 6 0.04
24 9 0.05
26 1 0.01
28 5 0.03
29 12 0.07
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (21 bp):
TTTTAAGTTAAGGTTTAGGGT
Found at i:13766911 original size:160 final size:163
Alignment explanation
Indices: 13766572--13766935 Score: 463
Period size: 160 Copynumber: 2.2 Consensus size: 163
13766562 AGTGTTACGA
*
13766572 TTTTAAAGTTAAGGGTTTAGG-GTATTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAG
1 TTTTAAAGTTAAGGG-TTAGGAAT-TTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAG
* * *
13766636 GTTTTAAATTTAAGGGTTAGGGTTTTAAGTTAAGGGTTTATGGTTTTAAGGTTTAAGGTTTTTAA
64 GTTTTAAATTAAAGGGTTAGGG-TTT-AGTTAAGGGTTTAGGGTTTTAAGGTTTAAGGTGTTTAA
* * *
13766701 TTTAAGGGTTTACAATTTTTAAGCTAATGGGTTAGGG
127 TTTAAGGGTTTACAAATTTTAAACTAAAGGGTTAGGG
**
13766738 TTTTAAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TT-AGGA
1 TTTTAAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAGG-
* * * *
13766801 TTTTTAAGTTAAAGGTTTAGGG-TT-G-T-AGGGTTTTAGGGTTTTAGGGTTTAGGGTGTTTAAT
65 -TTTTAAATTAAAGGGTTAGGGTTTAGTTAAGGG-TTTAGGGTTTTAAGGTTTAAGGTGTTTAAT
* * *
13766862 TTAAGGGTTTTCAAATTTTAAATTAAAGGTTTAGGG
128 TTAAGGGTTTACAAATTTTAAACTAAAGGGTTAGGG
*
13766898 TTTTTAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTT
1 TTTTAAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTT
13766936 TATGATTTTA
Statistics
Matches: 177, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
159 4 0.02
160 94 0.53
161 1 0.01
163 5 0.03
164 2 0.01
165 55 0.31
166 16 0.09
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (163 bp):
TTTTAAAGTTAAGGGTTAGGAATTTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAGGT
TTTAAATTAAAGGGTTAGGGTTTAGTTAAGGGTTTAGGGTTTTAAGGTTTAAGGTGTTTAATTTA
AGGGTTTACAAATTTTAAACTAAAGGGTTAGGG
Found at i:13767004 original size:29 final size:29
Alignment explanation
Indices: 13766972--13767031 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
13766962 GGTTTTTAAT
* *
13766972 TTTAAGGTGTAT-GGTTTTTAAGTTAAGGG
1 TTTAAGGT-TATAGGGTTTTAAATTAAGGG
* *
13767001 TTTATGGTTTTAGGGTTTTAAATTAAGGG
1 TTTAAGGTTATAGGGTTTTAAATTAAGGG
13767030 TT
1 TT
13767032 AGGGTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.48
Consensus pattern (29 bp):
TTTAAGGTTATAGGGTTTTAAATTAAGGG
Done.