Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 54 of 213
Found at i:14562395 original size:44 final size:44
Alignment explanation
Indices: 14562259--14562661 Score: 154
Period size: 44 Copynumber: 9.2 Consensus size: 44
14562249 CAACCCAGAG
*
14562259 AGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * * ** * * ***
14562303 AGGCAAGATCTGCTATTTTTAATCTGTTTCGCT-ACAACCCA-GA
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* *
14562346 GAGGCAAGGCTGGTGTCTTCGATTTGCTTCGCTGTCGGTGCAGGA
1 -AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* *** * ** * *** *
14562391 AGGCAAGATCTGCAATTTTTAATCTAC-TCTGCTG-CAACCCAGGG
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTC-GCTGTCAGTGCAGGA
* *
14562435 AGGGAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * * ** * * * *** *
14562479 AGGCAAGATCTGCTATTTTTAACCTGCTCCGTTG-CAACCCAGGG
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * *
14562523 AGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGGCAGTGCAAGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * * ** * * * ***
14562567 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCT-ACAACCCAGGGA
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCA-GGA
* * *
14562612 A-GCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTACAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
*
14562655 AAGCAAG
1 AGGCAAG
14562662 ATCTGTTATC
Statistics
Matches: 234, Mismatches: 111, Indels: 28
0.63 0.30 0.08
Matches are distributed among these distances:
43 70 0.30
44 95 0.41
45 69 0.29
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (44 bp):
AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
Found at i:14564015 original size:14 final size:15
Alignment explanation
Indices: 14563992--14564024 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14563982 ATCGACGCTT
14563992 TTCCAAATAAGG-CC
1 TTCCAAATAAGGCCC
*
14564006 TTCCACATAAGGCCC
1 TTCCAAATAAGGCCC
14564021 TTCC
1 TTCC
14564025 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.36, G:0.12, T:0.24
Consensus pattern (15 bp):
TTCCAAATAAGGCCC
Found at i:14564897 original size:25 final size:26
Alignment explanation
Indices: 14564846--14564906 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
14564836 AAGAAAATCC
* **
14564846 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
14564872 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
14564897 AAAATGAATG
1 AAAA-GAATG
14564907 GAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:14568869 original size:10 final size:10
Alignment explanation
Indices: 14568856--14568882 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14568846 ATAAAGAAAA
14568856 ATATATAAAT
1 ATATATAAAT
14568866 ATATATAAAT
1 ATATATAAAT
14568876 ATATATA
1 ATATATA
14568883 TTATAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATAAAT
Found at i:14569089 original size:65 final size:65
Alignment explanation
Indices: 14569013--14569147 Score: 270
Period size: 65 Copynumber: 2.1 Consensus size: 65
14569003 ACAAAAGTAA
14569013 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
1 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
14569078 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
1 AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
14569143 AAAAA
1 AAAAA
14569148 CATATGTATA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.61, C:0.01, G:0.10, T:0.27
Consensus pattern (65 bp):
AAAAAATTGAAACTAAATATAAAAGTATATATATGTATATAAAAGTTAGGAAGTAAAATAAAAAT
Found at i:14569258 original size:16 final size:15
Alignment explanation
Indices: 14569233--14569265 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
14569223 GTGCATGAAT
14569233 ATAAAAATAATAATA
1 ATAAAAATAATAATA
14569248 ATAATAAATAATAATA
1 ATAA-AAATAATAATA
14569264 AT
1 AT
14569266 GATACAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAAAATAATAATA
Found at i:14569259 original size:13 final size:13
Alignment explanation
Indices: 14569241--14569265 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14569231 ATATAAAAAT
14569241 AATAATAATAATA
1 AATAATAATAATA
14569254 AATAATAATAAT
1 AATAATAATAAT
14569266 GATACAAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:14569775 original size:19 final size:19
Alignment explanation
Indices: 14569743--14569796 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
14569733 AATCATATCT
*
14569743 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
14569762 TCTAATATTACATATCATA
1 TCTAAGATTACATATCATA
*
14569781 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14569797 CTTGAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14569792 original size:38 final size:40
Alignment explanation
Indices: 14569720--14569796 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
14569710 AAATTAAATC
14569720 TCTAATATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAATATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
14569762 TCTAATATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAATATTACAAAATCATATTCTAAGATTGCATATC
14569797 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (40 bp):
TCTAATATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:14570996 original size:185 final size:185
Alignment explanation
Indices: 14570684--14571055 Score: 726
Period size: 185 Copynumber: 2.0 Consensus size: 185
14570674 TATTCAAGTA
14570684 AATACCTCATGATAAGTTATGTTCATTATTAATAGATGTGTCTATCCCAATAGGCATTTATTGAA
1 AATACCTCATGATAAGTTATGTTCATTATTAATAGATGTGTCTATCCCAATAGGCATTTATTGAA
*
14570749 TAGTTATATCATATTAATAAGAGATAAATTTCATTTGCAAGACATACCAAAAATCACCAAGACAT
66 TAGTTATATCATATTAATAAGAGATAAATTTCATTTGCAAGACATACCAAAAACCACCAAGACAT
14570814 AGCCAAAACTCAAATATTTACTTCAGAATAGCCTCCAACTTTAGGCACCAAGATG
131 AGCCAAAACTCAAATATTTACTTCAGAATAGCCTCCAACTTTAGGCACCAAGATG
14570869 AATACCTCATGATAAGTTATGTTCATTATTAATAGATGTGTCTATCCCAATAGGCATTTATTGAA
1 AATACCTCATGATAAGTTATGTTCATTATTAATAGATGTGTCTATCCCAATAGGCATTTATTGAA
*
14570934 TAGTTATATCATATTAATAAGAGATAAATTTCATTTGCAAGACATACCAAAAGCCACCAAGACAT
66 TAGTTATATCATATTAATAAGAGATAAATTTCATTTGCAAGACATACCAAAAACCACCAAGACAT
14570999 AGCCAAAACTCAAATATTTACTTCAGAATAGCCTCCAACTTTAGGCACCAAGATG
131 AGCCAAAACTCAAATATTTACTTCAGAATAGCCTCCAACTTTAGGCACCAAGATG
14571054 AA
1 AA
14571056 AAAAAAAAGT
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
185 185 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (185 bp):
AATACCTCATGATAAGTTATGTTCATTATTAATAGATGTGTCTATCCCAATAGGCATTTATTGAA
TAGTTATATCATATTAATAAGAGATAAATTTCATTTGCAAGACATACCAAAAACCACCAAGACAT
AGCCAAAACTCAAATATTTACTTCAGAATAGCCTCCAACTTTAGGCACCAAGATG
Found at i:14574435 original size:16 final size:15
Alignment explanation
Indices: 14574414--14574443 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14574404 GGAAAATAAG
14574414 AATATAACAGTAACAT
1 AATATAACA-TAACAT
14574430 AATATAACATAACA
1 AATATAACATAACA
14574444 CTGAACTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.23
Consensus pattern (15 bp):
AATATAACATAACAT
Found at i:14575172 original size:23 final size:23
Alignment explanation
Indices: 14575142--14575187 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14575132 AACACTTAAA
14575142 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
14575165 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
14575188 TTAACTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
ACATGAACAGAACTTTTATTATT
Found at i:14585947 original size:30 final size:30
Alignment explanation
Indices: 14585911--14585979 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
14585901 ATTTTGGCAA
* *
14585911 AAAACTCTTAAATTTCTCCCTAAATTTTTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
*
14585941 AAAACTCTCAAATTTCTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
14585971 AAAACTCTC
1 AAAACTCTC
14585980 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:14591176 original size:125 final size:122
Alignment explanation
Indices: 14590957--14591202 Score: 336
Period size: 125 Copynumber: 2.0 Consensus size: 122
14590947 TACTTTATAG
* * * * *
14590957 AAGAACTACTGTAGAAAAAGAGCGTCGACGTGGGTTTTTTCATCAATTTTGCTGAAGTGCATCCT
1 AAGAACTACTATAGAAAAAGAGCATCCACATGGGTTTTTTCATCAATTTTGCTAAAGTGCATCCT
* * * *
14591022 GCTTGAAAGGTTTTTGATACTATTTGTTCAGAAAC-GTTTTCTCAAAATTATTTTTTC
66 GCTTGAAAGGTTTTTCACACTATTTGTTCA-AAACTGTATTCACAAAATTATTTTTTC
14591079 AAGAACTACTATAGAAAAAGAGCATCCACATGGGAGTTTTTTCAGT-AATTTTGCTAACAGTGCA
1 AAGAACTACTATAGAAAAAGAGCATCCACAT-GG-GTTTTTTCA-TCAATTTTGCTAA-AGTGCA
14591143 TCCTGCTTG-AAGCGTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTT
62 TCCTGCTTGAAAG-GTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTT
14591203 TTTAGGAATT
Statistics
Matches: 109, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
122 27 0.25
123 2 0.02
124 26 0.24
125 54 0.50
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (122 bp):
AAGAACTACTATAGAAAAAGAGCATCCACATGGGTTTTTTCATCAATTTTGCTAAAGTGCATCCT
GCTTGAAAGGTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTTC
Found at i:14591355 original size:67 final size:69
Alignment explanation
Indices: 14591281--14591414 Score: 191
Period size: 67 Copynumber: 2.0 Consensus size: 69
14591271 AAACACAATA
14591281 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTT-AAA-AACACTAAACCTTAATTTATT
1 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTTAAAAGAACACTAAACCTTAATTTATT
14591344 TAAT
66 TAAT
*** * * *
14591348 TTATTTAAAACCCCTAAACCCTAATTTAATTAATTTTTTAAAAAGAACACTAAATCTTGATTTAT
1 TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTT-AAAAGAACACTAAACCTTAATTTAT
14591413 TT
65 TT
14591415 TTTAAAATTC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
67 35 0.60
69 3 0.05
70 20 0.34
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.41
Consensus pattern (69 bp):
TTATTTAAAAAAACTAAACCCTAAATTAATTAATTTTTTAAAAGAACACTAAACCTTAATTTATT
TAAT
Found at i:14591365 original size:34 final size:33
Alignment explanation
Indices: 14591284--14591391 Score: 153
Period size: 33 Copynumber: 3.2 Consensus size: 33
14591274 CACAATATTA
* *
14591284 TTTAAAAAAACTAAACCCTAAATTAATTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
* *
14591317 TTTAAAAACACTAAACCTTAATTTATTTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
* *
14591350 ATTTAAAACCCCTAAACCCTAATTTAATTAATTT
1 -TTTAAAAACACTAAACCCTAATTTAATTAATTT
14591384 TTTAAAAA
1 TTTAAAAA
14591392 GAACACTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
33 36 0.55
34 29 0.45
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (33 bp):
TTTAAAAACACTAAACCCTAATTTAATTAATTT
Found at i:14591500 original size:42 final size:42
Alignment explanation
Indices: 14591441--14591521 Score: 137
Period size: 42 Copynumber: 1.9 Consensus size: 42
14591431 CTTAGAACCC
*
14591441 TAAATTATTTTAACAAAACCCTAAACCCTACAAA-CCTAACAT
1 TAAATTATTTTAACAAAACCCT-AACCCTAAAAATCCTAACAT
14591483 TAAATTATTTTAACAAAACCCTAACCCTAAAAATCCTAA
1 TAAATTATTTTAACAAAACCCTAACCCTAAAAATCCTAA
14591522 ACCAAAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 10 0.27
42 27 0.73
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (42 bp):
TAAATTATTTTAACAAAACCCTAACCCTAAAAATCCTAACAT
Found at i:14593965 original size:24 final size:23
Alignment explanation
Indices: 14593927--14593985 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
14593917 TTTACCATTC
14593927 ATATATATATGTATACATTATTAT
1 ATATATATATGTATACA-TATTAT
* * *
14593951 ATATATGTATTTATACATATTCT
1 ATATATATATGTATACATATTAT
*
14593974 ATA-ATTTATGTA
1 ATATATATATGTA
14593986 CATACCTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 7 0.23
23 8 0.27
24 15 0.50
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (23 bp):
ATATATATATGTATACATATTAT
Found at i:14594224 original size:4 final size:4
Alignment explanation
Indices: 14594217--14594241 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14594207 CGGTGTTTGT
14594217 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
14594242 GCCCATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:14594593 original size:109 final size:109
Alignment explanation
Indices: 14594400--14594722 Score: 463
Period size: 109 Copynumber: 3.0 Consensus size: 109
14594390 AAGAATTTTT
*
14594400 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTGATGTGCTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
14594465 CGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAA
* * *
14594509 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAAGGTGCCCTAATTTGCTGGATTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
14594574 CGATTTTTCTCGCTT-GACCAAATAACTAAATATCCTTTCAAAAA
66 CGATTTTTCTCG-TTCGACCAAATAGCCAAATATCCTTTTAAAAA
* * * * * * *
14594618 TTTCAAAATAAGGCAATGTTTTGTGTTTGGAAACTCGAGAAAACTTGCTCTAATGCGTTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
14594683 CGA--TTTCTCGTTGGACCAAATAGCCGAATATCCTCTTAAA
66 CGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAA
14594723 TCTTAATCTA
Statistics
Matches: 190, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
106 2 0.01
107 29 0.15
109 157 0.83
110 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:14598541 original size:23 final size:23
Alignment explanation
Indices: 14598515--14598612 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
14598505 ATAAGTGCCA
14598515 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14598538 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14598561 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14598583 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14598606 CACTGAT
1 CACTGAT
14598613 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14598580 original size:45 final size:45
Alignment explanation
Indices: 14598522--14598610 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
14598512 CCACACTGAT
* *
14598522 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
14598567 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
14598611 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:14605161 original size:23 final size:23
Alignment explanation
Indices: 14605135--14605232 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
14605125 ATAAGTGCCA
14605135 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14605158 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14605181 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14605203 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14605226 CACTGAT
1 CACTGAT
14605233 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14605200 original size:45 final size:45
Alignment explanation
Indices: 14605142--14605230 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
14605132 CCACACTGAT
* *
14605142 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
14605187 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
14605231 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:14611782 original size:23 final size:23
Alignment explanation
Indices: 14611756--14611853 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
14611746 ATAAGTGCCA
14611756 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14611779 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14611802 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14611824 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14611847 CACTGAT
1 CACTGAT
14611854 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14611821 original size:45 final size:45
Alignment explanation
Indices: 14611763--14611851 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
14611753 CCACACTGAT
* *
14611763 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
14611808 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
14611852 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:14615141 original size:14 final size:13
Alignment explanation
Indices: 14615115--14615180 Score: 57
Period size: 13 Copynumber: 4.9 Consensus size: 13
14615105 AAATTGTTAA
14615115 AAAAAAG-AAAAG
1 AAAAAAGAAAAAG
*
14615127 AAAGAAGGAAAAAG
1 AAA-AAAGAAAAAG
14615141 AAAAAAGAAAGAAG
1 AAAAAAGAAA-AAG
14615155 AAGAAAA-AATAAA-
1 AA-AAAAGAA-AAAG
14615168 AAGAAAAGAAAAA
1 AA-AAAAGAAAAA
14615181 ATGAGAGGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.07
13 19 0.41
14 19 0.41
15 5 0.11
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:14615149 original size:17 final size:17
Alignment explanation
Indices: 14615116--14615181 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
14615106 AATTGTTAAA
*
14615116 AAAAAGAAAAGAAAGAAGG
1 AAAAAG-AAA-AAAGAAAG
14615135 AAAAAGAAAAAAGAAAG
1 AAAAAGAAAAAAGAAAG
* * *
14615152 AAGAAGAAAAAATAAAA
1 AAAAAGAAAAAAGAAAG
14615169 AGAAAAGAAAAAA
1 A-AAAAGAAAAAA
14615182 TGAGAGGCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
17 22 0.54
18 13 0.32
19 6 0.15
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAAGAAAG
Found at i:14615175 original size:24 final size:25
Alignment explanation
Indices: 14615115--14615177 Score: 87
Period size: 23 Copynumber: 2.6 Consensus size: 25
14615105 AAATTGTTAA
14615115 AAAAAAGAAAAGAAAGAAGGAAAAAG
1 AAAAAAGAAAAG-AAGAAGGAAAAAG
14615141 AAAAAAG-AAAGAAGAA-GAAAAA-
1 AAAAAAGAAAAGAAGAAGGAAAAAG
14615163 ATAAAAAGAAAAGAA
1 A-AAAAAGAAAAGAA
14615178 AAAATGAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 1 0.03
23 12 0.34
24 11 0.31
25 4 0.11
26 7 0.20
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (25 bp):
AAAAAAGAAAAGAAGAAGGAAAAAG
Found at i:14615180 original size:18 final size:18
Alignment explanation
Indices: 14615136--14615182 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
14615126 GAAAGAAGGA
*
14615136 AAAAG-AAAAA-AGAAAG
1 AAAAGAAAAAATAAAAAG
14615152 AAGAAGAAAAAATAAAAAG
1 AA-AAGAAAAAATAAAAAG
14615171 AAAAGAAAAAAT
1 AAAAGAAAAAAT
14615183 GAGAGGCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 2 0.07
17 3 0.11
18 15 0.56
19 7 0.26
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAAATAAAAAG
Found at i:14615181 original size:7 final size:7
Alignment explanation
Indices: 14615113--14615174 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
14615103 TAAAATTGTT
14615113 AAAAAA-
1 AAAAAAG
14615119 AAGAAAAG
1 AA-AAAAG
*
14615127 AAAGAAG
1 AAAAAAG
*
14615134 GAAAAAG
1 AAAAAAG
14615141 AAAAAAG
1 AAAAAAG
*
14615148 AAAGAAG
1 AAAAAAG
*
14615155 AAGAAAAA
1 AA-AAAAG
14615163 ATAAAAAG
1 A-AAAAAG
14615171 AAAA
1 AAAA
14615175 GAAAAAATGA
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
6 2 0.05
7 30 0.68
8 11 0.25
9 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:14616601 original size:44 final size:44
Alignment explanation
Indices: 14616553--14616765 Score: 143
Period size: 44 Copynumber: 4.8 Consensus size: 44
14616543 AAACCACCAC
* *
14616553 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
* * * *
14616597 TCCTATCTTCCTAAGCAATAGTGGAGCAGATCGAAGACAGTG-A-A
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAG--ATTGCAGA
* * * ** * *
14616641 TCTTATCTTCCC-AAGGTAGTAG-GGAAGCAGATTTAA-A--CCACCA
1 TCCTATC-TCCCTAA-GCAGTAGTGG-AGTAGATCGAAGATTGCA-GA
*
14616684 CTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGA
1 -TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
* * * * *
14616729 TTCTGTCTCCCTAAGTAATAGTGAAGTAGATCGAAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA
14616766 CAGTAAATCT
Statistics
Matches: 129, Mismatches: 26, Indels: 28
0.70 0.14 0.15
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 18 0.14
44 85 0.66
45 19 0.15
46 5 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCAGA
Found at i:14616658 original size:132 final size:132
Alignment explanation
Indices: 14616421--14616782 Score: 557
Period size: 132 Copynumber: 2.8 Consensus size: 132
14616411 AAGCCATTAG
* * * *
14616421 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTCGAATATTGTAGATCCTGTC-TCTCTAAGCAGTA
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTTC-CTAAGCAATA
* * *
14616485 GTGGAGCAGATCAAAGACGGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAAATTTAAACCAC
65 GTGGAGCAGATCGAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAACCAC
14616550 CAC
130 CAC
*
14616553 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTATCTTCCTAAGCAATAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTTCCTAAGCAATAG
*
14616618 TGGAGCAGATCGAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAACCACC
66 TGGAGCAGATCGAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAACCACC
14616683 AC
131 AC
* * * *
14616685 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCTCCCTAAGTAATAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTTCCTAAGCAATAG
* * *
14616750 TGAAGTAGATCGAAGACAGTAAATCTTA-CTTCC
66 TGGAGCAGATCGAAGACAGTGAATCTTATCTTCC
14616783 TTGGCGGTGC
Statistics
Matches: 212, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
131 5 0.02
132 205 0.97
133 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (132 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTTCCTAAGCAATAG
TGGAGCAGATCGAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAACCACC
AC
Found at i:14616832 original size:50 final size:50
Alignment explanation
Indices: 14616771--14617381 Score: 337
Period size: 50 Copynumber: 12.3 Consensus size: 50
14616761 GAAGACAGTA
** *
14616771 AATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * ** * ** * * * * * *
14616821 AATCTTGCTTCCCCGACATTGCAATTAAAAATATTGAGGCCATAACGGCA
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * *
14616871 AATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTGAAGCTATAACGGTG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
** * ** * * ** * * * *
14616921 AATCTCGCTTCCCCGACATTGAAATTAAAAAGATTAAAGCCACAACAGCG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * *
14616971 AATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * ** * ** * * * *
14617021 AATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGACG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * * *
14617071 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGTTGCAACGGTG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
** **** * * * * * * *
14617121 AATCTCGCTTCCCCGATATTGAAAT-TAAAAGATTGAGGCCACAACGACG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * * * *
14617170 AATCTTACATT-CCAGGTGGTGCAGTGGAATAGGTTGAAGCTACAACGGAG
1 AATCTTAC-TTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
** * ** * * * * * * **
14617220 AATCTCGCTTCCCCGACATTGTAAT-TAAAAGATTGAGGCCACAACGGTA
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * * *
14617269 AATCTTACTTCCCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACGACG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
* * ** * ** * * *
14617319 AATCTTTCTTCCCCGACATTGCATTTAAATAGATTGAAGCTACAACAGTG
1 AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
14617369 AATCTTACTTCCC
1 AATCTTACTTCCC
14617382 TGACGAACAG
Statistics
Matches: 390, Mismatches: 167, Indels: 8
0.69 0.30 0.01
Matches are distributed among these distances:
49 65 0.17
50 325 0.83
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
AATCTTACTTCCCCGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCG
Found at i:14617207 original size:99 final size:100
Alignment explanation
Indices: 14616771--14617383 Score: 813
Period size: 100 Copynumber: 6.2 Consensus size: 100
14616761 GAAGACAGTA
* * * *
14616771 AATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCG
1 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
* * * *
14616836 ACATTGCAATTAAAAATATTGAGGCCATAACGGCA
66 ACATTGCAATTAAAAAGATTGAGGCCACAACGACG
* *
14616871 AATCTTACTTCCCAGGCGGTGCAGTGGAACAGATTGAAGCTATAACGGTGAATCTCGCTTCCCCG
1 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
* * *
14616936 ACATTGAAATTAAAAAGATTAAAGCCACAAC-AGCG
66 ACATTGCAATTAAAAAGATTGAGGCCACAACGA-CG
* *
14616971 AATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCG
1 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
14617036 ACATTGCAATTAAAAAGATTGAGGCCACAACGACG
66 ACATTGCAATTAAAAAGATTGAGGCCACAACGACG
* *
14617071 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGTTGCAACGGTGAATCTCGCTTCCCCG
1 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
* *
14617136 ATATTGAAATT-AAAAGATTGAGGCCACAACGACG
66 ACATTGCAATTAAAAAGATTGAGGCCACAACGACG
* * * * *
14617170 AATCTTACATT-CCAGGTGGTGCAGTGGAATAGGTTGAAGCTACAACGGAGAATCTCGCTTCCCC
1 AATCTTAC-TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCC
* ***
14617234 GACATTGTAATT-AAAAGATTGAGGCCACAACGGTA
65 GACATTGCAATTAAAAAGATTGAGGCCACAACGACG
* * ** **
14617269 AATCTTACTTCCCTGGTGGTGCAGTGGAATAGATTGAAGCTACAACGACGAATCTTTCTTCCCCG
1 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
* * * * *
14617334 ACATTGCATTTAAATAGATTGAAGCTACAAC-AGTG
66 ACATTGCAATTAAAAAGATTGAGGCCACAACGA-CG
14617369 AATCTTACTTCCCTG
1 AATCTTACTTCCCTG
14617384 ACGAACAGAT
Statistics
Matches: 456, Mismatches: 51, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
98 2 0.00
99 172 0.38
100 281 0.62
101 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (100 bp):
AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCG
ACATTGCAATTAAAAAGATTGAGGCCACAACGACG
Found at i:14619735 original size:109 final size:109
Alignment explanation
Indices: 14619544--14619970 Score: 644
Period size: 109 Copynumber: 3.9 Consensus size: 109
14619534 AATTTTTTTT
* *
14619544 AAAATAAGGCAATGTTTTGCGTTCGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* *
14619609 TTTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTTGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * *
14619653 AAAATAAGGCAACGTTTTGCGTTTGGAAATTCGAGAAAATGTGCCATAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
*
14619718 TTTTCTCGTTTGACCAAATAACAAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTTGACCAAATAACCAAATATCCTTTTAAAAATTTC
14619762 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* * *
14619827 TTTTCTCGCTTGACCAAATAACTAAATATCCTTTCAAAAATTTC
66 TTTTCTCGTTTGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * * * * *
14619871 AAAATAAGGCAGTGTTTTGTGTTTGGAAACTCGAG-AAACTTGCTCTAATGCGCTGGGTTTCGA-
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* * * *
14619934 -TTTCTCATTGGACCAAATAGCCGAATATCCTTTTAAA
66 TTTTCTCGTTTGACCAAATAACCAAATATCCTTTTAAA
14619971 TCTTAATCCA
Statistics
Matches: 291, Mismatches: 27, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
106 30 0.10
108 25 0.09
109 236 0.81
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (109 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
TTTTCTCGTTTGACCAAATAACCAAATATCCTTTTAAAAATTTC
Found at i:14640453 original size:16 final size:16
Alignment explanation
Indices: 14640432--14640464 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14640422 TGAGAAAAGA
14640432 AATCTTGTCCTGGGGC
1 AATCTTGTCCTGGGGC
14640448 AATCTTGTCCTGGGGC
1 AATCTTGTCCTGGGGC
14640464 A
1 A
14640465 GCTGGCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.30
Consensus pattern (16 bp):
AATCTTGTCCTGGGGC
Found at i:14656144 original size:64 final size:64
Alignment explanation
Indices: 14656027--14656150 Score: 142
Period size: 64 Copynumber: 1.9 Consensus size: 64
14656017 CATTAAGAGC
* * * ** * *
14656027 CATATATCGGGACGCTCATAAAGAGCTGCGGTATGTCTGCATTATATGCAGGATCTATACTAAT
1 CATATAACAGGACGCTCACAAAGAGCTGCGGTATGTCTGCAACACATGCAGGATCAATACTAAT
* * *
14656091 CATATAACAGGACGCTTACAAAGAGCTGCGGTATAT-TCGCAACACATGTAGGATCAATAC
1 CATATAACAGGACGCTCACAAAGAGCTGCGGTATGTCT-GCAACACATGCAGGATCAATAC
14656151 CGATTGGGAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
63 1 0.02
64 48 0.98
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (64 bp):
CATATAACAGGACGCTCACAAAGAGCTGCGGTATGTCTGCAACACATGCAGGATCAATACTAAT
Found at i:14658464 original size:12 final size:12
Alignment explanation
Indices: 14658449--14658480 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
14658439 TTTTCTCAAT
14658449 TTTTCCTTCCCA
1 TTTTCCTTCCCA
14658461 TTTTCCTTCCCA
1 TTTTCCTTCCCA
14658473 TTTTCCTT
1 TTTTCCTT
14658481 TTTGTTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTCCTTCCCA
Found at i:14675037 original size:64 final size:64
Alignment explanation
Indices: 14674919--14675048 Score: 143
Period size: 64 Copynumber: 2.0 Consensus size: 64
14674909 TCATTAAGAG
* * * * * ** * * *
14674919 TCATATATCGGGACGCTCATAAAGAGTTGCGGTATATCTGCATTATATGTAGGATCCATACCGA
1 TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATACCGA
* * *
14674983 TCATATAACAGGATGCTCACAAAGAGCTGTGGTATATCAGCAACACATGCAGGATCAATACTGA
1 TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATACCGA
14675047 TC
1 TC
14675049 GGGATGCTCG
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (64 bp):
TCATATAACAGGACGCTCACAAAGAGCTGCGGTATATCAGCAACACATGCAGGATCAATACCGA
Found at i:14680943 original size:17 final size:18
Alignment explanation
Indices: 14680921--14680961 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
14680911 AGTTAAAATG
14680921 TAATTT-TATTATTT-TAA
1 TAATTTATATT-TTTATAA
14680938 TAATTTATATTTTTATAA
1 TAATTTATATTTTTATAA
14680956 -AATTTA
1 TAATTTA
14680962 AAAGATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TAATTTATATTTTTATAA
Found at i:14685237 original size:16 final size:17
Alignment explanation
Indices: 14685205--14685237 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14685195 AAATGGCACC
*
14685205 TCAATTCAAACACCAAA
1 TCAATCCAAACACCAAA
14685222 TCAATCCAAA-ACCAAA
1 TCAATCCAAACACCAAA
14685238 GCTATGTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (17 bp):
TCAATCCAAACACCAAA
Found at i:14686032 original size:36 final size:36
Alignment explanation
Indices: 14685917--14686032 Score: 137
Period size: 35 Copynumber: 3.2 Consensus size: 36
14685907 GGTGCCTAAT
* *
14685917 GGATAAATCGTAACAAAGTTTTGCACCCAGCACTAGTC
1 GGATAAATCG--ACAAAGATTTGCACCTAGCACTAGTC
* *
14685955 GGATAAACCGACAATAGATGTGC-CCT-GCACTAGTC
1 GGATAAATCGACAA-AGATTTGCACCTAGCACTAGTC
* *
14685990 GAATAAATCGACAAAGATTTGCACCTAGCGCTAGTC
1 GGATAAATCGACAAAGATTTGCACCTAGCACTAGTC
14686026 GGATAAA
1 GGATAAA
14686033 CTGATAGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
34 7 0.11
35 24 0.36
36 20 0.30
37 6 0.09
38 9 0.14
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (36 bp):
GGATAAATCGACAAAGATTTGCACCTAGCACTAGTC
Found at i:14689153 original size:19 final size:19
Alignment explanation
Indices: 14689115--14689155 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14689105 AAAATTTTAA
* *
14689115 AATATTTTTCATAATGTTT
1 AATATTTTTAATAATATTT
*
14689134 AATATTTTTAATGATATTT
1 AATATTTTTAATAATATTT
14689153 AAT
1 AAT
14689156 TTTGAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
AATATTTTTAATAATATTT
Found at i:14692293 original size:3 final size:3
Alignment explanation
Indices: 14692285--14692310 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14692275 TAATTGATTA
14692285 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
14692311 ATCATTTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:14692826 original size:80 final size:79
Alignment explanation
Indices: 14692699--14692848 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 79
14692689 TGTGATAGAT
* ** * *
14692699 TAAAATTTGTATATACGATTGAATTTAGTCATTGAGTATTAGTTCGATTGGTATGGATATTGTTG
1 TAAAATTTGTATATACAATTGAATTTAGTCATTGAGTATTAACTCGATTGGCATGGACATTGTTG
*
14692764 TCAATGTAAGAGAA
66 CCAATGTAAGAGAA
* * *
14692778 TAAATTTTTTATATACAATTGAATTTGGTCGATTGAGTATTAACTCGATTGGCATGGACATTGTT
1 TAAAATTTGTATATACAATTGAATTTAGTC-ATTGAGTATTAACTCGATTGGCATGGACATTGTT
14692843 GCCAAT
65 GCCAAT
14692849 ACAGGAGGAC
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 26 0.43
80 35 0.57
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (79 bp):
TAAAATTTGTATATACAATTGAATTTAGTCATTGAGTATTAACTCGATTGGCATGGACATTGTTG
CCAATGTAAGAGAA
Found at i:14693739 original size:18 final size:18
Alignment explanation
Indices: 14693716--14693750 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14693706 GAGAAATGCA
14693716 AAAAAAAAAAAAAAGAAT
1 AAAAAAAAAAAAAAGAAT
* *
14693734 AAAAAAGAAAGAAAGAA
1 AAAAAAAAAAAAAAGAA
14693751 AGAAGAAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAAAAAAGAAT
Found at i:14695130 original size:16 final size:16
Alignment explanation
Indices: 14695099--14695132 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14695089 TTCATACATG
*
14695099 TTCAAAACATACCATA
1 TTCAAAACAAACCATA
*
14695115 TTCAAAACAAATCATA
1 TTCAAAACAAACCATA
14695131 TT
1 TT
14695133 ATATAAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (16 bp):
TTCAAAACAAACCATA
Found at i:14702303 original size:4 final size:4
Alignment explanation
Indices: 14702289--14702319 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
14702279 ACAGGCACCC
14702289 ATGG CATGG ATGG ATGG ATGG ATGG ATGG AT
1 ATGG -ATGG ATGG ATGG ATGG ATGG ATGG AT
14702320 TGTTAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.26, C:0.03, G:0.45, T:0.26
Consensus pattern (4 bp):
ATGG
Found at i:14709044 original size:24 final size:23
Alignment explanation
Indices: 14709004--14709048 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
14708994 TCAAAGGTTT
*
14709004 AAAGACCTAAATAGTAAATAAGA
1 AAAGACCAAAATAGTAAATAAGA
*
14709027 AAAGATCCAAAATGGTAAATAA
1 AAAGA-CCAAAATAGTAAATAA
14709049 ACCATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (23 bp):
AAAGACCAAAATAGTAAATAAGA
Found at i:14709683 original size:13 final size:13
Alignment explanation
Indices: 14709665--14709696 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
14709655 CGAGTTAGTA
14709665 AATATTATTTAAT
1 AATATTATTTAAT
14709678 AATATTATTTAAT
1 AATATTATTTAAT
14709691 AATATT
1 AATATT
14709697 TAAGAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATATTATTTAAT
Found at i:14712816 original size:16 final size:16
Alignment explanation
Indices: 14712795--14712828 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14712785 ATTATTTAAT
14712795 AATATCAAAGATTCTC
1 AATATCAAAGATTCTC
*
14712811 AATATCAAATATTCTC
1 AATATCAAAGATTCTC
14712827 AA
1 AA
14712829 CACTCTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (16 bp):
AATATCAAAGATTCTC
Found at i:14721337 original size:43 final size:43
Alignment explanation
Indices: 14721268--14721396 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
14721258 GGCTCGTACA
* * *
14721268 ATGCCAACGTCCCGGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
* *
14721311 ATGCC-ACTGTCCCAGACATGGCCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAAACACATA-TCG
* *
14721354 ATGCCAACATCCCAGACGTGGTCTTACACGAAAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
14721397 GAATCCTATG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 3 0.04
43 67 0.92
44 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
Found at i:14724370 original size:92 final size:92
Alignment explanation
Indices: 14724260--14725024 Score: 1244
Period size: 92 Copynumber: 8.3 Consensus size: 92
14724250 GTTTTATACA
* * * *
14724260 TTGCCGAATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
14724325 CGAAATTGATTTGTATATAAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* *
14724352 TTGTCAAATTGATTCGTATATGATTATACATTTG-TGAAATTTATTTGTATATGGTTATACATTA
1 TTGCCGAATTGATTCGTATATGATTATACA-TTGCTGAAATTTATTTGTATATGGTTATACATTA
*
14724416 TCGAAATTGATTTGTAAATGAAGATAAG
65 TCGAAATTGATTTGTATATGAAGATAAG
* * *
14724444 TTGTCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTACATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
14724509 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
14724536 TTGCCGAATTGATTCGTATATGATTATACTTTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* * *
14724601 CAAAATTTATTTGTATATGAAGATAAA
66 CGAAATTGATTTGTATATGAAGATAAG
* * *
14724628 TTGCTGAATTGATTCGTATATGATTATACTTTGCTGAAATATATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
14724693 CGAAATTGATTTGTAAATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
14724720 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
14724785 CGAAATTGATTTGTAAATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
** ** * *
14724812 TTGTTGAATTGATTCGTATACAATTATACATTGCTAAAATTTATTTGTATATGGTTATGCATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
14724877 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* *
14724904 TTGCCGAATTGATTCGTATATGATTATACTTTGCTAAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
14724969 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
14724996 TTGCCGAATTTGATTCGTATATGAATATA
1 TTGCCGAA-TTGATTCGTATATGATTATA
14725025 TATATTGTTG
Statistics
Matches: 628, Mismatches: 42, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
91 3 0.00
92 603 0.96
93 22 0.04
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (92 bp):
TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:14724824 original size:30 final size:31
Alignment explanation
Indices: 14724325--14725020 Score: 222
Period size: 31 Copynumber: 22.7 Consensus size: 31
14724315 TATATATTAT
* * *
14724325 CGAAATTGATTTGTATATAAAGATA-AGTTGT
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * **
14724356 C-AAATTGATTCGTATATGATTATACATTTG-
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * * *** **
14724386 TGAAATTTATTTGTATATGGTTATACATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
*
14724417 CGAAATTGATTTGTAAATGAAGATA-AGTTGT
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * *
14724448 CG-AATTGATTCGTATAT-AATTATACATTGC
1 CGAAATTGATTTGTAAATGAA-GATACATTGC
* * * *** **
14724478 TGAAATTTATTTGTACATGGTTATACATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
*
14724509 CGAAATTGATTTGTATATGAAGATA-AGTTGC
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * ** *
14724540 CG-AATTGATTCGTATATGATTATACTTTGC
1 CGAAATTGATTTGTAAATGAAGATACATTGC
* * * *** **
14724570 TGAAATTTATTTGTATATGGTTATACATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
* * * *
14724601 CAAAATTTATTTGTATATGAAGATAAATTGC
1 CGAAATTGATTTGTAAATGAAGATACATTGC
* * * ** *
14724632 TG-AATTGATTCGTATATGATTATACTTTGC
1 CGAAATTGATTTGTAAATGAAGATACATTGC
* * *** **
14724662 TGAAATAT-ATTTGTATATGGTTATACATTAT
1 CGAAAT-TGATTTGTAAATGAAGATACATTGC
14724693 CGAAATTGATTTGTAAATGAAGATA-AGTTGC
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * **
14724724 CG-AATTGATTCGTATATGATTATACATTGC
1 CGAAATTGATTTGTAAATGAAGATACATTGC
* * * *** **
14724754 TGAAATTTATTTGTATATGGTTATACATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
*
14724785 CGAAATTGATTTGTAAATGAAGATA-AGTTGT
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * * * *
14724816 TG-AATTGATTCGTATA-CAATTATACATTGC
1 CGAAATTGATTTGTAAATGAA-GATACATTGC
** * * *** * **
14724846 TAAAATTTATTTGTATATGGTTATGCATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
*
14724877 CGAAATTGATTTGTATATGAAGATA-AGTTGC
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * ** *
14724908 CG-AATTGATTCGTATATGATTATACTTTGC
1 CGAAATTGATTTGTAAATGAAGATACATTGC
** * * *** **
14724938 TAAAATTTATTTGTATATGGTTATACATTAT
1 CGAAATTGATTTGTAAATGAAGATACATTGC
*
14724969 CGAAATTGATTTGTATATGAAGATA-AGTTGC
1 CGAAATTGATTTGTAAATGAAGATACA-TTGC
* * *
14725000 CGAATTTGATTCGTATATGAA
1 CGAAATTGATTTGTAAATGAA
14725021 TATATATATT
Statistics
Matches: 500, Mismatches: 139, Indels: 52
0.72 0.20 0.08
Matches are distributed among these distances:
29 4 0.01
30 161 0.32
31 334 0.67
32 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.43
Consensus pattern (31 bp):
CGAAATTGATTTGTAAATGAAGATACATTGC
Found at i:14725228 original size:43 final size:41
Alignment explanation
Indices: 14725167--14725283 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 41
14725157 TATGTGATCT
14725167 CGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTAAGAAAA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAA-TAAG-AAA
* * * **
14725210 CGTGTAAGACCATGTCTGGGACATGGGCATCGTATATGATT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGAATAAGAAA
* * *
14725251 CGTATAAGACCCTGTCTGGGACAGTGGCATCGA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGA
14725284 TATGCGTTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 29 0.45
42 3 0.05
43 32 0.50
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGAATAAGAAA
Found at i:14727643 original size:15 final size:15
Alignment explanation
Indices: 14727623--14727659 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
14727613 CAGACTGTGA
14727623 TTGCTTTCTATTTGT
1 TTGCTTTCTATTTGT
14727638 TTGCTTTCTATTTGT
1 TTGCTTTCTATTTGT
14727653 TTGCTTT
1 TTGCTTT
14727660 ATATGGGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.14, G:0.14, T:0.68
Consensus pattern (15 bp):
TTGCTTTCTATTTGT
Found at i:14731646 original size:23 final size:23
Alignment explanation
Indices: 14731617--14731715 Score: 135
Period size: 23 Copynumber: 4.3 Consensus size: 23
14731607 ATAAGTGCCA
*
14731617 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14731640 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14731663 CACTGAAATGTTGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14731686 CACTGATATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14731709 CACTGAT
1 CACTGAT
14731716 CAATAACACT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14731684 original size:46 final size:46
Alignment explanation
Indices: 14731617--14731714 Score: 151
Period size: 46 Copynumber: 2.1 Consensus size: 46
14731607 ATAAGTGCCA
* *
14731617 CACTGATATGTAGCTGAAGCTACCACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
* * *
14731663 CACTGAAATGTTGCCGAAGCTACCACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
14731709 CACTGA
1 CACTGA
14731715 TCAATAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCTAC
Found at i:14735615 original size:24 final size:24
Alignment explanation
Indices: 14735583--14735629 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14735573 CTAAATTTAT
*
14735583 AACACTTTCCTTTC-CTTTCTCTTC
1 AACACTTTCC-ATCACTTTCTCTTC
*
14735607 AACATTTTCCATCACTTTCTCTT
1 AACACTTTCCATCACTTTCTCTT
14735630 ATTTCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (24 bp):
AACACTTTCCATCACTTTCTCTTC
Found at i:14738327 original size:11 final size:13
Alignment explanation
Indices: 14738311--14738344 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
14738301 AATTTCATGA
14738311 AAAAATTTCG-T-
1 AAAAATTTCGTTC
14738322 AAAAATTTCGTTC
1 AAAAATTTCGTTC
14738335 AAAAATTTCG
1 AAAAATTTCG
14738345 ACGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (13 bp):
AAAAATTTCGTTC
Found at i:14739723 original size:102 final size:101
Alignment explanation
Indices: 14739547--14739890 Score: 424
Period size: 102 Copynumber: 3.4 Consensus size: 101
14739537 TATCGATGAA
* * * *
14739547 CACGTGTATTGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTCACATGTG-ATGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTA-GTA
* *
14739611 CTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
65 CTAAGTGAAGGCTACTATGTGTACCGA-AAACTTTGGT
* *
14739649 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
14739714 TAAGTGAAGGCTACTATGTGTACCGAAAATTTTTTGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAA-CTTTGGT
* *** * *
14739751 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * *
14739815 TATGTAAAGGCTACTACGTGAACCGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAACTTTGGT
* *
14739851 CACGTGTGTAGTACAATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
14739891 ATGATAAAAG
Statistics
Matches: 212, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
100 39 0.18
101 43 0.20
102 129 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAACTTTGGT
Found at i:14739817 original size:50 final size:50
Alignment explanation
Indices: 14739547--14739884 Score: 322
Period size: 51 Copynumber: 6.7 Consensus size: 50
14739537 TATCGATGAA
* * * * * ***
14739547 CACGTGTATTGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * *
14739598 CACATGTG-ATGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTA-GTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGT
* * * ***
14739649 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * *
14739700 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAATTTTTTGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA--CTTGGT
*
14739751 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
* *
14739801 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
14739851 CACGTGTGTAGTACAATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
14739885 TATCGAATGA
Statistics
Matches: 235, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
49 4 0.02
50 86 0.37
51 137 0.58
52 7 0.03
53 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:14741730 original size:18 final size:18
Alignment explanation
Indices: 14741709--14741744 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14741699 TGAACATATA
*
14741709 ATTGTATTTGGTTGAAAT
1 ATTGAATTTGGTTGAAAT
*
14741727 ATTGAATTTGTTTGAAAT
1 ATTGAATTTGGTTGAAAT
14741745 TGTGTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (18 bp):
ATTGAATTTGGTTGAAAT
Found at i:14742149 original size:16 final size:16
Alignment explanation
Indices: 14742120--14742153 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14742110 ACTATTTAAT
14742120 AATATAAAAAATTCTC
1 AATATAAAAAATTCTC
* *
14742136 AATATCAAAGATTCTC
1 AATATAAAAAATTCTC
14742152 AA
1 AA
14742154 CTAACTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (16 bp):
AATATAAAAAATTCTC
Found at i:14744210 original size:45 final size:42
Alignment explanation
Indices: 14744136--14744258 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 42
14744126 ATATGTGTTC
* **
14744136 TCGTGTAAGACCACGTCTGGGATGATGGCATCGATATATGTAAT
1 TCGTGTAAGACCATGTCTGGGACAATGGCATCGATAT-T-TAAT
* ** *
14744180 TACGTGTAAGACCATGTCTAGGACCTTGGCATCG-TATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACAATGGCATCGATATTTAAT
* * *
14744222 TCGTGTAAAACCCTGTCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCATGTCTGGGACAATGGCATCGATAT
14744259 GAGATAGCAT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 27 0.41
42 7 0.11
43 1 0.02
44 4 0.06
45 27 0.41
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAATGGCATCGATATTTAAT
Found at i:14748531 original size:19 final size:20
Alignment explanation
Indices: 14748499--14748538 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14748489 TAATTTTTTT
* *
14748499 TTAAATTATTTAAAT-TTAA
1 TTAAAATATATAAATATTAA
14748518 TTAAAATATATAAATATTAA
1 TTAAAATATATAAATATTAA
14748538 T
1 T
14748539 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAAAATATATAAATATTAA
Found at i:14749597 original size:20 final size:20
Alignment explanation
Indices: 14749557--14749606 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
14749547 TTTCCTATAA
14749557 TTATAA-TTTCAAAACATATT
1 TTATAATTTTCAAAACATA-T
*
14749577 TTATAATTTTGAAAACA-AT
1 TTATAATTTTCAAAACATAT
14749596 TTATGAATTTT
1 TTAT-AATTTT
14749607 AAGATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 5 0.19
20 13 0.48
21 9 0.33
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (20 bp):
TTATAATTTTCAAAACATAT
Found at i:14749624 original size:28 final size:31
Alignment explanation
Indices: 14749593--14749649 Score: 84
Period size: 28 Copynumber: 1.9 Consensus size: 31
14749583 TTTTGAAAAC
14749593 AATTTATGA-A-TTTTAA-GATTTTTTAATA
1 AATTTATGATATTTTTAATGATTTTTTAATA
*
14749621 AATTTATGATATTTTTAATTATTTTTTAA
1 AATTTATGATATTTTTAATGATTTTTTAA
14749650 CCATGGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 1 0.04
30 6 0.24
31 9 0.36
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (31 bp):
AATTTATGATATTTTTAATGATTTTTTAATA
Found at i:14753091 original size:23 final size:23
Alignment explanation
Indices: 14753054--14753098 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14753044 TGCCCATATC
* *
14753054 TCTACTAGTATTAAATCATTTAT
1 TCTACTACTACTAAATCATTTAT
*
14753077 TCTACTACTACTAAATCTTTTA
1 TCTACTACTACTAAATCATTTA
14753099 GGGTGTGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.02, T:0.47
Consensus pattern (23 bp):
TCTACTACTACTAAATCATTTAT
Found at i:14756799 original size:13 final size:13
Alignment explanation
Indices: 14756781--14756811 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
14756771 CATTATTCCC
14756781 TTTCTCTATAATA
1 TTTCTCTATAATA
14756794 TTTCTCTATAATA
1 TTTCTCTATAATA
14756807 TTTCT
1 TTTCT
14756812 TATTCCCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.16, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTCTCTATAATA
Found at i:14761723 original size:45 final size:45
Alignment explanation
Indices: 14761664--14761754 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
14761654 TATATCACTC
* * *
14761664 TTATTATTCTCCATATTATCATTTATATTGTTATTATTCTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
* * * *
14761709 TTATTGTTCCCCATATTATTATTTGTACTCTTATTATTGTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
14761754 T
1 T
14761755 CATGCATGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.20, C:0.14, G:0.07, T:0.59
Consensus pattern (45 bp):
TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
Found at i:14762156 original size:126 final size:126
Alignment explanation
Indices: 14761968--14762303 Score: 527
Period size: 126 Copynumber: 2.7 Consensus size: 126
14761958 TCAAAAGGGT
**
14761968 AAAATTTCGAAAAT-AAGGCAATATTTTATATTTTAG-AAATTCGAGAAATTGTACCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTA-TTTAGAAAATTCGAGAAATTGTACCCTAACTTA
*
14762031 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCTTTTTAAATTTCCAAA-AGTA
65 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACA-TA
14762093 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
*
14762158 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGCAAAATATCCTTTTAAATTTCCAAACATA
66 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACATA
* * *
14762219 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAAATCGTGCCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAG-AAATTGTACCCTAACTTA
*
14762284 CTGAG-CTTCGATTTTTCTCG
65 CTGGGTC-TCGA-TTTTCTCG
14762304 CGTTGATCCT
Statistics
Matches: 197, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
125 19 0.10
126 145 0.74
127 25 0.13
128 8 0.04
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (126 bp):
AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACATA
Found at i:14763913 original size:21 final size:20
Alignment explanation
Indices: 14763884--14763950 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
14763874 TCTTTTTGCA
14763884 TTCA-TGCATGTGCATTACAT
1 TTCATTGCAT-TGCATTACAT
*
14763904 TTCATTGCA-TGCA-T-CTT
1 TTCATTGCATTGCATTACAT
*
14763921 TTCATT-CATTAACATTACAT
1 TTCATTGCATT-GCATTACAT
14763941 TTCATTGCAT
1 TTCATTGCAT
14763951 ACAATAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
16 2 0.05
17 9 0.24
18 3 0.08
19 5 0.13
20 12 0.32
21 7 0.18
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.45
Consensus pattern (20 bp):
TTCATTGCATTGCATTACAT
Found at i:14765773 original size:8 final size:7
Alignment explanation
Indices: 14765724--14765773 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
14765714 AAAAAAATGG
14765724 AAAGAAA
1 AAAGAAA
14765731 AAAGAAA
1 AAAGAAA
*
14765738 AAACAAA
1 AAAGAAA
*
14765745 AGA-AAA
1 AAAGAAA
14765751 AAAGAAA
1 AAAGAAA
*
14765758 AAACAAA
1 AAAGAAA
*
14765765 ATAGAAA
1 AAAGAAA
14765772 AA
1 AA
14765774 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:14765774 original size:20 final size:20
Alignment explanation
Indices: 14765724--14765765 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
14765714 AAAAAAATGG
14765724 AAAG-AAAAAAGAAAAAACA
1 AAAGAAAAAAAGAAAAAACA
14765743 AAAGAAAAAAAGAAAAAACA
1 AAAGAAAAAAAGAAAAAACA
14765763 AAA
1 AAA
14765766 TAGAAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.86, C:0.05, G:0.10, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAAAGAAAAAACA
Found at i:14766301 original size:108 final size:108
Alignment explanation
Indices: 14766112--14766307 Score: 295
Period size: 108 Copynumber: 1.8 Consensus size: 108
14766102 TTTGTATTCT
*
14766112 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
14766177 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * * ** *
14766220 AGCAAATTTTGCTATCTTGGTTGATTTATTTGTTTAGAGCTTTGCTCTCGACAAAATTT-CATCT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAAC-AAATTTCCATCT
* *
14766284 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
14766308 AGCATTTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 72 0.92
109 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.46
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:14766982 original size:88 final size:88
Alignment explanation
Indices: 14766731--14767134 Score: 553
Period size: 88 Copynumber: 4.6 Consensus size: 88
14766721 CCCTAGAGAA
* * * ** * ** *
14766731 CAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
14766796 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * *
14766819 CAGATCGAAAACA-AAACCTTGCCTC-CATTGGTTGCAGTGGAGCTGGTTAAAGA-AACAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCT
*
14766881 TGCCTTCCTGCATTAATAGCGAAG
65 TGCCTTCCTGCATTAACAGCGAAG
*
14766905 CAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
14766970 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * *
14766993 CAAATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAACGGAGCTGGTTGAAGACAATAAATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
*
14767058 GCCTTCCTGCATTAACAGTGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * *
14767081 CAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAGA
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
14767135 CATCAAGTCT
Statistics
Matches: 288, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
86 44 0.15
87 67 0.23
88 177 0.61
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (88 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
GCCTTCCTGCATTAACAGCGAAG
Found at i:14767015 original size:44 final size:44
Alignment explanation
Indices: 14766731--14767101 Score: 163
Period size: 44 Copynumber: 8.5 Consensus size: 44
14766721 CCCTAGAGAA
* * * * * *
14766731 CAGATCGAAGACACAAGCCTTGCCTCCCT-CGTTTACAGTGGAG
1 CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * * * * *
14766774 CTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAG
1 CAGATCGAAGACA-CAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * * * *
14766819 CAGATCGAAAACA-AAACCTTGCC-TCCATTG-GTT-GCAGTGGAG
1 CAGATCGAAGACACAAACCTTGCCTTCC--TGCATTAACAGCGAAG
* * ** * * * *
14766861 CTGGTTAAAGAAACAGATCTTGCCTTCCTGCATTAATAGCGAAG
1 CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * ** *
14766905 CAGATCGAATACACAAACCTTGCC-TCTCT-CGGTT-GTAGCGGAG
1 CAGATCGAAGACACAAACCTTGCCTTC-CTGC-ATTAACAGCGAAG
* * * * * *
14766948 CTGGTTGAAGATAACAGATCTTGCCTTCCTGCATTAACAGCGAAG
1 CAGATCGAAGA-CACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* **
14766993 CAAATCGAAGACACAAACCTTGCC-TCTCTCGGTTGTAAC-G-G-AG
1 CAGATCGAAGACACAAACCTTGCCTTC-CT-GCAT-TAACAGCGAAG
* * * * * *
14767036 CTGGTTGAAGACAATAAATCTTGCCTTCCTGCATTAACAGTGAAG
1 CAGATCGAAGAC-ACAAACCTTGCCTTCCTGCATTAACAGCGAAG
14767081 CAGATCGAAGACACAAACCTT
1 CAGATCGAAGACACAAACCTT
14767102 ACCTCTCTCA
Statistics
Matches: 226, Mismatches: 80, Indels: 43
0.65 0.23 0.12
Matches are distributed among these distances:
42 22 0.10
43 61 0.27
44 89 0.39
45 50 0.22
46 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (44 bp):
CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
Found at i:14767109 original size:176 final size:174
Alignment explanation
Indices: 14766731--14767134 Score: 558
Period size: 174 Copynumber: 2.3 Consensus size: 174
14766721 CCCTAGAGAA
* * * ** * ** *
14766731 CAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
* * **
14766796 GCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTCCATTGGTTGCAGTGGAG
66 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGGAG
* *
14766861 CTGGTTAAAGAAACAGATCTTGCCTTCCTGCATTAATAGCGAAG
131 CTGGTTAAAGAAACAAATCTTGCCTTCCTGCATTAACAGCGAAG
*
14766905 CAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
* *
14766970 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAACGG
66 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACA-AAACCTTGCCTC-CATCGGTTGCAACGG
* * *
14767034 AGCTGGTTGAAGACAATAAATCTTGCCTTCCTGCATTAACAGTGAAG
129 AGCTGGTTAAAGA-AACAAATCTTGCCTTCCTGCATTAACAGCGAAG
* * *
14767081 CAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAGA
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
14767135 CATCAAGTCT
Statistics
Matches: 202, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
174 89 0.44
175 33 0.16
176 80 0.40
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (174 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGGAG
CTGGTTAAAGAAACAAATCTTGCCTTCCTGCATTAACAGCGAAG
Found at i:14767136 original size:43 final size:43
Alignment explanation
Indices: 14766915--14767136 Score: 136
Period size: 44 Copynumber: 5.1 Consensus size: 43
14766905 CAGATCGAAT
* *
14766915 ACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
* * * *** *
14766958 ATAACAGATCTTGCCT-TCCTGCA--T-TAACAGCGAAGCAAATCGAAG
1 A-CACAAACCTTGCCTCT-CT-CAGTTGTAAC-G-G-AGCTGGTTGAAG
*
14767003 ACACAAACCTTGCCTCTCTCGGTTGTAACGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
* * * * *
14767046 ACAATAAATCTTGCCT-TCCTGCA--T-TAACAGTGAAGCAGATCGAAG
1 AC-ACAAACCTTGCCTCT-CT-CAGTTGTAAC-G-G-AGCTGGTTGAAG
*
14767091 ACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
14767134 ACA
1 ACA
14767137 TCAAGTCTTA
Statistics
Matches: 130, Mismatches: 29, Indels: 40
0.65 0.15 0.20
Matches are distributed among these distances:
42 7 0.05
43 32 0.25
44 55 0.42
45 28 0.22
46 8 0.06
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (43 bp):
ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
Found at i:14767231 original size:84 final size:84
Alignment explanation
Indices: 14767134--14768462 Score: 1788
Period size: 84 Copynumber: 15.8 Consensus size: 84
14767124 CTGGTTGAAG
* *
14767134 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGATGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
14767199 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
14767218 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767283 AGCAGTAGTCGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
14767302 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
14767367 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
14767386 ACATCAAGTCTTATCTCCCT-AGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
14767450 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
14767469 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAACAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767534 AGCAGTAGTCGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
14767553 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
14767618 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
* *
14767637 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATATCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
14767702 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
* *
14767721 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCACAGATCTTATCTCCC
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAA-C-CAGATCTTATCTCCC
14767786 TAAGCAGTAGTGGAGCAGATC
64 TAAGCAGTAGTGGAGCAGATC
*
14767807 ACATCAAGTCTTATCTCCCTGAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767872 AGTAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
14767891 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767956 AGCAGTAGTGGAACAGATC
66 AGCAGTAGTGGAGCAGATC
* * *
14767975 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGGGCAGACGAAAAAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14768040 AGCAGTAGTGGGGCAGATC
66 AGCAGTAGTGGAGCAGATC
* * *
14768059 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCT
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCT
*
14768119 AAGAAGTAGTGGAGCAGA-C
65 AAGCAGTAGTGGAGCAGATC
* * * * * * *
14768138 GAAAGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATC----GCATCAAG-TCTTATC
1 ---A-CATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATC
*
14768198 TCCCTAAGAAGTAGTGGAGCAGA-C
60 TCCCTAAGCAGTAGTGGAGCAGATC
* * * *
14768222 AAAAGAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATCCAG-TCTTA
1 -----ACATCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTA
14768282 TCTCCCTAAGCAGTAGTGGAGCAGA-C
58 TCTCCCTAAGCAGTAGTGGAGCAGATC
* ** * * ** *
14768308 AGAAAAAAAAATCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCTGA-TTAA-AATCACAGATCT
1 --------ACATCAAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAGAAAC-CAGATCT
* * * *
14768370 TATCTCTCTGAAGTTA-CAGTAGAGCAGATC
56 TATCTCCCT-AAG-CAGTAGTGGAGCAGATC
* *
14768400 ACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAACCA-ATCCTATCTCCCT
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCT
14768463 GAAGTTATAG
Statistics
Matches: 1150, Mismatches: 66, Indels: 58
0.90 0.05 0.05
Matches are distributed among these distances:
79 1 0.00
80 28 0.02
81 4 0.00
82 2 0.00
83 86 0.07
84 784 0.68
85 22 0.02
86 167 0.15
87 14 0.01
88 4 0.00
89 12 0.01
90 11 0.01
91 13 0.01
92 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (84 bp):
ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGATC
Found at i:14767942 original size:338 final size:336
Alignment explanation
Indices: 14767134--14768462 Score: 1788
Period size: 338 Copynumber: 3.9 Consensus size: 336
14767124 CTGGTTGAAG
* *
14767134 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGATGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767199 AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAA
66 AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
* *
14767264 ACCAGATCTTATCTCCCTAAGCAGTAGTCGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGT
131 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
14767329 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
196 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
*
14767394 TCTTATCTCCCT-AGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAG
261 TCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCAGATCTTATCTCCCTAAGCAGTAG
14767458 TGGAGCAGATC
326 TGGAGCAGATC
*
14767469 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAACAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767534 AGCAGTAGTCGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
66 AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
14767599 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
131 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
*
14767664 AGTGGAGCAGACGAAAGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
196 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
14767729 TCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCACAGATCTTATCTCCCTAAGCAGT
261 TCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAA-C-CAGATCTTATCTCCCTAAGCAGT
14767794 AGTGGAGCAGATC
324 AGTGGAGCAGATC
*
14767807 ACATCAAGTCTTATCTCCCTGAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
14767872 AGTAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
66 AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
*
14767937 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCACATCAAGTCTTATCTCCCTAAGAAGT
131 ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
* * *
14768002 AGTGGGGCAGACGAAAAAAACCAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCACATCAAG
196 AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
* * * * *
14768067 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGAAGTA
261 TCTTATCTCCCTAAGAAGTAGTGGAGCAGA-CAAAAGAAACCAGATCTTATCTCCCTAAGCAGTA
14768127 GTGGAGCAGA-C
325 GTGGAGCAGATC
* * * * * * *
14768138 GAAAGAAACCAGATCTTATATCCCTAAGCAGTAGTGGAGCAGATC----GCATCAAG-TCTTATC
1 ---A-CATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATC
* * * *
14768198 TCCCTAAGAAGTAGTGGAGCAGA-CAAAAGAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGA
60 TCCCTAAGCAGTAGTGGAGCAGATC-----ACATCA-AG-TCTTATCTCCCTAAGAAGTAGTGGA
* * *
14768262 GCAGATC----GCATCCAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAAAAAAAATC
118 GCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC--------ACATC
** * * ** * *
14768321 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCTGA-TTAA-AATCACAGATCTTATCTCTCTGAAG
174 AAGTCTTATCTCCCT-AAGAAGTAGTGGAGCAGACGAAAGAAAC-CAGATCTTATCTCCCT-AAG
* * * * * *
14768383 TTA-CAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAA
236 -CAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAA
*
14768447 CCA-ATCCTATCTCCCT
300 CCAGATCTTATCTCCCT
14768463 GAAGTTATAG
Statistics
Matches: 902, Mismatches: 57, Indels: 61
0.88 0.06 0.06
Matches are distributed among these distances:
331 2 0.00
332 58 0.06
333 8 0.01
334 31 0.03
335 275 0.30
336 58 0.06
337 4 0.00
338 345 0.38
339 5 0.01
340 30 0.03
341 70 0.08
342 1 0.00
343 1 0.00
344 14 0.02
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (336 bp):
ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAA
ACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGT
AGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
TCTTATCTCCCTAAGAAGTAGTGGAGCAGACAAAAGAAACCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATC
Found at i:14768282 original size:86 final size:85
Alignment explanation
Indices: 14768067--14768334 Score: 432
Period size: 86 Copynumber: 3.1 Consensus size: 85
14768057 TCACATCAAG
*
14768067 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
*
14768132 GCAGACGAAAGAAAC-CAGA
66 GCAGACAAAAGAAACACAGA
*
14768151 TCTTATATCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
14768216 GCAGACAAAAGAAACCACAGA
66 GCAGACAAAAGAAA-CACAGA
* *
14768237 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
* *
14768302 GCAGACAGAAAAAAAAATCA-A
66 GCAGACA-AAAGAAACA-CAGA
14768323 TCTTATCTCCCT
1 TCTTATCTCCCT
14768335 GAAGTTGCAG
Statistics
Matches: 172, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
84 76 0.44
85 1 0.01
86 87 0.51
87 8 0.05
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (85 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGA
GCAGACAAAAGAAACACAGA
Found at i:14768373 original size:44 final size:42
Alignment explanation
Indices: 14768315--14768419 Score: 117
Period size: 44 Copynumber: 2.5 Consensus size: 42
14768305 GACAGAAAAA
* * *
14768315 AAAATC-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCTGATT
1 AAAATCAAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGA-T
*
14768356 AAAATCACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGAT
1 AAAATCA-AGATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
* *
14768399 CACATCAAG-TCTTATCTCCCT
1 AAAATCAAGATCTTATCTCCCT
14768420 AAGCAGTAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 17 0.31
42 2 0.04
43 7 0.13
44 28 0.52
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
AAAATCAAGATCTTATCTCCCTGAAGTTACAGTAGAGCAGAT
Found at i:14768419 original size:131 final size:128
Alignment explanation
Indices: 14768260--14768497 Score: 350
Period size: 128 Copynumber: 1.8 Consensus size: 128
14768250 AGCAGTAGTG
* * * *
14768260 GAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAAAATCAATC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGAC-G--AAAAAAACCAATC
* * * * *
14768325 TTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGT
63 CTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGT
14768390 A
128 A
*
14768391 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAGAAACCAATCCTA
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAACCAATCCTA
*
14768456 TCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAAATCT
66 TCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCT
14768498 CACCCCTATG
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
128 50 0.52
130 1 0.01
131 45 0.47
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (128 bp):
GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAACCAATCCTA
TCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTTATCTCTCTGAAGTTACAGTA
Found at i:14768518 original size:128 final size:130
Alignment explanation
Indices: 14768260--14768526 Score: 349
Period size: 128 Copynumber: 2.1 Consensus size: 130
14768250 AGCAGTAGTG
* * * *
14768260 GAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAAAATCAATC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAG-AAAAAAAACCAATC
* * * * * * * * *
14768325 TTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGT
65 CTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGT
14768390 A
130 A
*
14768391 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGAC-G-AAAGAAACCAATCC
1 GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAAACCAATCC
* * *
14768454 TATCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGGAGTTGCAGTA
66 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGTA
*
14768519 GAGTAGAT
1 GAGCAGAT
14768527 TGAAGCTACA
Statistics
Matches: 118, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
128 72 0.61
130 1 0.01
131 45 0.38
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (130 bp):
GAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAAACCAATCC
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCACCCCTATGAAGTTACAGTA
Found at i:14770154 original size:45 final size:45
Alignment explanation
Indices: 14770095--14770185 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
14770085 TATATCACTC
* * *
14770095 TTATTATTCTCCATATTATCATTTATATTGTTATTATTCTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
* * * *
14770140 TTATTGTTCCCCATATTATTATTTGTACTCTTATTATTGTCTTTG
1 TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
14770185 T
1 T
14770186 CATGCATGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.20, C:0.14, G:0.07, T:0.59
Consensus pattern (45 bp):
TTATTATTCCCCATATTATCATTTATACTCTTATTATTCTCTTTG
Found at i:14770586 original size:126 final size:126
Alignment explanation
Indices: 14770398--14770733 Score: 527
Period size: 126 Copynumber: 2.7 Consensus size: 126
14770388 TCAAAAGGGT
*
14770398 AAAATTTCGAAAAT-AAGGCAATATTTTGTATTTTAG-AAATTCGAGAAATTGTACCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTA-TTTAGAAAATTCGAGAAATTGTACCCTAACTTA
*
14770461 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCTTTTTAAATTTCCAAA-AGTA
65 CTGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACA-TA
14770523 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
* *
14770588 TGGGTCTCGATTTTCTCATTAAACCTAAATAGCAAAATATCCTTTTAAATTTCCAAACATA
66 TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACATA
* * *
14770649 AAAATTTTGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAAATCGTGCCCTAACTTA
1 AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAG-AAATTGTACCCTAACTTA
*
14770714 CTGAG-CTTCGATTTTTCTCG
65 CTGGGTC-TCGA-TTTTCTCG
14770734 CGTTGATCCT
Statistics
Matches: 196, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
125 19 0.10
126 145 0.74
127 25 0.13
128 7 0.04
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (126 bp):
AAAATTTCGAAAATAAAGGCAATATTTCGTATTTAGAAAATTCGAGAAATTGTACCCTAACTTAC
TGGGTCTCGATTTTCTCGTTAAACCTAAATAGAAAAATATCCTTTTAAATTTCCAAACATA
Found at i:14772155 original size:24 final size:23
Alignment explanation
Indices: 14772103--14772157 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 23
14772093 CGGAAGGGTG
14772103 GAAATTTAAAACTATATTTTTAT
1 GAAATTTAAAACTATATTTTTAT
14772126 GAAATTTAAAA-TATAATTTTTAT
1 GAAATTTAAAACTAT-ATTTTTAT
*
14772149 TATAATTTA
1 GA-AATTTA
14772158 CAAGTATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 3 0.10
23 20 0.69
24 6 0.21
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (23 bp):
GAAATTTAAAACTATATTTTTAT
Found at i:14773532 original size:23 final size:23
Alignment explanation
Indices: 14773502--14773548 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
14773492 TGGGTTTTTT
*
14773502 TACTAAAATATTATA-AAAATAAA
1 TACTAAAATAATATACAAAA-AAA
14773525 TACTAAAATAATATACAAAAAAA
1 TACTAAAATAATATACAAAAAAA
14773548 T
1 T
14773549 TTATTTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (23 bp):
TACTAAAATAATATACAAAAAAA
Found at i:14773638 original size:27 final size:27
Alignment explanation
Indices: 14773608--14773673 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
14773598 GGCCTGCCAC
14773608 AGGCGGCACCAATGGTGCCTGTGGCAG
1 AGGCGGCACCAATGGTGCCTGTGGCAG
14773635 AGGCGGCACCAATGGTGCCTGTGGCAG
1 AGGCGGCACCAATGGTGCCTGTGGCAG
14773662 AGGCGGCACCAA
1 AGGCGGCACCAA
14773674 CATGTTCGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.21, C:0.27, G:0.39, T:0.12
Consensus pattern (27 bp):
AGGCGGCACCAATGGTGCCTGTGGCAG
Found at i:14774082 original size:139 final size:139
Alignment explanation
Indices: 14773927--14774290 Score: 423
Period size: 149 Copynumber: 2.5 Consensus size: 139
14773917 ATGTACTAAA
*
14773927 ATAATGTA--AAATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGGAAA
1 ATAATGTACTAAATAATAAAATTAGAAAATAATATATTTTTT-AAAGTAATAAAATCCGGGGAAA
* * * *
14773990 AATACGAACAAAGGGCCGAAATAATAGTTTTTTTTAAATTT-ATTTAAAAAATACAGTAAATTAA
65 AATACGAACAAAGGGCCGAAATAA-AGTTTTTTTTAAATTTCA-ATAAAAAACACACTAAATGAA
14774054 TACATTTCAAAC
128 TACATTTCAAAC
* *
14774066 ATAATGTACTAAAATAATGTAAAATAATAAAACTAGAAAATAGTATTTTGTTTAAAGTAATAAAA
1 ATAATGTACT-AAATAA--TAAAAT--TAGAA--A-ATAATA-TA-TTT-TTTAAAGTAATAAAA
** *
14774131 TTTGGGGAAAAA-ACGAACAAAGGGCCGAAATAAGGTTTTTTTTAAATTTCAATAAAAAACACAC
55 TCCGGGGAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTTTAAATTTCAATAAAAAACACAC
*
14774195 TAAATGAATACATTTCAAAT
120 TAAATGAATACATTTCAAAC
* *
14774215 ATAATGTACTAAAATAATAAAACTAGAAAATAGTAT-TATTTTTAAAGTAATAAAATCCGGGGAA
1 ATAATGTACT-AAATAATAAAATTAGAAAATAATATAT-TTTTTAAAGTAATAAAATCCGGGG-A
14774279 AAAATACGAACA
63 AAAATACGAACA
14774291 TGGCTGAAAT
Statistics
Matches: 191, Mismatches: 17, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
139 29 0.15
140 7 0.04
141 8 0.04
142 10 0.05
143 1 0.01
144 6 0.03
145 4 0.02
146 4 0.02
147 5 0.03
148 1 0.01
149 64 0.34
150 24 0.13
151 25 0.13
152 3 0.02
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (139 bp):
ATAATGTACTAAATAATAAAATTAGAAAATAATATATTTTTTAAAGTAATAAAATCCGGGGAAAA
ATACGAACAAAGGGCCGAAATAAAGTTTTTTTTAAATTTCAATAAAAAACACACTAAATGAATAC
ATTTCAAAC
Found at i:14774092 original size:152 final size:148
Alignment explanation
Indices: 14773817--14774290 Score: 641
Period size: 152 Copynumber: 3.2 Consensus size: 148
14773807 TTTTTTATTG
* ** *
14773817 AAAGTAATAAAATTCGGTAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTT-AATTTAT
1 AAAGTAATAAAATCCGG-GGAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTTAAATTTAT
14773881 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
65 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
14773946 TTAGAAAATATTATATTTTTT
130 -TAGAAAATA-TATATTTTTT
*
14773967 AAAAGTAATAAAATCCGGGGAAAAATACGAACAAAGGGCCGAAATAATAGTTTTTTTTAAATTTA
1 -AAAGTAATAAAATCCGGGGAAAAATACGAACAAAGGGCCGAAATAA-GGTTTTTTTTAAATTTA
* * *
14774032 TTTAAAAAATACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
64 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
14774097 ACTAGAAAATAGTAT-TTTGTTT
129 A-TAGAAAATA-TATATTT-TTT
**
14774119 AAAGTAATAAAATTTGGGGAAAAA-ACGAACAAAGGGCCGAAATAAGGTTTTTTTTAAATTTCA-
1 AAAGTAATAAAATCCGGGGAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTTAAATTT-AT
* * *
14774182 ATAAAAAACACACTAAATGAATACATTTCAAATATAATGTACTAAAATAA--TAAAACT-AGAAA
65 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAA-TAATAAA
14774244 ATAG----TAT-TA-TTTTT
129 ATAGAAAATATATATTTTTT
14774258 AAAGTAATAAAATCCGGGGAAAAAATACGAACA
1 AAAGTAATAAAATCCGGGG-AAAAATACGAACA
14774291 TGGCTGAAAT
Statistics
Matches: 294, Mismatches: 21, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
139 20 0.07
140 8 0.03
141 8 0.03
142 2 0.01
146 3 0.01
147 10 0.03
148 1 0.00
149 60 0.20
150 49 0.17
151 49 0.17
152 84 0.29
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.29
Consensus pattern (148 bp):
AAAGTAATAAAATCCGGGGAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTTAAATTTATT
TAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
AGAAAATATATATTTTTT
Found at i:14780987 original size:3 final size:3
Alignment explanation
Indices: 14780981--14781010 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14780971 TCTCTCTCAA
14780981 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14781011 CAAAAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14791597 original size:15 final size:15
Alignment explanation
Indices: 14791577--14791612 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
14791567 ATTATAGGTG
14791577 AAGTAAATTTTGGAT
1 AAGTAAATTTTGGAT
14791592 AAGTAAATTTTGGAT
1 AAGTAAATTTTGGAT
14791607 AAGTAA
1 AAGTAA
14791613 TTTAGCCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.36
Consensus pattern (15 bp):
AAGTAAATTTTGGAT
Found at i:14791800 original size:21 final size:21
Alignment explanation
Indices: 14791775--14791822 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
14791765 GGATGATAAT
*
14791775 ATAAAAT-GAAGATTAATTTAA
1 ATAAAATGGAA-ATTAATTAAA
* *
14791796 GTAAATTGGAAATTAATTAAA
1 ATAAAATGGAAATTAATTAAA
14791817 ATAAAA
1 ATAAAA
14791823 CATGGTTTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.31
Consensus pattern (21 bp):
ATAAAATGGAAATTAATTAAA
Found at i:14801600 original size:83 final size:83
Alignment explanation
Indices: 14801473--14801630 Score: 226
Period size: 83 Copynumber: 1.9 Consensus size: 83
14801463 TACCTGAATC
* * *
14801473 GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCGATAAATGATCGAATTACTCCATAGGGTAAAAT
1 GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAAT
*
14801538 GACCAAATTACCTAAGTT
66 CACCAAATTACCTAAGTT
* * ** *
14801556 GCTCGAGGCGACTGCAGATCTTTTGAGAGGTCAATAAATGATCGAATTACCCCACATGGTAAAAT
1 GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAAT
*
14801621 CACCGAATTA
66 CACCAAATTA
14801631 ACCCCATAGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (83 bp):
GCTCGAGGCGACTGCAAACCTTTCAAGAGGTCAATAAATGATCGAATTACCCCACAGGGTAAAAT
CACCAAATTACCTAAGTT
Found at i:14801643 original size:27 final size:27
Alignment explanation
Indices: 14801591--14801811 Score: 205
Period size: 27 Copynumber: 8.3 Consensus size: 27
14801581 AGAGGTCAAT
* * * *
14801591 AAATGATCG-AATTACCCCACATGGTA
1 AAATGACCGAAATAACCCCATAGGGTA
* *
14801617 AAATCACCGAATTAACCCCATAGGGTA
1 AAATGACCGAAATAACCCCATAGGGTA
*
14801644 AAATGACCG-AATTACCCTCATAGGGTA
1 AAATGACCGAAATAACCC-CATAGGGTA
* * * * *
14801671 AAATGACTGAATTACCCCCACAGGATA
1 AAATGACCGAAATAACCCCATAGGGTA
* * *
14801698 AAATGATCGAAAT-ACCCCACAGGTTA
1 AAATGACCGAAATAACCCCATAGGGTA
* * *
14801724 AAATAACCGAAATATCCCTATAGGGTA
1 AAATGACCGAAATAACCCCATAGGGTA
* *
14801751 AAATGACCGAAATATCCCTATAGGGTA
1 AAATGACCGAAATAACCCCATAGGGTA
* * *
14801778 AAATAACCAAAATAACCCCATTGGGTA
1 AAATGACCGAAATAACCCCATAGGGTA
14801805 AAATGAC
1 AAATGAC
14801812 TGTTATGACC
Statistics
Matches: 158, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
26 35 0.22
27 118 0.75
28 5 0.03
ACGTcount: A:0.42, C:0.22, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATAACCCCATAGGGTA
Found at i:14801791 original size:54 final size:53
Alignment explanation
Indices: 14801613--14801811 Score: 227
Period size: 54 Copynumber: 3.7 Consensus size: 53
14801603 TACCCCACAT
* * *
14801613 GGTAAAATCACCGAATTAACCCCATAGGGTAAAATGACCGAATTACCCTCATAG
1 GGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAATACCCT-ATAG
* * * * * * * * *
14801667 GGTAAAATGACTGAATTACCCCCACAGGATAAAATGATCGAAATACCCCACAG
1 GGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAATACCCTATAG
* * *
14801720 GTTAAAATAACCGAAATATCCCTATAGGGTAAAATGACCGAAATATCCCTATAG
1 GGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAATA-CCCTATAG
* *
14801774 GGTAAAATAACCAAAATAACCCCATTGGGTAAAATGAC
1 GGTAAAATAACCGAAATAACCCCATAGGGTAAAATGAC
14801812 TGTTATGACC
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
53 39 0.33
54 80 0.67
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (53 bp):
GGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAATACCCTATAG
Found at i:14801810 original size:107 final size:107
Alignment explanation
Indices: 14801591--14801797 Score: 283
Period size: 107 Copynumber: 1.9 Consensus size: 107
14801581 AGAGGTCAAT
* * * *
14801591 AAATGATCGAATTACCCCACATGGTAAAATCACCGAATTAACCCCATAGGGTAAAATGACCGAAT
1 AAATGATCGAAATACCCCACATGGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAA
* ** * *
14801656 TACCCTCATAGGGTAAAATGACTGAATTACCCCCACAGGATA
66 TACCCTCATAGGGTAAAATAACCAAAATAACCCCACAGGATA
* *
14801698 AAATGATCGAAATACCCCACA-GGTTAAAATAACCGAAATATCCCTATAGGGTAAAATGACCGAA
1 AAATGATCGAAATACCCCACATGG-TAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAA
14801762 ATATCCCT-ATAGGGTAAAATAACCAAAATAACCCCA
65 ATA-CCCTCATAGGGTAAAATAACCAAAATAACCCCA
14801798 TTGGGTAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
106 2 0.02
107 81 0.93
108 4 0.05
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (107 bp):
AAATGATCGAAATACCCCACATGGTAAAATAACCGAAATAACCCCATAGGGTAAAATGACCGAAA
TACCCTCATAGGGTAAAATAACCAAAATAACCCCACAGGATA
Found at i:14802054 original size:26 final size:26
Alignment explanation
Indices: 14802018--14802098 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
14802008 TTTGCCACAT
*
14802018 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
*
14802044 ATACTGATACTGGCAGCTCTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * *
14802070 ATGCT-ATTACTAGCAACTTTGCTGCG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
14802096 ATA
1 ATA
14802099 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:14802205 original size:28 final size:27
Alignment explanation
Indices: 14802173--14802287 Score: 122
Period size: 28 Copynumber: 4.0 Consensus size: 27
14802163 TGTTGGCTGG
14802173 ATTGGGCTAAGGCCCACACTGTTACTGT
1 ATTGGGCTAAGGCCCACACTG-TACTGT
*
14802201 ATTGGGCTAAGGCCCACATTGTACTGGT
1 ATTGGGCTAAGGCCCACACTGTACT-GT
* *
14802229 ACTGAATAGGGCTCAGGCCCAGACTGTTACTGT
1 A-T---T-GGGCTAAGGCCCACACTG-TACTGT
*
14802262 ATTGGGCTAAGGCCCACATTGTACTG
1 ATTGGGCTAAGGCCCACACTGTACTG
14802288 GTACTGAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
27 9 0.12
28 38 0.52
29 2 0.03
32 2 0.03
33 18 0.25
34 4 0.05
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (27 bp):
ATTGGGCTAAGGCCCACACTGTACTGT
Found at i:14802241 original size:33 final size:33
Alignment explanation
Indices: 14802190--14802310 Score: 135
Period size: 33 Copynumber: 3.8 Consensus size: 33
14802180 TAAGGCCCAC
* * *
14802190 ACTGTTACTGTATTGGGCTAAGGCCCACATTGT
1 ACTGGTACTGAATAGGGCTAAGGCCCACATTGT
*
14802223 ACTGGTACTGAATAGGGCTCAGG-CC-CA--G-
1 ACTGGTACTGAATAGGGCTAAGGCCCACATTGT
* * *
14802251 ACTGTTACTGTATTGGGCTAAGGCCCACATTGT
1 ACTGGTACTGAATAGGGCTAAGGCCCACATTGT
*
14802284 ACTGGTACTGAATAGGGCTCAGGCCCA
1 ACTGGTACTGAATAGGGCTAAGGCCCA
14802311 GACTGTTACT
Statistics
Matches: 71, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
28 19 0.27
29 3 0.04
30 2 0.03
31 2 0.03
32 3 0.04
33 42 0.59
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (33 bp):
ACTGGTACTGAATAGGGCTAAGGCCCACATTGT
Found at i:14802271 original size:61 final size:61
Alignment explanation
Indices: 14802176--14802321 Score: 274
Period size: 61 Copynumber: 2.4 Consensus size: 61
14802166 TGGCTGGATT
* *
14802176 GGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCCCACATTGTACTGGTACTGAATA
1 GGGCTCAGGCCCAGACTGTTACTGTATTGGGCTAAGGCCCACATTGTACTGGTACTGAATA
14802237 GGGCTCAGGCCCAGACTGTTACTGTATTGGGCTAAGGCCCACATTGTACTGGTACTGAATA
1 GGGCTCAGGCCCAGACTGTTACTGTATTGGGCTAAGGCCCACATTGTACTGGTACTGAATA
14802298 GGGCTCAGGCCCAGACTGTTACTG
1 GGGCTCAGGCCCAGACTGTTACTG
14802322 CATGTTGTAT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 83 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (61 bp):
GGGCTCAGGCCCAGACTGTTACTGTATTGGGCTAAGGCCCACATTGTACTGGTACTGAATA
Found at i:14805865 original size:25 final size:25
Alignment explanation
Indices: 14805837--14805885 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14805827 TAAGCTTTCC
*
14805837 GATTTACAGCTCGTGA-GAGCATACT
1 GATTCACAGCTCGT-ATGAGCATACT
*
14805862 GATTCATAGCTCGTATGAGCATAC
1 GATTCACAGCTCGTATGAGCATAC
14805886 ATAAATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
GATTCACAGCTCGTATGAGCATACT
Found at i:14816258 original size:20 final size:24
Alignment explanation
Indices: 14816235--14816283 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 24
14816225 AACACTTAAT
14816235 TAAAACTA-AAAA-ATA-ATA-AA
1 TAAAACTAGAAAACATATATATAA
14816255 TAAAA-TAGAAAACATATATATAA
1 TAAAACTAGAAAACATATATATAA
14816278 TAAAAC
1 TAAAAC
14816284 ATGTATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.08
20 9 0.38
21 3 0.12
22 3 0.12
23 7 0.29
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (24 bp):
TAAAACTAGAAAACATATATATAA
Found at i:14821069 original size:11 final size:11
Alignment explanation
Indices: 14821055--14821102 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
14821045 ATATACAATT
*
14821055 AATAACAACAA
1 AATAATAACAA
*
14821066 AATATTAACAA
1 AATAATAACAA
* *
14821077 TATAATAACGA
1 AATAATAACAA
*
14821088 AATGATAACAA
1 AATAATAACAA
14821099 AATA
1 AATA
14821103 GCAACGAAAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.65, C:0.10, G:0.04, T:0.21
Consensus pattern (11 bp):
AATAATAACAA
Found at i:14821077 original size:31 final size:32
Alignment explanation
Indices: 14821018--14821080 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
14821008 ATAGTAGCAA
*
14821018 AATTAATAACGAAACAAAAGTTATACAATATAC
1 AATTAATAAC-AAACAAAAATTATACAATATAC
14821051 AATTAATAAC-AACAAAATATTA-ACAATATA
1 AATTAATAACAAACAAAA-ATTATACAATATA
14821081 ATAACGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 15 0.54
32 3 0.11
33 10 0.36
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.25
Consensus pattern (32 bp):
AATTAATAACAAACAAAAATTATACAATATAC
Found at i:14821090 original size:22 final size:22
Alignment explanation
Indices: 14821055--14821115 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
14821045 ATATACAATT
*
14821055 AATAACAACAAAATATTAACAA
1 AATAACAACGAAATATTAACAA
* *
14821077 TATAATAACGAAATGA-TAACAA
1 AATAACAACGAAAT-ATTAACAA
*
14821099 AATAGCAACGAAATATT
1 AATAACAACGAAATATT
14821116 TGACTTGGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.94
23 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAACAACGAAATATTAACAA
Found at i:14821568 original size:25 final size:25
Alignment explanation
Indices: 14821523--14821573 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14821513 GGTTAATTAG
* *
14821523 AGTTTAAGTGGGAAACTAAAAACCA
1 AGTTTAACTGGGAAACGAAAAACCA
*
14821548 AGTTTAACTGGGAGAA-GAAAAGCCA
1 AGTTTAACTGGGA-AACGAAAAACCA
14821573 A
1 A
14821574 AATAAACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.18
Consensus pattern (25 bp):
AGTTTAACTGGGAAACGAAAAACCA
Found at i:14821882 original size:25 final size:23
Alignment explanation
Indices: 14821838--14821888 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
14821828 TAAAAGCTGA
* *
14821838 AAATAAATTAATAAAAATTAGTT
1 AAATAAATTAAGAAAAATTAATT
14821861 AAATAAATCTGAAGAAAAATTAATT
1 AAATAAAT-T-AAGAAAAATTAATT
14821886 AAA
1 AAA
14821889 CTAAGCTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.33
24 1 0.04
25 15 0.62
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (23 bp):
AAATAAATTAAGAAAAATTAATT
Found at i:14825837 original size:23 final size:23
Alignment explanation
Indices: 14825811--14826340 Score: 236
Period size: 22 Copynumber: 22.4 Consensus size: 23
14825801 CAACTCTGTT
* *
14825811 TTGGACAGCAATTATTCAACAAA
1 TTGGACAGCAATTATACATCAAA
*
14825834 TTGGACAGCAATAATATGC-TCAAA
1 TTGGACAGCAAT--TATACATCAAA
*
14825858 ATGGACAGC-ATTATACATCAAA
1 TTGGACAGCAATTATACATCAAA
* * *
14825880 TTAGACAGCTTAAATATAC-CCAAAA
1 TTGGACAGC--AATTATACATC-AAA
* *
14825905 TTGGACAGCAGCTTAAATATACTCACAA
1 TTGGACAGCA-ATT--ATACA-TCA-AA
14825933 TTGGACAGC-ATTATACATCAAA
1 TTGGACAGCAATTATACATCAAA
* *
14825955 TTAGACAGCTTAAATATAC-TCACAA
1 TTGGACAGC--AATTATACATCA-AA
* *
14825980 TTGGACAGC-ATTATATATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826002 ATGGACAGC-ATCAGTACACTCAAAA
1 TTGGACAGCAATTA-TACA-TC-AAA
* *
14826027 TTGGACAAC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826049 ATGGACAGC-ATCAGTACACTCAAAA
1 TTGGACAGCAATTA-TACA-TC-AAA
* * *
14826074 TTGGACAAC-ATTACACATTAAA
1 TTGGACAGCAATTATACATCAAA
* * *
14826096 ATGGAAAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
14826121 TTGGACAGC-ATTACACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826143 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
*
14826168 TTGGACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826190 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
14826215 TTGGTCAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826237 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
* *
14826262 TTGAACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
* *
14826284 ATGGACAGC-ATCAATACACTCAAAA
1 TTGGACAGCAAT-TATACA-TC-AAA
*
14826309 TTGGACAGC-ATTATACATTAAA
1 TTGGACAGCAATTATACATCAAA
*
14826331 ATGGACAGCA
1 TTGGACAGCA
14826341 TCAATACACT
Statistics
Matches: 388, Mismatches: 79, Indels: 80
0.71 0.14 0.15
Matches are distributed among these distances:
21 4 0.01
22 125 0.32
23 57 0.15
24 59 0.15
25 125 0.32
26 5 0.01
27 1 0.00
28 12 0.03
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (23 bp):
TTGGACAGCAATTATACATCAAA
Found at i:14825910 original size:47 final size:47
Alignment explanation
Indices: 14825811--14825914 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 47
14825801 CAACTCTGTT
* * * *
14825811 TTGGACAGCAATTATTCAACAAATTGGACAGCAATAATATGCTCAAAA
1 TTGGACAGC-ATTATACAACAAATTAGACAGCAATAATATACCCAAAA
* *
14825859 -TGGACAGCATTATACATCAAATTAGACAGC-TTAAATATACCCAAAA
1 TTGGACAGCATTATACAACAAATTAGACAGCAAT-AATATACCCAAAA
14825905 TTGGACAGCA
1 TTGGACAGCA
14825915 GCTTAAATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
45 1 0.02
46 30 0.62
47 17 0.35
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.24
Consensus pattern (47 bp):
TTGGACAGCATTATACAACAAATTAGACAGCAATAATATACCCAAAA
Found at i:14825923 original size:28 final size:28
Alignment explanation
Indices: 14825885--14825942 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
14825875 TCAAATTAGA
14825885 CAGCTTAAATATACCCAAAATTGGACAG
1 CAGCTTAAATATACCCAAAATTGGACAG
* *
14825913 CAGCTTAAATATACTCACAATTGGACAG
1 CAGCTTAAATATACCCAAAATTGGACAG
14825941 CA
1 CA
14825943 TTATACATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (28 bp):
CAGCTTAAATATACCCAAAATTGGACAG
Found at i:14825946 original size:75 final size:71
Alignment explanation
Indices: 14825831--14826317 Score: 254
Period size: 69 Copynumber: 6.8 Consensus size: 71
14825821 ATTATTCAAC
*
14825831 AAATTGGACAGCAATAATATGCTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
1 AAATTGGACAGCAATAATATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
14825896 TACCCA
66 TACCCA
* *
14825902 AAATTGGACAGCAGCTTAAATATACTCACAATTGGACAGCATTATACATCAAATTAGACAGCTTA
1 AAATTGGACAGCA--AT-AATATACTCA-AAATGGACAGCATTATACATCAAATTAGACAGCTTA
*
14825967 AATATACTCA
62 AATATACCCA
* * * * * *
14825977 CAATTGGACAGC-ATTATATA-TTAAAATGGACAGCATCAGTACACTCAAAATTGGACAAC---A
1 AAATTGGACAGCAATAATATACTCAAAATGGACAGCATTA-TACA-TC-AAATTAGACAGCTTAA
* **
14826037 TTATACATTA
63 ATATAC-CCA
* * * * * * * * * *
14826047 AAA-TGGACAGC-ATCAGTACACTCAAAATTGGACAACATTACACATTAAAATGGAAAGCATCAA
1 AAATTGGACAGCAAT-AATATACTCAAAA-TGGACAGCATTATACATCAAATTAGACAGCTTAAA
* *
14826110 TACACTCA
64 TATACCCA
* * * *
14826118 AAATTGGACAGC-AT--TACACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGC---
1 AAATTGGACAGCAATAATATAC-TCAAAATGGACAGCAT-TATACA-TC-AAATTAGACAGCTTA
* **
14826177 ATTATACATTA
62 AATATAC-CCA
* * * * * * *
14826188 AAA-TGGACAGC-ATCAATACACTCAAAATTGGTCAGCATTATACATTAAAATGGACAGCATCAA
1 AAATTGGACAGCAAT-AATATACTCAAAA-TGGACAGCATTATACATCAAATTAGACAGCTTAAA
* *
14826251 TACACTCA
64 TATACCCA
* * * *
14826259 AAATTGAACAGC-AT--TATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAGC
1 AAATTGGACAGCAATAATATAC-TCAAAATGGACAGCAT-TATACA-TC-AAATTAGACAGC
14826318 ATTATACATT
Statistics
Matches: 330, Mismatches: 54, Indels: 63
0.74 0.12 0.14
Matches are distributed among these distances:
69 91 0.28
70 39 0.12
71 50 0.15
72 85 0.26
73 1 0.00
74 9 0.03
75 55 0.17
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (71 bp):
AAATTGGACAGCAATAATATACTCAAAATGGACAGCATTATACATCAAATTAGACAGCTTAAATA
TACCCA
Found at i:14825975 original size:47 final size:47
Alignment explanation
Indices: 14825920--14826361 Score: 706
Period size: 47 Copynumber: 9.4 Consensus size: 47
14825910 CAGCAGCTTA
* * * * * * *
14825920 AATATACTCACAATTGGACAGCATTATACATCAAATTAGACAGCTTA
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* * *
14825967 AATATACTCACAATTGGACAGCATTATATATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* *
14826014 AGTACACTCAAAATTGGACAACATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
* * * *
14826061 AGTACACTCAAAATTGGACAACATTACACATTAAAATGGAAAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
14826108 AATACACTCAAAATTGGACAGCATTACACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
14826155 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
14826202 AATACACTCAAAATTGGTCAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
*
14826249 AATACACTCAAAATTGAACAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
14826296 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
1 AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
14826343 AATACACTCAAAA-TGGACA
1 AATACACTCAAAATTGGACA
14826362 TCAAATTTGG
Statistics
Matches: 374, Mismatches: 21, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
46 6 0.02
47 368 0.98
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (47 bp):
AATACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATC
Found at i:14827380 original size:28 final size:27
Alignment explanation
Indices: 14827348--14827446 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
14827338 TTAATAAGTA
*
14827348 CGCACACTTAGTGCTTAATAATCAAACT
1 CGCACACTTAGTGCTT-ATAATTAAACT
* *
14827376 CGCACACTTAGTGCTT-TACCCTTATACT
1 CGCACACTTAGTGCTTATA--ATTAAACT
14827404 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAT-AATTAAACT
14827432 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14827447 AATCTCATTA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 55 0.89
29 3 0.05
30 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATTAAACT
Found at i:14835614 original size:22 final size:20
Alignment explanation
Indices: 14835578--14835636 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
14835568 TGCTAGACCT
14835578 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
14835600 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
14835621 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
14835637 TTTTAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:14835638 original size:11 final size:11
Alignment explanation
Indices: 14835618--14835675 Score: 68
Period size: 11 Copynumber: 5.4 Consensus size: 11
14835608 TAAAAATTAA
14835618 AAAAAGTATTTT
1 AAAAA-TATTTT
14835630 AAAAATATTTT
1 AAAAATATTTT
*
14835641 AAAAATA---A
1 AAAAATATTTT
14835649 AAAAAGTATTTT
1 AAAAA-TATTTT
14835661 AAAAATATTTT
1 AAAAATATTTT
14835672 AAAA
1 AAAA
14835676 TTAAAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
8 5 0.12
9 2 0.05
11 23 0.57
12 10 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Done.