Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 57 of 213
Found at i:15523397 original size:13 final size:13
Alignment explanation
Indices: 15523379--15523403 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15523369 TAATTAAGGT
15523379 ATAAAAGAAAAAA
1 ATAAAAGAAAAAA
15523392 ATAAAAGAAAAA
1 ATAAAAGAAAAA
15523404 GATGACATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
ATAAAAGAAAAAA
Found at i:15534497 original size:94 final size:95
Alignment explanation
Indices: 15534313--15534504 Score: 307
Period size: 94 Copynumber: 2.0 Consensus size: 95
15534303 TTCAGATGAC
** * * *
15534313 TTTAATTACTGGATTACCCCCATTGCACTATTTAAAAAAAATGAAAAGTAGAAAAAAAAAGGTTC
1 TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATAAAAAGGAGAAAAAAAAAGCTTC
15534378 TTAATGAATGCTGAGCCCTCGCTATTTTCAT
66 TTAATGAATGCTGAGCCCTCGCTATTTTC-T
*
15534409 TTTAATTACCAGATTACCCCCATTGCACTGTTT-AAAAAAATAAAAAGGAG-AAAAAAAAGCTTC
1 TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATAAAAAGGAGAAAAAAAAAGCTTC
15534472 TTAATGAATGCTGAGCCCTCGCTATTTTCT
66 TTAATGAATGCTGAGCCCTCGCTATTTTCT
15534502 TTT
1 TTT
15534505 CGTCACTTCC
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
93 4 0.04
94 41 0.46
95 15 0.17
96 30 0.33
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.32
Consensus pattern (95 bp):
TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATAAAAAGGAGAAAAAAAAAGCTTC
TTAATGAATGCTGAGCCCTCGCTATTTTCT
Found at i:15537834 original size:6 final size:6
Alignment explanation
Indices: 15537819--15537866 Score: 89
Period size: 6 Copynumber: 8.2 Consensus size: 6
15537809 CTTAAAACTG
15537819 ATCC-A ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA
1 ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA
15537866 A
1 A
15537867 AAACCCAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.10
6 38 0.90
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCCAA
Found at i:15542813 original size:12 final size:11
Alignment explanation
Indices: 15542796--15542864 Score: 54
Period size: 12 Copynumber: 6.3 Consensus size: 11
15542786 GATAAGAAGA
15542796 AATAATGAAAAT
1 AATAAT-AAAAT
15542808 AATAATAACAAT
1 AATAATAA-AAT
*
15542820 AATAGTACAAAT
1 AATAATA-AAAT
**
15542832 AATAATAGGAT
1 AATAATAAAAT
15542843 --TAAT-AAAT
1 AATAATAAAAT
*
15542851 AATAATAAATT
1 AATAATAAAAT
15542862 AAT
1 AAT
15542865 TAGTAAAAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
8 2 0.04
9 4 0.09
10 4 0.09
11 10 0.22
12 24 0.53
13 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:15543110 original size:19 final size:21
Alignment explanation
Indices: 15543072--15543110 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
15543062 CTTTTTTTAA
*
15543072 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
15543093 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
15543111 AACAGTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:15543329 original size:19 final size:19
Alignment explanation
Indices: 15543305--15543360 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
15543295 AATCACATCT
15543305 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
15543324 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
15543345 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
15543361 CTCGAAGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
21 18 0.56
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:15543342 original size:21 final size:21
Alignment explanation
Indices: 15543316--15543359 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15543306 CTAAGATTAC
15543316 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
15543337 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
15543358 AT
1 AT
15543360 CCTCGAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:15548119 original size:6 final size:6
Alignment explanation
Indices: 15548094--15548130 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
15548084 CCAAACACAC
15548094 CAGTATA CAGTAA TCAGTAA CAGTAA CAGTAA CAGTA
1 CAGTA-A CAGTAA -CAGTAA CAGTAA CAGTAA CAGTA
15548131 TTCAACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (6 bp):
CAGTAA
Found at i:15548161 original size:45 final size:43
Alignment explanation
Indices: 15548110--15548253 Score: 179
Period size: 45 Copynumber: 3.3 Consensus size: 43
15548100 ACAGTAATCA
15548110 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACC
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA-C
* * * *
15548154 TGTAACAGTAACGGTAACTGTATTCTACACACAAAGTGCCG-A-
1 -GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAC
*
15548196 GT--CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA-C
15548238 AGTAACAGTAACAGTA
1 -GTAACAGTAACAGTA
15548254 GTCGGCACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
39 32 0.38
40 1 0.01
41 2 0.02
43 2 0.02
44 1 0.01
45 47 0.55
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (43 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAC
Found at i:15548202 original size:39 final size:39
Alignment explanation
Indices: 15548114--15548253 Score: 172
Period size: 39 Copynumber: 3.4 Consensus size: 39
15548104 TAATCAGTAA
15548114 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACCTGT
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTG-A---GT
* * * *
15548157 AACAGTAACGGTAACTGTATTCTACACACAAAGTGCCGAGT
1 --CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGT
* *
15548198 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAAT
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGT
15548237 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
15548254 GTCGGCACAT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 51 0.59
41 2 0.02
44 1 0.01
45 32 0.37
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (39 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAGT
Found at i:15549341 original size:16 final size:16
Alignment explanation
Indices: 15549322--15549354 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15549312 TTCTATTCTG
*
15549322 TTTCTTTTCTTTCTTT
1 TTTCTATTCTTTCTTT
15549338 TTTCTATTCTTTCTTT
1 TTTCTATTCTTTCTTT
15549354 T
1 T
15549355 GTTTTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTCTATTCTTTCTTT
Found at i:15549376 original size:5 final size:5
Alignment explanation
Indices: 15549363--15549434 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
15549353 TTGTTTTATG
*
15549363 TATATA TATAA TATAA TATAT TAT-A T-TAA TAATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
*
15549411 TATAA TCATTAC TATAA TATAA TA
1 TATAA T-A-TAA TATAA TATAA TA
15549435 GTATTTTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
3 3 0.05
4 5 0.09
5 34 0.62
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:15549397 original size:19 final size:19
Alignment explanation
Indices: 15549364--15549416 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
15549354 TGTTTTATGT
15549364 ATATATATAATATAATATA
1 ATATATATAATATAATATA
*
15549383 TTATAT-TAATAATAATATA
1 ATATATATAAT-ATAATATA
*
15549402 ATATA-AAAATATAAT
1 ATATATATAATATAAT
15549417 CATTACTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATATAATATAATATA
Found at i:15549416 original size:24 final size:26
Alignment explanation
Indices: 15549370--15549432 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
15549360 ATGTATATAT
**
15549370 ATAATATAATAT-ATTATATTAAT-A
1 ATAATATAATATAAAAATATTAATCA
15549394 ATAATATAATATAAAAATA-TAATCA
1 ATAATATAATATAAAAATATTAATCA
* *
15549419 TTACTATAATATAA
1 ATAATATAATATAA
15549433 TAGTATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 16 0.48
25 17 0.52
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (26 bp):
ATAATATAATATAAAAATATTAATCA
Found at i:15550767 original size:16 final size:17
Alignment explanation
Indices: 15550746--15550777 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15550736 TTAAAATACT
15550746 TTTTAAAA-AAATTTTA
1 TTTTAAAATAAATTTTA
15550762 TTTTAAAATAAATTTT
1 TTTTAAAATAAATTTT
15550778 GTGTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTTAAAATAAATTTTA
Found at i:15551428 original size:14 final size:14
Alignment explanation
Indices: 15551408--15551442 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15551398 AATCAACCTT
15551408 CACCTCCACCAATC
1 CACCTCCACCAATC
* *
15551422 TACCTCCACCGATC
1 CACCTCCACCAATC
15551436 CACCTCC
1 CACCTCC
15551443 GGTCCTCCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.57, G:0.03, T:0.17
Consensus pattern (14 bp):
CACCTCCACCAATC
Found at i:15552623 original size:5 final size:5
Alignment explanation
Indices: 15552615--15552644 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
15552605 TTCTTTTTAG
*
15552615 AATTT AATTT AATTT AATTT AATTT GATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT
15552645 TCTTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:15553180 original size:24 final size:24
Alignment explanation
Indices: 15553153--15553200 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
15553143 GAATTTTTAA
15553153 GTTTTAAATTGTTTAAACTCAATT
1 GTTTTAAATTGTTTAAACTCAATT
*
15553177 GTTTTAAATTGTTTAAATTCAATT
1 GTTTTAAATTGTTTAAACTCAATT
15553201 TTTAAGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.52
Consensus pattern (24 bp):
GTTTTAAATTGTTTAAACTCAATT
Found at i:15554832 original size:12 final size:12
Alignment explanation
Indices: 15554815--15554840 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15554805 TATTTACTTA
15554815 TGATTATTGATG
1 TGATTATTGATG
15554827 TGATTATTGATG
1 TGATTATTGATG
15554839 TG
1 TG
15554841 GATTCAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (12 bp):
TGATTATTGATG
Found at i:15560667 original size:9 final size:10
Alignment explanation
Indices: 15560638--15560664 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
15560628 CGAAATTCAA
15560638 ATTTTTTTCG
1 ATTTTTTTCG
15560648 ATTTTTTTCG
1 ATTTTTTTCG
15560658 ATTTTTT
1 ATTTTTT
15560665 CGAGTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.74
Consensus pattern (10 bp):
ATTTTTTTCG
Found at i:15561195 original size:24 final size:24
Alignment explanation
Indices: 15561168--15561219 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15561158 TTAGTAAGTC
*
15561168 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15561192 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15561216 AAAT
1 AAAT
15561220 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15563339 original size:6 final size:6
Alignment explanation
Indices: 15563328--15563364 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
15563318 CCTTAAAACT
15563328 ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA A
1 ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA A
15563365 AAACCCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.16
Consensus pattern (6 bp):
ATCCAA
Found at i:15569867 original size:96 final size:95
Alignment explanation
Indices: 15569678--15569861 Score: 284
Period size: 92 Copynumber: 2.0 Consensus size: 95
15569668 TTCAGATGAC
** *
15569678 TTTAATTACTGGATTACCCCCATTGCACTATTTAAAAAAAATGAAAAGTAGAAAAAAAAAGGTTC
1 TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATGAAAAG-AGAAAAAAAAAGCTTC
15569743 TTAATGAATGCTGAGCCCTCGCTATTTTCAT
65 TTAATGAATGCTGAGCCCTCGCTATTTTCAT
* * *
15569774 TTTAATTACCAGATTACCCCCATTGCACTGTTT-AAAAAAAT-AAAA-AGGAGAAAAAAGCTTCT
1 TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATGAAAAGAGAAAAAAAAAGCTTCT
15569836 TAATGAATGCTGAGCCCTCGCTATTT
66 TAATGAATGCTGAGCCCTCGCTATTT
15569862 CTTTTCGTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
92 40 0.49
94 4 0.05
95 8 0.10
96 30 0.37
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (95 bp):
TTTAATTACCAGATTACCCCCATTGCACTATTTAAAAAAAATGAAAAGAGAAAAAAAAAGCTTCT
TAATGAATGCTGAGCCCTCGCTATTTTCAT
Found at i:15573186 original size:6 final size:6
Alignment explanation
Indices: 15573171--15573200 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
15573161 CTTAAAACTG
15573171 ATCC-A ATCCAA ATCCAA ATCCAA ATCCAA A
1 ATCCAA ATCCAA ATCCAA ATCCAA ATCCAA A
15573201 AAACCCAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCCAA
Found at i:15577740 original size:12 final size:11
Alignment explanation
Indices: 15577723--15577791 Score: 54
Period size: 12 Copynumber: 6.3 Consensus size: 11
15577713 GATAAGAAGA
15577723 AATAATGAAAAT
1 AATAAT-AAAAT
15577735 AATAATAACAAT
1 AATAATAA-AAT
*
15577747 AATAGTACAAAT
1 AATAATA-AAAT
**
15577759 AATAATAGGAT
1 AATAATAAAAT
15577770 --TAAT-AAAT
1 AATAATAAAAT
*
15577778 AATAATAAATT
1 AATAATAAAAT
15577789 AAT
1 AAT
15577792 TAGTAAAAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
8 2 0.04
9 4 0.09
10 4 0.09
11 10 0.22
12 24 0.53
13 1 0.02
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:15591791 original size:5 final size:5
Alignment explanation
Indices: 15591781--15591805 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15591771 CAATCGTTAA
15591781 CAAAT CAAAT CAAAT CAAAT CAAAT
1 CAAAT CAAAT CAAAT CAAAT CAAAT
15591806 ATATACATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
CAAAT
Found at i:15601592 original size:132 final size:133
Alignment explanation
Indices: 15601445--15601683 Score: 358
Period size: 132 Copynumber: 1.8 Consensus size: 133
15601435 AACGCCATAA
* * * *
15601445 AAAATTATTTTATTTGGAATAAAACGACATTGTTTTGCTAT-AT-AAAATGGCGCTAATTTTTTA
1 AAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGATAAAAATCGCGCT-ATTTTTTA
*
15601508 AACTAAAATTATTTTTTTGTGGCG-TTTTTTATAAAAACGCCGCTATTGCTCACCTTTTGCGGCG
65 AACTAAAATTA-TTTTTTGTGGCGTTTTTTTATAAAAACACCGCTATTGCTCACCTTTTGCGGCG
15601572 TTTTT
129 TTTTT
* *
15601577 AAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGCTAAAAATCTCGCTATTTTTTAA
1 AAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGATAAAAATCGCGCTATTTTTTAA
* *
15601642 AGTAAATTTATTTTTTGTGGCGTTTTTTTATAAAAACACCGC
66 ACTAAAATTATTTTTTGTGGCGTTTTTTTATAAAAACACCGC
15601684 AAAAAATTAT
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
132 50 0.53
133 36 0.38
134 9 0.09
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (133 bp):
AAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGATAAAAATCGCGCTATTTTTTAA
ACTAAAATTATTTTTTGTGGCGTTTTTTTATAAAAACACCGCTATTGCTCACCTTTTGCGGCGTT
TTT
Found at i:15602203 original size:8 final size:7
Alignment explanation
Indices: 15602174--15602219 Score: 65
Period size: 7 Copynumber: 6.3 Consensus size: 7
15602164 AGTAGTTAAT
15602174 CTAAACC
1 CTAAACC
*
15602181 TTAAACC
1 CTAAACC
15602188 CTAAACC
1 CTAAACC
15602195 CTAAAACC
1 CT-AAACC
15602203 CTAAACC
1 CTAAACC
15602210 CATAAACC
1 C-TAAACC
15602218 CT
1 CT
15602220 TAACACATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 21 0.60
8 14 0.40
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:15602203 original size:15 final size:15
Alignment explanation
Indices: 15602174--15602219 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
15602164 AGTAGTTAAT
*
15602174 CTAAA-CCTTAAACC
1 CTAAACCCTAAAACC
15602188 CTAAACCCTAAAACC
1 CTAAACCCTAAAACC
15602203 CTAAACCC-ATAAACC
1 CTAAACCCTA-AAACC
15602218 CT
1 CT
15602220 TAACACATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 6 0.21
15 23 0.79
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.17
Consensus pattern (15 bp):
CTAAACCCTAAAACC
Found at i:15602228 original size:15 final size:15
Alignment explanation
Indices: 15602182--15602229 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
15602172 ATCTAAACCT
*
15602182 TAAACCCTAAAC-CC
1 TAAACCCTAAACACA
*
15602196 TAAAACCCTAAACCCA
1 T-AAACCCTAAACACA
*
15602212 TAAACCCTTAACACA
1 TAAACCCTAAACACA
15602227 TAA
1 TAA
15602230 CCTTTAAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 26 0.90
16 2 0.07
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAACCCTAAACACA
Found at i:15602584 original size:41 final size:41
Alignment explanation
Indices: 15602527--15602605 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
15602517 TTTTAAATCT
15602527 CTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGAC
1 CTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGAC
**
15602568 CTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAA
1 CTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAA
15602606 TCCCCGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (41 bp):
CTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGAC
Found at i:15602794 original size:114 final size:114
Alignment explanation
Indices: 15602537--15602945 Score: 626
Period size: 114 Copynumber: 3.6 Consensus size: 114
15602527 CTGAGCATTA
* *
15602537 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
*
15602602 TAAATCCCCGAAAGCTCA-AAAACGGCGTCGTTGGGTTTAGGTTTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
*** * * *
15602650 GCGGCGCTTCTTTAAAAACACCGCTAAAGACCAGAGCATTAGCGGTGCTTTCTTAAAAACACCGC
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
**
15602715 TAAATCCCCGAAAGCTCAGAAAACGGTATCGTTGGGCTTAGGTTTTTTT
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
*
15602764 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
* *
15602829 TAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTG
66 TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
* * * *
15602878 GCGGCGCTT-CCCAAAAACGCCGCTAAAGACCTA-AGCTTTAGCGGGGCTTCCCTAAAAACGCCG
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACC-AGAGCATTAGCGGCGCTTTCTTAAAAACGCCG
15602941 CTAAA
65 CTAAA
15602946 GACCTGAGCA
Statistics
Matches: 267, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
113 128 0.48
114 139 0.52
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (114 bp):
GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
TAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
Found at i:15602936 original size:227 final size:227
Alignment explanation
Indices: 15602537--15602945 Score: 678
Period size: 227 Copynumber: 1.8 Consensus size: 227
15602527 CTGAGCATTA
*
15602537 GCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
* * * **
15602602 TAAATCCCCGAAAGCTCAAAAACGGCGTCGTTGGGTTTAGGTTTTTTTGCGGCGCTTCTTTAAAA
66 TAAATCACCGAAAGCTCAAAAACGGCGTCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCCAAAA
* * *
15602667 ACACCGCTAAAGACCAGAGCATTAGCGGTGCTTTCTTAAAAACACCGCTAAATCCCCGAAAGCTC
131 ACACCGCTAAAGACCAGAGCATTAGCGGGGCTTCCCTAAAAACACCGCTAAATCCCCGAAAGCTC
15602732 AGAAAACGGTATCGTTGGGCTTAGGTTTTTTT
196 AGAAAACGGTATCGTTGGGCTTAGGTTTTTTT
15602764 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
15602829 TAAATCACCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTGGCGGCGCTTC-CCAAA
66 TAAATCACCGAAAGCTCA-AAAACGGCGTCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCCAAA
* * *
15602893 AACGCCGCTAAAGACCTA-AGCTTTAGCGGGGCTTCCCTAAAAACGCCGCTAAA
130 AACACCGCTAAAGACC-AGAGCATTAGCGGGGCTTCCCTAAAAACACCGCTAAA
15602946 GACCTGAGCA
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
227 129 0.77
228 39 0.23
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (227 bp):
GCGGCGCTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
TAAATCACCGAAAGCTCAAAAACGGCGTCGTTGGGCTTAGGTTTTTTGGCGGCGCTTCTCCAAAA
ACACCGCTAAAGACCAGAGCATTAGCGGGGCTTCCCTAAAAACACCGCTAAATCCCCGAAAGCTC
AGAAAACGGTATCGTTGGGCTTAGGTTTTTTT
Found at i:15602937 original size:41 final size:41
Alignment explanation
Indices: 15602878--15602986 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
15602868 AGGTTTTTTG
*
15602878 GCGGCGCTTCCC-AAAAACGCCGCTAAAGACCTAAGCTTTA
1 GCGGCGCTTCCCTAAAAACGCCGCTAAAGACCTAAGCATTA
* *
15602918 GCGGGGCTTCCCTAAAAACGCCGCTAAAGACCTGAGCATTA
1 GCGGCGCTTCCCTAAAAACGCCGCTAAAGACCTAAGCATTA
* *
15602959 GCGGCGCTTTCTTAAAAACGCCGCTAAA
1 GCGGCGCTTCCCTAAAAACGCCGCTAAA
15602987 TCACCGAAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 11 0.18
41 51 0.82
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTCCCTAAAAACGCCGCTAAAGACCTAAGCATTA
Found at i:15605563 original size:21 final size:21
Alignment explanation
Indices: 15605537--15605592 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
15605527 AACAGCGGTG
*
15605537 GCGGTGAGATTAGTTACTATA
1 GCGGTGAGATTAGATACTATA
* *
15605558 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTATA
15605579 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
15605593 AACAGTGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:15605715 original size:9 final size:9
Alignment explanation
Indices: 15605701--15605735 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
15605691 ATAGAAGTTT
15605701 TTTAAATTA
1 TTTAAATTA
15605710 TTTAAATTA
1 TTTAAATTA
15605719 TTTAAAATTA
1 TTT-AAATTA
*
15605729 TTAAAAT
1 TTTAAAT
15605736 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TTTAAATTA
Found at i:15612116 original size:32 final size:32
Alignment explanation
Indices: 15612040--15612125 Score: 130
Period size: 26 Copynumber: 2.9 Consensus size: 32
15612030 TAAAAAATTC
15612040 AAGTATTAATCAATTGTTATCACCAGTTTAAT
1 AAGTATTAATCAATTGTTATCACCAGTTTAAT
15612072 AAG-A--AA-C-A-TGTTATCACCAGTTTAAT
1 AAGTATTAATCAATTGTTATCACCAGTTTAAT
15612098 AAGTATTAATCAATTGTTATCACCAGTT
1 AAGTATTAATCAATTGTTATCACCAGTT
15612126 GGATGGTGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
26 21 0.44
27 2 0.04
28 1 0.02
29 4 0.08
30 1 0.02
31 2 0.04
32 17 0.35
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (32 bp):
AAGTATTAATCAATTGTTATCACCAGTTTAAT
Found at i:15616807 original size:41 final size:41
Alignment explanation
Indices: 15616750--15616833 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
15616740 TCCTTGTTTG
15616750 TTGTCTTGTTGGATCCTTCATGTTATATTATTTAATTAGTC
1 TTGTCTTGTTGGATCCTTCATGTTATATTATTTAATTAGTC
15616791 TTGTCTTGTTGGATCCTTCATGTTATATTATTTAATTAGTC
1 TTGTCTTGTTGGATCCTTCATGTTATATTATTTAATTAGTC
15616832 TT
1 TT
15616834 AAGGTTTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (41 bp):
TTGTCTTGTTGGATCCTTCATGTTATATTATTTAATTAGTC
Found at i:15619839 original size:18 final size:18
Alignment explanation
Indices: 15619816--15619856 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
15619806 AAATCAAAGA
15619816 GCAAACTAGGCCTTTCAG
1 GCAAACTAGGCCTTTCAG
15619834 GCAAACTAGGCCTTTCAG
1 GCAAACTAGGCCTTTCAG
*
15619852 TCAAA
1 GCAAA
15619857 ATTTTTCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (18 bp):
GCAAACTAGGCCTTTCAG
Found at i:15624461 original size:54 final size:53
Alignment explanation
Indices: 15624371--15624485 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 53
15624361 GTTGAGACTA
*
15624371 ATTCAGAATAGGTACAAAATCGATGACAACTTTACAGAGAGGTAGAACACCGAT
1 ATTC-GAATAGGTACAAAATCGATGACAACTCTACAGAGAGGTAGAACACCGAT
*
15624425 ATTCGAATAGGTTACAAAATCGATGACAACTCTACAGAGAGGTAGAAGACCGAT
1 ATTCGAATAGG-TACAAAATCGATGACAACTCTACAGAGAGGTAGAACACCGAT
15624479 ATTCGAA
1 ATTCGAA
15624486 AATAATGTTG
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
53 7 0.12
54 51 0.88
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (53 bp):
ATTCGAATAGGTACAAAATCGATGACAACTCTACAGAGAGGTAGAACACCGAT
Found at i:15627377 original size:25 final size:24
Alignment explanation
Indices: 15627353--15627431 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 24
15627343 AAAAATTATA
15627353 AAATATAAAAATATATATATGTAT
1 AAATATAAAAATATATATATGTAT
* * * *
15627377 ATATAAGAAAAATATATATGTGTGT
1 AAAT-ATAAAAATATATATATGTAT
* *
15627402 GAATTATAAAAA-ATA-ATATATAT
1 -AAATATAAAAATATATATATGTAT
15627425 AAATATA
1 AAATATA
15627432 CATATTTTAA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
22 6 0.14
23 5 0.12
24 6 0.14
25 23 0.55
26 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (24 bp):
AAATATAAAAATATATATATGTAT
Found at i:15627395 original size:23 final size:22
Alignment explanation
Indices: 15627355--15627397 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
15627345 AAATTATAAA
*
15627355 ATATAAAAATATATATATGTAT
1 ATATAAAAAAATATATATGTAT
15627377 ATATAAGAAAAATATATATGT
1 ATATAA-AAAAATATATATGT
15627398 GTGTGAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAT
Found at i:15628129 original size:19 final size:19
Alignment explanation
Indices: 15628080--15628158 Score: 113
Period size: 19 Copynumber: 4.0 Consensus size: 19
15628070 TACAAATTAA
* *
15628080 ATATCTAAGATTACAAAATC
1 ATATCTAAGATTGC-ATATC
15628100 ATATCTCTAAGATTGCATATC
1 ATA--TCTAAGATTGCATATC
15628121 ATATCTAAGATTGCATATC
1 ATATCTAAGATTGCATATC
15628140 ATATCTAAGATTGCATATC
1 ATATCTAAGATTGCATATC
15628159 CTTGAAGATT
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
19 35 0.64
20 3 0.05
21 7 0.13
22 10 0.18
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.35
Consensus pattern (19 bp):
ATATCTAAGATTGCATATC
Found at i:15629040 original size:50 final size:50
Alignment explanation
Indices: 15628985--15629260 Score: 205
Period size: 50 Copynumber: 5.5 Consensus size: 50
15628975 CCAAGGAGAT
* * * *
15628985 AAGATTTGCCGTTGTGGCTTTAATCTATTTAACTGCAATGTCAGGGAAAC
1 AAGATTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAAC
* * * ** * * ** * **
15629035 CAGATTCGCCGTCGTAGCTTTAATCTGTTCCATTACACCGCCAGGGAAGT
1 AAGATTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAAC
* * **
15629085 AAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAAC
1 AAGATTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAAC
* * * * ** * * * * **
15629135 AAGATCCACCGTCGTAGCTTCAATTTGTTCCACTACACTGCCAAGGAAGT
1 AAGATTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAAC
* * *
15629185 AAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATGT-TGGAGAAAC
1 AAGA-TTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGG-GAAAC
15629235 AAGATTCGCCGTCGTAGCTTCAATCT
1 AAGATTCGCCGTCGTAGCTTCAATCT
15629261 GTTCCACTAT
Statistics
Matches: 161, Mismatches: 62, Indels: 6
0.70 0.27 0.03
Matches are distributed among these distances:
49 4 0.02
50 155 0.96
51 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (50 bp):
AAGATTCGCCGTCGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAAC
Found at i:15629321 original size:50 final size:50
Alignment explanation
Indices: 15629036--15629319 Score: 212
Period size: 50 Copynumber: 5.7 Consensus size: 50
15629026 CAGGGAAACC
* * * *
15629036 AGATTCGCCGTCGTAGCTTTAATCTGTTCCATTACACCGCCAGGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGGGAAGTA
* * ** * * *** **
15629086 AGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGGGAAGTA
* * * * *
15629136 AGATCCACCGTCGTAGCTTCAATTTGTTCCACTACACTGCCAAGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGGGAAGTA
* * ** * * ** **
15629186 AGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATG-TTGGAGAAACA
1 AGA-TTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGG-GAAGTA
* * *
15629236 AGATTCGCCGTCGTAGCTTCAATCTGTTCCACTATACCGCCAGGGAAGTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGGGAAGTA
* * *
15629286 AGATTCGACGTTGTGGCTTCAATCTATTCCACTA
1 AGATTCGCCGTCGTAGCTTCAATCTATTCCACTA
15629320 TAATGCCAAA
Statistics
Matches: 168, Mismatches: 62, Indels: 8
0.71 0.26 0.03
Matches are distributed among these distances:
49 4 0.02
50 160 0.95
51 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
AGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACTGCCAGGGAAGTA
Found at i:15629338 original size:50 final size:50
Alignment explanation
Indices: 15629235--15629342 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 50
15629225 TTGGAGAAAC
* * * **
15629235 AAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTATACCGCCAGGGAAGT
1 AAGATTCGACGTCGTAGCTTCAATCTATTCCACTATAACGCCAAAGAAGT
* * *
15629285 AAGATTCGACGTTGTGGCTTCAATCTATTCCACTATAATGCCAAAG-AGAT
1 AAGATTCGACGTCGTAGCTTCAATCTATTCCACTATAACGCCAAAGAAG-T
15629335 AAGATTCG
1 AAGATTCG
15629343 CTGCCCACAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 2 0.04
50 47 0.96
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
AAGATTCGACGTCGTAGCTTCAATCTATTCCACTATAACGCCAAAGAAGT
Found at i:15629341 original size:100 final size:100
Alignment explanation
Indices: 15628984--15629949 Score: 535
Period size: 100 Copynumber: 9.3 Consensus size: 100
15628974 GCCAAGGAGA
* * * *
15628984 TAAGATTTGCCGTTGTGGCTTTAATCTATTTAACTGCAATGTCAGG-GAAACCAGATTCGCCGTC
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGT-TGGAGAAACAAGATTCGCCGTC
* *
15629048 GTAGCTTTAATCTGTTCCATTACACCGCCAGGGAAG
65 GTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* * *
15629084 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATCCACCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTCG
* * *
15629149 TAGCTTCAATTTGTTCCACTACACTGCCAAGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
15629184 TAAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTC
1 TAAGA-TTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTC
*
15629248 GTAGCTTCAATCTGTTCCACTATACCGCCAGGGAAG
65 GTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* ** ** **** * * * *
15629284 TAAGATTCGACGTTGTGGCTTCAATCTATTCCACTATAATGCCAAAGAGATAAGATTCGCTGCCC
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCG-TC
** * * * * * * **
15629349 ACAGCTTTAATCCGCTCCACTTCATCTAATCTAAGTCTTAACGCCAG
65 GTAGCTTCAATCTGTTCCAC-T-A-C--A-C--CG-C--CAGGGAAG
** ** * * * * * * * * * ***
15629396 GGAGATAAG--ATTCGCTGCCCTCAGCTTTAATCTACTCTGCTATAACGTCAGG-GAAGTGAGAT
1 TAAGATTCGCCGTT-G-TGGCTTCA-ATCT-ATTTA-ACTGC---AATGT-TGGAGAAACAAGAT
* ** * * ** * ** **
15629458 TAGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCAAAG-AG
57 TCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* * ***** * * * **
15629501 ATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTATTTCAA-GTCTTAACGCTAAG
1 -TAAGATTCGCCG-TTGTGGCTTCAAT---CT--A-TTTA---ACTGCAATGT-TGGA-G--AA-
* ** * * * * * * * * **
15629565 GAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCACTATAACGTCAGAAAAG
50 -ACAAG--ATTCGCCGTCGT-AGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* * * * * * *
15629620 TAAGATTCGCCGTTTTGGCTTCAATATAGTTGACTGCAATGTCGGGGAACCAAGATTCGCCGTCG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTCG
* *
15629685 TAGCTTCAATTTGTTCCACTACACCGCTAGGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
* * * *
15629720 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAACAAGATCCACCGTAG
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTCG
* *
15629785 TAGCTTCAATCTGTTCCACTACACTGCCAAGGAAG
66 TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
15629820 TAAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTC
1 TAAGA-TTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTC
*
15629884 GTAGCTTCAATCTGTTCCACTATACCGCCAGGGAAG
65 GTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
15629920 TAAGATTCGCCGTTGTGGCTTCAATCTATT
1 TAAGATTCGCCGTTGTGGCTTCAATCTATT
15629950 CCACTGTAAT
Statistics
Matches: 633, Mismatches: 185, Indels: 96
0.69 0.20 0.11
Matches are distributed among these distances:
99 8 0.01
100 448 0.71
101 31 0.05
102 1 0.00
103 2 0.00
105 4 0.01
106 7 0.01
107 6 0.01
108 6 0.01
109 8 0.01
110 6 0.01
111 5 0.01
112 17 0.03
113 6 0.01
114 4 0.01
115 2 0.00
116 1 0.00
117 26 0.04
118 43 0.07
119 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (100 bp):
TAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGAGAAACAAGATTCGCCGTCG
TAGCTTCAATCTGTTCCACTACACCGCCAGGGAAG
Found at i:15629555 original size:168 final size:168
Alignment explanation
Indices: 15629263--15629660 Score: 573
Period size: 168 Copynumber: 2.4 Consensus size: 168
15629253 TTCAATCTGT
* * * * ** **
15629263 TCCACTATACCGCCAGGGAAGTAAGATTCGACGTTGTGGCTTCAATCTATTCCACTATAATGCCA
1 TCCACTATAACGTCAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCA
* *
15629328 AAGAGATAAGATTCGCTGCCCACAGCTTTAATCCGCTCCACTTCATCTAATCTAAGTCTTAACGC
66 AAGAGATAAGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCTAAGTCTTAACGC
*
15629393 CAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTAC
131 CAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTAC
** * *
15629431 TCTGCTATAACGTCAGGGAAGTGAGATTAGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCA
1 TCCACTATAACGTCAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCA
* *
15629496 AAGAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCT-ATTTCAAGTCTTAACG
66 AAGAGATAAGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCT-AAGTCTTAACG
* *
15629560 CTAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGC
130 CCAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTAC
** * *
15629599 TCCACTATAACGTCAGAAAAGTAAGATTCGCCGTTTTGGCTTCAATATAGTTGACTGCAATG
1 TCCACTATAACGTCAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATG
15629661 TCGGGGAACC
Statistics
Matches: 202, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
167 3 0.01
168 199 0.99
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (168 bp):
TCCACTATAACGTCAGGGAAGTAAGATTCGCCGTTTTGGCTTCAATCTATTTGACTGCAATGCCA
AAGAGATAAGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCTAAGTCTTAACGC
CAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTAC
Found at i:15629718 original size:50 final size:50
Alignment explanation
Indices: 15629664--15629954 Score: 235
Period size: 50 Copynumber: 5.8 Consensus size: 50
15629654 TGCAATGTCG
* * * * *
15629664 GGGAACCAAGATTCGCCGTCGTAGCTTCAATTTGTTCCACTACACCGCTA
1 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
* * ** * * * *
15629714 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTG
1 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
* * * * * *
15629764 GGGAAACAAGATCCACCGTAGTAGCTTCAATCTGTTCCACTACACTGCCA
1 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
* * * ** * * *
15629814 AGGAAGTAAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATG-TT
1 GGGAAGCAAGA-TTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
* * * * * *
15629863 GGAGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTATACCGCCA
1 GG-GAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
* *
15629914 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACT
1 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACT
15629955 GTAATGCCAA
Statistics
Matches: 178, Mismatches: 59, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
49 4 0.02
50 170 0.96
51 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (50 bp):
GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACTGCTA
Found at i:15629976 original size:50 final size:49
Alignment explanation
Indices: 15629620--15629963 Score: 217
Period size: 50 Copynumber: 6.9 Consensus size: 49
15629610 GTCAGAAAAG
* * * * *
15629620 TAAGATTCGCCGTTTTGGCTTCAATATAGTT-GACTGCAATGTCGGGGAA
1 TAAGATTCGCCGTTGTGGCTTCAATCTA-TTCCACTGCAATGCCAGGGAA
* * * * * * ** *
15629669 CCAAGATTCGCCGTCGTAGCTTCAATTTGTTCCACTACACCGCTAGGGAA
1 -TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGGGAA
** ***
15629719 GTAAGATTCGCCGTTGTGGCTTCAATCTATTTAACTGCAATGTTGGGGAAA
1 -TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGGG-AA
* * * * * * * * *
15629770 CAAGATCCACCGTAGTAGCTTCAATCTGTTCCACTACACTGCCAAGGAA
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGGGAA
** **
15629819 GTAAGATTTC-CCGTTGTGGCTTCAATCTATTTAACTGCAATG-TTGGAGAAA
1 -TAAGA-TTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGG-G-AA
* * * * ** **
15629870 CAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTATACCGCCAGGGAA
1 TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGGGAA
*
15629919 GTAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGTAATGCCA
1 -TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCA
15629964 AAGAGATAAG
Statistics
Matches: 214, Mismatches: 71, Indels: 18
0.71 0.23 0.06
Matches are distributed among these distances:
49 10 0.05
50 196 0.92
51 8 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (49 bp):
TAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCAATGCCAGGGAA
Found at i:15631432 original size:42 final size:42
Alignment explanation
Indices: 15631364--15631447 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
15631354 AGTATAGCAA
* *
15631364 GATCACCACATGCCTCAATCTGATCAAAATTTGAGCTGCTCT
1 GATCACCACATGCCTCAATCTAATCAAAATTTGAGCCGCTCT
* *
15631406 GATCACCTCATGTCCT-ATTCTAATCAAAATTTGAGCCGCTCT
1 GATCACCACATG-CCTCAATCTAATCAAAATTTGAGCCGCTCT
15631448 TTTCGGGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 34 0.92
43 3 0.08
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (42 bp):
GATCACCACATGCCTCAATCTAATCAAAATTTGAGCCGCTCT
Found at i:15637749 original size:100 final size:100
Alignment explanation
Indices: 15637628--15637846 Score: 312
Period size: 100 Copynumber: 2.2 Consensus size: 100
15637618 TCGTAACTTT
* ** * * * *
15637628 AATCTGTTTAACTGCAATGTCGAGGAAACAAGATTTGCTGTTGTAGCTTCAATTTGTTCCACTAT
1 AATCTATTTAACTGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTAC
15637693 ACCGCCAGGAAAGTAAGATTCGCTATTGTAGCTTC
66 ACCGCCAGGAAAGTAAGATTCGCTATTGTAGCTTC
* *
15637728 AATCTATTTAACTGCAATGTCGGGGAACCAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTAC
1 AATCTATTTAACTGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTAC
* * * *
15637793 ACCGTCAGGGAAGTAAGATTTGCTATTGTATCTTC
66 ACCGCCAGGAAAGTAAGATTCGCTATTGTAGCTTC
*
15637828 AATCTATTTAACTACAATG
1 AATCTATTTAACTGCAATG
15637847 CCAAAGAGAT
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 105 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (100 bp):
AATCTATTTAACTGCAATGTCGAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTAC
ACCGCCAGGAAAGTAAGATTCGCTATTGTAGCTTC
Found at i:15637761 original size:50 final size:50
Alignment explanation
Indices: 15637707--15637846 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 50
15637697 CCAGGAAAGT
* *
15637707 AAGATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAACC
1 AAGATTCGCTATTGTAGCTTCAATCTATTTAACTACAATGTCAGGGAACC
* ** * * ** ** **
15637757 AAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGTCAGGGAAGT
1 AAGATTCGCTATTGTAGCTTCAATCTATTTAACTACAATGTCAGGGAACC
* *
15637807 AAGATTTGCTATTGTATCTTCAATCTATTTAACTACAATG
1 AAGATTCGCTATTGTAGCTTCAATCTATTTAACTACAATG
15637847 CCAAAGAGAT
Statistics
Matches: 66, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (50 bp):
AAGATTCGCTATTGTAGCTTCAATCTATTTAACTACAATGTCAGGGAACC
Found at i:15638177 original size:50 final size:50
Alignment explanation
Indices: 15638079--15638178 Score: 155
Period size: 50 Copynumber: 2.0 Consensus size: 50
15638069 GATTCGCTAT
* * *
15638079 TGTAGCTTCAATCTATTTAACTGCAATGCCAAAGAGATAGGATTCGCTGC
1 TGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGACTCGCTGC
* *
15638129 TGTAGCTTCAACCTATTCCACTGTAATGCCAAAGAGATAGGACTCGCTGC
1 TGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGACTCGCTGC
15638179 CCACAGCTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
TGTAGCTTCAACCTATTCAACTGCAATGCCAAAGAGATAGGACTCGCTGC
Found at i:15638273 original size:310 final size:312
Alignment explanation
Indices: 15637843--15638446 Score: 906
Period size: 310 Copynumber: 1.9 Consensus size: 312
15637833 ATTTAACTAC
*
15637843 AATGCCAAAGAGATAGGATTCCCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTATTTCAAGTC
1 AATGCCAAAGAGATAGGACTCCCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTATTTCAAGTC
*
15637908 TTAACGCCAGGGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCTACTATAACGTCAGGGAA
66 TTAACGCCAGGGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCACTATAACGTCAGGGAA
* * * *
15637973 GTAAGATTCATCGTTTTGGCTTTAA-T-CTGCATTGTCGGAAAACCAAGATTCACCGTCGTAGCT
131 GTAAGATTCACCGTTTTGGCTTCAATTACTGCAATGTCGGAAAACCAAGATTCACCATCGTAGCT
* * * *
15638036 TCAATCTGTTCCACTACACCGTCAGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTATTTAACT
196 TCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCACCATTGTAGCTTCAATCTATTCAACT
*
15638101 GCAATGCCAAAGAGATAGGATTCGCTGCTGTAGCTTCAACCTATTCCACTGT
261 ACAATGCCAAAGAGATAGGATTCGCTGCTGTAGCTTCAACCTATTCCACTGT
* * *
15638153 AATGCCAAAGAGATAGGACTCGCTGCCCACAGCTTTAATCTGCTCCACTTCAGCTATTTCAAGTC
1 AATGCCAAAGAGATAGGACTCCCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTATTTCAAGTC
* * *
15638218 TTAACGCCATGGAGATAAGATTCACTGTCCTCAGCTTTAATCTGCTCCGCTATAACGTCAGGGAA
66 TTAACGCCAGGGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCACTATAACGTCAGGGAA
** * *
15638283 GTAAGATTCACCGTTTTGGCTTCAATCTCTTTAACTGCAATGTCGGGGAACCAAGATTCGCTATC
131 GTAAGATTCACCGTTTTGGCTTCAA-----TT-ACTGCAATGTCGGAAAACCAAGATTCACCATC
* *
15638348 GTAGCTTCAATCTGTTCCACTACACTGCCAGGGAGGTAAGATTCACCATTGTAGCTTCAATCTAT
190 GTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCACCATTGTAGCTTCAATCTAT
* * *
15638413 TCCACTATAATGCCAAAGTGATAGGATTCGCTGC
255 TCAACTACAATGCCAAAGAGATAGGATTCGCTGC
15638447 CCACAGCTTT
Statistics
Matches: 260, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
310 145 0.56
316 1 0.00
318 114 0.44
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (312 bp):
AATGCCAAAGAGATAGGACTCCCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTATTTCAAGTC
TTAACGCCAGGGAGATAAGATTCACTGCCCTCAGCTTTAATCTGCTCCACTATAACGTCAGGGAA
GTAAGATTCACCGTTTTGGCTTCAATTACTGCAATGTCGGAAAACCAAGATTCACCATCGTAGCT
TCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATTCACCATTGTAGCTTCAATCTATTCAACT
ACAATGCCAAAGAGATAGGATTCGCTGCTGTAGCTTCAACCTATTCCACTGT
Found at i:15638692 original size:44 final size:44
Alignment explanation
Indices: 15638611--15638696 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
15638601 AGACAGGATC
* *
15638611 TACAATCTTCCACTTATTCCATTACTATTCAAGGAGCTAGGACT
1 TACAATCTTCCACCTATTCCACTACTATTCAAGGAGCTAGGACT
* *
15638655 TACAATCTTCCACCTATTCCACTGCTGTTC-AGAGAGCTAGGA
1 TACAATCTTCCACCTATTCCACTACTATTCAAG-GAGCTAGGA
15638697 TTTATGGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
TACAATCTTCCACCTATTCCACTACTATTCAAGGAGCTAGGACT
Found at i:15639338 original size:34 final size:34
Alignment explanation
Indices: 15639295--15639364 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
15639285 CTAAAGAGAT
15639295 AATCTTAATTTAGACTCTTCCTTCTCAGATTACC
1 AATCTTAATTTAGACTCTTCCTTCTCAGATTACC
15639329 AATCTTAATTTAGACTCTTCCTTCTCAGATTACC
1 AATCTTAATTTAGACTCTTCCTTCTCAGATTACC
15639363 AA
1 AA
15639365 CCTTTAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (34 bp):
AATCTTAATTTAGACTCTTCCTTCTCAGATTACC
Found at i:15644782 original size:3 final size:3
Alignment explanation
Indices: 15644776--15644835 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
15644766 CAACAACAAC
15644776 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15644824 AAT AAT AAT AAT
1 AAT AAT AAT AAT
15644836 GAAAAGATAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15645191 original size:36 final size:36
Alignment explanation
Indices: 15645151--15645226 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
15645141 TGAAACATAG
*
15645151 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATGTTATA
* *
15645187 AAAATTAAAAAATGTGTACGTATATGTATATGTTATA
1 AAAATTAAAAAATATGTA-GTATATATATATGTTATA
15645224 AAA
1 AAA
15645227 CGTATGCATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.50, C:0.01, G:0.11, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATGTTATA
Found at i:15645354 original size:23 final size:24
Alignment explanation
Indices: 15645328--15645374 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
15645318 CATAATTGTG
*
15645328 TTAATAATATTAAAA-AAAATAAT
1 TTAATAATAATAAAACAAAATAAT
15645351 TTAATAATAATAAAACTAAAATAA
1 TTAATAATAATAAAAC-AAAATAA
15645375 CAAATAGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
25 7 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
TTAATAATAATAAAACAAAATAAT
Found at i:15645823 original size:19 final size:19
Alignment explanation
Indices: 15645778--15645831 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
15645768 AATCATATCT
*
15645778 TCTAAGACTGCATATCATA
1 TCTAAGATTGCATATCATA
15645797 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
15645816 TCTAAGATTACATATC
1 TCTAAGATTGCATATC
15645832 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15660254 original size:43 final size:43
Alignment explanation
Indices: 15660207--15660289 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 43
15660197 TTATGTGATT
15660207 GATATTGAAATGGCAAA-GATGAGAAATAAATATGAGATGAGAA
1 GATATTGAAATGG-AAATGATGAGAAATAAATATGAGATGAGAA
* *
15660250 GATATTGAAATGGAAATGATGAGAAATGATTATGAGATGA
1 GATATTGAAATGGAAATGATGAGAAATAAATATGAGATGA
15660290 AATATGAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.48, C:0.01, G:0.27, T:0.24
Consensus pattern (43 bp):
GATATTGAAATGGAAATGATGAGAAATAAATATGAGATGAGAA
Found at i:15660296 original size:7 final size:7
Alignment explanation
Indices: 15660286--15660319 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
15660276 TGATTATGAG
15660286 ATGAAAT
1 ATGAAAT
15660293 ATGAAAT
1 ATGAAAT
15660300 ATGAAAT
1 ATGAAAT
15660307 ATGAAAT
1 ATGAAAT
15660314 GATGAA
1 -ATGAA
15660320 TTGAGATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.81
8 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (7 bp):
ATGAAAT
Found at i:15660767 original size:11 final size:14
Alignment explanation
Indices: 15660738--15660772 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
15660728 TTTGTTGATA
15660738 TTGTTATTAAGGTG
1 TTGTTATTAAGGTG
15660752 TTGTTATTAAGGTG
1 TTGTTATTAAGGTG
15660766 TTGTTAT
1 TTGTTAT
15660773 CTTTGACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (14 bp):
TTGTTATTAAGGTG
Found at i:15666724 original size:37 final size:37
Alignment explanation
Indices: 15666660--15666816 Score: 190
Period size: 37 Copynumber: 4.0 Consensus size: 37
15666650 TACGTATGAT
*
15666660 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
15666696 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
15666733 CACCTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
15666776 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
15666816 C
1 C
15666817 GAAGCTATCA
Statistics
Matches: 105, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
36 10 0.10
37 53 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 29 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:15666804 original size:46 final size:46
Alignment explanation
Indices: 15666737--15666955 Score: 276
Period size: 52 Copynumber: 4.5 Consensus size: 46
15666727 TGTAGCCACC
* **
15666737 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACT
1 TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* *
15666783 TATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15666829 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
*
15666881 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15666933 TATCACTTTGTCACTTGATCAGA
1 TATCACTTTGTCACTTGATCAGA
15666956 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
46 65 0.41
49 1 0.01
50 1 0.01
51 3 0.02
52 90 0.56
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:15666852 original size:52 final size:52
Alignment explanation
Indices: 15666776--15666949 Score: 285
Period size: 52 Copynumber: 3.3 Consensus size: 52
15666766 TAGCTAAAGC
* * *
15666776 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15666829 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* *
15666881 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15666933 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
15666950 ATCAGAAGTA
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 96 0.84
53 18 0.16
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:15671435 original size:37 final size:37
Alignment explanation
Indices: 15671371--15671527 Score: 190
Period size: 37 Copynumber: 4.0 Consensus size: 37
15671361 TACGTATGAT
*
15671371 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
15671407 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
15671444 CACCTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
15671487 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
15671527 C
1 C
15671528 GAAGCTATCA
Statistics
Matches: 105, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
36 10 0.10
37 53 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 29 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:15671515 original size:46 final size:46
Alignment explanation
Indices: 15671448--15671666 Score: 276
Period size: 52 Copynumber: 4.5 Consensus size: 46
15671438 TGTAGCCACC
* **
15671448 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACT
1 TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* *
15671494 TATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15671540 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
*
15671592 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15671644 TATCACTTTGTCACTTGATCAGA
1 TATCACTTTGTCACTTGATCAGA
15671667 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
46 65 0.41
49 1 0.01
50 1 0.01
51 3 0.02
52 90 0.56
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
TATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:15671563 original size:52 final size:52
Alignment explanation
Indices: 15671487--15671660 Score: 285
Period size: 52 Copynumber: 3.3 Consensus size: 52
15671477 TAGCTAAAGC
* * *
15671487 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15671540 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* *
15671592 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
15671644 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
15671661 ATCAGAAGTA
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 96 0.84
53 18 0.16
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:15674315 original size:20 final size:20
Alignment explanation
Indices: 15674290--15674331 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15674280 AAATAGATAC
15674290 AAAGAAACAAACAAAGAAAT
1 AAAGAAACAAACAAAGAAAT
15674310 AAAGAAACAAACAAAGAAAT
1 AAAGAAACAAACAAAGAAAT
15674330 AA
1 AA
15674332 TCCTTAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.76, C:0.10, G:0.10, T:0.05
Consensus pattern (20 bp):
AAAGAAACAAACAAAGAAAT
Found at i:15680125 original size:4 final size:4
Alignment explanation
Indices: 15680126--15680164 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
15680116 TATATATATA
* * *
15680126 TATG TATG TATG TATG CATG TATG TATA TATA TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
15680165 AGTTTTGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:15680127 original size:8 final size:8
Alignment explanation
Indices: 15680114--15680165 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
15680104 TGTCCCTTAT
*
15680114 TATATATA
1 TATATATG
15680122 TATATATG
1 TATATATG
*
15680130 TATGTATG
1 TATATATG
**
15680138 TATGCATG
1 TATATATG
* *
15680146 TATGTATA
1 TATATATG
15680154 TATATATG
1 TATATATG
15680162 TATA
1 TATA
15680166 GTTTTGGGTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (8 bp):
TATATATG
Found at i:15680161 original size:12 final size:12
Alignment explanation
Indices: 15680114--15680165 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
15680104 TGTCCCTTAT
*
15680114 TATATATATATA
1 TATATATATATG
* *
15680126 TATGTATGTATG
1 TATATATATATG
** *
15680138 TATGCATGTATG
1 TATATATATATG
15680150 TATATATATATG
1 TATATATATATG
15680162 TATA
1 TATA
15680166 GTTTTGGGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (12 bp):
TATATATATATG
Found at i:15691175 original size:21 final size:23
Alignment explanation
Indices: 15691140--15691185 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
15691130 TATACAACCT
15691140 TTTTATTTCTTTTTTGAGATCCA
1 TTTTATTTCTTTTTTGAGATCCA
15691163 TTTT-TTT-TTTTTTGAGATCCA
1 TTTTATTTCTTTTTTGAGATCCA
15691184 TT
1 TT
15691186 AGAGTTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 16 0.70
22 3 0.13
23 4 0.17
ACGTcount: A:0.15, C:0.11, G:0.09, T:0.65
Consensus pattern (23 bp):
TTTTATTTCTTTTTTGAGATCCA
Found at i:15704256 original size:9 final size:9
Alignment explanation
Indices: 15704242--15704272 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
15704232 CTGCAAATGT
15704242 TTGTGATTG
1 TTGTGATTG
15704251 TTGTGATTG
1 TTGTGATTG
15704260 TTGTGATTG
1 TTGTGATTG
15704269 TTGT
1 TTGT
15704273 TGACCAGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.32, T:0.58
Consensus pattern (9 bp):
TTGTGATTG
Found at i:15704514 original size:20 final size:20
Alignment explanation
Indices: 15704485--15704522 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15704475 GTCTTACACC
*
15704485 AATAATAATTTATTTTTATA
1 AATAACAATTTATTTTTATA
15704505 AATAACAATTTATTTTTA
1 AATAACAATTTATTTTTA
15704523 ACATGATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
AATAACAATTTATTTTTATA
Found at i:15708470 original size:14 final size:14
Alignment explanation
Indices: 15708451--15708489 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
15708441 TATTCAGTAA
15708451 TATTATTATTAATC
1 TATTATTATTAATC
*
15708465 TATTATTATTAATT
1 TATTATTATTAATC
15708479 TATTATTATTA
1 TATTATTATTA
15708490 TCACCATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATTATTAATC
Found at i:15708473 original size:17 final size:17
Alignment explanation
Indices: 15708451--15708490 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
15708441 TATTCAGTAA
15708451 TATTATT-ATTAATCTAT
1 TATTATTAATTAAT-TAT
*
15708468 TATTATTAATTTATTAT
1 TATTATTAATTAATTAT
15708485 TATTAT
1 TATTAT
15708491 CACCATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTATTAATTAATTAT
Found at i:15715132 original size:26 final size:26
Alignment explanation
Indices: 15715109--15715159 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15715099 CCTCTTCCTC
15715109 TTCCCAATCCCTAATTCCCTTTCCCT
1 TTCCCAATCCCTAATTCCCTTTCCCT
15715135 TTCCCAATCCCTAATTCCCTTTCCC
1 TTCCCAATCCCTAATTCCCTTTCCC
15715160 CCTAAATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.47, G:0.00, T:0.37
Consensus pattern (26 bp):
TTCCCAATCCCTAATTCCCTTTCCCT
Found at i:15726081 original size:85 final size:85
Alignment explanation
Indices: 15725964--15726256 Score: 358
Period size: 84 Copynumber: 3.4 Consensus size: 85
15725954 TTTTTGCACC
** *
15725964 CAATTGGGTACTTGAACTTTCAAAATATATCAAAAAGACCTTTAAACTTTTTCAAAAAAAGCAAT
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCTTCAAACTTTTTCAAAAAAAGCAAT
*
15726029 TAAGCCCCTGTTTTCCCATT
66 TAAGCCCCTGTTTTCCCACT
* *
15726049 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAA-A-CTCTCAAACTTTTCCAAAAAAAACAA
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCT-TCAAACTTTTTCAAAAAAAGCAA
* * **
15726112 TTAATCCCCTTTTTTTTCACT
65 TTAAGCCCCTGTTTTCCCACT
* * * * *
15726133 CAATTGGGTGCTTGAACTTTCAAAATGCACCAAAATGCCCCTCAAACTTTTTCAAAAAAAGCAAT
1 CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCTTCAAACTTTTTCAAAAAAAGCAAT
*
15726198 TAAGCCCCAGTTTTCCCCCCACT
66 TAAGCCCCTGTTTT---CCCACT
* *
15726221 AAATTGGGTACTTGAA-TTGCCAAAATGCATCAAAAA
1 CAATTGGGTACTTGAACTT-TCAAAATGCATCAAAAA
15726257 AGCCCTTTGA
Statistics
Matches: 174, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
83 2 0.01
84 70 0.40
85 67 0.39
86 1 0.01
87 2 0.01
88 32 0.18
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (85 bp):
CAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCTTCAAACTTTTTCAAAAAAAGCAAT
TAAGCCCCTGTTTTCCCACT
Found at i:15726416 original size:20 final size:20
Alignment explanation
Indices: 15726391--15726438 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
15726381 AATAAAAGTT
*
15726391 ATAAAAATGA-TTATATTTTA
1 ATAAAAAT-ATTTAAATTTTA
15726411 ATAAAAATATTTAAATTTTA
1 ATAAAAATATTTAAATTTTA
*
15726431 TTAAAAAT
1 ATAAAAAT
15726439 TAGAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAAAAATATTTAAATTTTA
Found at i:15726457 original size:9 final size:9
Alignment explanation
Indices: 15726445--15726514 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
15726435 AAATTAGAAA
15726445 AAAAATTAT
1 AAAAATTAT
*
15726454 AAAAATTGT
1 AAAAATTAT
*
15726463 AAAAAATAT
1 AAAAATTAT
*
15726472 AAAAAATAT
1 AAAAATTAT
*
15726481 AAAATTTTAT
1 AAAA-ATTAT
*
15726491 AAAAATCATAA
1 AAAAAT--TAT
15726502 AAAAATTAT
1 AAAAATTAT
15726511 AAAA
1 AAAA
15726515 TATATAGAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
9 35 0.70
10 7 0.14
11 8 0.16
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:15726466 original size:30 final size:30
Alignment explanation
Indices: 15726432--15726540 Score: 86
Period size: 30 Copynumber: 3.7 Consensus size: 30
15726422 TAAATTTTAT
*
15726432 TAAAAATTAGAAAAAAAATTATAAAAATTG
1 TAAAAATTAGAAAAAAAATTATAAAAATTA
* * *
15726462 TAAAAA--ATATAAAAAA-TATAAAATTTTA
1 TAAAAATTAGAAAAAAAATTATAAAA-ATTA
* *
15726490 TAAAAATCA-TAAAAAAATTAT-AAAATATA
1 TAAAAATTAGAAAAAAAATTATAAAAAT-TA
*
15726519 TAGAAATATAG-AAAAAAATTAT
1 TAAAAAT-TAGAAAAAAAATTAT
15726541 CAAATTTTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
27 7 0.11
28 17 0.27
29 17 0.27
30 22 0.35
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (30 bp):
TAAAAATTAGAAAAAAAATTATAAAAATTA
Found at i:15726494 original size:37 final size:40
Alignment explanation
Indices: 15726450--15726525 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 40
15726440 AGAAAAAAAA
**
15726450 TTATAAAAATTGT-AAAAAA-TATAAAAAATATA-AAATT
1 TTATAAAAATCATAAAAAAATTATAAAAAATATAGAAATT
*
15726487 TTATAAAAATCATAAAAAAATTATAAAATATATAGAAAT
1 TTATAAAAATCATAAAAAAATTATAAAAAATATAGAAAT
15726526 ATAGAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 11 0.33
38 6 0.18
39 12 0.36
40 4 0.12
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (40 bp):
TTATAAAAATCATAAAAAAATTATAAAAAATATAGAAATT
Found at i:15726520 original size:9 final size:9
Alignment explanation
Indices: 15726444--15726534 Score: 60
Period size: 10 Copynumber: 9.7 Consensus size: 9
15726434 AAAATTAGAA
15726444 AAAAAATTAT
1 AAAAAA-TAT
* *
15726454 AAAAATTGT
1 AAAAAATAT
15726463 AAAAAATAT
1 AAAAAATAT
15726472 AAAAAATAT
1 AAAAAATAT
* *
15726481 -AAAATTTT
1 AAAAAATAT
15726489 ATAAAAATCAT
1 A-AAAAAT-AT
15726500 AAAAAA-ATT
1 AAAAAATA-T
*
15726509 ATAAAATAT
1 AAAAAATAT
*
15726518 ATAGAAATAT
1 A-AAAAATAT
15726528 AGAAAAA
1 A-AAAAA
15726535 AATTATCAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
8 7 0.11
9 26 0.42
10 27 0.44
11 2 0.03
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.27
Consensus pattern (9 bp):
AAAAAATAT
Found at i:15726535 original size:59 final size:57
Alignment explanation
Indices: 15726413--15726574 Score: 166
Period size: 59 Copynumber: 2.8 Consensus size: 57
15726403 ATATTTTAAT
* * * * *
15726413 AAAAATATTTAAATTTTATTAAAAATTAGAAAAAAAATTATAAAAATTGTAAAAAATATA
1 AAAAATA-TAAAATTTTA-TAAAAATCA-TAAAAAAATTATAAAAATTATAAAAAATAAA
*
15726473 AAAAATATAAAATTTTATAAAAATCATAAAAAAATTAT-AAAATATATAGAAATATAGAA
1 AAAAATATAAAATTTTATAAAAATCATAAAAAAATTATAAAAAT-TATA-AAAAATA-AA
* * *
15726532 AAAAATTATCAAATTTTAT-AAAGTCATAAGAAAATTATAAAAA
1 AAAAA-TATAAAATTTTATAAAAATCATAAAAAAATTATAAAAA
15726575 ATGTAAAGAA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
56 5 0.06
57 14 0.16
58 14 0.16
59 32 0.36
60 23 0.26
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (57 bp):
AAAAATATAAAATTTTATAAAAATCATAAAAAAATTATAAAAATTATAAAAAATAAA
Found at i:15726600 original size:20 final size:19
Alignment explanation
Indices: 15726559--15726614 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
15726549 ATAAAGTCAT
15726559 AAGAAAATTATAAAAAATGTA
1 AAGAAAA-TAT-AAAAATGTA
*
15726580 AAGAAAATATAAAATTCGTA
1 AAGAAAATATAAAAAT-GTA
*
15726600 AA-AAAGTATAAAAAT
1 AAGAAAATATAAAAAT
15726615 TATCGTACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 16 0.52
20 8 0.26
21 7 0.23
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (19 bp):
AAGAAAATATAAAAATGTA
Found at i:15726615 original size:20 final size:19
Alignment explanation
Indices: 15726562--15726615 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
15726552 AAGTCATAAG
* *
15726562 AAAATTATAAAAAATGTAA
1 AAAAATATAAAAATTGTAA
15726581 AGAAAATAT-AAAATTCGTAA
1 A-AAAATATAAAAATT-GTAA
*
15726601 AAAAGTATAAAAATT
1 AAAAATATAAAAATT
15726616 ATCGTACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAAATATAAAAATTGTAA
Found at i:15731214 original size:43 final size:43
Alignment explanation
Indices: 15731153--15731251 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
15731143 TGTCCCAGAC
* ** *
15731153 ATGGTCTTACATGGAAATCTCGTATCGATGCCAATAGCCTAGCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
15731197 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCATCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
15731240 ATGGTCTTACAC
1 ATGGTCTTACAC
15731252 ATAAACACTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 39 0.78
44 11 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:15731681 original size:57 final size:57
Alignment explanation
Indices: 15731617--15731730 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
15731607 GTTCAAGAAG
15731617 AAAGAAAAAAGATAATAGCTTTTAAATTTTGTCTTATTATACCATTATTAACTTAAT
1 AAAGAAAAAAGATAATAGCTTTTAAATTTTGTCTTATTATACCATTATTAACTTAAT
15731674 AAAGAAAAAAGATAATAGCTTTTAAATTTTGTCTTATTATACCATTATTAACTTAAT
1 AAAGAAAAAAGATAATAGCTTTTAAATTTTGTCTTATTATACCATTATTAACTTAAT
15731731 TACCAATTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (57 bp):
AAAGAAAAAAGATAATAGCTTTTAAATTTTGTCTTATTATACCATTATTAACTTAAT
Found at i:15734683 original size:26 final size:26
Alignment explanation
Indices: 15734654--15734869 Score: 207
Period size: 26 Copynumber: 8.3 Consensus size: 26
15734644 CGTAATGTAC
**
15734654 TTTATTTAATAGGCTTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * *
15734680 TTTATTTAGCAGGTTTTGAGCCAGTT
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
15734706 TTTATTTATCAAGCTTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* **
15734732 TTTATTTAGTAGGCTTTGAGCCAATG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * **
15734758 ATTATTTAGCAGGCCTTGAGCTAGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* *
15734784 TGTATTTAGCAGGCCTTGAGCCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * ** *
15734810 TGTATTTAGCAGGCCTTGAGTTGATG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
* * *
15734836 TTTATCTAGTAGGCTTTGAGTCGGTG
1 TTTATTTAGCAGGCTTTGAGCCGGTG
*
15734862 ATTATTTA
1 TTTATTTA
15734870 ACATGTACTA
Statistics
Matches: 155, Mismatches: 35, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 155 1.00
ACGTcount: A:0.20, C:0.13, G:0.26, T:0.41
Consensus pattern (26 bp):
TTTATTTAGCAGGCTTTGAGCCGGTG
Found at i:15741465 original size:29 final size:30
Alignment explanation
Indices: 15741388--15741466 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 30
15741378 GTATAACATG
*
15741388 GATAAATT--AAAGGTTAAAATAAACTTGA
1 GATAAATTAAAAACGTTAAAATAAACTTGA
* * * *
15741416 -ATAGATTAACAACATTGAAATAAA-TTGA
1 GATAAATTAAAAACGTTAAAATAAACTTGA
*
15741444 GATAAATTAAAAATGTTAAAATA
1 GATAAATTAAAAACGTTAAAATA
15741467 TTAAAAAGAG
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
27 6 0.16
28 4 0.11
29 28 0.74
ACGTcount: A:0.56, C:0.04, G:0.11, T:0.29
Consensus pattern (30 bp):
GATAAATTAAAAACGTTAAAATAAACTTGA
Found at i:15743487 original size:44 final size:43
Alignment explanation
Indices: 15743381--15743846 Score: 159
Period size: 44 Copynumber: 10.2 Consensus size: 43
15743371 TTCGGTCTAT
* ** * * * *
15743381 TCCACTGTAATCTCATGGAGATAAGA--CCTGATGTGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTTTTGTTTTAATCTGC
* *
15743422 TCTACTGTAA-CTTCAGCGAGATAAGATCTTTTGTTTTAATCTGC
1 TCCACTGTAATC-TCAGGGAGATAAGAT-TTTTGTTTTAATCTGC
* * * * * *
15743466 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAACCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATT-TTTGTTTTAATCTGC
* * * * *
15743510 TCCGCTCTAATCTCAGAGAGATAAGATTTCTGGCTTCAATCTGATGTGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTT-TTG-TT---T-T-A----ATCTGC
* * * *
15743564 TCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCTGC
1 TCCACTGTAATC-TCAGGGAGATAAGAT-TTTTGTTTTAATCTGC
* * * * * *
15743608 TCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATT-TTTGTTTTAATCTGC
* * * *
15743652 TCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGTGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTT-TTG-TT---T-T-A----ATCTGC
* * * *
15743706 TCTACTGTAA-CTTCAGGGAGATAAGATCCTTTATTTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGAT-TTTTGTTTTAATCTGC
* * * * *
15743750 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATT-TTTGTTTTAATCTGC
* * * * *
15743794 TCCTGCTGTAATCTCAAGGAGATAAGATTTCTAGCTTCAATCTGC
1 TCC-ACTGTAATCTCAGGGAGATAAGATTT-TTGTTTTAATCTGC
*
15743839 TCCGCTGT
1 TCCACTGT
15743847 TGCTTAGGGA
Statistics
Matches: 313, Mismatches: 74, Indels: 73
0.68 0.16 0.16
Matches are distributed among these distances:
40 1 0.00
41 21 0.07
43 1 0.00
44 174 0.56
45 43 0.14
48 4 0.01
49 2 0.01
50 4 0.01
53 6 0.02
54 55 0.18
55 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (43 bp):
TCCACTGTAATCTCAGGGAGATAAGATTTTTGTTTTAATCTGC
Found at i:15743664 original size:142 final size:142
Alignment explanation
Indices: 15743408--15743837 Score: 754
Period size: 142 Copynumber: 3.0 Consensus size: 142
15743398 GAGATAAGAC
* * *
15743408 CTGATGTGATCTACTCTACTGTAACTTCAGCGAGATAAGATCTTTTGTTTTAATCTGCTCCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* *
15743473 TAATCTCAGGGAGATAGGATTACTAGCTTCAACCTGCTCCGCTCTAATCTC-AGAGAGATAAGAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAG-GAGATAAGAT
15743537 TTCTGGCTTCAAT
130 TTCTGGCTTCAAT
15743550 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
*
15743615 TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
15743680 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
15743692 CTGATGTGATCTACTCTACTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
15743757 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCTGCTGTAATCTCAAGGAGATAAGAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCC-GCTGTAATCTCAAGGAGATAAGAT
*
15743822 TTCTAGCTTCAAT
130 TTCTGGCTTCAAT
15743835 CTG
1 CTG
15743838 CTCCGCTGTT
Statistics
Matches: 276, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
142 235 0.85
143 41 0.15
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (142 bp):
CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATT
TCTGGCTTCAAT
Found at i:15743815 original size:45 final size:44
Alignment explanation
Indices: 15743743--15743846 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 44
15743733 CCTTTATTTT
* * * *
15743743 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTACTAGCTTC
*
15743787 AATCTGCTCCTGCTGTAATCTCAAGGAGATAAGATTTCTAGCTTC
1 AATCTGCTCC-GCTGTAATCTCAAGGAGATAAGATTACTAGCTTC
15743832 AATCTGCTCCGCTGT
1 AATCTGCTCCGCTGT
15743847 TGCTTAGGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 14 0.26
45 40 0.74
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTACTAGCTTC
Found at i:15756326 original size:29 final size:30
Alignment explanation
Indices: 15756249--15756327 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 30
15756239 GTATAACATG
*
15756249 GATAAATT--AAAGGTTAAAATAAACTTGA
1 GATAAATTAAAAACGTTAAAATAAACTTGA
* * * *
15756277 -ATAGATTAACAACATTGAAATAAA-TTGA
1 GATAAATTAAAAACGTTAAAATAAACTTGA
*
15756305 GATAAATTAAAAATGTTAAAATA
1 GATAAATTAAAAACGTTAAAATA
15756328 TTAAAAAGAG
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
27 6 0.16
28 4 0.11
29 28 0.74
ACGTcount: A:0.56, C:0.04, G:0.11, T:0.29
Consensus pattern (30 bp):
GATAAATTAAAAACGTTAAAATAAACTTGA
Found at i:15759258 original size:18 final size:20
Alignment explanation
Indices: 15759223--15759260 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
15759213 AATATAATTT
*
15759223 TTTTCAAAAAATATTATAAA
1 TTTTCAAAAAAGATTATAAA
15759243 TTTT-AAAAAAGA-TATAAA
1 TTTTCAAAAAAGATTATAAA
15759261 ATAAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
TTTTCAAAAAAGATTATAAA
Found at i:15759936 original size:29 final size:29
Alignment explanation
Indices: 15759876--15759936 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
15759866 TTATATAATG
* * * *
15759876 TAAGTGCTTAAATTGCAAACTTTTTATTT
1 TAAGTGCCTAAAATGCAAAATTTTTATGT
15759905 TAAGTGCCTAAAATG-AAAATTTTTATAGT
1 TAAGTGCCTAAAATGCAAAATTTTTAT-GT
15759934 TAA
1 TAA
15759937 TTAACTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (29 bp):
TAAGTGCCTAAAATGCAAAATTTTTATGT
Found at i:15767806 original size:32 final size:31
Alignment explanation
Indices: 15767760--15767826 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
15767750 ACCTAAAATT
* *
15767760 ATTAATTCTAATTATTCTAA-TATTTTATTTA
1 ATTAATTCTAATTATT-TAATTATATAATTTA
*
15767791 ATTAATTTTTAATTATTTAATTATATAATTTA
1 ATTAA-TTCTAATTATTTAATTATATAATTTA
15767823 ATTA
1 ATTA
15767827 CGACTTCCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 8 0.26
32 23 0.74
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (31 bp):
ATTAATTCTAATTATTTAATTATATAATTTA
Found at i:15767810 original size:15 final size:15
Alignment explanation
Indices: 15767756--15767812 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
15767746 TCCTACCTAA
*
15767756 AATTA-TTAA-TTCT
1 AATTATTTAATTTTT
15767769 AATTATTCTAATATTTT
1 AATTATT-TAAT-TTTT
* *
15767786 ATTTAATTAATTTTT
1 AATTATTTAATTTTT
15767801 AATTATTTAATT
1 AATTATTTAATT
15767813 ATATAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 5 0.14
14 1 0.03
15 17 0.49
16 4 0.11
17 8 0.23
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (15 bp):
AATTATTTAATTTTT
Found at i:15775390 original size:17 final size:17
Alignment explanation
Indices: 15775370--15775413 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
15775360 AGGGAATAAA
15775370 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
15775387 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
15775404 -ATATGTATAT
1 AAAATGTATAT
15775414 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:15775396 original size:27 final size:27
Alignment explanation
Indices: 15775366--15775417 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
15775356 AGTTAGGGAA
*
15775366 TAAAAAAATGTATATGTATATAAAATG
1 TAAAAAAATATATATGTATATAAAATG
***
15775393 TAAATGTATATATATGTATATAAAA
1 TAAAAAAATATATATGTATATAAAA
15775418 GTTATGCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (27 bp):
TAAAAAAATATATATGTATATAAAATG
Found at i:15775639 original size:26 final size:26
Alignment explanation
Indices: 15775614--15775663 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15775604 TTCTAAATTA
*
15775614 ATTAATT-TTAATATATGTAATTATT
1 ATTAATTGTTAATATATATAATTATT
* *
15775639 ATTATTTGTTTATATATATAATTAT
1 ATTAATTGTTAATATATATAATTAT
15775664 CTTTTTCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTAATTGTTAATATATATAATTATT
Found at i:15780953 original size:44 final size:42
Alignment explanation
Indices: 15780865--15781372 Score: 397
Period size: 44 Copynumber: 11.5 Consensus size: 42
15780855 GCAGATCAGT
* * *
15780865 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGT-GGAAGTAGATC
* *
15780909 GAAGATGCAGATCTTGTTTTCCCATATTGGTGGCAGAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGG-A-AGTAGATC
* * * * *
15780953 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAATAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTG-GAAGTAGATC
* * * *
15780997 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGAAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGT-GGAAGTAGATC
* * *
15781041 AAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGGAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGT-G-GAAGTAGATC
* * * *
15781085 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCAT-GAAGTAGATT
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGG--TGGAAGTAGATC
* * * *
15781129 GAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGT-GGAAGTAGATC
* * *
15781173 GAAGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGT-G-GAAGTAGATC
* * * * *
15781217 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATT
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTG-GAAGTAGATC
* * * *
15781261 GAAGATAGCAGGTCCTGTCTTTCTATATTGGTAGGAAGCAGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGT-GGAAGTAGATC
** * * *
15781305 GAAGATATAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGT-G-GAAGTAGATC
* *
15781349 GAAGAAAGCAGATCTTGCCTTCCT
1 GAAG-ATGCAGATCTTGTCTTCCT
15781373 GCACCGACAG
Statistics
Matches: 360, Mismatches: 85, Indels: 37
0.75 0.18 0.08
Matches are distributed among these distances:
42 3 0.01
43 87 0.24
44 187 0.52
45 81 0.22
46 1 0.00
47 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
GAAGATGCAGATCTTGTCTTCCTATATTGGTGGAAGTAGATC
Found at i:15781102 original size:132 final size:132
Alignment explanation
Indices: 15780864--15781370 Score: 827
Period size: 132 Copynumber: 3.8 Consensus size: 132
15780854 AGCAGATCAG
*
15780864 TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTTTT
1 TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
* *
15780929 CCCATATTGGTGGC-AGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAATA
66 CCCATACTGGTGGCGA-AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTA
15780993 GAT
130 GAT
* * * *
15780996 CGAAGATAGCAGGTCATGTCTTCCTATATTGGTAGAAAGTGGATCAAAGATGCAGATCTTGTCTT
1 TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
* * *
15781061 CCCATATTGGTGGCGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
66 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
15781126 AT
131 AT
* *
15781128 TGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGACGCAGATCTTGTCTT
1 TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
15781193 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
66 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
15781258 AT
131 AT
* ** ** *
15781260 TGAAGATAGCAGGTCCTGTCTTTCTATATTGGTAGGAAGCAGATCGAAGATATAGATCTTATCTT
1 TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
*
15781325 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGCCTTC
66 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
15781371 CTGCACCGAC
Statistics
Matches: 348, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
132 348 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
TGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
AT
Found at i:15781496 original size:44 final size:44
Alignment explanation
Indices: 15781362--15781591 Score: 132
Period size: 44 Copynumber: 5.3 Consensus size: 44
15781352 GAAAGCAGAT
*
15781362 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGC
** * * * * * *
15781406 CTTGCCTAT-CTG--TTG-CAGCGGAGCAG-GCTAAAAATAGCAGAT
1 CTTGCCT-TCCTGCACCGACAGCGAAGCAGATC-AAAGACACCAG-C
*
15781448 CTTGCCTTCCTGCACCGACAGCGAATCAGATCAAAGACACCAGC
1 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGC
* * **** * * * * * * *
15781492 CTTGCCTCCCCGGGTTG-CAGTGGAGCAG-GCTAAAAATAGCAGAT
1 CTTGCCTTCCTGCACCGACAGCGAAGCAGATC-AAAGACACCAG-C
* *
15781536 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGC
1 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGC
*
15781580 CTTGCCTCCCTG
1 CTTGCCTTCCTG
15781592 GGTTGCAACG
Statistics
Matches: 126, Mismatches: 48, Indels: 24
0.64 0.24 0.12
Matches are distributed among these distances:
40 1 0.01
41 18 0.14
42 12 0.10
43 16 0.13
44 44 0.35
45 33 0.26
46 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.19
Consensus pattern (44 bp):
CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGC
Found at i:15781680 original size:88 final size:88
Alignment explanation
Indices: 15781355--15781668 Score: 497
Period size: 88 Copynumber: 3.6 Consensus size: 88
15781345 GATCGAAGAA
**
15781355 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTATCT--G
1 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGG
15781418 TTGCAGCGGAGCAGGCTAAAAAT
66 TTGCAGCGGAGCAGGCTAAAAAT
* * *
15781441 AGCAGATCTTGCCTTCCTGCACCGACAGCGAATCAGATCAAAGACACCAGCCTTGCCTCCCCGGG
1 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGG
*
15781506 TTGCAGTGGAGCAGGCTAAAAAT
66 TTGCAGCGGAGCAGGCTAAAAAT
*
15781529 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGG
1 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGG
* *
15781594 TTGCAACGGAGCAGGTTAAAAAT
66 TTGCAGCGGAGCAGGCTAAAAAT
* * * *
15781617 AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGACCGATGACCCCAGCC
1 AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
15781669 CTATCTCCCT
Statistics
Matches: 208, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
86 57 0.27
88 151 0.73
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (88 bp):
AGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGG
TTGCAGCGGAGCAGGCTAAAAAT
Found at i:15781785 original size:68 final size:68
Alignment explanation
Indices: 15781670--15781796 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
15781660 ACCCCAGCCC
* *
15781670 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGGAA
1 TATCTCCCTGGTCAGCAGTGGAATAGATTAAAGATTGTGAATACTATCTCCCTGGTCAGTAGGAA
15781735 TTT
66 TTT
* * *
15781738 TATCTCCCTGAG-CAGTAGTGGAATAGATTGAAGATTGT-AGGTACTATCTCCCTGGTCAG
1 TATCTCCCTG-GTCAGCAGTGGAATAGATTAAAGATTGTGA-ATACTATCTCCCTGGTCAG
15781797 CAGTGGAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
67 1 0.02
68 50 0.96
69 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (68 bp):
TATCTCCCTGGTCAGCAGTGGAATAGATTAAAGATTGTGAATACTATCTCCCTGGTCAGTAGGAA
TTT
Found at i:15781853 original size:44 final size:44
Alignment explanation
Indices: 15781738--15781856 Score: 152
Period size: 44 Copynumber: 2.7 Consensus size: 44
15781728 GTAGGAATTT
* * *
15781738 TATCTCCCTGAGCAGTAGTGGAATAGATTGAAGATTGTAGGTAC
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTAGATAC
*
15781782 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-GAATCC
1 TATCTCCCTGAG-CAGCAGTGGAATAGGTTGAAGATTGTAG-ATAC
* *
15781826 TATCTCCCTGAGCAGCAGTAGAGTAGGTTGA
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGA
15781857 GAATAGCAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 63 0.95
45 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTAGATAC
Found at i:15782568 original size:21 final size:21
Alignment explanation
Indices: 15782523--15782599 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 21
15782513 TCTTCAAGGA
*
15782523 TATGTAATCTTAGATATGA--
1 TATGCAATCTTAGATATGATT
15782542 TATGCAATCTTAGATATGATT
1 TATGCAATCTTAGATATGATT
15782563 TATGCAATCTTAGAAGATATGATT
1 TATGCAATCTT---AGATATGATT
*
15782587 T-TGTAATCTTAGA
1 TATGCAATCTTAGA
15782600 GATTTAATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.35
20 3 0.06
21 11 0.22
23 8 0.16
24 11 0.22
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.42
Consensus pattern (21 bp):
TATGCAATCTTAGATATGATT
Found at i:15782598 original size:23 final size:24
Alignment explanation
Indices: 15782534--15782599 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 24
15782524 ATGTAATCTT
15782534 AGATATGA--TATGCAATCTT---
1 AGATATGATTTATGCAATCTTAGA
15782553 AGATATGATTTATGCAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
*
15782577 AGATATGATTT-TGTAATCTTAGA
1 AGATATGATTTATGCAATCTTAGA
15782600 GATTTAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
19 8 0.20
21 11 0.27
23 11 0.27
24 11 0.27
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (24 bp):
AGATATGATTTATGCAATCTTAGA
Found at i:15782924 original size:3 final size:3
Alignment explanation
Indices: 15782916--15782957 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
15782906 TGTTATTAAG
* * *
15782916 TTA TTA TTA TTG TTA TTA TTA TCA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15782958 CTATATATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15782930 original size:20 final size:20
Alignment explanation
Indices: 15782874--15782933 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
15782864 CTTTTTTTAT
* *
15782874 TTATTATTTATTTTTATTAAAT
1 TTATTA-TTATTGTTATT-AAG
*
15782896 TTGATT-TTCTTGTTATTAAG
1 TT-ATTATTATTGTTATTAAG
15782916 TTATTATTATTGTTATTA
1 TTATTATTATTGTTATTA
15782934 TTATCATCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 3 0.09
20 15 0.47
21 9 0.28
22 2 0.06
23 3 0.09
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.65
Consensus pattern (20 bp):
TTATTATTATTGTTATTAAG
Found at i:15783062 original size:18 final size:16
Alignment explanation
Indices: 15783039--15783072 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
15783029 CACATGCACA
15783039 TATTATATATATATATTT
1 TATTAT-TAT-TATATTT
15783057 TATTATTATTATATTT
1 TATTATTATTATATTT
15783073 GCATAACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTATTATTATATTT
Found at i:15783115 original size:17 final size:18
Alignment explanation
Indices: 15783093--15783128 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
15783083 TATATACATA
*
15783093 TATATACATTTAC-ATTT
1 TATATACATATACAATTT
15783110 TATATACATATACAATTT
1 TATATACATATACAATTT
15783128 T
1 T
15783129 TTATTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (18 bp):
TATATACATATACAATTT
Found at i:15783277 original size:23 final size:26
Alignment explanation
Indices: 15783251--15783306 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
15783241 TATTTTTCTA
15783251 AATTA-ATTAATTT-TA-ATATATGT
1 AATTATATTAATTTATATATATATGT
**
15783274 AATTATTATTTGTTTATATATATATGT
1 AATTA-TATTAATTTATATATATATGT
15783301 AATTAT
1 AATTAT
15783307 CTTTTTCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 5 0.19
25 6 0.22
26 3 0.11
27 13 0.48
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (26 bp):
AATTATATTAATTTATATATATATGT
Found at i:15783530 original size:18 final size:18
Alignment explanation
Indices: 15783491--15783534 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
15783481 CTTTGCATGT
*
15783491 TATTGATTTATTTTTATT
1 TATTGATTTATTTTTATA
15783509 TATTGATTTATTTGTT-TA
1 TATTGATTTATTT-TTATA
15783527 TATT-ATTT
1 TATTGATTT
15783535 CTATGCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 18 0.75
19 2 0.08
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (18 bp):
TATTGATTTATTTTTATA
Found at i:15785440 original size:17 final size:17
Alignment explanation
Indices: 15785420--15785454 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15785410 AGGAAATAAA
*
15785420 AAAATATATATGTATAT
1 AAAATATAAATGTATAT
*
15785437 AAAATGTAAATGTATAT
1 AAAATATAAATGTATAT
15785454 A
1 A
15785455 TATGTATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (17 bp):
AAAATATAAATGTATAT
Found at i:15785593 original size:3 final size:3
Alignment explanation
Indices: 15785578--15785624 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
15785568 GTATATATAG
* * *
15785578 TAA TAA TAC TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA GAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
15785625 GTAACTTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Done.