Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 61 of 213
Found at i:16571297 original size:7 final size:7
Alignment explanation
Indices: 16571287--16571311 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
16571277 TTATATACAT
16571287 AATACTA
1 AATACTA
16571294 AATACTA
1 AATACTA
16571301 AATACTA
1 AATACTA
16571308 AATA
1 AATA
16571312 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:16572071 original size:18 final size:17
Alignment explanation
Indices: 16571998--16572093 Score: 70
Period size: 17 Copynumber: 5.5 Consensus size: 17
16571988 GAATCTTTTG
*
16571998 TTTTGAAAACACAAGAA-
1 TTTTG-AAACACGAGAAT
* * *
16572015 TTTTGAAACACAATATT
1 TTTTGAAACACGAGAAT
*
16572032 TTTTGAAAATACG-GAATTTT
1 TTTTG-AAACACGAGAA---T
16572052 TTTTGAAACACGAGAAT
1 TTTTGAAACACGAGAAT
* *
16572069 TTTGGAAACACGAAAAT
1 TTTTGAAACACGAGAAT
16572086 TTTTGAAA
1 TTTTGAAA
16572094 ACCTGAAAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
16 9 0.14
17 34 0.54
18 5 0.08
19 6 0.10
20 9 0.14
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (17 bp):
TTTTGAAACACGAGAAT
Found at i:16572159 original size:17 final size:16
Alignment explanation
Indices: 16572127--16572158 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16572117 AAAATTTGCG
16572127 AAACATGACAATTTTT
1 AAACATGACAATTTTT
*
16572143 AAACATGAGAATTTTT
1 AAACATGACAATTTTT
16572159 TGAGAACACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (16 bp):
AAACATGACAATTTTT
Found at i:16572258 original size:17 final size:17
Alignment explanation
Indices: 16572238--16572294 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
16572228 GAAATACGAG
*
16572238 AATTTTAAAAACATAAA
1 AATTTTAAAAACACAAA
* *
16572255 AA-TTTACAAAACACGAG
1 AATTTTA-AAAACACAAA
* *
16572272 AATTTTAAAAATACAGA
1 AATTTTAAAAACACAAA
16572289 AATTTT
1 AATTTT
16572295 TGAAAAAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
16 4 0.13
17 23 0.74
18 4 0.13
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (17 bp):
AATTTTAAAAACACAAA
Found at i:16572258 original size:34 final size:34
Alignment explanation
Indices: 16572206--16572299 Score: 98
Period size: 34 Copynumber: 2.8 Consensus size: 34
16572196 CAAGAAAAGT
* ** *
16572206 TTTTAAAAGCACGGAAATTTTTGAAATACGAGAA
1 TTTTAAAAACACAAAAATTTTTGAAACACGAGAA
* ***
16572240 TTTTAAAAACATAAAAATTTACAAAACACGAGAA
1 TTTTAAAAACACAAAAATTTTTGAAACACGAGAA
* *
16572274 TTTTAAAAATACAGAAATTTTTGAAA
1 TTTTAAAAACACAAAAATTTTTGAAA
16572300 AAATAGATTT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.30
Consensus pattern (34 bp):
TTTTAAAAACACAAAAATTTTTGAAACACGAGAA
Found at i:16572420 original size:18 final size:18
Alignment explanation
Indices: 16572399--16572654 Score: 156
Period size: 18 Copynumber: 14.5 Consensus size: 18
16572389 GAAAATTTAC
16572399 AAAACAC-AAAAGTTTTTG
1 AAAACACGAAAA-TTTTTG
*
16572417 AAAACACGATAATTTTTG
1 AAAACACGAAAATTTTTG
*
16572435 -AAACATGAAAATTTTTGG
1 AAAACACGAAAATTTTT-G
** ***
16572453 AAAACGTGATTTTTTTTG
1 AAAACACGAAAATTTTTG
*
16572471 AAAACATGAAAATTTTTG
1 AAAACACGAAAATTTTTG
* * **
16572489 -AAACACCAGAACCTTTG
1 AAAACACGAAAATTTTTG
* * *
16572506 TAAACAAGAAAAATTTTG
1 AAAACACGAAAATTTTTG
* *
16572524 AAAACATGAAGATTTTTG
1 AAAACACGAAAATTTTTG
*
16572542 -AAACACGGGAAA-TTTTG
1 AAAACAC-GAAAATTTTTG
* *
16572559 GAAACACGGAAATTTTT-
1 AAAACACGAAAATTTTTG
* *
16572576 AAAACAC-AGGAGTTTTTG
1 AAAACACGA-AAATTTTTG
16572594 AAAA-A-GCAGAAATTTTT-
1 AAAACACG-A-AAATTTTTG
** *
16572611 AAAACACGGGAGTTTTTG
1 AAAACACGAAAATTTTTG
16572629 AAAACACGAAAATTTTTG
1 AAAACACGAAAATTTTTG
16572647 -AAACACGA
1 AAAACACGA
16572655 TTTTTTTTAA
Statistics
Matches: 184, Mismatches: 40, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
17 72 0.39
18 96 0.52
19 16 0.09
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (18 bp):
AAAACACGAAAATTTTTG
Found at i:16572439 original size:35 final size:34
Alignment explanation
Indices: 16572400--16572652 Score: 124
Period size: 35 Copynumber: 7.2 Consensus size: 34
16572390 AAAATTTACA
16572400 AAACACAAAAGTTTTTGAAAACACGATAATTTTTG
1 AAACACAAAAGTTTTTGAAAACACGA-AATTTTTG
* ** **
16572435 AAACATGAAAA-TTTTTGGAAAACGTGATTTTTTTTG
1 AAACA-CAAAAGTTTTT-GAAAACACGA-AATTTTTG
* * **
16572471 AAA-ACATGAAAATTTTTG-AAACACCAGAACCTTTG
1 AAACACA--AAAGTTTTTGAAAACACGA-AATTTTTG
** *
16572506 TAAACA-AGAAAAATTTTGAAAACATGAAGATTTTTG
1 -AAACACA-AAAGTTTTTGAAAACACGAA-ATTTTTG
* * *
16572542 AAACACGGGAAA--TTTTGGAAACACGGAAATTTTTA
1 AAACAC--AAAAGTTTTTGAAAACAC-GAAATTTTTG
** *
16572577 AAACACAGGAGTTTTTGAAAA-AGCAGAAATTTTTA
1 AAACACAAAAGTTTTTGAAAACA-C-GAAATTTTTG
***
16572612 AAACACGGGAGTTTTTGAAAACACGAAAATTTTTG
1 AAACACAAAAGTTTTTGAAAACACG-AAATTTTTG
16572647 AAACAC
1 AAACAC
16572653 GATTTTTTTT
Statistics
Matches: 170, Mismatches: 30, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
33 1 0.01
34 3 0.02
35 112 0.66
36 45 0.26
37 9 0.05
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (34 bp):
AAACACAAAAGTTTTTGAAAACACGAAATTTTTG
Found at i:16572564 original size:53 final size:52
Alignment explanation
Indices: 16572466--16572652 Score: 142
Period size: 53 Copynumber: 3.6 Consensus size: 52
16572456 ACGTGATTTT
* *
16572466 TTTTGAAAACATGAAAATTTTTGAAACACCAGAACCTTTGTAAACAAGAAAAA
1 TTTTGAAAACATGAAAATTTTTGAAACACCAGAAACTTTGGAAACAAG-AAAA
* ** * * *
16572519 TTTTGAAAACATGAAGATTTTTGAAACACGGGAAATTTTGGAAACACGGAAA
1 TTTTGAAAACATGAAAATTTTTGAAACACCAGAAACTTTGGAAACAAGAAAA
* * * * * * * ** * * **
16572571 TTTTTAAAACA-CAGGAGTTTTTGAAAAAGCAGAAATTTTTAAAACACGGGAGT
1 TTTTGAAAACATGA-AAATTTTTGAAACACCAGAAACTTTGGAAACA-AGAAAA
*
16572624 TTTTGAAAACACGAAAATTTTTGAAACAC
1 TTTTGAAAACATGAAAATTTTTGAAACAC
16572653 GATTTTTTTT
Statistics
Matches: 103, Mismatches: 28, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
51 1 0.01
52 36 0.35
53 65 0.63
54 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.28
Consensus pattern (52 bp):
TTTTGAAAACATGAAAATTTTTGAAACACCAGAAACTTTGGAAACAAGAAAA
Found at i:16572653 original size:35 final size:35
Alignment explanation
Indices: 16572519--16572653 Score: 157
Period size: 35 Copynumber: 3.9 Consensus size: 35
16572509 ACAAGAAAAA
* * * **
16572519 TTTTGAAAACATGAAGATTTTTGAAACACGGGAAA
1 TTTTGAAAACACGAAAATTTTTAAAACACGGGAGT
* * *
16572554 TTTTGGAAACACGGAAATTTTTAAAACACAGGAGT
1 TTTTGAAAACACGAAAATTTTTAAAACACGGGAGT
16572589 TTTTGAAAA-A-GCAGAAATTTTTAAAACACGGGAGT
1 TTTTGAAAACACG-A-AAATTTTTAAAACACGGGAGT
*
16572624 TTTTGAAAACACGAAAATTTTTGAAACACG
1 TTTTGAAAACACGAAAATTTTTAAAACACG
16572654 ATTTTTTTTA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 79 0.94
36 2 0.02
37 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (35 bp):
TTTTGAAAACACGAAAATTTTTAAAACACGGGAGT
Found at i:16572972 original size:25 final size:25
Alignment explanation
Indices: 16572924--16572980 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
16572914 TGCCTTATTT
* *
16572924 ATTGAAATTATTTAAATTTTAAAAA
1 ATTGAAATTAATTAAATTTAAAAAA
*
16572949 ATTGAAATTAAATTAAA-TTAAAAAT
1 ATTGAAATT-AATTAAATTTAAAAAA
16572974 A-TGAAAT
1 ATTGAAAT
16572981 ACAAAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 6 0.21
25 16 0.57
26 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (25 bp):
ATTGAAATTAATTAAATTTAAAAAA
Found at i:16573138 original size:4 final size:4
Alignment explanation
Indices: 16573129--16573200 Score: 62
Period size: 4 Copynumber: 18.2 Consensus size: 4
16573119 ATTGAACCTT
* *
16573129 TTTC TTTC TTTTC TTTC TTT- TTTT TCTTC TTT- TTTCC TTT- TTTC CTT-
1 TTTC TTTC -TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C TTTC TTTC TTTC
*
16573176 TTTC TTTC TTTT TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC T
16573201 CTTTTTTTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
3 11 0.20
4 35 0.62
5 10 0.18
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTC
Found at i:16573142 original size:9 final size:9
Alignment explanation
Indices: 16573128--16573200 Score: 71
Period size: 9 Copynumber: 8.1 Consensus size: 9
16573118 AATTGAACCT
16573128 TTTTCTTTC
1 TTTTCTTTC
16573137 TTTTCTTTC
1 TTTTCTTTC
*
16573146 TTTTTTTTC
1 TTTTCTTTC
*
16573155 TTCTTTTTTCC
1 TT-TTCTTT-C
*
16573166 TTTT-TTCC
1 TTTTCTTTC
16573174 TTTTTCTTTC
1 -TTTTCTTTC
16573184 TTTT-TTTC
1 TTTTCTTTC
16573192 -TTTCTTTC
1 TTTTCTTTC
16573200 T
1 T
16573201 CTTTTTTTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
7 3 0.05
8 9 0.16
9 29 0.53
10 11 0.20
11 3 0.05
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:16573154 original size:18 final size:18
Alignment explanation
Indices: 16573126--16573208 Score: 89
Period size: 19 Copynumber: 4.5 Consensus size: 18
16573116 CAAATTGAAC
16573126 CTTTTTCTTTCTTTTCTTT
1 CTTTTT-TTTCTTTTCTTT
*
16573145 CTTTTTTTTCTTCTTTTTT
1 CTTTTTTTTCTT-TTCTTT
* *
16573164 CCTTTTTTCCTTTTTCTTT
1 CTTTTTTTTC-TTTTCTTT
16573183 C-TTTTTTTC-TTTCTTT
1 CTTTTTTTTCTTTTCTTT
16573199 CTCTTTTTTT
1 CT-TTTTTTT
16573209 TCTGTTGGGC
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
16 8 0.15
18 20 0.36
19 25 0.45
20 2 0.04
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
CTTTTTTTTCTTTTCTTT
Found at i:16573210 original size:38 final size:37
Alignment explanation
Indices: 16573137--16573207 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
16573127 TTTTTCTTTC
16573137 TTTTCTTTCTTTTTTTTCTTCTTTTTTCCTTTTTTCCT
1 TTTTCTTTCTTTTTTTTCTTCTTTTTT-CTTTTTTCCT
*
16573175 TTTTCTTTC-TTTTTTTCTT-TCTTTCTCTTTTTT
1 TTTTCTTTCTTTTTTTTCTTCT-TTTTTCTTTTTT
16573208 TTCTGTTGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 8 0.26
37 14 0.45
38 9 0.29
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (37 bp):
TTTTCTTTCTTTTTTTTCTTCTTTTTTCTTTTTTCCT
Found at i:16573493 original size:13 final size:13
Alignment explanation
Indices: 16573477--16573602 Score: 82
Period size: 13 Copynumber: 9.4 Consensus size: 13
16573467 TGCTTTATTA
16573477 TTTTTCTTTTTCC
1 TTTTTCTTTTTCC
16573490 TTTTTCTTTTT-C
1 TTTTTCTTTTTCC
16573502 TTTTT-TTTTTCTC
1 TTTTTCTTTTTC-C
16573515 TTTTTCTATTTT-C
1 TTTTTCT-TTTTCC
* *
16573528 -TATT-TTTTTCTA
1 TTTTTCTTTTTC-C
*
16573540 TTTTTCTTTTTTC
1 TTTTTCTTTTTCC
16573553 TTTCTTCTTCTTTCTTC
1 TTT-TTCTT-TTTC--C
* *
16573570 TTCTTCTTCTTCC
1 TTTTTCTTTTTCC
*
16573583 TTCTTTCTTTCTTTC
1 TT-TTTCTTT-TTCC
16573598 TTTTT
1 TTTTT
16573603 TTTCTTCTTC
Statistics
Matches: 88, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
10 4 0.05
11 6 0.07
12 9 0.10
13 27 0.31
14 19 0.22
15 15 0.17
16 5 0.06
17 3 0.03
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCTTTTTCC
Found at i:16573501 original size:19 final size:18
Alignment explanation
Indices: 16573477--16573611 Score: 96
Period size: 19 Copynumber: 7.1 Consensus size: 18
16573467 TGCTTTATTA
16573477 TTTTTCTTTTTCCTTTTTC
1 TTTTTCTTTTT-CTTTTTC
*
16573496 TTTTTCTTTTTTTTTTCTC
1 TTTTTCTTTTTCTTTT-TC
16573515 TTTTTCTATTTTCTATTTT-
1 TTTTTCT-TTTTCT-TTTTC
* *
16573534 TTTCTATTTTTCTTTTTTC
1 TTTTTCTTTTTC-TTTTTC
*
16573553 TTTCTTCTTCTTTCTTCTTC
1 TTT-TTCTT-TTTCTTTTTC
* *
16573573 TTCTTCTTCCTTCTTTCTT-
1 TTTTTCTT-TTTCTTT-TTC
*
16573592 TCTTTCTTTTT-TTTCTTC
1 TTTTTCTTTTTCTTT-TTC
16573610 TT
1 TT
16573612 CTCTCGGATC
Statistics
Matches: 93, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.06
18 16 0.17
19 46 0.49
20 18 0.19
21 7 0.08
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTTCTTTTTC
Found at i:16573526 original size:7 final size:6
Alignment explanation
Indices: 16573477--16573611 Score: 96
Period size: 6 Copynumber: 21.3 Consensus size: 6
16573467 TGCTTTATTA
*
16573477 TTTTTC TTTTTCC TTTTTC TTTTTC TTTTTT TTTTCTC TTTTTC TATTTTC
1 TTTTTC TTTTT-C TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC T-TTTTC
* * * *
16573528 TATTTT- TTTCTA TTTTTC TTTTTTC TTTCTTC TTCTTTC TTCTTC TTCTTC
1 T-TTTTC TTTTTC TTTTTC -TTTTTC TTT-TTC TT-TTTC TTTTTC TTTTTC
* *
16573579 TTCCTTC TTTCTT- TCTTTC TTTTT- TTTCTTC TT
1 TT-TTTC TTT-TTC TTTTTC TTTTTC TTT-TTC TT
16573612 CTCTCGGATC
Statistics
Matches: 108, Mismatches: 9, Indels: 23
0.77 0.06 0.16
Matches are distributed among these distances:
5 8 0.07
6 51 0.47
7 48 0.44
8 1 0.01
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:16573562 original size:3 final size:3
Alignment explanation
Indices: 16573554--16573613 Score: 57
Period size: 3 Copynumber: 18.3 Consensus size: 3
16573544 TCTTTTTTCT
*
16573554 TTC TTC TTC TTTC TTC TTC TTC TTC TTCC TTC TTTC TTTC TTTC TTT
1 TTC TTC TTC -TTC TTC TTC TTC TTC TT-C TTC -TTC -TTC -TTC TTC
*
16573601 TTT TTC TTC TTC T
1 TTC TTC TTC TTC T
16573614 CTCGGATCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
3 35 0.67
4 17 0.33
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:16574183 original size:30 final size:30
Alignment explanation
Indices: 16574149--16574278 Score: 97
Period size: 30 Copynumber: 4.4 Consensus size: 30
16574139 AAGAGTTTAG
*
16574149 GGGTCAAAGTG-AAATTTTGAGAAAGTATAA
1 GGGTCAAAATGTAAATTTT-AGAAAGTATAA
* * * * **
16574179 GGGTCGAAAT-TTAATTTTAGAAATTTTTG
1 GGGTCAAAATGTAAATTTTAGAAAGTATAA
* *
16574208 GGGTCAAAATGTAAATTTTAGAAAATTTTAA
1 GGGTCAAAATGTAAATTTTAG-AAAGTATAA
* *
16574239 -GGTCAAAATGTAAATTTT-GAAAAGTACAG
1 GGGTCAAAATGTAAATTTTAG-AAAGTATAA
*
16574268 GGGTTAAAATG
1 GGGTCAAAATG
16574279 CAAAAAAAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
29 23 0.29
30 50 0.62
31 7 0.09
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (30 bp):
GGGTCAAAATGTAAATTTTAGAAAGTATAA
Found at i:16574211 original size:29 final size:30
Alignment explanation
Indices: 16574088--16574261 Score: 110
Period size: 30 Copynumber: 5.9 Consensus size: 30
16574078 GCAAAGCTTC
* *
16574088 TGGGG-CAAAAGTGT-AATTTTAGCAAAAATA
1 TGGGGTCAAAA-TGTAAATTTTAG-AAAATTT
* * * *
16574118 TGGGCT-AAAATGTAATTTCTTA-AGAGTTT
1 TGGGGTCAAAATGTAAATT-TTAGAAAATTT
* * * *
16574147 AGGGGTCAAAGTG-AAATTTTGAGAAAGTAT
1 TGGGGTCAAAATGTAAATTTT-AGAAAATTT
** * * *
16574177 AAGGGTCGAAAT-TTAATTTTAGAAATTTT
1 TGGGGTCAAAATGTAAATTTTAGAAAATTT
16574206 TGGGGTCAAAATGTAAATTTTAGAAAATTT
1 TGGGGTCAAAATGTAAATTTTAGAAAATTT
**
16574236 TAAGGTCAAAATGTAAATTTT-GAAAA
1 TGGGGTCAAAATGTAAATTTTAGAAAA
16574262 GTACAGGGGT
Statistics
Matches: 111, Mismatches: 25, Indels: 17
0.73 0.16 0.11
Matches are distributed among these distances:
28 2 0.02
29 36 0.32
30 70 0.63
31 3 0.03
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (30 bp):
TGGGGTCAAAATGTAAATTTTAGAAAATTT
Found at i:16574564 original size:75 final size:74
Alignment explanation
Indices: 16574476--16575663 Score: 417
Period size: 77 Copynumber: 15.5 Consensus size: 74
16574466 GGCGTGCGAA
* * *
16574476 CCGAGACTCAACTCACCTCTTGGATTATGAGTTTATCTTCGAAAAACAAAAATCG-AAAAT-ACA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACAAAAATCGAAAAATAAC-
*
16574539 TCGACATGTGCC
65 TCGAC--GTGAC
* * * * * *
16574551 CCGAGGCTCAACTCACCTCTCAGAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAATAACT
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACAAAAATCGAAAAATAACT
*
16574616 CGGCGTGAC
66 CGACGTGAC
* * * * * * **
16574625 CCGAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACA-AAA-ATCGAA-AAATA
* * * **
16574690 CCTCGGCATGGT
63 ACTCGACGTGAC
* * * * * * * * **
16574702 CCAAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTGAAAAACAGAAATTTAAAAGAAGTA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACA-AAAATCGAAA-AA-TA
* *
16574767 CCTC-AGCATGAC
63 ACTCGA-CGTGAC
* * * ** **
16574779 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAATA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAAC--AAAAATCGAA-AAATA
* * *
16574843 CCTCGGCATGAC
63 ACTCGACGTGAC
* * * ** **
16574855 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAATA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAAC--AAAAATCGAA-AAATA
* * *
16574919 CCTCGGCATGAC
63 ACTCGACGTGAC
** * * * ** ** *
16574931 CCGAAACTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAACA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACAAAAATCGAAAA-ATA-A
* *
16574995 CCTCGGCATGAC
64 -CTCGACGTGAC
** * ** * **
16575007 CCGAGGCTCAACTCACCTCT-ATATTATGAGTTGATTTTTTAAAAAAGCAGAAATTTAAAAAAAA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCGAAAAA-CA-AAA-AT-CGAAAAA
*
16575071 TACCTC-AGCGTGAC
61 TAACTCGA-CGTGAC
* * * * * **
16575085 CCGAGGCTCAACTCATCTCT-GTATTATGAGTTGATTTTTTGAAAAAAAATAGAAATTAAAAAAA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCG-AAAAACA-A-AAA-T-CGAAAA
*
16575149 ATACCTC-AGCGTGAC
60 ATAACTCGA-CGTGAC
* * * * * **
16575164 CTGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAAGCAGAAATTAAAAAAAA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCG-AAAAA-CA-AAAAT-CGAAAAA
* *
16575228 TACCTC-AGTGTGAC
61 TAACTCGA-CGTGAC
* * * ** * * *
16575242 CCAAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTAAAAAAAGACATAAAT-TAAAAATAC
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTT-CGAAAA-ACAAAAATCGAAAAATAA
16575305 CTC-AGCGTGAC
64 CTCGA-CGTGAC
* * * * * **
16575316 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTAATTTTTGAAAAAAAGTAGAAATTTAAAAAAA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACA--A-AAA--TCGAAAAA
*
16575380 TACCTC-AGCGTGAC
61 TAACTCGA-CGTGAC
* * * * **
16575394 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAAACAGAAATTAAAAAAAT
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCG--AAAAACA-AAAATCGAAAAAT
*
16575458 ACCTC-AGCGTGAC
62 AACTCGA-CGTGAC
* * * * **
16575471 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAAGCAGAAATTAAAAAAAT
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCG-AAAAA-CA-AAAATCGAAAAAT
* *
16575535 ACCTC-AGTGTGAC
62 AACTCGA-CGTGAC
* * * * *
16575548 CCGAGACTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAATCAGAAATTAAATTGAAA
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGA-TCTTCGAAAAA-C---AA--AAATCG-AA
*
16575612 AAATACCTC-AGCGTGAC
58 AAATAACTCGA-CGTGAC
* *
16575629 CCGAGGCTCAACTCACTTCT-GTATTATGAGTTGAT
1 CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGAT
16575664 TTTTTGAAAA
Statistics
Matches: 965, Mismatches: 105, Indels: 81
0.84 0.09 0.07
Matches are distributed among these distances:
72 2 0.00
73 6 0.01
74 107 0.11
75 52 0.05
76 231 0.24
77 250 0.26
78 159 0.16
79 88 0.09
80 10 0.01
81 60 0.06
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (74 bp):
CCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATCTTCGAAAAACAAAAATCGAAAAATAACT
CGACGTGAC
Found at i:16574845 original size:76 final size:76
Alignment explanation
Indices: 16574550--16575690 Score: 1421
Period size: 76 Copynumber: 14.8 Consensus size: 76
16574540 CGACATGTGC
* * *
16574550 CCCGAGGCTCAACTCACCTCTCAG-AATATGAGTTGATTTTTGAAAAACATAAA-TT--GAAAAA
1 CCCGAGGCTCAACTCACCTCT--GTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAA
* *
16574611 TAACTCGGCGTGA
64 TACCTCAGCGTGA
* * * *
16574624 CCCGAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAAT
1 CCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAAT
* * *
16574689 ACCTCGGCATGG
65 ACCTCAGCGTGA
* * * * * * * *
16574701 TCCAAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTGAAAAACAGAAATTTAAAAGAAGT
1 CCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAAT
*
16574766 ACCTCAGCATGA
65 ACCTCAGCGTGA
* *
16574778 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAATA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAATA
* *
16574843 CCTCGGCATGA
66 CCTCAGCGTGA
* *
16574854 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAATA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAATA
* *
16574919 CCTCGGCATGA
66 CCTCAGCGTGA
** * * *
16574930 CCCGAAACTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACGGAAATTTAAAAGAAACA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAATA
* *
16574995 CCTCGGCATGA
66 CCTCAGCGTGA
* *
16575006 CCCGAGGCTCAACTCACCTCTATATTATGAGTTGATTTTTTAAAAAAGCAGAAATTTAAAAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAA-CAGAAATTTAAAAAAAA
16575071 TACCTCAGCGTGA
64 TACCTCAGCGTGA
* *
16575084 CCCGAGGCTCAACTCATCTCTGTATTATGAGTTGATTTTTTGAAAAAAAATAGAAA-TTAAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG---AAAAACAGAAATTTAAAAAA
16575148 AATACCTCAGCGTGA
62 AATACCTCAGCGTGA
*
16575163 CCTGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCAGAAA-TTAAAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG-AAAAA-CAGAAATTTAAAAAAA
*
16575227 ATACCTCAGTGTGA
63 ATACCTCAGCGTGA
* * *
16575241 CCCAAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTT-AAAAAAAGACA--TAAATTAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAA--AAAAA
16575302 TACCTCAGCGTGA
64 TACCTCAGCGTGA
* *
16575315 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTAATTTTTGAAAAAAAGTAGAAATTT-AAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTG--AAAAA-CAGAAATTTAAAAAAA
16575379 ATACCTCAGCGTGA
63 ATACCTCAGCGTGA
16575393 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACAGAAA-TT-AAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG--AAAAACAGAAATTTAAAAAAA
16575456 ATACCTCAGCGTGA
63 ATACCTCAGCGTGA
16575470 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCAGAAA-TT-AAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG-AAAAA-CAGAAATTTAAAAAAA
*
16575533 ATACCTCAGTGTGA
63 ATACCTCAGCGTGA
* *
16575547 CCCGAGACTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAATCAGAAATTAAATTGAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAA-CAGAAATTTAA---AAA
16575612 AAATACCTCAGCGTGA
61 AAATACCTCAGCGTGA
* *
16575628 CCCGAGGCTCAACTCACTTCTGTATTATGAGTTGATTTTTTGAAAAAAACAGAATTTTAAAAA
1 CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG--AAAAACAGAAATTTAAAAA
16575691 TATTTCTTGA
Statistics
Matches: 970, Mismatches: 69, Indels: 51
0.89 0.06 0.05
Matches are distributed among these distances:
72 4 0.00
73 5 0.01
74 101 0.10
75 6 0.01
76 251 0.26
77 248 0.26
78 187 0.19
79 83 0.09
80 7 0.01
81 64 0.07
82 9 0.01
83 5 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (76 bp):
CCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAAAATA
CCTCAGCGTGA
Found at i:16575720 original size:30 final size:30
Alignment explanation
Indices: 16575662--16575720 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
16575652 TTATGAGTTG
* *
16575662 ATTTTTTGAAAAAAACAGAATTTTAAAAAT
1 ATTTCTTGAAAAAAACAGAATTTCAAAAAT
* **
16575692 ATTTCTTGAAAGAAACAGGGTTTCAAAAA
1 ATTTCTTGAAAAAAACAGAATTTCAAAAA
16575721 AACCTCAAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (30 bp):
ATTTCTTGAAAAAAACAGAATTTCAAAAAT
Found at i:16576577 original size:16 final size:16
Alignment explanation
Indices: 16576558--16576601 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
16576548 TTCTCTTCTT
16576558 TTTTTGTTTTTTCCCC
1 TTTTTGTTTTTTCCCC
16576574 TTTTTGTTTTTTCCCC
1 TTTTTGTTTTTTCCCC
16576590 TTTTTGTTTTTT
1 TTTTTGTTTTTT
16576602 GTTTTGTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.07, T:0.75
Consensus pattern (16 bp):
TTTTTGTTTTTTCCCC
Found at i:16582358 original size:16 final size:17
Alignment explanation
Indices: 16582322--16582363 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16582312 GAATCTCTTG
16582322 TTTTGAAAACACAAGA-A
1 TTTTG-AAACACAAGATA
* *
16582339 TTTTGAAACACAATATT
1 TTTTGAAACACAAGATA
16582356 TTTTGAAA
1 TTTTGAAA
16582364 ATGCGGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (17 bp):
TTTTGAAACACAAGATA
Found at i:16582401 original size:17 final size:17
Alignment explanation
Indices: 16582376--16582624 Score: 84
Period size: 17 Copynumber: 14.5 Consensus size: 17
16582366 GCGGAATTTT
*
16582376 TTTTTGAAACACGAGAA
1 TTTTTGAAACACGAAAA
*
16582393 TTTTGGAAACACGAAAA
1 TTTTTGAAACACGAAAA
16582410 TTTTTGAAA-ACCTGAAAAAAA
1 TTTTTGAAACA-C-G---AAAA
*
16582431 ATTTT--AACACGAAAA
1 TTTTTGAAACACGAAAA
** * *
16582446 TTTGCGAAACATGACAA
1 TTTTTGAAACACGAAAA
* *
16582463 TTTTT-AAACATGAGAAT
1 TTTTTGAAACACGA-AAA
16582480 TTTTTGAGAACACG-AAA
1 TTTTTGA-AACACGAAAA
* *
16582497 ----TAAAACACGGAAA
1 TTTTTGAAACACGAAAA
*
16582510 TTTGTGAAACACAAGAAAA
1 TTTTTGAAACAC--GAAAA
* *
16582529 GTTTTTAAAAGCACGGAAA
1 -TTTTTGAAA-CACGAAAA
* *
16582548 TTTTTGAAATACGAGAA
1 TTTTTGAAACACGAAAA
** **
16582565 TTTTAAAAACATAAAAA
1 TTTTTGAAACACGAAAA
*** *
16582582 TTTACAAAACACGAGAA
1 TTTTTGAAACACGAAAA
*** *
16582599 TTTAAAAAATACGAAAA
1 TTTTTGAAACACGAAAA
16582616 TTTTTGAAA
1 TTTTTGAAA
16582625 AAAATAGATT
Statistics
Matches: 170, Mismatches: 42, Indels: 40
0.67 0.17 0.16
Matches are distributed among these distances:
12 6 0.04
13 5 0.03
15 6 0.04
16 9 0.05
17 98 0.58
18 11 0.06
19 16 0.09
20 8 0.05
21 11 0.06
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.27
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:16582473 original size:16 final size:16
Alignment explanation
Indices: 16582452--16582483 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16582442 AAAATTTGCG
16582452 AAACATGACAATTTTT
1 AAACATGACAATTTTT
*
16582468 AAACATGAGAATTTTT
1 AAACATGACAATTTTT
16582484 TGAGAACACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (16 bp):
AAACATGACAATTTTT
Found at i:16582698 original size:17 final size:17
Alignment explanation
Indices: 16582675--16582740 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
16582665 TTTTTTTCAA
16582675 AAAATACGAAAGTTTAT
1 AAAATACGAAAGTTTAT
* *
16582692 GAAATACGAGAA-TTTAA
1 AAAATACGA-AAGTTTAT
* *
16582709 AAAATACGAAAATTTAC
1 AAAATACGAAAGTTTAT
*
16582726 AAAACACGAAAGTTT
1 AAAATACGAAAGTTT
16582741 TTGAAAACAC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
16 2 0.05
17 37 0.90
18 2 0.05
ACGTcount: A:0.55, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAATACGAAAGTTTAT
Found at i:16582747 original size:18 final size:17
Alignment explanation
Indices: 16582726--16582978 Score: 144
Period size: 18 Copynumber: 14.5 Consensus size: 17
16582716 GAAAATTTAC
16582726 AAAACACGAAAGTTTTTG
1 AAAACACGAAA-TTTTTG
16582744 AAAACACGATAATTTTTG
1 AAAACACGA-AATTTTTG
*
16582762 -AAAGA--AAATTTTTGG
1 AAAACACGAAATTTTT-G
** **
16582777 AAAACGTGATTTTTTTTG
1 AAAACACGA-AATTTTTG
*
16582795 AAAACATGAAAATTTTTG
1 AAAACACG-AAATTTTTG
* **
16582813 -AAACACCGGAACCTTTG
1 AAAACA-CGAAATTTTTG
* *
16582830 TAAACAAGAAAATTTTTG
1 AAAACACG-AAATTTTTG
*
16582848 AAAACATGAAGATTTTTG
1 AAAACACGAA-ATTTTTG
*
16582866 -AAACACGGGAATTTTTG
1 AAAACAC-GAAATTTTTG
*
16582883 GAAACACGGAAATTTTT-
1 AAAACAC-GAAATTTTTG
* * *
16582900 AAAACGCAGGAGTTTTTG
1 AAAACAC-GAAATTTTTG
*
16582918 AAAACGCGGAAATTTTT-
1 AAAACAC-GAAATTTTTG
* *
16582935 AAAACACGGGAGTTTTTG
1 AAAACAC-GAAATTTTTG
16582953 AAAACACGAAAATTTTTG
1 AAAACACG-AAATTTTTG
16582971 -AAACACGA
1 AAAACACGA
16582979 TTTTTTTTAA
Statistics
Matches: 185, Mismatches: 34, Indels: 34
0.73 0.13 0.13
Matches are distributed among these distances:
14 7 0.04
15 2 0.01
16 4 0.02
17 64 0.35
18 100 0.54
19 8 0.04
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (17 bp):
AAAACACGAAATTTTTG
Found at i:16582870 original size:35 final size:34
Alignment explanation
Indices: 16582727--16582975 Score: 123
Period size: 35 Copynumber: 7.1 Consensus size: 34
16582717 AAAATTTACA
* * *
16582727 AAACACGAAAGTTTTTGAAAACACGATAATTTTTG
1 AAACAAGAAAATTTTTGAAAACAGGA-AATTTTTG
**
16582762 --A-AAGAAAATTTTTGGAAAAC-GTGATTTTTTTTG
1 AAACAAGAAAATTTTT-GAAAACAG-GA-AATTTTTG
* * **
16582795 AAAACATGAAAATTTTTGAAACACCGG-AACCTTTG
1 -AAACAAGAAAATTTTTGAAA-ACAGGAAATTTTTG
*
16582830 TAAACAAGAAAATTTTTGAAAACATGAAGATTTTTG
1 -AAACAAGAAAATTTTTGAAAACAGGAA-ATTTTTG
* ** * *
16582866 AAACACGGGAATTTTTGGAAACACGGAAATTTTTA
1 AAACAAGAAAATTTTTGAAAACA-GGAAATTTTTG
* * * * *
16582901 AAACGCAG-GAGTTTTTGAAAACGCGGAAATTTTTA
1 AAAC-AAGAAAATTTTTGAAAAC-AGGAAATTTTTG
* ** * *
16582936 AAACACGGGAGTTTTTGAAAACACGAAAATTTTTG
1 AAACAAGAAAATTTTTGAAAACA-GGAAATTTTTG
16582971 AAACA
1 AAACA
16582976 CGATTTTTTT
Statistics
Matches: 167, Mismatches: 32, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
32 10 0.06
33 16 0.10
34 4 0.02
35 108 0.65
36 14 0.08
37 14 0.08
38 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (34 bp):
AAACAAGAAAATTTTTGAAAACAGGAAATTTTTG
Found at i:16582969 original size:53 final size:53
Alignment explanation
Indices: 16582726--16582977 Score: 194
Period size: 53 Copynumber: 4.8 Consensus size: 53
16582716 GAAAATTTAC
* * *
16582726 AAAACACGAAAGTTTTTGAAAACACGATAATTTTTG-AA-A-GAAAATTTTTGG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTGAAACACGGAAATTTTT-G
** *** * **
16582777 AAAACGTGATTTTTTTTGAAAACATGAAAATTTTTGAAACACCGG-AACCTTTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTGAAACA-CGGAAATTTTTG
* * * * *
16582830 TAAACAAGAAAATTTTTGAAAACATGAAGATTTTTGAAACACGGGAATTTTTG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTGAAACACGGAAATTTTTG
* * * * * *
16582883 GAAACACGGAAATTTTT-AAAACGC-AGGAGTTTTTGAAAACGCGGAAATTTTT-
1 AAAACACGAAAATTTTTGAAAACACGA-AAATTTTTG-AAACACGGAAATTTTTG
** *
16582935 AAAACACGGGAGTTTTTGAAAACACGAAAATTTTTGAAACACG
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTTGAAACACG
16582978 ATTTTTTTTA
Statistics
Matches: 156, Mismatches: 36, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
51 30 0.19
52 36 0.23
53 83 0.53
54 6 0.04
55 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (53 bp):
AAAACACGAAAATTTTTGAAAACACGAAAATTTTTGAAACACGGAAATTTTTG
Found at i:16582976 original size:35 final size:35
Alignment explanation
Indices: 16582842--16582977 Score: 173
Period size: 35 Copynumber: 3.9 Consensus size: 35
16582832 AACAAGAAAA
* * * *
16582842 TTTTTGAAAACATGAAGATTTTTGAAACACGGGAA
1 TTTTTGAAAACACGAAAATTTTTAAAACACGGGAG
* * * *
16582877 TTTTTGGAAACACGGAAATTTTTAAAACGCAGGAG
1 TTTTTGAAAACACGAAAATTTTTAAAACACGGGAG
* *
16582912 TTTTTGAAAACGCGGAAATTTTTAAAACACGGGAG
1 TTTTTGAAAACACGAAAATTTTTAAAACACGGGAG
*
16582947 TTTTTGAAAACACGAAAATTTTTGAAACACG
1 TTTTTGAAAACACGAAAATTTTTAAAACACG
16582978 ATTTTTTTTA
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 86 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTAAAACACGGGAG
Found at i:16583277 original size:26 final size:26
Alignment explanation
Indices: 16583248--16583297 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16583238 TGCCTTATTT
*
16583248 ATTGAAATT-ATTTAAATTTAAAAAAA
1 ATTGAAATTAAATTAAA-TTAAAAAAA
16583274 ATTGAAATTAAATTAAATTAAAAA
1 ATTGAAATTAAATTAAATTAAAAA
16583298 TATGAAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (26 bp):
ATTGAAATTAAATTAAATTAAAAAAA
Found at i:16583464 original size:4 final size:4
Alignment explanation
Indices: 16583455--16583527 Score: 68
Period size: 4 Copynumber: 19.2 Consensus size: 4
16583445 ATTGAACCTT
*
16583455 TTTC TTTC TTTTC TTTC TTT- TTT- TTTC -TTC TTT- TTTCC TTTT TTTC
1 TTTC TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC
*
16583501 -TT- TTTC TTTC TTTT TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
16583528 CTTTTTTTTC
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
3 16 0.28
4 35 0.60
5 7 0.12
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (4 bp):
TTTC
Found at i:16583468 original size:9 final size:8
Alignment explanation
Indices: 16583453--16583535 Score: 87
Period size: 9 Copynumber: 9.6 Consensus size: 8
16583443 AAATTGAACC
16583453 TTTTTCTT
1 TTTTTCTT
16583461 TCTTTTCTT
1 T-TTTTCTT
16583470 TCTTTT-TT
1 T-TTTTCTT
16583478 TTTCTTCTT
1 TTT-TTCTT
*
16583487 TTTTCCTT
1 TTTTTCTT
16583495 TTTTTCTTT
1 TTTTTC-TT
16583504 TTCTTTCTT
1 TT-TTTCTT
16583513 TTTTTCTT
1 TTTTTCTT
16583521 TCTTTCTCTT
1 T-TTT-TCTT
16583531 TTTTT
1 TTTTT
16583536 TCTGTTGGGC
Statistics
Matches: 66, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
7 2 0.03
8 23 0.35
9 32 0.48
10 9 0.14
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTT
Found at i:16583476 original size:10 final size:10
Alignment explanation
Indices: 16583452--16583538 Score: 92
Period size: 10 Copynumber: 8.8 Consensus size: 10
16583442 CAAATTGAAC
16583452 CTTTTTCTTT
1 CTTTTTCTTT
16583462 C-TTTTCTTT
1 CTTTTTCTTT
*
16583471 CTTTTTTTTT
1 CTTTTTCTTT
16583481 CTTCTTT-TTT
1 CTT-TTTCTTT
*
16583491 CCTTTT-TTT
1 CTTTTTCTTT
16583500 CTTTTTCTTT
1 CTTTTTCTTT
16583510 CTTTTTTTCTTT
1 C--TTTTTCTTT
*
16583522 CTTTCTCTTT
1 CTTTTTCTTT
16583532 -TTTTTCT
1 CTTTTTCT
16583539 GTTGGGCCGG
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
9 26 0.39
10 28 0.42
11 3 0.04
12 10 0.15
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
CTTTTTCTTT
Found at i:16583476 original size:19 final size:19
Alignment explanation
Indices: 16583452--16583538 Score: 88
Period size: 19 Copynumber: 4.4 Consensus size: 19
16583442 CAAATTGAAC
16583452 CTTTTTCTTTCTTTTCTTT
1 CTTTTTCTTTCTTTTCTTT
* *
16583471 CTTTTTTTTTCTTCTTTTTT
1 CTTTTTCTTTCTT-TTCTTT
*
16583491 CCTTTT-TTTCTTTTTCTTT
1 CTTTTTCTTTC-TTTTCTTT
16583510 CTTTTTTTCTTTCTTTCTCTTT
1 C--TTTTTCTTTCTTT-TCTTT
16583532 -TTTTTCT
1 CTTTTTCT
16583539 GTTGGGCCGG
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
19 29 0.51
20 12 0.21
21 7 0.12
22 9 0.16
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
CTTTTTCTTTCTTTTCTTT
Found at i:16583821 original size:7 final size:6
Alignment explanation
Indices: 16583806--16583939 Score: 112
Period size: 6 Copynumber: 21.2 Consensus size: 6
16583796 TGCTTTATTA
16583806 TTTTTC TTTTTCC TTTTTC TTTTTC TTTTT- TTTTCTC TTTTTC TCTTTTC
1 TTTTTC TTTTT-C TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC T-TTTTC
* * *
16583856 TTTTT- TTTCTC TTTTTC TATTTTC TTTCTTC TTCTTTC TTCTTC TTCTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTT-TTC TT-TTTC TTTTTC TTTTTC
* *
16583906 TTCCTTC TTTCTTTC TTTCTT- TTTTTC TTCTTC T
1 TT-TTTC -TT-TTTC TTT-TTC TTTTTC TTTTTC T
16583940 CTCGGATCTA
Statistics
Matches: 111, Mismatches: 5, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
5 10 0.09
6 54 0.49
7 40 0.36
8 7 0.06
ACGTcount: A:0.01, C:0.23, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTC
Found at i:16583840 original size:16 final size:16
Alignment explanation
Indices: 16583807--16583937 Score: 86
Period size: 16 Copynumber: 7.8 Consensus size: 16
16583797 GCTTTATTAT
16583807 TTTTCTTTTTCCTTTTTC
1 TTTT-TTTTT-CTTTTTC
16583825 TTTTTCTTTT-TTTTTC
1 TTTTT-TTTTCTTTTTC
* *
16583841 TCTTTTTCTC-TTTTC
1 TTTTTTTTTCTTTTTC
16583856 TTTTTTTTCTCTTTTTC
1 TTTTTTTT-TCTTTTTC
* *
16583873 TATTTTCTTTCTTCTTC
1 T-TTTTTTTTCTTTTTC
* * *
16583890 TTTCTTCTTCTTCTTC
1 TTTTTTTTTCTTTTTC
* *
16583906 TTCCTTCTTTCTTTCTTTC
1 TT-TTTTTTTC-TT-TTTC
16583925 TTTTTTTCTTCTT
1 TTTTTTT-TTCTT
16583938 CTCTCGGATC
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
15 14 0.16
16 26 0.30
17 19 0.22
18 21 0.24
19 8 0.09
ACGTcount: A:0.01, C:0.23, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTCTTTTTC
Found at i:16583889 original size:3 final size:3
Alignment explanation
Indices: 16583881--16583939 Score: 57
Period size: 3 Copynumber: 18.3 Consensus size: 3
16583871 TCTATTTTCT
16583881 TTC TTC TTC TTTC TTC TTC TTC TTC TTCC TTC TTTC TTTC TTTC TT-
1 TTC TTC TTC -TTC TTC TTC TTC TTC TT-C TTC -TTC -TTC -TTC TTC
*
16583927 TTT TTC TTC TTC T
1 TTC TTC TTC TTC T
16583940 CTCGGATCTA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
2 2 0.04
3 32 0.63
4 17 0.33
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:16584540 original size:30 final size:30
Alignment explanation
Indices: 16584463--16584555 Score: 102
Period size: 30 Copynumber: 3.1 Consensus size: 30
16584453 ATTTCTTAAG
*
16584463 AGTTTAGGGGTCAAAGTG-AAATTTTA-AGAA
1 AGTTTA-GGGTCAAAATGTAAATTTTAGA-AA
* *
16584493 AGTATAAGGGTCTAAATGTAAATTTTAGAAA
1 AGT-TTAGGGTCAAAATGTAAATTTTAGAAA
*
16584524 AGTTTAGGGCCAAAATGTAAATTTT-GAAA
1 AGTTTAGGGTCAAAATGTAAATTTTAGAAA
16584553 AGT
1 AGT
16584556 ACATGGTTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 7 0.13
30 31 0.57
31 15 0.28
32 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.31
Consensus pattern (30 bp):
AGTTTAGGGTCAAAATGTAAATTTTAGAAA
Found at i:16585446 original size:31 final size:30
Alignment explanation
Indices: 16585410--16585475 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 30
16585400 GCCATTGATG
16585410 AAAATATAAAAAAAATTAAAATTATTTTTAA
1 AAAATATAAAAAAAATTAAAATTA-TTTTAA
** *
16585441 AAAATATAAAAAATTTTAAATTTATTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAA
16585471 AAAAT
1 AAAAT
16585476 GAAATTGAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATATAAAAAAAATTAAAATTATTTTAA
Found at i:16585456 original size:20 final size:20
Alignment explanation
Indices: 16585419--16585457 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
16585409 GAAAATATAA
*
16585419 AAAAAATTAAAATTATTTTT
1 AAAAAATTAAAATAATTTTT
16585439 AAAAAATATAAAA-AATTTT
1 AAAAAAT-TAAAATAATTTT
16585458 AAATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAAATTAAAATAATTTTT
Found at i:16585462 original size:30 final size:31
Alignment explanation
Indices: 16585410--16585475 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
16585400 GCCATTGATG
16585410 AAAATATAAAAAAAATTAAAA-TTATTTTTAA
1 AAAATATAAAAAAAATTAAAATTTA-TTTTAA
* *
16585441 AAAATAT-AAAAAATTTTAAATTTATTTTAA
1 AAAATATAAAAAAAATTAAAATTTATTTTAA
16585471 AAAAT
1 AAAAT
16585476 GAAATTGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
AAAATATAAAAAAAATTAAAATTTATTTTAA
Found at i:16585531 original size:29 final size:29
Alignment explanation
Indices: 16585499--16585582 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
16585489 AATTAAAATT
16585499 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
16585528 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
16585550 AAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
16585579 AAAT
1 AAAT
16585583 TAAGAGGATT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
22 9 0.23
23 4 0.10
24 4 0.10
27 5 0.13
28 4 0.10
29 13 0.33
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:16585532 original size:51 final size:51
Alignment explanation
Indices: 16585476--16585590 Score: 194
Period size: 51 Copynumber: 2.3 Consensus size: 51
16585466 TTTAAAAAAT
*
16585476 GAAATTGAGGGGAAATTAAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTAAAATTAAATATGGATTTGAGAGAATTTTGGAAG
* *
16585527 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTAAAATTAAATATGGATTTGAGAGAATTTTGGAAG
*
16585578 GAAATTAAGAGGA
1 GAAATTGAGAGGA
16585591 TTAGAGAGGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.28
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTAAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:16585941 original size:29 final size:29
Alignment explanation
Indices: 16585874--16585941 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
16585864 GCGATTTCCC
*
16585874 AAAAAATGGCCCATTCCGGTAAATAATCA
1 AAAAAACGGCCCATTCCGGTAAATAATCA
* * ** *
16585903 AAAAATCGGCCCATTTCGGTAAATTTTGA
1 AAAAAACGGCCCATTCCGGTAAATAATCA
16585932 AAAAAACGGC
1 AAAAAACGGC
16585942 TTTTTTTGGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (29 bp):
AAAAAACGGCCCATTCCGGTAAATAATCA
Found at i:16586167 original size:20 final size:19
Alignment explanation
Indices: 16586130--16586167 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
16586120 TTTTGCGTTA
*
16586130 TTAAATTTGAATATAATTT
1 TTAAATTTGAATACAATTT
16586149 TTAAATTTGAAATACAATT
1 TTAAATTTG-AATACAATT
16586168 ATCCTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAAATTTGAATACAATTT
Found at i:16587528 original size:191 final size:191
Alignment explanation
Indices: 16587204--16587585 Score: 633
Period size: 191 Copynumber: 2.0 Consensus size: 191
16587194 AATACATTCA
*
16587204 ATTCATGATAAACAACTAGATCTGAGTTTAATTGAGCTTACCAAGGCTCTTATATTAACCCGAGC
1 ATTCATGATAAACAACTAGATCTAAGTTTAATTGAGCTTACCAAGGCTCTTATATTAACCCGAGC
* *
16587269 ACGAAATATGACCAAATTGTAAAGTTTTACAAATGTATGGTTTGACGTCGTGACTTCATCTAGTG
66 ACGAAATAGGACCAAATTGTAAAGTTTTACAAATGTATGGTTTGACGTCGTGACTTCACCTAGTG
* ** *
16587334 CTTGTCATGACATGGCAATTACAGTATGTCACGTTGCAACGACACGACAAGTTTTAGCTCG
131 CTTGTCACGACATGGCAATTACAGTATGTCACGTCACAACGACACGACAAGTCTTAGCTCG
* *
16587395 ATTCATGATAAACAA-TCA-ATCTAAGTCTTAATTGAGCTTACCAATGCTTTTATATTAACCCGA
1 ATTCATGATAAACAACT-AGATCTAAGT-TTAATTGAGCTTACCAAGGCTCTTATATTAACCCGA
16587458 GCACGAAATAGGACCAAATTGTAAAGTTTTACAAATGTATGGTTTGACGTCGTGACTTCACCTAG
64 GCACGAAATAGGACCAAATTGTAAAGTTTTACAAATGTATGGTTTGACGTCGTGACTTCACCTAG
* *
16587523 TGCTTGTCACGACATGGCAATTACATTATGTCACGTCACAACGAGACGACAAGTCTTAGCTCG
129 TGCTTGTCACGACATGGCAATTACAGTATGTCACGTCACAACGACACGACAAGTCTTAGCTCG
16587586 TCACGACGTC
Statistics
Matches: 178, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
190 8 0.04
191 170 0.96
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (191 bp):
ATTCATGATAAACAACTAGATCTAAGTTTAATTGAGCTTACCAAGGCTCTTATATTAACCCGAGC
ACGAAATAGGACCAAATTGTAAAGTTTTACAAATGTATGGTTTGACGTCGTGACTTCACCTAGTG
CTTGTCACGACATGGCAATTACAGTATGTCACGTCACAACGACACGACAAGTCTTAGCTCG
Found at i:16588973 original size:71 final size:71
Alignment explanation
Indices: 16588864--16589005 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 71
16588854 CATATTGGGA
16588864 GAATGAATATTATCCCAAAGAGACTAAGCATACCCTATGAGAGTAACTCATTTATAACAAGGTCA
1 GAATGAATATTATCCCAAAGAGACTAAGCATACCCTATGAGAGTAACTCATTTATAACAAGGTCA
16588929 TTGGAC
66 TTGGAC
* * *
16588935 GAATGAATATTATCCCAAAGAGATTAAGCATATCCTATGAGAGTCACTCATTTATAACAAGGTCA
1 GAATGAATATTATCCCAAAGAGACTAAGCATACCCTATGAGAGTAACTCATTTATAACAAGGTCA
16589000 TTGGAC
66 TTGGAC
16589006 TAGCACTAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.27
Consensus pattern (71 bp):
GAATGAATATTATCCCAAAGAGACTAAGCATACCCTATGAGAGTAACTCATTTATAACAAGGTCA
TTGGAC
Found at i:16589313 original size:58 final size:57
Alignment explanation
Indices: 16589245--16589363 Score: 150
Period size: 57 Copynumber: 2.1 Consensus size: 57
16589235 AGAATTGGTG
** * *
16589245 AAATGGAGAAATAGGAAA-CATTTGAAAATGGTTAAGGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAAT--GAAATCATTTGAAAATGAATAAGGTTTTCTCCAAAATAAAAATAA
* **
16589303 AAATGGAGAAATGAAATCATTTGCAAATGAATGTGGTTTTCTCCAAAATAAAAATAA
1 AAATGGAGAAATGAAATCATTTGAAAATGAATAAGGTTTTCTCCAAAATAAAAATAA
16589360 AAAT
1 AAAT
16589364 AAAAAATGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 4 0.08
57 37 0.70
58 12 0.23
ACGTcount: A:0.48, C:0.08, G:0.18, T:0.27
Consensus pattern (57 bp):
AAATGGAGAAATGAAATCATTTGAAAATGAATAAGGTTTTCTCCAAAATAAAAATAA
Found at i:16592228 original size:12 final size:12
Alignment explanation
Indices: 16592196--16592241 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
16592186 TTTAAATTTA
*
16592196 TTATTAATTATT
1 TTATTAATAATT
*
16592208 GTATT--TAATT
1 TTATTAATAATT
16592218 TTATTAATAATT
1 TTATTAATAATT
*
16592230 TTATTATTAATT
1 TTATTAATAATT
16592242 AAAATGTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 8 0.29
12 20 0.71
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (12 bp):
TTATTAATAATT
Found at i:16594301 original size:16 final size:17
Alignment explanation
Indices: 16594282--16594322 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
16594272 AAAATAGTAT
16594282 TATAATAAATTTAAA-A
1 TATAATAAATTTAAACA
*
16594298 TATACTAAATTTAAACA
1 TATAATAAATTTAAACA
*
16594315 TAAAATAA
1 TATAATAA
16594323 TGCTAGATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (17 bp):
TATAATAAATTTAAACA
Found at i:16596123 original size:30 final size:30
Alignment explanation
Indices: 16596089--16596151 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
16596079 ATTTAACAAG
16596089 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
* *
16596119 CAAATGTCTTTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
16596149 CAA
1 CAA
16596152 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAATAAAATTAA
Found at i:16600628 original size:2 final size:2
Alignment explanation
Indices: 16600621--16600656 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
16600611 GTATAGATAC
*
16600621 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16600657 CTCAAATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:16606314 original size:44 final size:44
Alignment explanation
Indices: 16606264--16606354 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
16606254 GTAGGTCAAA
*
16606264 TAATATTAAAATAACCTACACTAAT-AAGAGTTTAAGTGGGAAAC
1 TAATATTAAAATAACCTACACTAATCAA-AGTTTAAGTGAGAAAC
*
16606308 TAATATTAAAATAATCTACACTAATCAAAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGAGAAAC
16606352 TAA
1 TAA
16606355 GAACATAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGTTTAAGTGAGAAAC
Found at i:16615976 original size:154 final size:154
Alignment explanation
Indices: 16615696--16615979 Score: 399
Period size: 154 Copynumber: 1.8 Consensus size: 154
16615686 CCCTCCTTTC
* *
16615696 TCAACTGCGCAACCATACCCTTTGAAGGTGGTGGCTTGGATTAGGCTTCCTGGATTGCTTACAGA
1 TCAACTGCGCAACCATACCCTTTGAAGGTGGTGGCTTGGATTAGGCTTCCTAGATTGCCTACAGA
* * * **
16615761 AATGTATAAGCGTAGTATCCTGCATGCAATTGGCGAAATGATGGGAAAAATAATCAAGGTGGACT
66 AATGCATAAGCATAGTATCCTGCATGCAATTGGCGAAACGAAAGGAAAAATAATCAAGGTGGACT
16615826 ACATGTCTGAAAATGGTTTGAAAG
131 ACATGTCTGAAAATGGTTTGAAAG
* * **
16615850 TCAACTGTGCAGCCATACCCTTTGAAGGTGGTGGCTTGGATTAGGCTTCCTAGATTGCCTAGTGA
1 TCAACTGCGCAACCATACCCTTTGAAGGTGGTGGCTTGGATTAGGCTTCCTAGATTGCCTACAGA
* ** * * *
16615915 AATGCATAAGCATGGTATTTTGCATGCAATTGGTGAAACGACAATG-AAAGTAATCAAGGTGGAC
66 AATGCATAAGCATAGTATCCTGCATGCAATTGGCGAAACGA-AAGGAAAAATAATCAAGGTGGAC
16615979 T
130 T
16615980 CGAAGACTGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
154 111 0.99
155 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (154 bp):
TCAACTGCGCAACCATACCCTTTGAAGGTGGTGGCTTGGATTAGGCTTCCTAGATTGCCTACAGA
AATGCATAAGCATAGTATCCTGCATGCAATTGGCGAAACGAAAGGAAAAATAATCAAGGTGGACT
ACATGTCTGAAAATGGTTTGAAAG
Found at i:16620585 original size:37 final size:37
Alignment explanation
Indices: 16620504--16620586 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 37
16620494 ACAATACATA
* *
16620504 AACAGTAGTCATGCTTAAAATGTATTTAGTCCAACAG
1 AACAGTAGACATGCTTAAAATGTATTCAGTCCAACAG
* * *
16620541 AGGCAGTAGACATGCTTAATATGTATTCA-TTCAACAG
1 A-ACAGTAGACATGCTTAAAATGTATTCAGTCCAACAG
16620578 TAACAGTAG
1 -AACAGTAG
16620587 GCATACTGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
37 14 0.37
38 24 0.63
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (37 bp):
AACAGTAGACATGCTTAAAATGTATTCAGTCCAACAG
Found at i:16622062 original size:15 final size:15
Alignment explanation
Indices: 16622042--16622070 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16622032 TTTTTTAGAC
16622042 TCTCACAACATTTAT
1 TCTCACAACATTTAT
16622057 TCTCACAACATTTA
1 TCTCACAACATTTA
16622071 ATTTCAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (15 bp):
TCTCACAACATTTAT
Found at i:16624962 original size:26 final size:26
Alignment explanation
Indices: 16624931--16624985 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16624921 CTTTCATTTT
* *
16624931 CATGTTGAACATCTCTCTGCCTTCAA
1 CATGTTGAACACCTCTCTACCTTCAA
*
16624957 CATGTTGAACACCTTTCTACCTTCAA
1 CATGTTGAACACCTCTCTACCTTCAA
16624983 CAT
1 CAT
16624986 CTCTAATCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (26 bp):
CATGTTGAACACCTCTCTACCTTCAA
Found at i:16633261 original size:24 final size:24
Alignment explanation
Indices: 16633229--16633277 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
16633219 AATTTTCATA
16633229 ATATTACTATTTGACGCTAATCTT
1 ATATTACTATTTGACGCTAATCTT
16633253 ATATTACTATTTGACGCTAATCTT
1 ATATTACTATTTGACGCTAATCTT
16633277 A
1 A
16633278 CGTTCGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (24 bp):
ATATTACTATTTGACGCTAATCTT
Found at i:16634220 original size:21 final size:22
Alignment explanation
Indices: 16634173--16634232 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
16634163 TTTTACTACT
* **
16634173 AGTGGGTCATCCACAATAATGA
1 AGTGGTTCATCCACAACGATGA
16634195 A-TGGTTCATCCACAACGAT-A
1 AGTGGTTCATCCACAACGATGA
* *
16634215 AGTGGTTAATCCATAACG
1 AGTGGTTCATCCACAACG
16634233 CGGTGTAAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (22 bp):
AGTGGTTCATCCACAACGATGA
Found at i:16635678 original size:28 final size:31
Alignment explanation
Indices: 16635624--16635684 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 31
16635614 CTTATTATAT
16635624 AATAACTTAAATATTTAAAATTATCAAATTA
1 AATAACTTAAATATTTAAAATTATCAAATTA
**
16635655 AATAA-TTAAAT-TTTAGGATT-TCAAATTA
1 AATAACTTAAATATTTAAAATTATCAAATTA
16635683 AA
1 AA
16635685 CTACATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 10 0.36
29 7 0.25
30 6 0.21
31 5 0.18
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (31 bp):
AATAACTTAAATATTTAAAATTATCAAATTA
Found at i:16638010 original size:15 final size:15
Alignment explanation
Indices: 16637990--16638022 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16637980 TATTCTATGG
*
16637990 ATAAATAATATTTAC
1 ATAAATAATAATTAC
16638005 ATAAATAATAATTAC
1 ATAAATAATAATTAC
16638020 ATA
1 ATA
16638023 GGACACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (15 bp):
ATAAATAATAATTAC
Found at i:16642658 original size:15 final size:15
Alignment explanation
Indices: 16642638--16642681 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
16642628 TAGGTTTTAA
16642638 TGTGTGACACATGGG
1 TGTGTGACACATGGG
*
16642653 TGTGTGACACGA-GCG
1 TGTGTGACAC-ATGGG
*
16642668 TGTGTGACAAATGG
1 TGTGTGACACATGG
16642682 ACATGTGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.23, C:0.14, G:0.39, T:0.25
Consensus pattern (15 bp):
TGTGTGACACATGGG
Found at i:16643816 original size:2 final size:2
Alignment explanation
Indices: 16643809--16643839 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
16643799 TCAAACATAA
16643809 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
16643840 TATATATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:16644433 original size:37 final size:39
Alignment explanation
Indices: 16644337--16644435 Score: 112
Period size: 40 Copynumber: 2.6 Consensus size: 39
16644327 AACACACCAG
* **
16644337 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTACTAA
1 TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGTAC-AA
** * *
16644377 TTTTACACCTAGTGTCTCATCGGCTAAACCGAAGTA-AA
1 TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGTACAA
16644415 -TTGGCACCTAGTGCCTCATCG
1 TTTGGCACCTAGTGCCTCATCG
16644436 AATATATCCA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 18 0.37
38 2 0.04
40 29 0.59
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (39 bp):
TTTGGCACCTAGTGCCTCATCGGATAAACCGAAGTACAA
Found at i:16645420 original size:22 final size:22
Alignment explanation
Indices: 16645390--16645459 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 22
16645380 CTTTTTGTTT
16645390 TTTAATTTATT-TCATTTACTTA
1 TTTAATTTATTAT-ATTTACTTA
*
16645412 TTTATTTTATTATATTTACTTTA
1 TTTAATTTATTATATTTAC-TTA
*
16645435 TTATTATATTATATATATTTACTTA
1 TT-TAAT-TTAT-TATATTTACTTA
16645460 AATATTAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 16 0.40
23 6 0.15
24 2 0.05
25 7 0.17
26 9 0.22
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTAATTTATTATATTTACTTA
Found at i:16645429 original size:14 final size:14
Alignment explanation
Indices: 16645410--16645455 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
16645400 TTCATTTACT
16645410 TATTTATTTTATTA
1 TATTTATTTTATTA
*
16645424 TATTTACTTTATTA
1 TATTTATTTTATTA
* *
16645438 T-TATATTATA-TA
1 TATTTATTTTATTA
16645450 TATTTA
1 TATTTA
16645456 CTTAAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
12 3 0.12
13 9 0.35
14 14 0.54
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTTATTTTATTA
Found at i:16645451 original size:26 final size:27
Alignment explanation
Indices: 16645404--16645458 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
16645394 ATTTATTTCA
*
16645404 TTTACTTATTTATTTTATTATATTTAC
1 TTTACTTATTTATTATATTATATTTAC
16645431 TTTA-TTATTATATTATA-TATATTTAC
1 TTTACTTATT-TATTATATTATATTTAC
16645457 TT
1 TT
16645459 AAATATTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTACTTATTTATTATATTATATTTAC
Found at i:16645465 original size:26 final size:25
Alignment explanation
Indices: 16645413--16645466 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
16645403 ATTTACTTAT
* * *
16645413 TTATTTTATTATATTTACTTTATTA
1 TTATATTATTATATTTACTTAAATA
16645438 TTATATTATATATATTTACTTAAATA
1 TTATATTAT-TATATTTACTTAAATA
16645464 TTA
1 TTA
16645467 AGTAATACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATATTATTATATTTACTTAAATA
Found at i:16645478 original size:26 final size:26
Alignment explanation
Indices: 16645423--16645480 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16645413 TTATTTTATT
* * * *
16645423 ATATTTACTTTATTATTATATTATAT
1 ATATTTACTTAAATATTATATAATAC
16645449 ATATTTACTTAAATATTA-AGTAATAC
1 ATATTTACTTAAATATTATA-TAATAC
16645475 ATATTT
1 ATATTT
16645481 TATTAATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATTTACTTAAATATTATATAATAC
Found at i:16650579 original size:131 final size:131
Alignment explanation
Indices: 16650345--16650607 Score: 474
Period size: 131 Copynumber: 2.0 Consensus size: 131
16650335 AGGCACTTTT
*
16650345 CAATCAGCTGAAGTTGGAGAGATGGTTATAATTTGTAGTAGGTTTTAAGCTGAAAAATGAGGTCT
1 CAATCAGCTGAAGTTGGAGAGATGGTTATAATTTGTAGTAGGTTTTAAGCTGAAAAATGAGGTCA
* *
16650410 GGACTGTCAGGTAAAGCTTTAGGCTGAAAAGTTTGGGCATTGA-GATGGACCATAGAAGTGTTTT
66 GGACCGTCAGGTAAAGCTTTAGGCTGAAAAGTTTGGGCA-TCATGATGGACCATAGAAGTGTTTT
16650474 GG
130 GG
16650476 CAATCAGCTGAAGTTGGAGAGATGGTTATAATTTGTAGTAGGTTTTAAGCTGAAAAATGAGGTCA
1 CAATCAGCTGAAGTTGGAGAGATGGTTATAATTTGTAGTAGGTTTTAAGCTGAAAAATGAGGTCA
*
16650541 GGACCGTCAGGTAAAGCTTTAGGTTGAAAAGTTTGGGCATCATGATGGACCATAGAAGTGTTTTG
66 GGACCGTCAGGTAAAGCTTTAGGCTGAAAAGTTTGGGCATCATGATGGACCATAGAAGTGTTTTG
16650606 G
131 G
16650607 C
1 C
16650608 CTCATACATA
Statistics
Matches: 127, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
130 2 0.02
131 125 0.98
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (131 bp):
CAATCAGCTGAAGTTGGAGAGATGGTTATAATTTGTAGTAGGTTTTAAGCTGAAAAATGAGGTCA
GGACCGTCAGGTAAAGCTTTAGGCTGAAAAGTTTGGGCATCATGATGGACCATAGAAGTGTTTTG
G
Found at i:16654256 original size:16 final size:16
Alignment explanation
Indices: 16654215--16654256 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
16654205 GGCTGTTCTT
*
16654215 ATAGATTGAATGTTAT
1 ATAGATTGAATGTTAC
*
16654231 AGAGATTGAATGTTAC
1 ATAGATTGAATGTTAC
*
16654247 ATAGAATGAA
1 ATAGATTGAA
16654257 AATAAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.33
Consensus pattern (16 bp):
ATAGATTGAATGTTAC
Found at i:16676613 original size:18 final size:18
Alignment explanation
Indices: 16676582--16676624 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
16676572 GGGGTGTTAC
16676582 AATA-ATATT-TTTTTAT
1 AATATATATTATTTTTAT
16676598 GAATATATATTATTTTTAT
1 -AATATATATTATTTTTAT
16676617 AATATATA
1 AATATATA
16676625 ATATGGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 13 0.54
19 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
AATATATATTATTTTTAT
Found at i:16676628 original size:21 final size:19
Alignment explanation
Indices: 16676583--16676628 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
16676573 GGGTGTTACA
*
16676583 ATAATATTTTTTTATGAAT
1 ATAATATTTTTTTATAAAT
16676602 AT-ATATTATTTTTATAATAT
1 ATAATATT-TTTTTATAA-AT
16676622 ATAATAT
1 ATAATAT
16676629 GGACACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 10 0.43
20 4 0.17
21 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
ATAATATTTTTTTATAAAT
Found at i:16678929 original size:14 final size:14
Alignment explanation
Indices: 16678910--16678942 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
16678900 TCATCCCTCA
16678910 CTACTCCCTACTTC
1 CTACTCCCTACTTC
16678924 CTACTCCCTACTTC
1 CTACTCCCTACTTC
*
16678938 TTACT
1 CTACT
16678943 AGACCTGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.45, G:0.00, T:0.39
Consensus pattern (14 bp):
CTACTCCCTACTTC
Found at i:16679900 original size:13 final size:13
Alignment explanation
Indices: 16679882--16679908 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16679872 TTTAAACATA
16679882 AAAAACTTAAACT
1 AAAAACTTAAACT
16679895 AAAAACTTAAACT
1 AAAAACTTAAACT
16679908 A
1 A
16679909 GTATATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAAACTTAAACT
Found at i:16679921 original size:43 final size:40
Alignment explanation
Indices: 16679842--16679928 Score: 122
Period size: 43 Copynumber: 2.1 Consensus size: 40
16679832 ACTAAAAAGT
16679842 AAAAACTTAAACATAAAAAAAAATATATATTTTAAACATA
1 AAAAACTTAAACATAAAAAAAAATATATATTTTAAACATA
*
16679882 AAAAACTTAAAC-TAAAAACTTAAACTAGTATATTTTAAACATA
1 AAAAACTTAAACATAAAAA---AAAATA-TATATTTTAAACATA
16679925 AAAA
1 AAAA
16679929 TATATATTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
39 6 0.14
40 12 0.29
42 5 0.12
43 19 0.45
ACGTcount: A:0.62, C:0.09, G:0.01, T:0.28
Consensus pattern (40 bp):
AAAAACTTAAACATAAAAAAAAATATATATTTTAAACATA
Found at i:16679934 original size:21 final size:22
Alignment explanation
Indices: 16679860--16679937 Score: 56
Period size: 21 Copynumber: 3.7 Consensus size: 22
16679850 AAACATAAAA
16679860 AAAAATA-TATATTTTAAACAT
1 AAAAATACTATATTTTAAACAT
*** *
16679881 AAAAA-ACT-TAAACTAAAAACT
1 AAAAATACTATATTTTAAACA-T
* * *
16679902 TAAACTAGTATATTTTAAACAT
1 AAAAATACTATATTTTAAACAT
16679924 AAAAATA-TATATTT
1 AAAAATACTATATTT
16679938 AATATATTTT
Statistics
Matches: 40, Mismatches: 13, Indels: 8
0.66 0.21 0.13
Matches are distributed among these distances:
20 8 0.20
21 17 0.43
22 8 0.20
23 7 0.17
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.35
Consensus pattern (22 bp):
AAAAATACTATATTTTAAACAT
Found at i:16680323 original size:31 final size:31
Alignment explanation
Indices: 16680288--16680347 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
16680278 GTAGTGGTGC
* *
16680288 CAAAGTGATAAGCAACACCACTTTGTCCACT
1 CAAAGTAATAAGCAACACCACTTAGTCCACT
* **
16680319 CAAAGTAATAGGCGGCACCACTTAGTCCA
1 CAAAGTAATAAGCAACACCACTTAGTCCA
16680348 TTCTGGTATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (31 bp):
CAAAGTAATAAGCAACACCACTTAGTCCACT
Found at i:16680456 original size:27 final size:27
Alignment explanation
Indices: 16680393--16680475 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 27
16680383 GTATCAGGGT
* *
16680393 ATGGTGCCTATCAGATAGGTGGCACCA
1 ATGGTGCCTATCTGATAGGCGGCACCA
* *** *
16680420 GTGACCCCTATCTGATAGGCGGCACTA
1 ATGGTGCCTATCTGATAGGCGGCACCA
*
16680447 ATGGTGCCTATCTGATAGGCAGCACCA
1 ATGGTGCCTATCTGATAGGCGGCACCA
16680474 AT
1 AT
16680476 AGCATTTCCC
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (27 bp):
ATGGTGCCTATCTGATAGGCGGCACCA
Found at i:16680581 original size:14 final size:14
Alignment explanation
Indices: 16680537--16680586 Score: 66
Period size: 14 Copynumber: 3.4 Consensus size: 14
16680527 AACAAATAGC
16680537 AGAACAAGAGAGAGAGA
1 AGAA-AAGAGA-AGA-A
16680554 AGAAAAGA-AAGAA
1 AGAAAAGAGAAGAA
16680567 AGAAAAGAGAAGAA
1 AGAAAAGAGAAGAA
16680581 AGAAAA
1 AGAAAA
16680587 TGTATTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.28
14 14 0.44
15 1 0.03
16 4 0.12
17 4 0.12
ACGTcount: A:0.70, C:0.02, G:0.28, T:0.00
Consensus pattern (14 bp):
AGAAAAGAGAAGAA
Found at i:16683749 original size:27 final size:26
Alignment explanation
Indices: 16683718--16683797 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 26
16683708 AACAAAATTT
16683718 ATATTACAAAGTTTGTTCCAATTTTTA
1 ATATTACAAAGTTTGTTCCAA-TTTTA
** * *
16683745 ATATTGTAATGTAT-TT--AA-TTT-
1 ATATTACAAAGTTTGTTCCAATTTTA
16683766 ATATTACAAAGTTTGTTCCAAGTTTTA
1 ATATTACAAAGTTTGTTCCAA-TTTTA
16683793 ATATT
1 ATATT
16683798 GTAATGTATT
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
21 10 0.26
22 5 0.13
24 4 0.10
26 5 0.13
27 15 0.38
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (26 bp):
ATATTACAAAGTTTGTTCCAATTTTA
Found at i:16683752 original size:62 final size:62
Alignment explanation
Indices: 16683651--16683775 Score: 214
Period size: 62 Copynumber: 2.0 Consensus size: 62
16683641 CAATGTGCCT
*
16683651 AATTTATATTACAAAGTTGGTTCCAATTTTTAATGTTGTAATATATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTGGTTCCAATTTTTAATATTGTAATATATTTAATTTATATAACAA
* * *
16683713 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTGGTTCCAATTTTTAATATTGTAATATATTTAATTTATATAACAA
16683775 A
1 A
16683776 GTTTGTTCCA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.48
Consensus pattern (62 bp):
AATTTATATTACAAAGTTGGTTCCAATTTTTAATATTGTAATATATTTAATTTATATAACAA
Found at i:16683764 original size:24 final size:24
Alignment explanation
Indices: 16683737--16683813 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 24
16683727 AGTTTGTTCC
16683737 AATTTTTAATATTGTAATGTATTT
1 AATTTTTAATATTGTAATGTATTT
** * *
16683761 AA--TTT-ATATTACAAAGTTTGTT
1 AATTTTTAATATTGTAATGTAT-TT
*
16683783 CCAAGTTTTAATATTGTAATGTATTT
1 --AATTTTTAATATTGTAATGTATTT
16683809 AATTT
1 AATTT
16683814 ATATTACATA
Statistics
Matches: 38, Mismatches: 9, Indels: 12
0.64 0.15 0.20
Matches are distributed among these distances:
21 10 0.26
22 5 0.13
24 8 0.21
26 5 0.13
27 10 0.26
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (24 bp):
AATTTTTAATATTGTAATGTATTT
Found at i:16683766 original size:48 final size:48
Alignment explanation
Indices: 16683713--16683821 Score: 209
Period size: 48 Copynumber: 2.3 Consensus size: 48
16683703 TATATAACAA
*
16683713 AATTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATTT
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
16683761 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
1 AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
16683809 AATTTATATTACA
1 AATTTATATTACA
16683822 TAATTTATAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.50
Consensus pattern (48 bp):
AATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTT
Found at i:16683827 original size:14 final size:14
Alignment explanation
Indices: 16683808--16683835 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
16683798 GTAATGTATT
16683808 TAATTTATATTACA
1 TAATTTATATTACA
16683822 TAATTTATATTACA
1 TAATTTATATTACA
16683836 AAGTTTGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTTATATTACA
Found at i:16683835 original size:110 final size:109
Alignment explanation
Indices: 16683650--16683874 Score: 351
Period size: 110 Copynumber: 2.1 Consensus size: 109
16683640 CCAATGTGCC
* *
16683650 TAATTTATATTACAAAGTTGGTTCCAATTTTTAATGTTGTAATATATTTAATTTATATAACAAAA
1 TAATTTATATTACAAAGTTGGTTCCAAGTTTTAATATTGTAATATATTTAATTTATATAACAAAA
* *
16683715 TTTATATTACAAAGTTTGTTCCAATTTTTAATATTGTAATGTATT
66 TTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGT-TG
* * * *
16683760 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATTTAATTTATATTACATAA
1 TAATTTATATTACAAAGTTGGTTCCAAGTTTTAATATTGTAATATATTTAATTTATATAACAAAA
* *
16683825 TTTATATTACAAAGTTTGTTCCAAGTTTTAGTGTTGTAATGTTG
66 TTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTTG
16683869 TAATTT
1 TAATTT
16683875 TAATGCACTA
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
109 7 0.07
110 98 0.93
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (109 bp):
TAATTTATATTACAAAGTTGGTTCCAAGTTTTAATATTGTAATATATTTAATTTATATAACAAAA
TTTATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTTG
Found at i:16685876 original size:16 final size:16
Alignment explanation
Indices: 16685812--16685884 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
16685802 AATAACATGC
16685812 CAAATAAATTACATAA
1 CAAATAAATTACATAA
*
16685828 AAAATAAATTTA-ATCAA
1 CAAATAAA-TTACAT-AA
* *
16685845 CCTAAA-ACA-CACATAA
1 -C-AAATAAATTACATAA
16685861 CAAATAAATTACATAA
1 CAAATAAATTACATAA
*
16685877 AAAATAAA
1 CAAATAAA
16685885 ACATTCTTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
14 3 0.07
15 3 0.07
16 25 0.58
17 7 0.16
18 2 0.05
19 3 0.07
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22
Consensus pattern (16 bp):
CAAATAAATTACATAA
Found at i:16686433 original size:30 final size:31
Alignment explanation
Indices: 16686399--16686482 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
16686389 ATGGAGATGA
* *
16686399 CGTGACCAGT-GGTGCCGCCTCTGCCAAAGG
1 CGTGACCAGTAGGTGTCGCCTCTGCCAAAGC
* * *
16686429 CGTGACCAGTGGGTGTCGCCTATGCCCAAGC
1 CGTGACCAGTAGGTGTCGCCTCTGCCAAAGC
* *
16686460 CGTAACCATTAGGTGTCGCCTCT
1 CGTGACCAGTAGGTGTCGCCTCT
16686483 TCGCTAGGCG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 10 0.22
31 35 0.78
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (31 bp):
CGTGACCAGTAGGTGTCGCCTCTGCCAAAGC
Found at i:16689196 original size:9 final size:9
Alignment explanation
Indices: 16689184--16689260 Score: 84
Period size: 9 Copynumber: 8.4 Consensus size: 9
16689174 AAAATAAAAA
16689184 AATTCGGGT
1 AATTCGGGT
16689193 AATTCGGGT
1 AATTCGGGT
*
16689202 ATTTTTC-GGT
1 A--ATTCGGGT
*
16689212 AATTCGGTT
1 AATTCGGGT
* *
16689221 AATTTGGTT
1 AATTCGGGT
*
16689230 AATTCGGTT
1 AATTCGGGT
16689239 AATTCGGGT
1 AATTCGGGT
16689248 AATTCGGGT
1 AATTCGGGT
16689257 AATT
1 AATT
16689261 TTTAACCAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
8 3 0.05
9 49 0.83
10 4 0.07
11 3 0.05
ACGTcount: A:0.22, C:0.09, G:0.26, T:0.43
Consensus pattern (9 bp):
AATTCGGGT
Found at i:16689932 original size:15 final size:15
Alignment explanation
Indices: 16689912--16689963 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
16689902 ACTACAAAAC
16689912 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
16689927 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
16689946 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
16689961 ATT
1 ATT
16689964 ATTTTTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:16695813 original size:11 final size:11
Alignment explanation
Indices: 16695799--16695829 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
16695789 AACAAGCTGA
16695799 CAACATGTTGT
1 CAACATGTTGT
16695810 CAACATGTTGT
1 CAACATGTTGT
*
16695821 CAACGTGTT
1 CAACATGTT
16695830 AACTGCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (11 bp):
CAACATGTTGT
Found at i:16696945 original size:25 final size:27
Alignment explanation
Indices: 16696917--16696971 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
16696907 CATTTTAATT
16696917 ATGTGTTAAT-TTC-AAGACTTATGTA
1 ATGTGTTAATATTCAAAGACTTATGTA
*
16696942 A--TGTTAGTGATTCAAAGACTTATGTA
1 ATGTGTTAAT-ATTCAAAGACTTATGTA
16696968 ATGT
1 ATGT
16696972 TTTTAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
23 6 0.25
25 4 0.17
26 13 0.54
28 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (27 bp):
ATGTGTTAATATTCAAAGACTTATGTA
Found at i:16701837 original size:102 final size:102
Alignment explanation
Indices: 16701704--16701965 Score: 389
Period size: 102 Copynumber: 2.5 Consensus size: 102
16701694 ATTGAATATA
* *
16701704 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCAGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCTCAAGGGGTTGCTAAGTGCTGATTCCCAGAATCATTGGT
* *
16701769 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* * *
16701806 AAGGGGGTTGCTAAGTGTTGATTCCCTCAAGGGGTTGCTAAGTGATGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCTCAAGGGGTTGCTAAGTGCTGATTCCCAGAATCATTGGT
16701871 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* *
16701908 AAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATT-CCC---TCA-AGG-GGTTGCTAAGTGCTGATTCC
16701966 ACCGTATTTT
Statistics
Matches: 143, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
102 116 0.81
103 3 0.02
106 3 0.02
107 2 0.01
108 19 0.13
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.32
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCTCAAGGGGTTGCTAAGTGCTGATTCCCAGAATCATTGGT
GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
Found at i:16701957 original size:75 final size:76
Alignment explanation
Indices: 16701834--16702046 Score: 331
Period size: 75 Copynumber: 2.8 Consensus size: 76
16701824 TGATTCCCTC
*
16701834 AAGGGGTTGCTAAGTGATGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTA-T
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAT-CCACCGTATT
16701898 CTTAAATGTG-A
65 CTTAAATGTGAA
*
16701909 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGA-TCCACCGTATT
* *
16701974 TTTGAATGTGAA
65 CTTAAATGTGAA
* *
16701986 AAGAGGTTGCTAAGTGCTGATTTCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTG-ATCCACCG
16702047 ATAACGGATA
Statistics
Matches: 127, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
75 59 0.46
76 10 0.08
77 57 0.45
78 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCACCGTATTC
TTAAATGTGAA
Found at i:16702025 original size:77 final size:75
Alignment explanation
Indices: 16701838--16702046 Score: 328
Period size: 77 Copynumber: 2.8 Consensus size: 75
16701828 TCCCTCAAGG
* *
16701838 GGTTGCTAAGTGATGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAA
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTAA
*
16701903 ATGTGAAAGG
66 ATGTGAAAGA
* * *
16701913 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTTG
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-TCTTA
16701978 AATGTGAAAAGA
65 AATGTG-AAAGA
* *
16701990 GGTTGCTAAGTGCTGATTTCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
16702047 ATAACGGATA
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
75 56 0.46
76 9 0.07
77 58 0.47
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (75 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTAA
ATGTGAAAGA
Found at i:16713494 original size:29 final size:31
Alignment explanation
Indices: 16713451--16713518 Score: 97
Period size: 29 Copynumber: 2.3 Consensus size: 31
16713441 TTTAAAAAAA
16713451 TTAAAAATATATTTTTATAA-TTTT-AATTT
1 TTAAAAATATATTTTTATAATTTTTGAATTT
16713480 TTAAAAATAGT-TTTTTATAATTTTTGAATTT
1 TTAAAAATA-TATTTTTATAATTTTTGAATTT
*
16713511 TTTAAAAT
1 TTAAAAAT
16713519 TAAAAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
29 18 0.51
30 5 0.14
31 12 0.34
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (31 bp):
TTAAAAATATATTTTTATAATTTTTGAATTT
Found at i:16713990 original size:18 final size:18
Alignment explanation
Indices: 16713967--16714002 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16713957 ATGGTTTAAT
*
16713967 GTATATGTTGATGTTTTG
1 GTATATGTTGATGGTTTG
*
16713985 GTATATTTTGATGGTTTG
1 GTATATGTTGATGGTTTG
16714003 AACTATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.56
Consensus pattern (18 bp):
GTATATGTTGATGGTTTG
Found at i:16722625 original size:41 final size:41
Alignment explanation
Indices: 16722340--16722619 Score: 381
Period size: 41 Copynumber: 6.8 Consensus size: 41
16722330 TTAAACAGAT
** * * *
16722340 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCT-AATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
16722382 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
16722422 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
16722463 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
16722504 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
16722545 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
16722584 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
16722620 TATTACATTC
Statistics
Matches: 222, Mismatches: 10, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 2 0.01
40 8 0.04
41 207 0.93
42 5 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:16730249 original size:41 final size:41
Alignment explanation
Indices: 16730005--16730243 Score: 292
Period size: 41 Copynumber: 5.8 Consensus size: 41
16729995 TTAAACAGAT
* * * *
16730005 TCACCGGCAATT-TGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGC-ATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
16730047 -CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
16730087 TCACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
16730128 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
16730169 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
16730208 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
16730244 TATTACATTC
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 2 0.01
40 9 0.05
41 168 0.93
42 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:16732271 original size:21 final size:21
Alignment explanation
Indices: 16732229--16732271 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
16732219 TATAATTCCT
*
16732229 CCATGTTTGGAAGGAATAGGC
1 CCATGTTTGGAAGGAAGAGGC
*
16732250 CCATGTTT-GATGGAAGATGGC
1 CCATGTTTGGAAGGAAGA-GGC
16732271 C
1 C
16732272 AGAGAGCTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (21 bp):
CCATGTTTGGAAGGAAGAGGC
Found at i:16732951 original size:14 final size:15
Alignment explanation
Indices: 16732932--16732987 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
16732922 AATCTTCAAT
16732932 GATATG-CAATCTTA
1 GATATGACAATCTTA
16732946 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
16732963 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
16732981 GATATGA
1 GATATGA
16732988 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:16732958 original size:17 final size:17
Alignment explanation
Indices: 16732938--16733001 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
16732928 CAATGATATG
16732938 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
16732955 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
16732973 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
16732992 CAATCTTAGA
1 CAATCTTAGA
16733002 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:16732976 original size:35 final size:37
Alignment explanation
Indices: 16732930--16733008 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
16732920 ATAATCTTCA
16732930 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
16732966 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
16733002 A-GATATG
1 ATGATATG
16733009 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:16733528 original size:15 final size:16
Alignment explanation
Indices: 16733485--16733543 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
16733475 CAATATATTT
*
16733485 TATATATTTTATATAA
1 TATATTTTTTATATAA
16733501 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
16733517 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
16733535 TTATATTTT
1 -TATATTTT
16733544 AAATTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 6 0.17
16 10 0.29
17 10 0.29
18 1 0.03
19 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:16733547 original size:30 final size:29
Alignment explanation
Indices: 16733478--16733552 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
16733468 TCTAAACCAA
16733478 TATATTTT--ATATATTTTATATAATTAT
1 TATATTTTAAATATATTTTATATAATTAT
* *
16733505 TAT-TCTTATAAATATATTTTTTATTATATAT
1 TATAT-TT-TAAATATATTTTATATAAT-TAT
*
16733536 TATATTTTAAATTTATT
1 TATATTTTAAATATATT
16733553 ATTAAATATC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 1 0.03
30 23 0.59
31 8 0.21
32 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (29 bp):
TATATTTTAAATATATTTTATATAATTAT
Found at i:16733568 original size:26 final size:26
Alignment explanation
Indices: 16733520--16733569 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16733510 TTATAAATAT
* * * *
16733520 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
16733546 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
16733570 TTATATGCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:16747613 original size:31 final size:30
Alignment explanation
Indices: 16747557--16747615 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
16747547 TCAAGTTTCC
*
16747557 ATATACATGTAACATTCATATCATGTATCT
1 ATATACATGTAACAATCATATCATGTATCT
*
16747587 ATATATCATGTAA-AATCATTTCCATGTAT
1 ATATA-CATGTAACAATCATAT-CATGTAT
16747616 TTCATGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (30 bp):
ATATACATGTAACAATCATATCATGTATCT
Found at i:16747827 original size:25 final size:25
Alignment explanation
Indices: 16747772--16747839 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
16747762 GTATGCTTAT
* *
16747772 ATGAGCTGTGAATCGGTATGCCTTC
1 ATGAGCTATAAATCGGTATGCCTTC
* *
16747797 ACGAGCTATAAATCGGTATG-ATCTC
1 ATGAGCTATAAATCGGTATGCCT-TC
*
16747822 ATGAGCTATAAACCGGTA
1 ATGAGCTATAAATCGGTA
16747840 AGCTCATACG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (25 bp):
ATGAGCTATAAATCGGTATGCCTTC
Found at i:16751366 original size:82 final size:81
Alignment explanation
Indices: 16751260--16751514 Score: 349
Period size: 82 Copynumber: 3.2 Consensus size: 81
16751250 CGATAGGATG
* * *
16751260 AAATCCCAAAATAAAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCAAATAAAATT
1 AAATCCCAAAATAGAATTATTTAATTAAATCTTATTTGGAAA-AAAATCAAAATCAAATAAAATC
16751325 TGTTAAACGGCGAGAAT
65 TGTTAAACGGCGAGAAT
16751342 AAATCCCAAAATAGAATTATTTAATTAAATCTTATTTGG----AAA-CAAAATCAAATAAAATCT
1 AAATCCCAAAATAGAATTATTTAATTAAATCTTATTTGGAAAAAAATCAAAATCAAATAAAATCT
*
16751402 GTTAAACGACGAGAAT
66 GTTAAACGGCGAGAAT
* * * * * **
16751418 AAATCCCGAAATAGAATTATTCAAATAATTCTCATTTGGAAATAAAATCAAAATGGAATAAAATC
1 AAATCCCAAAATAGAATTATTTAATTAAATCTTATTTGGAAA-AAAATCAAAATCAAATAAAATC
*
16751483 TATTAAACGGCGAGAAT
65 TGTTAAACGGCGAGAAT
16751500 AAATCCCAAAATAGA
1 AAATCCCAAAATAGA
16751515 TTTTATTCAA
Statistics
Matches: 153, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
76 66 0.43
77 3 0.02
81 3 0.02
82 81 0.53
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.27
Consensus pattern (81 bp):
AAATCCCAAAATAGAATTATTTAATTAAATCTTATTTGGAAAAAAATCAAAATCAAATAAAATCT
GTTAAACGGCGAGAAT
Found at i:16751422 original size:158 final size:159
Alignment explanation
Indices: 16751216--16751514 Score: 413
Period size: 158 Copynumber: 1.9 Consensus size: 159
16751206 CAGAATTAAA
* * * * * *
16751216 ATTTTGAAACAAAATCAAAATCAATTCTGTTGAACGATAGGATGAAATCCCAAAATAAAATTATT
1 ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGAGAGAATGAAATCCCAAAATAAAATTATT
* * ** * *
16751281 TAATTAAATCTTGTTTGGAAACAAAATCAAAATCAAATAAAATTTGTTAAACGGCGAGAATAAAT
66 CAAATAAATCTCATTTGGAAACAAAATCAAAATCAAATAAAATCTATTAAACGGCGAGAATAAAT
16751346 CCCAAAATAGAATTATTTAATTAAATCTT
131 CCCAAAATAGAATTATTTAATTAAATCTT
* *
16751375 ATTTGGAAACAAAATC-AAATAAAATCTGTTAAACGACGAGAAT-AAATCCCGAAATAGAATTAT
1 ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGA-GAGAATGAAATCCCAAAATAAAATTAT
* * **
16751438 TCAAATAATTCTCATTTGGAAATAAAATCAAAATGGAATAAAATCTATTAAACGGCGAGAATAAA
65 TCAAATAAATCTCATTTGGAAACAAAATCAAAATCAAATAAAATCTATTAAACGGCGAGAATAAA
16751503 TCCCAAAATAGA
130 TCCCAAAATAGA
16751515 TTTTATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 102 0.84
159 19 0.16
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (159 bp):
ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGAGAGAATGAAATCCCAAAATAAAATTATT
CAAATAAATCTCATTTGGAAACAAAATCAAAATCAAATAAAATCTATTAAACGGCGAGAATAAAT
CCCAAAATAGAATTATTTAATTAAATCTT
Found at i:16751434 original size:76 final size:77
Alignment explanation
Indices: 16751216--16751514 Score: 323
Period size: 82 Copynumber: 3.8 Consensus size: 77
16751206 CAGAATTAAA
* * * * * * *
16751216 ATTTTGAAACAAAATCAAAATCAATTCTGTTGAACGA-TAGGATGAAATCCCAAAATAAAATTAT
1 ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGACGAGAAT-AAATCCCAAAATAGAATTAT
16751280 TTAATTAAATCTT
65 TTAATTAAATCTT
* * *
16751293 GTTTGGAAACAAAATCAAAATCAAATAAAATTTGTTAAACGGCGAGAATAAATCCCAAAATAGAA
1 ATTTGGAAACAAAATC---A--AAATAAAATCTGTTAAACGACGAGAATAAATCCCAAAATAGAA
16751358 TTATTTAATTAAATCTT
61 TTATTTAATTAAATCTT
*
16751375 ATTTGGAAACAAAATC-AAATAAAATCTGTTAAACGACGAGAATAAATCCCGAAATAGAATTATT
1 ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGACGAGAATAAATCCCAAAATAGAATTATT
* * * *
16751439 CAAATAATTCTC
66 TAATTAAATCTT
* * *
16751451 ATTTGGAAATAAAATCAAAATGGAATAAAATCTATTAAACGGCGAGAATAAATCCCAAAATAGA
1 ATTTGGAAACAAAATC--AA---AATAAAATCTGTTAAACGACGAGAATAAATCCCAAAATAGA
16751515 TTTTATTCAA
Statistics
Matches: 188, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
76 68 0.36
77 14 0.07
79 1 0.01
80 1 0.01
82 100 0.53
83 4 0.02
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (77 bp):
ATTTGGAAACAAAATCAAAATAAAATCTGTTAAACGACGAGAATAAATCCCAAAATAGAATTATT
TAATTAAATCTT
Found at i:16758798 original size:22 final size:22
Alignment explanation
Indices: 16758746--16758806 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
16758736 GCTTGTACGG
* *
16758746 GATTTGCACTATGGTGCCTACT
1 GATTTGCACTACGATGCCTACT
* * *
16758768 GGTTCGCACTACGATGCCTATT
1 GATTTGCACTACGATGCCTACT
*
16758790 GATTTGCACTTCGATGC
1 GATTTGCACTACGATGC
16758807 ACACTAATTC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (22 bp):
GATTTGCACTACGATGCCTACT
Found at i:16767088 original size:43 final size:43
Alignment explanation
Indices: 16767027--16767109 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 43
16767017 TATGATATTC
*
16767027 TGTAAGACCATGTTTGGGACATTGGCATCGAT-TTGAGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTG-GATTTTG
*
16767070 TGTAAGACCCTGTCTGGGACATTGGCATCGATATTGGATT
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATTGGATT
16767110 ACATGTAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 34 0.92
44 3 0.08
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATTGGATTTTG
Found at i:16767117 original size:43 final size:43
Alignment explanation
Indices: 16767027--16767120 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
16767017 TATGATATTC
* ***
16767027 TGTAAGACCATGTTTGGGACATTGGCATCGATTTGAGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATTTGAGATTACA
*
16767070 TGTAAGACCCTGTCTGGGACATTGGCATCGATATTG-GATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGAT-TTGAGATTACA
16767113 TGTAAGAC
1 TGTAAGAC
16767121 ATCGTTTGGG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 42 0.93
44 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATTTGAGATTACA
Found at i:16767140 original size:43 final size:43
Alignment explanation
Indices: 16767027--16767132 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
16767017 TATGATATTC
***
16767027 TGTAAGACCAT-GTTTGGGACATTGGCATCGATTTGAGATTTTG
1 TGTAAGA-CATCGTTTGGGACATTGGCATCGATTTGAGATTACA
* *
16767070 TGTAAGAC-CCTGTCTGGGACATTGGCATCGATATTG-GATTACA
1 TGTAAGACATC-GTTTGGGACATTGGCATCGAT-TTGAGATTACA
16767113 TGTAAGACATCGTTTGGGAC
1 TGTAAGACATCGTTTGGGAC
16767133 GTAGGCATTG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
42 1 0.02
43 47 0.90
44 4 0.08
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACATCGTTTGGGACATTGGCATCGATTTGAGATTACA
Found at i:16775911 original size:3 final size:3
Alignment explanation
Indices: 16775903--16775955 Score: 97
Period size: 3 Copynumber: 17.3 Consensus size: 3
16775893 CTTTCATTTC
16775903 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
16775951 GTAT T
1 -TAT T
16775956 GATGCATTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:16780245 original size:15 final size:16
Alignment explanation
Indices: 16780220--16780249 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16780210 CATCGAAATC
16780220 TCCATCTAATGCTGGA
1 TCCATCTAATGCTGGA
16780236 TCCA-CTAATGCTGG
1 TCCATCTAATGCTGG
16780250 GAGATCCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (16 bp):
TCCATCTAATGCTGGA
Done.