Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 66 of 213
Found at i:17864671 original size:8 final size:7
Alignment explanation
Indices: 17864653--17864690 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
17864643 ATAATATAAG
17864653 TTATGTA
1 TTATGTA
17864660 TTATGTTA
1 TTATG-TA
17864668 TTATGTA
1 TTATGTA
17864675 TTATGTA
1 TTATGTA
17864682 --ATGTA
1 TTATGTA
17864687 TTAT
1 TTAT
17864691 CAGATTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (7 bp):
TTATGTA
Found at i:17864671 original size:27 final size:26
Alignment explanation
Indices: 17864638--17864710 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
17864628 AAGTTATGCA
*
17864638 AGATTATAATATAAGTTATGTATTATG
1 AGATTAT-ATATAAGTTATGTATTATC
** * * *
17864665 TTATTATGTATTATGTAATGTATTATC
1 AGATTATATA-TAAGTTATGTATTATC
17864692 AGATTATATATAAGTTATG
1 AGATTATATATAAGTTATG
17864711 AAAGTTATTA
Statistics
Matches: 34, Mismatches: 11, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (26 bp):
AGATTATATATAAGTTATGTATTATC
Found at i:17864703 original size:53 final size:52
Alignment explanation
Indices: 17864638--17864808 Score: 175
Period size: 53 Copynumber: 3.4 Consensus size: 52
17864628 AAGTTATGCA
17864638 AGATTATAATATAAGTTATGTATTATGTTATTATGTATTATGTAATGTATTATC
1 AGATTAT-ATATAAGTTATGTATTATGTTATTATGTATTATGTAAT-TATTATC
*
17864692 AGATTATATATAAGTTATG-A--AAGTTATTATGTA--A-G---TTA-TA-C
1 AGATTATATATAAGTTATGTATTATGTTATTATGTATTATGTAATTATTATC
* *
17864733 AAGCTTATATATAAGTTATGTATTATGTTATTATGTATTATGTAATTTATTATG
1 -AGATTATATATAAGTTATGTATTATGTTATTATGTATTATGTAA-TTATTATC
** *
17864787 TTATTATATATACGTTATGTAT
1 AGATTATATATAAGTTATGTAT
17864809 GCTGTAAAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 27
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 20 0.21
43 3 0.03
44 1 0.01
45 12 0.12
47 2 0.02
48 2 0.02
50 12 0.12
52 4 0.04
53 32 0.33
54 7 0.07
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (52 bp):
AGATTATATATAAGTTATGTATTATGTTATTATGTATTATGTAATTATTATC
Found at i:17864727 original size:21 final size:22
Alignment explanation
Indices: 17864702--17864787 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 22
17864692 AGATTATATA
17864702 TAAGTTATGA-AAGTTATTATG
1 TAAGTTATGATAAGTTATTATG
* *
17864723 TAAGTTAT-ACAAGCTTA-TATA
1 TAAGTTATGATAAG-TTATTATG
*
17864744 TAAGTTATGTATTATGTTATTATG
1 TAAGTTATG-A-TAAGTTATTATG
*
17864768 T-A-TTATG-TAATTTATTATG
1 TAAGTTATGATAAGTTATTATG
17864787 T
1 T
17864788 TATTATATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
19 11 0.21
20 1 0.02
21 22 0.42
22 8 0.15
23 5 0.09
24 6 0.11
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (22 bp):
TAAGTTATGATAAGTTATTATG
Found at i:17864766 original size:8 final size:7
Alignment explanation
Indices: 17864748--17864793 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
17864738 TATATATAAG
17864748 TTATGTA
1 TTATGTA
17864755 TTATGTTA
1 TTATG-TA
17864763 TTATGTA
1 TTATGTA
17864770 TTATGTA
1 TTATGTA
*
17864777 --ATTTA
1 TTATGTA
17864782 TTATGTTA
1 TTATG-TA
17864790 TTAT
1 TTAT
17864794 ATATACGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:17864768 original size:15 final size:15
Alignment explanation
Indices: 17864748--17864793 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
17864738 TATATATAAG
17864748 TTATGTATTATGTTA
1 TTATGTATTATGTTA
17864763 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
17864777 --ATTTATTATGTTA
1 TTATGTATTATGTTA
17864790 TTAT
1 TTAT
17864794 ATATACGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:17864793 original size:95 final size:96
Alignment explanation
Indices: 17864606--17864805 Score: 312
Period size: 95 Copynumber: 2.1 Consensus size: 96
17864596 AGTGGTGTAT
* * *
17864606 TAAGCTATGGAAGTTATTATGTAAGTTATGCAAGATTATAATATAAGTTATGTATTATGTTATTA
1 TAAGTTATGAAAGTTATTATGTAAGTTATACAAGATTATAATATAAGTTATGTATTATGTTATTA
17864671 TGTATTATGTAATGTATTATCAGATTATATA
66 TGTATTATGTAATGTATTATCAGATTATATA
*
17864702 TAAGTTATGAAAGTTATTATGTAAGTTATACAAGCTTAT-ATATAAGTTATGTATTATGTTATTA
1 TAAGTTATGAAAGTTATTATGTAAGTTATACAAGATTATAATATAAGTTATGTATTATGTTATTA
* ***
17864766 TGTATTATGTAATTTATTATGTTATTATATA
66 TGTATTATGTAATGTATTATCAGATTATATA
*
17864797 TACGTTATG
1 TAAGTTATG
17864806 TATGCTGTAA
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
95 60 0.63
96 35 0.37
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.47
Consensus pattern (96 bp):
TAAGTTATGAAAGTTATTATGTAAGTTATACAAGATTATAATATAAGTTATGTATTATGTTATTA
TGTATTATGTAATGTATTATCAGATTATATA
Found at i:17864935 original size:19 final size:20
Alignment explanation
Indices: 17864899--17864940 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
17864889 TTATATAAAT
*
17864899 AAAATATTTAAATTTTTA-A
1 AAAATATATAAATTTTTACA
17864918 AAAATATAT-AATTATTTACA
1 AAAATATATAAATT-TTTACA
17864938 AAA
1 AAA
17864941 CGTGTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 4 0.20
19 12 0.60
20 4 0.20
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATATATAAATTTTTACA
Found at i:17865018 original size:61 final size:61
Alignment explanation
Indices: 17864927--17865074 Score: 176
Period size: 61 Copynumber: 2.4 Consensus size: 61
17864917 AAAAATATAT
* * * *
17864927 AATTATTTACAAAACGTGTAAAATTGATACTTA-TAAA-TTTTATTAATAATAAATCTAGAAC
1 AATTATTTACAAAACTTATAAATTTAATAC-TACTAAATTTTTA-TAATAATAAATCTAGAAC
* * * *
17864988 ACATT-TTTAGAAAACTTATAAATTTAATACTACTAAATTTTTATACTAATAAATTTAGAAT
1 A-ATTATTTACAAAACTTATAAATTTAATACTACTAAATTTTTATAATAATAAATCTAGAAC
17865049 AATTATTTACAAAACTTATAAATTTA
1 AATTATTTACAAAACTTATAAATTTA
17865075 GAAAACTTAT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
60 5 0.07
61 61 0.82
62 8 0.11
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (61 bp):
AATTATTTACAAAACTTATAAATTTAATACTACTAAATTTTTATAATAATAAATCTAGAAC
Found at i:17865026 original size:15 final size:15
Alignment explanation
Indices: 17865005--17865044 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
17864995 TAGAAAACTT
17865005 ATAAATTTAATACTA
1 ATAAATTTAATACTA
* *
17865020 CTAAATTTTTATACTA
1 ATAAA-TTTAATACTA
17865036 ATAAATTTA
1 ATAAATTTA
17865045 GAATAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:17865079 original size:17 final size:17
Alignment explanation
Indices: 17865053--17865085 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17865043 TAGAATAATT
17865053 ATTTACAAAACTTATAA
1 ATTTACAAAACTTATAA
*
17865070 ATTTAGAAAACTTATA
1 ATTTACAAAACTTATA
17865086 TAGAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (17 bp):
ATTTACAAAACTTATAA
Found at i:17866756 original size:20 final size:20
Alignment explanation
Indices: 17866731--17866770 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
17866721 AATAGATGAA
17866731 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
17866751 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
17866771 AAGAAAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.45, T:0.10
Consensus pattern (20 bp):
GAAAGGATGAGGGGAAATCG
Found at i:17866785 original size:22 final size:19
Alignment explanation
Indices: 17866731--17866809 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 19
17866721 AATAGATGAA
17866731 GAAAGGATGAGGGGAAATCG
1 GAAA-GATGAGGGGAAATCG
17866751 GAAAGGATGAGGGGAAATCG
1 GAAA-GATGAGGGGAAATCG
* * *
17866771 AAGAAAGACTTA-GGG-ATTTG
1 --GAAAGA-TGAGGGGAAATCG
*
17866791 GAAGGATGAGGGGAAATCG
1 GAAAGATGAGGGGAAATCG
17866810 CAGAAAGACT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
17 2 0.04
18 8 0.17
19 3 0.06
20 23 0.49
21 5 0.11
22 6 0.13
ACGTcount: A:0.39, C:0.05, G:0.42, T:0.14
Consensus pattern (19 bp):
GAAAGATGAGGGGAAATCG
Found at i:17866799 original size:39 final size:39
Alignment explanation
Indices: 17866753--17866830 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
17866743 GGAAATCGGA
17866753 AAGGATGAGGGGAAATCGAAGAAAGACTTAGGGATTTGG
1 AAGGATGAGGGGAAATCGAAGAAAGACTTAGGGATTTGG
* *
17866792 AAGGATGAGGGGAAATCGCAGAAAGACTTAGGGGTTTGG
1 AAGGATGAGGGGAAATCGAAGAAAGACTTAGGGATTTGG
17866831 CTGAAAAGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.06, G:0.40, T:0.18
Consensus pattern (39 bp):
AAGGATGAGGGGAAATCGAAGAAAGACTTAGGGATTTGG
Found at i:17870135 original size:115 final size:113
Alignment explanation
Indices: 17869932--17870140 Score: 260
Period size: 115 Copynumber: 1.8 Consensus size: 113
17869922 CCCACGAACT
* * * ** *
17869932 CTAATCTACCTCAAGACCAAACGGTGCATTTTGGTTAAGATATTGGCGGCGCTTTTTGTAATACG
1 CTAATATACCTCAAAACCAAACGCTGCATTTTGGTTAAGATATTGGCGGCGCTTCATATAATACG
* *
17869997 CCGCTAATACTGTTCTTTAGCGGCGTTTTCTCGTAAACGCCACTAATA
66 CCACTAATACTGTTCTTTAGCGGCATTTTCTCGTAAACGCCACTAATA
* * *
17870045 CTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTTGCGGCGCTTACATATAA-
1 CTAATATACCTCAAAACCAAACGCTGCATTTTGGTTAA-G-ATATTGGCGGCGCTT-CATATAAT
*
17870109 ACGCCACTAATGA-TGTTCTTTTGCGGCATTTT
63 ACGCCACTAAT-ACTGTTCTTTAGCGGCATTTT
17870141 TTAGAAAATG
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
113 34 0.43
114 1 0.01
115 40 0.50
116 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (113 bp):
CTAATATACCTCAAAACCAAACGCTGCATTTTGGTTAAGATATTGGCGGCGCTTCATATAATACG
CCACTAATACTGTTCTTTAGCGGCATTTTCTCGTAAACGCCACTAATA
Found at i:17872894 original size:25 final size:26
Alignment explanation
Indices: 17872844--17872894 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
17872834 GTTATAACTT
17872844 TTTTTTATTTACCAAAAAATATATAAC
1 TTTTTTATTTACC-AAAAATATATAAC
17872871 TTTTTTATTTACC-AAAATATATAA
1 TTTTTTATTTACCAAAAATATATAA
17872895 AAAAACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 11 0.46
27 13 0.54
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (26 bp):
TTTTTTATTTACCAAAAATATATAAC
Found at i:17873246 original size:3 final size:3
Alignment explanation
Indices: 17873240--17873286 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
17873230 ATTATTATTA
17873240 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
17873287 AGTATTAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:17873508 original size:36 final size:35
Alignment explanation
Indices: 17873437--17873513 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 35
17873427 AGTTAGTTAG
* *
17873437 TTAGT-TATTATTTTTAGTAAAATTAATAATTTTA
1 TTAGTGTATTATTTTGAGTAAAATTAATAATATTA
*
17873471 TT-GTGTATTATTTTGAGTATAAAATTATTAATATTA
1 TTAGTGTATTATTTTGAG--TAAAATTAATAATATTA
17873507 TTAGTGT
1 TTAGTGT
17873514 GTTAGTTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
33 2 0.06
34 13 0.36
36 17 0.47
37 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (35 bp):
TTAGTGTATTATTTTGAGTAAAATTAATAATATTA
Found at i:17875520 original size:670 final size:670
Alignment explanation
Indices: 17874240--17875580 Score: 2448
Period size: 670 Copynumber: 2.0 Consensus size: 670
17874230 GACGATGAAG
*
17874240 ATGTCAACAACGATGAAGGCATTAACGCTTCTTCGGTCGGGGAGCAGATGCGGCGTATTTTGATA
1 ATGTCAACAACGATGAAGGCATTAACGCTTCTTCGGTCGGGGAGCAGATGCAGCGTATTTTGATA
* *
17874305 CACAATAATCTTGGGCAACACATGTCGCTCATAAACCCCGACGCAGCGTATGTAGCTGAGTTTTC
66 CACAATAATCTTGGGCAACACATGTCACTCATAAACCCCGACGCAGCGTATGTAGCTGAGTTTCC
*
17874370 GGAGTACCCTGAAATAGTTCATTGTCACGGGCTGGCCGTAACATCTGATGATGATGAGTTATTCA
131 GGAGTACCCTGAAATAGTTCATTGTCACAGGCTGGCCGTAACATCTGATGATGATGAGTTATTCA
17874435 TTGGCCAGAGATTCAGTTGTAAAGAAGAGTGCGTATATGCCATTAAACGGTACAGCATGAAGATA
196 TTGGCCAGAGATTCAGTTGTAAAGAAGAGTGCGTATATGCCATTAAACGGTACAGCATGAAGATA
*
17874500 TCGGTGGATTATAAAGTCTCCGTGTCTACTCCGATAATATATGTTGGGGAGTGTTGAAAGGTAGC
261 TCGGTGGATTATAAAGTCTCCGTGTCTACTCCGATAATATATGTTGGGAAGTGTTGAAAGGTAGC
*
17874565 GGAAGGCTGCAATTGGCGGGTACGAGCTGCATTCATTAGAAGTTCTCAGATGTGGGAGATACGAA
326 GGAAGGCTACAATTGGCGGGTACGAGCTGCATTCATTAGAAGTTCTCAGATGTGGGAGATACGAA
*
17874630 AATTTATTGGTCCTCATACATGCACATCAACACGTATGACAGAAGATCATGGAAAACTTGATTCG
391 AATTTATTGGTCCTCATACATGCACATAAACACGTATGACAGAAGATCATGGAAAACTTGATTCG
*
17874695 AAAACTATTTGTACGTGTATCATGCCGATGGTGAAGGACATGCCGACCATTAAAGTTTTGGTACT
456 AAAACTATTTGTACGTGTATCATACCGATGGTGAAGGACATGCCGACCATTAAAGTTTTGGTACT
* *
17874760 CATTACGGAAATGCAAGCACAATTGCAGTATCGAGTCTAATATCGGAAGGCATGGATAGCTAAAC
521 CATTACGGAAATGCAACCACAATTGCAGTATCGAGTCTAATATCGAAAGGCATGGATAGCTAAAC
*
17874825 AGATGGCGATGGAGCAACTGTATGGGGATTACGATTCATCGTATAACGAGCTTCAAGGTTGGATA
586 AGATGGCGATGGAGCAACTGTATGGGGATTACGATTCATCGTATAACGAGCTTCAAAGTTGGATA
*
17874890 GTTGCTATGCGGGAGTACGT
651 GCTGCTATGCGGGAGTACGT
*
17874910 ATGTCAACAACGATGAAGGCATTAATGCTTCTTCGGTCGGGGAGCAGATGCAGCGTATTTTGATA
1 ATGTCAACAACGATGAAGGCATTAACGCTTCTTCGGTCGGGGAGCAGATGCAGCGTATTTTGATA
* * * *
17874975 CACAATAATCTTGGGCCATACATGTCACTCATAGACTCCGACGCAGCGTATGTAGCTGAGTTTCC
66 CACAATAATCTTGGGCAACACATGTCACTCATAAACCCCGACGCAGCGTATGTAGCTGAGTTTCC
17875040 GGAGTACCCTGAAATAGTTCATTGTCACAGGCTGGCCGTAACATCTGATGATGATGAGTTATTCA
131 GGAGTACCCTGAAATAGTTCATTGTCACAGGCTGGCCGTAACATCTGATGATGATGAGTTATTCA
17875105 TTGGCCAGAGATTCAGTTGTAAAGAAGAGTGCGTATATGCCATTAAACGGTACAGCATGAAGATA
196 TTGGCCAGAGATTCAGTTGTAAAGAAGAGTGCGTATATGCCATTAAACGGTACAGCATGAAGATA
* *
17875170 TCGGTGGATTATAAAGTCTTCGTGTCTACTCCGATAATATATGTTGGGAAGTGTTGGAAGGTAGC
261 TCGGTGGATTATAAAGTCTCCGTGTCTACTCCGATAATATATGTTGGGAAGTGTTGAAAGGTAGC
*
17875235 GGAAGGCTACAATTGGCGGGTACGAGCTGCATTCATTAGAAGTTCTTAGATGTGGGAGATACGAA
326 GGAAGGCTACAATTGGCGGGTACGAGCTGCATTCATTAGAAGTTCTCAGATGTGGGAGATACGAA
*
17875300 AATTTGTTGGTCCTCATACATGCACATAAACACGTATGACAGAAGATCATGGAAAACTTGATTCG
391 AATTTATTGGTCCTCATACATGCACATAAACACGTATGACAGAAGATCATGGAAAACTTGATTCG
*
17875365 AAAACTATTTGTACGTGTATCATACCGATGGTGAATGACATGCCGACCATTAAAGTTTTGGTACT
456 AAAACTATTTGTACGTGTATCATACCGATGGTGAAGGACATGCCGACCATTAAAGTTTTGGTACT
* * *
17875430 TATTGCGGAAATGCAACCACAATTGCAGTATCGAGTCTCATATCGAAAGGCATGGATAGCTAAAC
521 CATTACGGAAATGCAACCACAATTGCAGTATCGAGTCTAATATCGAAAGGCATGGATAGCTAAAC
*
17875495 AGATGGCGATGGAGCAACTGTATGGGGATTACGATTCGTCGTATAACGAGCTTCAAAGTTGGATA
586 AGATGGCGATGGAGCAACTGTATGGGGATTACGATTCATCGTATAACGAGCTTCAAAGTTGGATA
17875560 GCTGCTATGCGGGAGTACGT
651 GCTGCTATGCGGGAGTACGT
17875580 A
1 A
17875581 CCGGGGACTG
Statistics
Matches: 645, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
670 645 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (670 bp):
ATGTCAACAACGATGAAGGCATTAACGCTTCTTCGGTCGGGGAGCAGATGCAGCGTATTTTGATA
CACAATAATCTTGGGCAACACATGTCACTCATAAACCCCGACGCAGCGTATGTAGCTGAGTTTCC
GGAGTACCCTGAAATAGTTCATTGTCACAGGCTGGCCGTAACATCTGATGATGATGAGTTATTCA
TTGGCCAGAGATTCAGTTGTAAAGAAGAGTGCGTATATGCCATTAAACGGTACAGCATGAAGATA
TCGGTGGATTATAAAGTCTCCGTGTCTACTCCGATAATATATGTTGGGAAGTGTTGAAAGGTAGC
GGAAGGCTACAATTGGCGGGTACGAGCTGCATTCATTAGAAGTTCTCAGATGTGGGAGATACGAA
AATTTATTGGTCCTCATACATGCACATAAACACGTATGACAGAAGATCATGGAAAACTTGATTCG
AAAACTATTTGTACGTGTATCATACCGATGGTGAAGGACATGCCGACCATTAAAGTTTTGGTACT
CATTACGGAAATGCAACCACAATTGCAGTATCGAGTCTAATATCGAAAGGCATGGATAGCTAAAC
AGATGGCGATGGAGCAACTGTATGGGGATTACGATTCATCGTATAACGAGCTTCAAAGTTGGATA
GCTGCTATGCGGGAGTACGT
Found at i:17879294 original size:152 final size:152
Alignment explanation
Indices: 17879018--17879327 Score: 566
Period size: 152 Copynumber: 2.0 Consensus size: 152
17879008 CTACTGACAC
* * *
17879018 AAATCCTGCTAGCTCCAGGTACGGTAGCAATCGATCATCTGGAGCTATCTTTAAAACACTCACAC
1 AAATCCGGCTAGCTCCAGGTACGGCAGCAATCGATCATCCGGAGCTATCTTTAAAACACTCACAC
* *
17879083 GGCCCCTTAATACTCGGAACGAGTCTTGATAGTGTTAAATTACAGAAATAATATTACGATAACAT
66 GGCCCCTTAATACTCGGAACGAGTCCTGATAGTGTTAAATTACAGAAACAATATTACGATAACAT
17879148 AATTTATTTGTATATACTGCGT
131 AATTTATTTGTATATACTGCGT
17879170 AAATCCGGCTAGCTCCAGGTACGGCAGCAATCGATCATCCGGAGCTATCTTTAAAACACTCACAC
1 AAATCCGGCTAGCTCCAGGTACGGCAGCAATCGATCATCCGGAGCTATCTTTAAAACACTCACAC
17879235 GGCCCCTTAATACTCGGAACGAGTCCTGATAGTGTTAAATTACAGAAACAATATTACGATAACAT
66 GGCCCCTTAATACTCGGAACGAGTCCTGATAGTGTTAAATTACAGAAACAATATTACGATAACAT
17879300 AATTTATTTGTATATACTGCGT
131 AATTTATTTGTATATACTGCGT
*
17879322 ATATCC
1 AAATCC
17879328 TTTTTAAATA
Statistics
Matches: 152, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
152 152 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (152 bp):
AAATCCGGCTAGCTCCAGGTACGGCAGCAATCGATCATCCGGAGCTATCTTTAAAACACTCACAC
GGCCCCTTAATACTCGGAACGAGTCCTGATAGTGTTAAATTACAGAAACAATATTACGATAACAT
AATTTATTTGTATATACTGCGT
Found at i:17879494 original size:15 final size:15
Alignment explanation
Indices: 17879474--17879505 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
17879464 AAAAAATATC
17879474 ATAATTTCTAAATTT
1 ATAATTTCTAAATTT
17879489 ATAATTTCTAAATTT
1 ATAATTTCTAAATTT
17879504 AT
1 AT
17879506 TAGCCGCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
ATAATTTCTAAATTT
Found at i:17879824 original size:23 final size:23
Alignment explanation
Indices: 17879793--17879839 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
17879783 GCAGTTTTTT
17879793 ATATATTTTGGTAAATAAAAAAA
1 ATATATTTTGGTAAATAAAAAAA
*
17879816 ATATTTTTTGGTAAATAAAAAAA
1 ATATATTTTGGTAAATAAAAAAA
17879839 A
1 A
17879840 CTTATGACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (23 bp):
ATATATTTTGGTAAATAAAAAAA
Found at i:17880594 original size:22 final size:22
Alignment explanation
Indices: 17880569--17880745 Score: 95
Period size: 22 Copynumber: 8.1 Consensus size: 22
17880559 ACCTTTTTTT
17880569 TTTCTTTTTTTTTCTCTTCTCC
1 TTTCTTTTTTTTTCTCTTCTCC
** *
17880591 TTTCCTTTCCTTTTCT-TTCCTTC
1 TTT-CTTTTTTTTTCTCTT-CTCC
*
17880614 TTTCTTTCTTTTT-TCTTCTCC
1 TTTCTTTTTTTTTCTCTTCTCC
* *
17880635 TTTC-CTTTTCTTCTTCTT-T-C
1 TTTCTTTTTTTTTC-TCTTCTCC
17880655 TTTC--TTTTTTTCTCTTCTCC
1 TTTCTTTTTTTTTCTCTTCTCC
* * * *
17880675 TTCCCTTTTCTTTC-CTTCT-T
1 TTTCTTTTTTTTTCTCTTCTCC
*
17880695 TTTCTTTCTTTCTTTCCTCTCCTCTC
1 TTTCTTT-TTT-TTT-CTCTTCTC-C
*
17880721 TTTCTTTCTTTCTTTC-CCTCTCC
1 TTTCTTT-TTT-TTTCTCTTCTCC
17880744 TT
1 TT
17880746 CTGGTCTCCC
Statistics
Matches: 121, Mismatches: 19, Indels: 29
0.72 0.11 0.17
Matches are distributed among these distances:
18 4 0.03
19 8 0.07
20 19 0.16
21 16 0.13
22 30 0.25
23 20 0.17
24 8 0.07
25 1 0.01
26 15 0.12
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTCTTTTTTTTTCTCTTCTCC
Found at i:17880618 original size:4 final size:4
Alignment explanation
Indices: 17880602--17880736 Score: 84
Period size: 4 Copynumber: 33.0 Consensus size: 4
17880592 TTCCTTTCCT
*
17880602 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTCC TTTCC TTT- TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C TTTC T-TTC
* * * *
17880648 -TTC TTTC TTTC TTTT TTTC TCTTC -TCC TTCCC TTTTC TTTC CTTC -TT-
1 TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TT-TC -TTTC TTTC TTTC TTTC
* *
17880695 TTTC TTTC TTTC TTTCC TCTCC TCTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC TTTC
17880737 CCTCTCCTTC
Statistics
Matches: 106, Mismatches: 11, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
3 13 0.12
4 70 0.66
5 17 0.16
6 6 0.06
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:17880652 original size:45 final size:45
Alignment explanation
Indices: 17880561--17880710 Score: 182
Period size: 45 Copynumber: 3.4 Consensus size: 45
17880551 AAAAAATTAC
* *
17880561 CTTT-TTTTTTTCTTTTTTTTTCTCTTCTCCTTTCCTTTCCTT-TT
1 CTTTCTTTCTTTCTTTCTTTTT-TCTTCTCCTTTCCTTTCCTTCTT
* *
17880605 CTTTCCTTCTTTCTTTCTTTTTTCTTCTCCTTTCCTTTTCTTCTT
1 CTTTCTTTCTTTCTTTCTTTTTTCTTCTCCTTTCCTTTCCTTCTT
* * * *
17880650 CTTTCTTTCTTTTTTTCTCTTCTCCTTC-CCTTTTCTTTCCTTCTT
1 CTTTCTTTCTTTCTTTCT-TTTTTCTTCTCCTTTCCTTTCCTTCTT
17880695 -TTTCTTTCTTTCTTTC
1 CTTTCTTTCTTTCTTTC
17880711 CTCTCCTCTC
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
44 38 0.41
45 47 0.51
46 7 0.08
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (45 bp):
CTTTCTTTCTTTCTTTCTTTTTTCTTCTCCTTTCCTTTCCTTCTT
Found at i:17880729 original size:44 final size:44
Alignment explanation
Indices: 17880587--17880732 Score: 121
Period size: 44 Copynumber: 3.4 Consensus size: 44
17880577 TTTTTCTCTT
* *
17880587 CTCCTTTCCTTTCCTTTTCTTTCCTTCTTTCTTTCTTTTTT-CT-T-
1 CTCCTTCCCTTT-C-TTTCCTT-CTTCTTTCTTTCTTTTTTCCTCTC
* * *
17880631 CTCCTTTCC--T-TTT-CTTCTTCTTTCTTTCTTTTTTTCTCTT
1 CTCCTTCCCTTTCTTTCCTTCTTCTTTCTTTCTTTTTTCCTCTC
17880671 CTCCTTCCCTTTTCTTTCCTTCTT-TTTCTTTCTTTCTTTCCTCTC
1 CTCCTTCCC-TTTCTTTCCTTCTTCTTTCTTTCTTT-TTTCCTCTC
*
17880716 CTCTCTT-TCTTTCTTTC
1 CTC-CTTCCCTTTCTTTC
17880733 TTTCCCTCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
37 18 0.21
38 4 0.05
39 4 0.05
40 8 0.09
42 1 0.01
43 1 0.01
44 31 0.36
45 17 0.20
46 3 0.03
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (44 bp):
CTCCTTCCCTTTCTTTCCTTCTTCTTTCTTTCTTTTTTCCTCTC
Found at i:17880730 original size:84 final size:84
Alignment explanation
Indices: 17880575--17880736 Score: 221
Period size: 84 Copynumber: 2.0 Consensus size: 84
17880565 TTTTTTTCTT
* * * *
17880575 TTTTTTTCTCTTCTCCTTTCCTTTCCTTTTCTTTCCTTCTTTCTTTCTTTTTTCTTCTCCTTTCC
1 TTTTTTTCTCTTCTCCTTCCCTTTCCTTTTCCTTCCTTCTTTCTTTCTTTTTTCCTCTCCTCTCC
17880640 TTTTCTTCTTCTTTCTTTC
66 TTTTCTTCTTCTTTCTTTC
*
17880659 TTTTTTTCTCTTCTCCTTCCCTTTTC-TTTCCTT-CTT-TTTCTTTCTTTCTTTCCTCTCCTCT-
1 TTTTTTTCTCTTCTCCTTCCCTTTCCTTTTCCTTCCTTCTTTCTTTCTTT-TTTCCTCTCCTCTC
17880720 C-TTTC-T-TTCTTTCTTTC
65 CTTTTCTTCTTCTTTCTTTC
17880737 CCTCTCCTTC
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
78 11 0.15
79 1 0.01
80 4 0.06
81 12 0.17
82 14 0.19
83 6 0.08
84 24 0.33
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (84 bp):
TTTTTTTCTCTTCTCCTTCCCTTTCCTTTTCCTTCCTTCTTTCTTTCTTTTTTCCTCTCCTCTCC
TTTTCTTCTTCTTTCTTTC
Found at i:17880816 original size:27 final size:27
Alignment explanation
Indices: 17880778--17880847 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
17880768 CCCTAATATG
17880778 CATTGGTGCCGCCAATGG-TATTGGCAC
1 CATTGGTGCCGCCAATGGCT-TTGGCAC
17880805 CATTGGTGCCGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCTTTGGCAC
*
17880832 CTTTGGTGCCGCCAAT
1 CATTGGTGCCGCCAAT
17880848 CCCATTGGCG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCTTTGGCAC
Found at i:17880855 original size:27 final size:27
Alignment explanation
Indices: 17880778--17880856 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
17880768 CCCTAATATG
*
17880778 CATTGGTGCCGCCAATGGTATTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
*
17880805 CATTGGTGCCGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
* **
17880832 CTTTGGTGCCGCCAATCCCATTGGC
1 CATTGGTGCCGCCAATGGCATTGGC
17880857 GTGACCAGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.27
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCATTGGCAC
Found at i:17880971 original size:26 final size:27
Alignment explanation
Indices: 17880913--17880971 Score: 102
Period size: 28 Copynumber: 2.2 Consensus size: 27
17880903 TTGTTTTTTT
17880913 TTATATATTTTGGTAAATAAAAAAAAG
1 TTATATATTTTGGTAAATAAAAAAAAG
17880940 TATATATATTTTGGTAAAT-AAAAAAAG
1 T-TATATATTTTGGTAAATAAAAAAAAG
17880967 TTATA
1 TTATA
17880972 ACATTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 4 0.13
27 10 0.32
28 17 0.55
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (27 bp):
TTATATATTTTGGTAAATAAAAAAAAG
Found at i:17880977 original size:27 final size:28
Alignment explanation
Indices: 17880914--17880979 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
17880904 TGTTTTTTTT
*
17880914 TATATATTTTGGTAAATAAAAAAAAGTA
1 TATACATTTTGGTAAATAAAAAAAAGTA
*
17880942 TATATATTTTGGTAAAT-AAAAAAAGT-
1 TATACATTTTGGTAAATAAAAAAAAGTA
17880968 TATAACATTTTG
1 TAT-ACATTTTG
17880980 ATTATTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 3 0.08
27 16 0.44
28 17 0.47
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (28 bp):
TATACATTTTGGTAAATAAAAAAAAGTA
Found at i:17885095 original size:273 final size:274
Alignment explanation
Indices: 17884601--17885142 Score: 917
Period size: 273 Copynumber: 2.0 Consensus size: 274
17884591 ATACTCGTGT
17884601 GAACTTAGTAAAAGATTAGGATACATATGGCATGTCATTAGGGTTATACACATAATTGATCAGTT
1 GAACTTAGTAAAAGATTAGGATACATATGGCATGTCATTAGGGTTATACACATAATTGATCAGTT
*
17884666 ATTAACATAATAGTATGAGATCTAATATTTTTTGTAGATTGTCAAGTTATACGTATCATTGGTTT
66 ATTAACATAATAGTATGAGATCTAATATTTGTTGTAGATTGTC-----A-ACGTATCATTGGTTT
* *
17884731 AACCTTGAATGGTAACCTCGATATGATGTTAGCTTGTGTGAGCAAAACGTTCCTGTGTATCCAAT
125 AACCTGGAATGGTAACCTCGATATGATGTTAGCTTGTGTGAGCAAAACGTTCCTCTGTATCCAAT
* *
17884796 TTTGTTGTACTATAGTTCTATTAGTTGAAACTAATCCAATGTAAGTGGAAATCTTAAAATGATTT
190 TTCGTTGTACTATAGTTCTATTAGTTGAAACTAATCCAATGGAAGTGGAAATCTTAAAATGATTT
17884861 GGATGTGGAATGTCATTAGG
255 GGATGTGGAATGTCATTAGG
* *
17884881 GAACTTAGTAAAATATTATGATACATATGGCATGTCATTAGGGTTATACACATAATTGATCAGTT
1 GAACTTAGTAAAAGATTAGGATACATATGGCATGTCATTAGGGTTATACACATAATTGATCAGTT
17884946 ATGT-ACATAATAGTATGAGATCTAATATTTGTTGTAGATTGTC-ACGTATCATTGGTTTAACCT
66 AT-TAACATAATAGTATGAGATCTAATATTTGTTGTAGATTGTCAACGTATCATTGGTTTAACCT
* *
17885009 GGAATGGTAACCTTGATATGATGTTAGCTTGTGTGAGCAAAACGTTCTTCTGTATCCAATTTCGT
130 GGAATGGTAACCTCGATATGATGTTAGCTTGTGTGAGCAAAACGTTCCTCTGTATCCAATTTCGT
*
17885074 TGTACTATAGTTCTATTAGTTGAAACTAATCTAATGGAAGTGGAAATCTTAAAATGATTTGGATG
195 TGTACTATAGTTCTATTAGTTGAAACTAATCCAATGGAAGTGGAAATCTTAAAATGATTTGGATG
17885139 TGGA
260 TGGA
17885143 TTACATATGT
Statistics
Matches: 251, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
273 147 0.59
280 103 0.41
281 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (274 bp):
GAACTTAGTAAAAGATTAGGATACATATGGCATGTCATTAGGGTTATACACATAATTGATCAGTT
ATTAACATAATAGTATGAGATCTAATATTTGTTGTAGATTGTCAACGTATCATTGGTTTAACCTG
GAATGGTAACCTCGATATGATGTTAGCTTGTGTGAGCAAAACGTTCCTCTGTATCCAATTTCGTT
GTACTATAGTTCTATTAGTTGAAACTAATCCAATGGAAGTGGAAATCTTAAAATGATTTGGATGT
GGAATGTCATTAGG
Found at i:17888253 original size:3 final size:3
Alignment explanation
Indices: 17888238--17888294 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
17888228 ATTGTTTGGT
17888238 TTA TTA TCT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
17888283 CAA TTA TTA TTA
1 TTA TTA TTA TTA
17888295 GTAGTATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 1 0.02
3 46 0.96
4 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:17911829 original size:13 final size:13
Alignment explanation
Indices: 17911811--17911839 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17911801 CTTTCAATGT
17911811 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17911824 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17911837 ATT
1 ATT
17911840 GTCATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTAATAAAAAGC
Found at i:17916685 original size:13 final size:13
Alignment explanation
Indices: 17916667--17916692 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17916657 TATGAATTTG
17916667 GCCCATTGTAATT
1 GCCCATTGTAATT
17916680 GCCCATTGTAATT
1 GCCCATTGTAATT
17916693 AGACTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:17917133 original size:44 final size:45
Alignment explanation
Indices: 17917065--17917150 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
17917055 GCAGTAAGAT
** * *
17917065 TTGCTATTCTCAATTTGCCCCACTGCAACTTCAGGGGGATAAAAC
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
* *
17917110 TTGCT-TTCTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAA
17917151 GACCTGATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
Found at i:17917446 original size:129 final size:129
Alignment explanation
Indices: 17917274--17917686 Score: 537
Period size: 129 Copynumber: 3.2 Consensus size: 129
17917264 ATCCTCAGGG
* * * *
17917274 AGATGAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
* * * *
17917339 GCTTGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
17917403 AGATAAGATTCGCCGTCTTCGATCTGTCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
*
17917468 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
**** * * * * * ** *
17917532 AGATAAGATTCGCCGTCTTCGATCT-ACTTTGTCGTC-AGTACAGGAAGG-CAATATTTAC-TAT
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACT-G-CAACTTCAGG-GGGATAAGACCTGCTTA-
* *
17917593 CTTCAACCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACAC
62 CTT-AGCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACAC
17917658 TTGA
126 TTGA
17917662 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTCGCCGTCTTCGATCT
17917687 ACTTTGCCGT
Statistics
Matches: 255, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
128 4 0.02
129 160 0.63
130 91 0.36
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (129 bp):
AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:17917641 original size:130 final size:130
Alignment explanation
Indices: 17917342--17917745 Score: 557
Period size: 130 Copynumber: 3.1 Consensus size: 130
17917332 TTACTTAGCT
* * *
17917342 TGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* *** * * * ** *
17917407 AAGATTCGCCGTCTTCGATCT-GTCCCAC-TGCAACTTCAGG-GGGATAAGACCTGCT-TACTT-
66 AAGATTCGCCGTCTTCGATCTACTTTGACGT-CAA-TACAGGAAGG-CAAGATTTACTAT-CTTC
*
17917467 AGCC
127 AACC
*
17917471 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* * *
17917536 AAGATTCGCCGTCTTCGATCTACTTTGTCGTCAGTACAGGAAGGCAATATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
*
17917601 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
*
17917666 AAGATTCGCCGTCTTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
17917731 TGCTCCACTGCAACC
1 TGCTCCACTGCAACC
17917746 GAGGGAGGCG
Statistics
Matches: 248, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
129 96 0.39
130 151 0.61
131 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (130 bp):
TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
Found at i:17917986 original size:87 final size:87
Alignment explanation
Indices: 17917679--17918335 Score: 906
Period size: 87 Copynumber: 7.5 Consensus size: 87
17917669 ATTCGCCGTC
* * * * * * *
17917679 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * * *
17917744 CCGAGGGAGGCGAGGCTGGTGTC
66 CCGATGGAGGCAAGGCT-TTGTT
* * *
17917767 TTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTAT-TTTAAACCTACTCCACTGCA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTT-AACCTGCTCCACTGCA
* * * * *
17917831 ACCGAGGGGGGAAAGG-TTAGGGTC
65 ACCGATGGAGGCAAGGCTT--TGTT
* *
17917855 TTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
*
17917920 CCGAGGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
17917942 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
*
17918007 CCGATGGTGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* **
17918029 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17918094 CTGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
17918116 TTCGATTTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
17918181 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
17918203 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17918268 CCGATGAAGGCAAGGC-TTGCT
66 CCGATGGAGGCAAGGCTTTGTT
* *
17918289 TTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTATCTT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTT
17918336 CACTGATCTG
Statistics
Matches: 515, Mismatches: 49, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
86 48 0.09
87 324 0.63
88 138 0.27
89 5 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:17918280 original size:44 final size:44
Alignment explanation
Indices: 17918142--17918281 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 44
17918132 GTCGATGCAG
*
17918142 GAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACCGAT
1 GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
* * * ** * * * *
17918186 GGAGGCAAGGCTTTG-T-T-TTCGATCTGCTTCGCTGTCAA-TGCA-
1 GAAGGCAA-GATCTGCTATCTTTAACCCGCTTCACTG-CAACCG-AT
17918228 GAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
1 G-AAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
17918273 GAAGGCAAG
1 GAAGGCAAG
17918282 GCTTGCTTTC
Statistics
Matches: 68, Mismatches: 19, Indels: 18
0.65 0.18 0.17
Matches are distributed among these distances:
42 17 0.25
43 12 0.18
44 21 0.31
45 18 0.26
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (44 bp):
GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
Found at i:17922175 original size:13 final size:13
Alignment explanation
Indices: 17922157--17922185 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17922147 CTTTCAATGT
17922157 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17922170 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17922183 ATT
1 ATT
17922186 GTCATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTAATAAAAAGC
Found at i:17926834 original size:13 final size:13
Alignment explanation
Indices: 17926816--17926841 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17926806 TATGAATTTG
17926816 GCCCATTGTAATT
1 GCCCATTGTAATT
17926829 GCCCATTGTAATT
1 GCCCATTGTAATT
17926842 AGACTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:17927281 original size:44 final size:45
Alignment explanation
Indices: 17927213--17927298 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
17927203 GCAGTAAGAT
** * *
17927213 TTGCTATTCTCAATTTGCCCCACTGCAACTTCAGGGGGATAAAAC
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
* *
17927258 TTGCT-TTCTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAA
17927299 GACCTGATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
Found at i:17927607 original size:127 final size:128
Alignment explanation
Indices: 17927421--17927831 Score: 517
Period size: 127 Copynumber: 3.2 Consensus size: 128
17927411 ATCCTCAGGG
* * * *
17927421 AGATGAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAAC-TCAGGGGGATAAGACCTGCTTACTTA
* * * *
17927486 GCTTGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGA
65 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
17927550 AGATAAGATTCGCCGTC-TCGATCTGTCCCACTGCAACTCAGGGGGATAAGACCTGCTTACTTAG
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTCAGGGGGATAAGACCTGCTTACTTAG
*
17927614 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGA
66 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
**** * * * * ** *
17927677 AGATAAGATTCGCCGTCTTCGATCT-ACTTTGTCGTC-AGTACAGGAAGG-CAATATTTAC-TAT
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACT-G-CAACT-CAGG-GGGATAAGACCTGCTTA-
* *
17927738 CTTCAACCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACAC
61 CTT-AGCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACAC
17927803 TTGA
125 TTGA
17927807 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTCGCCGTCTTCGATCT
17927832 ACTTTGCCGT
Statistics
Matches: 252, Mismatches: 23, Indels: 13
0.88 0.08 0.05
Matches are distributed among these distances:
127 104 0.41
128 31 0.12
129 27 0.11
130 90 0.36
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (128 bp):
AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTCAGGGGGATAAGACCTGCTTACTTAG
CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:17927783 original size:130 final size:130
Alignment explanation
Indices: 17927489--17927890 Score: 548
Period size: 130 Copynumber: 3.1 Consensus size: 130
17927479 TTACTTAGCT
* * *
17927489 TGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* *** * * ** *
17927554 AAGATTCGCCGTC-TCGATCT-GTCCCAC-TGCAACT-CAGG-GGGATAAGACCTGCT-TACTT-
66 AAGATTCGCCGTCTTCGATCTACTTTGACGT-CAA-TACAGGAAGG-CAAGATTTACTAT-CTTC
*
17927612 AGCC
127 AACC
*
17927616 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* * *
17927681 AAGATTCGCCGTCTTCGATCTACTTTGTCGTCAGTACAGGAAGGCAATATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
*
17927746 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
*
17927811 AAGATTCGCCGTCTTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
17927876 TGCTCCACTGCAACC
1 TGCTCCACTGCAACC
17927891 GAGGGAGGCG
Statistics
Matches: 247, Mismatches: 21, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
127 74 0.30
128 8 0.03
129 17 0.07
130 148 0.60
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (130 bp):
TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
Found at i:17928000 original size:87 final size:86
Alignment explanation
Indices: 17927824--17928475 Score: 846
Period size: 87 Copynumber: 7.5 Consensus size: 86
17927814 ATTCGCCGTC
* * * * * * *
17927824 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * *
17927889 CCGAGGGAGGCGAGGCTGGTGT
66 CCGATGGAGGCAAGGCTTG-GT
* * * *
17927911 CTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTAT-TTAAACCTACTCCACTGCA
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCA
* * *
17927975 ACCGAGGGGGGAAAGG-TTAGGGT
65 ACCGATGGAGGCAAGGCTT--GGT
* *
17927998 CTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACA
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCA
* *
17928063 ACCGAGGGAGGCAAGGCTTTGT
65 ACCGATGGAGGCAAGGCTTGGT
*
17928085 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17928150 CCGATGGTGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGC-TTGGT
* **
17928172 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17928237 CTGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGC-TTGGT
* *
17928259 TTCGAT-TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGC-A
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
*
17928322 -CGATGGAGGCAAGGCTTTGT
66 CCGATGGAGGCAAGGCTTGGT
* * *
17928342 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17928407 CCGATGAAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGC-TTGGT
* *
17928429 TTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTATCTT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTT
17928476 CACTGATCTG
Statistics
Matches: 505, Mismatches: 50, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
83 9 0.02
84 67 0.13
85 2 0.00
86 144 0.29
87 214 0.42
88 67 0.13
89 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (86 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTGGT
Found at i:17928181 original size:173 final size:174
Alignment explanation
Indices: 17927824--17928475 Score: 897
Period size: 173 Copynumber: 3.8 Consensus size: 174
17927814 ATTCGCCGTC
* * * * * * *
17927824 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCGCTCCACTGCAA
* * * *
17927889 CCGAGGGAGGCGAGGCTGGTG-TCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGC
66 CCGAGGGAGGCAAGGCT-TTGCT-TTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
* * * * * * *
17927953 TAT-TTAAACCTACTCCACTGCAACCGAGGGGGGAAAGG-TTAGGGTC
129 TATCTTTAACCTGCTCCACTGCAACCGATGGAGGCAAGGCTT--TGTT
* * * *
17927999 TTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCGCTCCACTGCAA
*
17928064 CCGAGGGAGGCAAGGCTTTG-TTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTA
66 CCGAGGGAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
* *
17928128 TCTTTAACTTGCTCCACTGCAACCGATGGTGGCAAGGCTTTGTT
131 TCTTTAACCTGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTT
*
17928172 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCGCTCCACTGCAA
* *
17928237 CTGATGGAGGCAAGGCTTTGCTTTCGAT-TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
66 CCGAGGGAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
*
17928301 TCTTTAACCCGCTCCACTGC-A-CGATGGAGGCAAGGCTTTG-T
131 TCTTTAACCTGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTT
* * *
17928342 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCGCTCCACTGCAA
* * *
17928407 CCGATGAAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTA
66 CCGAGGGAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
17928472 TCTT
131 TCTT
17928476 CACTGATCTG
Statistics
Matches: 434, Mismatches: 39, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
170 88 0.20
171 57 0.13
172 1 0.00
173 175 0.40
174 39 0.09
175 74 0.17
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (174 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCGCTCCACTGCAA
CCGAGGGAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
TCTTTAACCTGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTT
Found at i:17928378 original size:257 final size:261
Alignment explanation
Indices: 17927824--17928475 Score: 929
Period size: 257 Copynumber: 2.5 Consensus size: 261
17927814 ATTCGCCGTC
* * * * * * *
17927824 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * * * * *
17927889 CCGAGGGAGGCGAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCT
66 CCGATGGAGGCAAGGCT-TTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCT
* * *
17927954 AT-TTAAACCTACTCCACTGCAACCGAGGGGGGAAAGGTTAGGGTCTTCGATCTGCTTCGCTGTC
130 ATCTTAAACCCACTCCACTGCAACCGAGGGAGGAAAGGTTAGGCTCTTCGATCTGCTTCGCTGTC
* *
17928018 TATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTT
195 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTT
17928083 GT
260 GT
*
17928085 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17928150 CCGATGGTGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTA
66 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTA
* * * * *
17928215 TCTTTAACCCACTCCACTGCAACTGATGGAGGCAAGGCTT-TGCT-TTCGAT-TGCTTCGCTGTC
131 TCTTAAACCCACTCCACTGCAACCGAGGGAGGAAAGG-TTAGGCTCTTCGATCTGCTTCGCTGTC
* *
17928277 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGC-A-CGATGGAGGCAAGGCTTT
195 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTT
17928340 GT
260 GT
* * *
17928342 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * * *
17928407 CCGATGAAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTA
66 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTA
17928472 TCTT
131 TCTT
17928476 CACTGATCTG
Statistics
Matches: 351, Mismatches: 38, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
257 143 0.41
258 1 0.00
259 53 0.15
260 50 0.14
261 102 0.29
262 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (261 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTA
TCTTAAACCCACTCCACTGCAACCGAGGGAGGAAAGGTTAGGCTCTTCGATCTGCTTCGCTGTCG
ATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTTG
T
Found at i:17932321 original size:13 final size:13
Alignment explanation
Indices: 17932303--17932331 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17932293 CTTTCAATGT
17932303 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17932316 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17932329 ATT
1 ATT
17932332 GTCATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTAATAAAAAGC
Found at i:17937130 original size:13 final size:13
Alignment explanation
Indices: 17937112--17937137 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17937102 TATGAATTTG
17937112 GCCCATTGTAATT
1 GCCCATTGTAATT
17937125 GCCCATTGTAATT
1 GCCCATTGTAATT
17937138 AGACTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:17937578 original size:44 final size:45
Alignment explanation
Indices: 17937510--17937595 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
17937500 GCAGTAAGAT
** * *
17937510 TTGCTATTCTCAATTTGCCCCACTGCAACTTCAGGGGGATAAAAC
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
* *
17937555 TTGCT-TTCTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAA
17937596 GACCTGATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
Found at i:17937878 original size:129 final size:129
Alignment explanation
Indices: 17937718--17938130 Score: 537
Period size: 129 Copynumber: 3.2 Consensus size: 129
17937708 ATCCTCAGGG
* * * *
17937718 AGATGAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
* * * *
17937783 GCTTGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
17937847 AGATAAGATTCGCCGTCTTCGATCTGTCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
*
17937912 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
**** * * * * * ** *
17937976 AGATAAGATTCGCCGTCTTCGATCT-ACTTTGTCGTC-AGTACAGGAAGG-CAATATTTAC-TAT
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACT-G-CAACTTCAGG-GGGATAAGACCTGCTTA-
* *
17938037 CTTCAACCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACAC
62 CTT-AGCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACAC
17938102 TTGA
126 TTGA
17938106 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTCGCCGTCTTCGATCT
17938131 ACTTTGCCGT
Statistics
Matches: 255, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
128 4 0.02
129 160 0.63
130 91 0.36
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (129 bp):
AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:17938085 original size:130 final size:130
Alignment explanation
Indices: 17937786--17938189 Score: 557
Period size: 130 Copynumber: 3.1 Consensus size: 130
17937776 TTACTTAGCT
* * *
17937786 TGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* *** * * * ** *
17937851 AAGATTCGCCGTCTTCGATCT-GTCCCAC-TGCAACTTCAGG-GGGATAAGACCTGCT-TACTT-
66 AAGATTCGCCGTCTTCGATCTACTTTGACGT-CAA-TACAGGAAGG-CAAGATTTACTAT-CTTC
*
17937911 AGCC
127 AACC
*
17937915 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* * *
17937980 AAGATTCGCCGTCTTCGATCTACTTTGTCGTCAGTACAGGAAGGCAATATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
*
17938045 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
*
17938110 AAGATTCGCCGTCTTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
17938175 TGCTCCACTGCAACC
1 TGCTCCACTGCAACC
17938190 GAGGGAGGCG
Statistics
Matches: 248, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
129 96 0.39
130 151 0.61
131 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (130 bp):
TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
Found at i:17938299 original size:87 final size:87
Alignment explanation
Indices: 17938123--17938779 Score: 879
Period size: 87 Copynumber: 7.5 Consensus size: 87
17938113 ATTCGCCGTC
* * * * * * *
17938123 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17938188 CCGAGGGAGGCGAGGC-TGGTGT
66 CCGATGGAGGCAAGGCTTGGT-T
* * * *
17938210 CTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTAT-TTAAACCTACTCCACTGCA
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCA
* * * *
17938274 ACCGAGGGGGGAAAGG-TTAGGGTC
65 ACCGATGGAGGCAAGGCTT--GGTT
* *
17938298 TTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17938363 CCGAGGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTGGTT
*
17938385 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17938450 CCGATGGTGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTGGTT
* **
17938472 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * *
17938537 CTGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGCTTGGTT
* * *
17938559 TTCGATTTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
*
17938624 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTGGTT
* * *
17938646 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * *
17938711 CCGATGAAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGCTTGGTT
* *
17938733 TTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTATCTT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTT
17938780 CACTGATCTG
Statistics
Matches: 515, Mismatches: 49, Indels: 11
0.90 0.09 0.02
Matches are distributed among these distances:
87 444 0.86
88 66 0.13
89 5 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTGGTT
Found at i:17938723 original size:44 final size:44
Alignment explanation
Indices: 17938585--17938724 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 44
17938575 GTCGATGCAG
*
17938585 GAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACCGAT
1 GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
* * * ** * * * *
17938629 GGAGGCAAGGCTTTG-T-T-TTCGATCTGCTTCGCTGTCAA-TGCA-
1 GAAGGCAA-GATCTGCTATCTTTAACCCGCTTCACTG-CAACCG-AT
17938671 GAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
1 G-AAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
17938716 GAAGGCAAG
1 GAAGGCAAG
17938725 GCTTTGCTTT
Statistics
Matches: 68, Mismatches: 19, Indels: 18
0.65 0.18 0.17
Matches are distributed among these distances:
42 17 0.25
43 12 0.18
44 21 0.31
45 18 0.26
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (44 bp):
GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
Found at i:17942626 original size:13 final size:13
Alignment explanation
Indices: 17942608--17942636 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17942598 CTTTCAATGT
17942608 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17942621 ATTAATAAAAAGC
1 ATTAATAAAAAGC
17942634 ATT
1 ATT
17942637 GTCATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTAATAAAAAGC
Found at i:17947158 original size:13 final size:13
Alignment explanation
Indices: 17947140--17947165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17947130 TATGAATTTG
17947140 GCCCATTGTAATT
1 GCCCATTGTAATT
17947153 GCCCATTGTAATT
1 GCCCATTGTAATT
17947166 AGACTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:17947606 original size:44 final size:45
Alignment explanation
Indices: 17947538--17947623 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 45
17947528 GCAGTAAGAT
** * *
17947538 TTGCTATTCTCAATTTGCCCCACTGCAACTTCAGGGGGATAAAAC
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
* *
17947583 TTGCT-TTCTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAA
17947624 GACCTGATGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 30 0.86
45 5 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
Found at i:17947953 original size:128 final size:128
Alignment explanation
Indices: 17947747--17948158 Score: 526
Period size: 128 Copynumber: 3.2 Consensus size: 128
17947737 ATCCTCAGGG
* * * *
17947747 AGATGAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCA-GGGGATAAGACCTGCTTACTTA
* * * *
17947812 GCTTGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGA
65 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
17947876 AGATAAGATTCGCCGTCTTCGATCTGTCCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
*
17947941 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGA
66 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
**** * * * * ** *
17948004 AGATAAGATTCGCCGTCTTCGATCT-ACTTTGTCGTC-AGTACAGGAAGG-CAATATTTAC-TAT
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACT-G-CAACTTCAGG--GGATAAGACCTGCTTA-
* *
17948065 CTTCAACCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACAC
61 CTT-AGCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACAC
17948130 TTGA
125 TTGA
17948134 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTCGCCGTCTTCGATCT
17948159 ACTTTGCCGT
Statistics
Matches: 254, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
127 2 0.01
128 115 0.45
129 47 0.19
130 90 0.35
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (128 bp):
AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:17948113 original size:130 final size:130
Alignment explanation
Indices: 17947815--17948217 Score: 557
Period size: 130 Copynumber: 3.1 Consensus size: 130
17947805 TTACTTAGCT
* * *
17947815 TGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* *** * * ** *
17947880 AAGATTCGCCGTCTTCGATCT-GTCCCAC-TGCAACTTCAGG--GGATAAGACCTGCT-TACTT-
66 AAGATTCGCCGTCTTCGATCTACTTTGACGT-CAA-TACAGGAAGG-CAAGATTTACTAT-CTTC
*
17947939 AGCC
127 AACC
*
17947943 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* * *
17948008 AAGATTCGCCGTCTTCGATCTACTTTGTCGTCAGTACAGGAAGGCAATATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
*
17948073 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
*
17948138 AAGATTCGCCGTCTTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
17948203 TGCTCCACTGCAACC
1 TGCTCCACTGCAACC
17948218 GAGGGAGGCG
Statistics
Matches: 248, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
128 87 0.35
129 13 0.05
130 148 0.60
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (130 bp):
TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
Found at i:17948360 original size:87 final size:86
Alignment explanation
Indices: 17948151--17948806 Score: 859
Period size: 87 Copynumber: 7.5 Consensus size: 86
17948141 ATTCGCCGTC
* * * * * * *
17948151 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * *
17948216 CCGAGGGAGGCGAGGCTGGTGT
66 CCGATGGAGGCAAGGCTTG-GT
* * *
17948238 CTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTAT-TTTAAACCTACTCCACTGC
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTT-AACCTGCTCCACTGC
* *
17948302 AACCGA-GGGGGAAAGG-TTAGGGT
64 AACCGATGGAGGCAAGGCTT--GGT
* *
17948325 CTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACA
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCA
* *
17948390 ACCGAGGGAGGCAAGGCTTTGTT
65 ACCGATGGAGGCAAGGC-TTGGT
*
17948413 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17948478 CCGATGGTGGCAAGGCTTTGT
66 CCGATGGAGGCAAGGCTTGGT
* **
17948499 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTATCTTTAACCCACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17948564 CTGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGC-TTGGT
* * *
17948586 TTCGATTTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
*
17948651 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGC-TTGGT
* * *
17948673 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17948738 CCGATGAAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGC-TTGGT
* *
17948760 TTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTATCTT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTT
17948807 CACTGATCTG
Statistics
Matches: 510, Mismatches: 50, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
86 79 0.15
87 359 0.70
88 70 0.14
90 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (86 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTGGT
Found at i:17948614 original size:260 final size:261
Alignment explanation
Indices: 17948151--17948806 Score: 951
Period size: 260 Copynumber: 2.5 Consensus size: 261
17948141 ATTCGCCGTC
* * * * * * *
17948151 TTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * * * *
17948216 CCGAGGGAGGCGAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCT
66 CCGATGGAGGCAAGGCT-TTGT-TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCT
* * *
17948281 AT-TTTAAACCTACTCCACTGCAACCGAGGGGGAAAGGTTAGGGTCTTCGATCTGCTTCGCTGTC
129 ATCTTTAAACCCACTCCACTGCAACCGAGGAGGAAAGGTTAGGCTCTTCGATCTGCTTCGCTGTC
* *
17948345 TATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTT
194 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTT
17948410 GTT
259 GTT
*
17948413 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACTTGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* *
17948478 CCGATGGTGGCAAGGCTTTGTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACTAT
66 CCGATGGAGGCAAGGCTTTGTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTAT
* * * *
17948543 CTTT-AACCCACTCCACTGCAACTGATGGAGGCAAGGCTT-TGCT-TTCGATTTGCTTCGCTGTC
131 CTTTAAACCCACTCCACTGCAACCGA-GGAGGAAAGG-TTAGGCTCTTCGATCTGCTTCGCTGTC
* *
17948605 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTTT
194 GATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTT
17948670 GTT
259 GTT
* * *
17948673 TTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
* * *
17948738 CCGATGAAGGCAAGGCTTTGCTTTCGATCTGCTTCGCTGTCGATGTAGGAAGGCAAGATCTGCTA
66 CCGATGGAGGCAAGGCTTTG-TTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTA
17948803 TCTT
130 TCTT
17948807 CACTGATCTG
Statistics
Matches: 355, Mismatches: 35, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
260 221 0.62
261 61 0.17
262 73 0.21
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (261 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTAT
CTTTAAACCCACTCCACTGCAACCGAGGAGGAAAGGTTAGGCTCTTCGATCTGCTTCGCTGTCGA
TGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTACAACCGAGGGAGGCAAGGCTTTGT
T
Found at i:17948750 original size:44 final size:44
Alignment explanation
Indices: 17948612--17948751 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 44
17948602 GTCGATGCAG
*
17948612 GAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACCGAT
1 GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
* * * ** * * * *
17948656 GGAGGCAAGGCTTTG-T-T-TTCGATCTGCTTCGCTGTCAA-TGCA-
1 GAAGGCAA-GATCTGCTATCTTTAACCCGCTTCACTG-CAACCG-AT
17948698 GAAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
1 G-AAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
17948743 GAAGGCAAG
1 GAAGGCAAG
17948752 GCTTTGCTTT
Statistics
Matches: 68, Mismatches: 19, Indels: 18
0.65 0.18 0.17
Matches are distributed among these distances:
42 17 0.25
43 12 0.18
44 21 0.31
45 18 0.26
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (44 bp):
GAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGCAACCGAT
Found at i:17957162 original size:13 final size:13
Alignment explanation
Indices: 17957144--17957169 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17957134 TATGAATTTG
17957144 GCCCATTGTAATT
1 GCCCATTGTAATT
17957157 GCCCATTGTAATT
1 GCCCATTGTAATT
17957170 AGACTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:17957606 original size:43 final size:45
Alignment explanation
Indices: 17957540--17957624 Score: 111
Period size: 43 Copynumber: 1.9 Consensus size: 45
17957530 GCAGTAAGAT
** *
17957540 TTGCTATTCTCAATTTGCCCCACTGCAACTTCAGGG-GATAAAAC
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
* *
17957584 TTGCT-TTCTCAACCTGCTCCACTGTAACCTCAGGGAGATAA
1 TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAA
17957625 GACCTGATGC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 25 0.71
44 10 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (45 bp):
TTGCTATTCTCAACCTGCCCCACTGCAACCTCAGGGAGATAAAAC
Found at i:17957914 original size:128 final size:128
Alignment explanation
Indices: 17957748--17958158 Score: 533
Period size: 128 Copynumber: 3.2 Consensus size: 128
17957738 ATCCTCAGGG
* * * *
17957748 AGATGAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
* * * *
17957813 CTTGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGA
66 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
*
17957876 AGATAAGATTCGCCGTCTTCGATCTGTCCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
*
17957941 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGA
66 CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
**** * * * * ** *
17958004 AGATAAGATTCGCCGTCTTCGATCT-ACTTTGTCGTC-AGTACAGGAAGG-CAATATTTAC-TAT
1 AGATAAGATTCGCCGTCTTCGATCTGACCCACT-G-CAACTTCAGG--GGATAAGACCTGCTTA-
* *
17958065 CTTCAACCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACAC
61 CTT-AGCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACAC
17958130 TTGA
125 TTGA
17958134 AGATAAGATTCGCCGTCTTCGATCT
1 AGATAAGATTCGCCGTCTTCGATCT
17958159 ACTTTGCCGT
Statistics
Matches: 254, Mismatches: 23, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
127 2 0.01
128 153 0.60
129 9 0.04
130 90 0.35
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (128 bp):
AGATAAGATTCGCCGTCTTCGATCTGACCCACTGCAACTTCAGGGGATAAGACCTGCTTACTTAG
CCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGA
Found at i:17958113 original size:130 final size:130
Alignment explanation
Indices: 17957815--17958217 Score: 557
Period size: 130 Copynumber: 3.1 Consensus size: 130
17957805 TTACTTAGCT
* * *
17957815 TGCTCCACTGCAACCGCAGGGAGAAATGACTTGTGGCTTAAATCTGCTTCTTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* *** * * ** *
17957880 AAGATTCGCCGTCTTCGATCT-GTCCCAC-TGCAACTTCAGG--GGATAAGACCTGCT-TACTT-
66 AAGATTCGCCGTCTTCGATCTACTTTGACGT-CAA-TACAGGAAGG-CAAGATTTACTAT-CTTC
*
17957939 AGCC
127 AACC
*
17957943 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAGTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
* * *
17958008 AAGATTCGCCGTCTTCGATCTACTTTGTCGTCAGTACAGGAAGGCAATATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
*
17958073 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAACTCTGCTTCCTTACACTTGAAGAT
1 TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
*
17958138 AAGATTCGCCGTCTTCGATCTACTTTGCCGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
66 AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
17958203 TGCTCCACTGCAACC
1 TGCTCCACTGCAACC
17958218 GAGGGAGGCG
Statistics
Matches: 248, Mismatches: 21, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
128 87 0.35
129 13 0.05
130 148 0.60
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (130 bp):
TGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGAT
AAGATTCGCCGTCTTCGATCTACTTTGACGTCAATACAGGAAGGCAAGATTTACTATCTTCAACC
Found at i:17958297 original size:88 final size:87
Alignment explanation
Indices: 17958174--17958431 Score: 360
Period size: 87 Copynumber: 3.0 Consensus size: 87
17958164 GCCGTCAATA
* * * *
17958174 CAGGAAGGCAAGATTTACTATCTTCAACCTGCTCCACTGCAACCGAGGGAGGCGAGGCTGGTGTC
1 CAGGAAGGCAAGATCTGCTAT-TTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTC
17958239 TTCGATCTGCTTCGCTGTCTACG
65 TTCGATCTGCTTCGCTGTCTACG
* * *
17958262 CAGGAAGGCAAGATCTGCTATTTTAAACCTACTCCACTGCAACCGAGGG-GGAAAGGTTAGG-GT
1 CAGGAAGGCAAGATCTGCTATTTT-AACCTGCTCCACTGCAACCGAGGGAGGCAAGGCT-GGTGT
*
17958325 CTTCGATCTGCTTCGCTGTCTATG
64 CTTCGATCTGCTTCGCTGTCTACG
* * *
17958349 CAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTACAACCGAGGGAGGCAAGGCT-TTGTT
1 CAGGAAGGCAAGATCTGCTAT-TTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTC
17958413 TTCGATCTGCTTCGCTGTC
65 TTCGATCTGCTTCGCTGTC
17958432 NNNNNNNNNN
Statistics
Matches: 151, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
87 97 0.64
88 54 0.36
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (87 bp):
CAGGAAGGCAAGATCTGCTATTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTCT
TCGATCTGCTTCGCTGTCTACG
Found at i:17971840 original size:40 final size:40
Alignment explanation
Indices: 17971742--17971965 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
17971732 TCCTCGTTCA
* * * * *
17971742 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
17971781 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
17971821 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
17971861 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
17971901 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
17971941 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
17971966 ATATTCACTT
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.22
40 134 0.78
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:17971988 original size:80 final size:80
Alignment explanation
Indices: 17971745--17972003 Score: 274
Period size: 80 Copynumber: 3.3 Consensus size: 80
17971735 TCGTTCAAAT
* * * * * * * *
17971745 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
17971809 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
17971824 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
17971889 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
17971904 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
17971968 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
17971984 GCCTTC-GGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
17972004 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 47 0.30
80 107 0.67
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:17971988 original size:120 final size:118
Alignment explanation
Indices: 17971740--17972003 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 118
17971730 GCTCCTCGTT
* * *
17971740 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
17971805 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
17971859 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
** * * * *
17971924 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
17971980 CAAAGCCTTC-GGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
17972004 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
119 48 0.39
120 69 0.57
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:17972012 original size:40 final size:41
Alignment explanation
Indices: 17971936--17972012 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
17971926 TTAGTATCTC
* * *
17971936 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
*
17971977 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACA-CATTCA
17972013 ATTAATCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
39 10 0.32
40 14 0.45
41 7 0.23
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
Found at i:17973605 original size:44 final size:42
Alignment explanation
Indices: 17973539--17973656 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 42
17973529 TTATGTGTTA
*
17973539 TCGTGTAAGACCACGTCCGGGACGTTGGCATCGACTT-GTGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG--TTAGTGATT
*
17973582 TACGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGTTAGGTGATT
1 T-CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGTTA-GTGATT
* *
17973626 TCATGTAAGACCACGTCTAGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCAT
17973657 TGTATGATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
42 3 0.05
43 25 0.40
44 34 0.54
45 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTTAGTGATT
Found at i:17981204 original size:43 final size:43
Alignment explanation
Indices: 17981092--17981205 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
17981082 TGTGTTATCG
* *
17981092 TGTAAGACCACGTCCGGGACGTTGGCATCGACTTGTGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TTGTGATTTACA
* *
17981136 TGTAAGACC-CTGTTTGGGAAG-TGGCATCG-TTAGGTGATTT-CA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATT--GTGATTTACA
*
17981178 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
17981206 TGTATGATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
41 2 0.03
42 17 0.29
43 23 0.40
44 16 0.28
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTGTGATTTACA
Found at i:17986534 original size:16 final size:16
Alignment explanation
Indices: 17986513--17986545 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
17986503 TGTTCATACA
17986513 CCCATGGTTAGCTTTT
1 CCCATGGTTAGCTTTT
17986529 CCCATGGTTAGCTTTT
1 CCCATGGTTAGCTTTT
17986545 C
1 C
17986546 TTTGTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.27, G:0.18, T:0.42
Consensus pattern (16 bp):
CCCATGGTTAGCTTTT
Found at i:17987881 original size:31 final size:32
Alignment explanation
Indices: 17987830--17987891 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
17987820 ATATAAGAAT
17987830 TATTGTTACATACTTTTTATCATTTTAGTCAC
1 TATTGTTACATACTTTTTATCATTTTAGTCAC
*
17987862 TATTGTTACATA-TTTTTATCGTTTTAGTCA
1 TATTGTTACATACTTTTTATCATTTTAGTCA
17987892 TCGGTTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 17 0.59
32 12 0.41
ACGTcount: A:0.24, C:0.13, G:0.08, T:0.55
Consensus pattern (32 bp):
TATTGTTACATACTTTTTATCATTTTAGTCAC
Found at i:17987900 original size:32 final size:32
Alignment explanation
Indices: 17987831--17987901 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
17987821 TATAAGAATT
*
17987831 ATTGTTACATACTTTTTATCATTTTAGTCACT
1 ATTGTTACATACTTTTTATCATTTTAGTCACG
*
17987863 ATTGTTACATA-TTTTTATCGTTTTAGTCATCG
1 ATTGTTACATACTTTTTATCATTTTAGTCA-CG
*
17987895 GTTGTTA
1 ATTGTTA
17987902 ATTTACCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 17 0.49
32 18 0.51
ACGTcount: A:0.23, C:0.13, G:0.11, T:0.54
Consensus pattern (32 bp):
ATTGTTACATACTTTTTATCATTTTAGTCACG
Found at i:17988275 original size:20 final size:21
Alignment explanation
Indices: 17988252--17988296 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
17988242 AATGAAAAAG
* *
17988252 AAAAATGAA-TTTTTTCTATA
1 AAAAATCAAGTTTTTCCTATA
*
17988272 AAAATTCAAGTTTTTCCTATA
1 AAAAATCAAGTTTTTCCTATA
17988293 AAAA
1 AAAA
17988297 CCTAAGTGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (21 bp):
AAAAATCAAGTTTTTCCTATA
Found at i:17989895 original size:25 final size:23
Alignment explanation
Indices: 17989866--17989920 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
17989856 GTTAAGATAG
*
17989866 TTTATGTT-ATGTTTTTGTTGTATT
1 TTTATGTTAATATTTTT-TTGT-TT
*
17989890 TGTTATTTTAATATTTTTTTGTTT
1 T-TTATGTTAATATTTTTTTGTTT
17989914 TTTATGT
1 TTTATGT
17989921 AGGTAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 5 0.19
24 4 0.15
25 10 0.38
26 7 0.27
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.73
Consensus pattern (23 bp):
TTTATGTTAATATTTTTTTGTTT
Found at i:17991059 original size:14 final size:14
Alignment explanation
Indices: 17991040--17991074 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
17991030 TTGACATTTT
*
17991040 TTCTAATGATATTA
1 TTCTAACGATATTA
17991054 TTCTAACGATATTA
1 TTCTAACGATATTA
17991068 TTCTAAC
1 TTCTAAC
17991075 ATGTAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (14 bp):
TTCTAACGATATTA
Found at i:17991741 original size:12 final size:12
Alignment explanation
Indices: 17991725--17991760 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
17991715 AACTAGAGCT
17991725 AGAGCCAAAGCC
1 AGAGCCAAAGCC
* *
17991737 CGAGCCAAAGCA
1 AGAGCCAAAGCC
17991749 AGAGCCAAAGCC
1 AGAGCCAAAGCC
17991761 TGCTCTAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.33, G:0.25, T:0.00
Consensus pattern (12 bp):
AGAGCCAAAGCC
Found at i:17992341 original size:48 final size:48
Alignment explanation
Indices: 17992175--17992430 Score: 291
Period size: 48 Copynumber: 5.3 Consensus size: 48
17992165 TTATTTATTT
* ** * **
17992175 AATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTATGGTTATA
1 AATTAGA-TACATTACAACATTAAAACGAGGAACAAACTTTGT-AATATA
* ** **
17992224 AATTAGATTA-ATTGCAACATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGA-TACATTACAACATTAAAACGAGGAACAAACTTTGTAAT-ATA
*
17992273 AATTAGATACATTACAACATTAAAACGAGAAACAAACTTTGTAATATA
1 AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
* *
17992321 AATTAGATACATTACAACATTAAAACGAGGGACAAAATTTGTAATATA
1 AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
* * * *
17992369 AATTAGAAATATTACAACATTAAAATGAAGAACAAACTTTGTAATATA
1 AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
*
17992417 AATTAGGTACATTA
1 AATTAGATACATTA
17992431 GCTCAATTCC
Statistics
Matches: 185, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
48 105 0.57
49 80 0.43
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (48 bp):
AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
Found at i:17996261 original size:4 final size:4
Alignment explanation
Indices: 17996252--17996297 Score: 67
Period size: 4 Copynumber: 11.2 Consensus size: 4
17996242 AAAAATACGT
17996252 TTTC TTTC TTTC TTTC TTCTC TTTTC TTTC TTTC TTTC TTT- TTTC T
1 TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC TTTC TTTC TTTC TTTC T
17996298 CCCTCTCTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.08
4 30 0.77
5 4 0.10
6 2 0.05
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:17996294 original size:18 final size:18
Alignment explanation
Indices: 17996256--17996293 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
17996246 ATACGTTTTC
17996256 TTTCTTTCTTTCTTCTCT
1 TTTCTTTCTTTCTTCTCT
17996274 TTTCTTTCTTTCTT-TCT
1 TTTCTTTCTTTCTTCTCT
17996291 TTT
1 TTT
17996294 TTCTCCCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTCTTTCTTCTCT
Found at i:17996309 original size:26 final size:26
Alignment explanation
Indices: 17996252--17996306 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
17996242 AAAAATACGT
* *
17996252 TTTCTTTCTTTCTTTCTTCTCTTTTC
1 TTTCTTTCTTTCTTTCTTCTCCTCTC
*
17996278 TTTCTTTCTTTCTTTTTTCTCCCTCTC
1 TTTCTTTCTTTCTTTCTTCT-CCTCTC
17996305 TT
1 TT
17996307 CTTCCTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (26 bp):
TTTCTTTCTTTCTTTCTTCTCCTCTC
Found at i:17996309 original size:30 final size:30
Alignment explanation
Indices: 17996252--17996318 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
17996242 AAAAATACGT
* * *
17996252 TTTCTTTCTTTCTTTCTTCTCTTTTCTTTC
1 TTTCTTTCTTTCTTTCTCCTCTCTTCTTCC
17996282 TTTCTTTCTTT-TTTCTCCCTCTCTTCTTCC
1 TTTCTTTCTTTCTTTCT-CCTCTCTTCTTCC
17996312 TTATCTT
1 TT-TCTT
17996319 CTGCTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 5 0.16
30 23 0.72
31 4 0.12
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTCTTTCTTTCTTTCTCCTCTCTTCTTCC
Found at i:17998285 original size:17 final size:16
Alignment explanation
Indices: 17998236--17998287 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 16
17998226 GTTCAACAAA
17998236 CTAACTTCTTTAACAG
1 CTAACTTCTTTAACAG
17998252 ----CTT-TTTAACAG
1 CTAACTTCTTTAACAG
17998263 CTAACTTCTTTAACAG
1 CTAACTTCTTTAACAG
17998279 TCTAACTTC
1 -CTAACTTC
17998288 ACAACTGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
11 8 0.27
12 3 0.10
15 3 0.10
16 8 0.27
17 8 0.27
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (16 bp):
CTAACTTCTTTAACAG
Found at i:18009359 original size:16 final size:17
Alignment explanation
Indices: 18009331--18009368 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
18009321 GTCTTTTTAA
*
18009331 ATTTTATTTGATTTTTT
1 ATTTTATTTGATTTGTT
18009348 ATTTTA-TTGATTTGTT
1 ATTTTATTTGATTTGTT
18009364 ATTTT
1 ATTTT
18009369 CGAAACCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (17 bp):
ATTTTATTTGATTTGTT
Found at i:18011325 original size:3 final size:3
Alignment explanation
Indices: 18011306--18011355 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
18011296 AATTTATTTC
* * * *
18011306 ATA AT- ATA ATA ACA ATA ATA TTA ATA ATG ACA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
18011352 ATA A
1 ATA A
18011356 ATATCATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 33 0.89
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:18012577 original size:34 final size:34
Alignment explanation
Indices: 18012530--18012604 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
18012520 TGGGAAAACG
* * *
18012530 TATAAATATTATG-AAATATAAACGTGTATATATA
1 TATAAAAACTATGAAAATA-AAACATGTATATATA
*
18012564 TATAAAAACTATGAAAATAAAATATGTATATATA
1 TATAAAAACTATGAAAATAAAACATGTATATATA
*
18012598 TTTAAAA
1 TATAAAA
18012605 CGTTTAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 30 0.86
35 5 0.14
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.36
Consensus pattern (34 bp):
TATAAAAACTATGAAAATAAAACATGTATATATA
Found at i:18012684 original size:21 final size:19
Alignment explanation
Indices: 18012660--18012719 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
18012650 TATATGTAAG
*
18012660 TATAATGATAATAACATATAA
1 TATAATAATAATAA-A-ATAA
18012681 TATAATAATAATAAAATAA
1 TATAATAATAATAAAATAA
* *
18012700 TAACAATATTAATAAAATAA
1 T-ATAATAATAATAAAATAA
18012720 ATTAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 5 0.14
20 17 0.49
21 13 0.37
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (19 bp):
TATAATAATAATAAAATAA
Found at i:18012688 original size:3 final size:3
Alignment explanation
Indices: 18012661--18012719 Score: 52
Period size: 3 Copynumber: 20.3 Consensus size: 3
18012651 ATATGTAAGT
* * *
18012661 ATA ATG ATA ATA ACA TATA AT- ATA ATA ATA ATA A-A ATA ATA ACA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
18012705 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
18012720 ATTAAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
2 6 0.14
3 36 0.82
4 2 0.05
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:18012700 original size:29 final size:25
Alignment explanation
Indices: 18012667--18012720 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 25
18012657 AAGTATAATG
18012667 ATAATAACATATAATATAATAATAATAAA
1 ATAATAACA-AT-AT-TAATAA-AATAAA
18012696 ATAATAACAATATTAATAAAATAAA
1 ATAATAACAATATTAATAAAATAAA
18012721 TTAAAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 6 0.24
26 6 0.24
27 2 0.08
28 2 0.08
29 9 0.36
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (25 bp):
ATAATAACAATATTAATAAAATAAA
Found at i:18014481 original size:100 final size:100
Alignment explanation
Indices: 18014356--18014547 Score: 294
Period size: 100 Copynumber: 1.9 Consensus size: 100
18014346 CTCAACTGCA
* * *
18014356 ATGTCGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTATTCCATTGCACCACTAGGGAAGTAA
1 ATGTCGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTATTCCACTACACCACCAGGGAAGTAA
* *
18014421 GATCTGCCGTTGTGGCTTTAATCTTTTTAATTGAT
66 GATCCGCCGTTGTGGCTTCAATCTTTTTAATTGAT
** * **
18014456 ATGTCGGGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAA
1 ATGTCGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTATTCCACTACACCACCAGGGAAGTAA
18014521 GATCCGCCGTTGTGGCTTCAATCTTTT
66 GATCCGCCGTTGTGGCTTCAATCTTTT
18014548 CCACTGTAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (100 bp):
ATGTCGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTATTCCACTACACCACCAGGGAAGTAA
GATCCGCCGTTGTGGCTTCAATCTTTTTAATTGAT
Found at i:18014550 original size:50 final size:50
Alignment explanation
Indices: 18014370--18014552 Score: 134
Period size: 50 Copynumber: 3.7 Consensus size: 50
18014360 CGGGGAAACC
* * * * ** *
18014370 AGATCCACCGTCGTAGCTTCAATCTATTCCATTGCACCACTAGGGAAGTA
1 AGATCCGCCGTCGTAGCTTCAATCTTTTCCACTACACTGCCAGGGAAGTA
* * * * ** * * * * ***
18014420 AGATCTGCCGTTGTGGCTTTAATCTTTTTAATTGATA-TGTCGGGGAAACC
1 AGATCCGCCGTCGTAGCTTCAATCTTTTCCACT-ACACTGCCAGGGAAGTA
* *
18014470 AGATCTGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTA
1 AGATCCGCCGTCGTAGCTTCAATCTTTTCCACTACACTGCCAGGGAAGTA
* *
18014520 AGATCCGCCGTTGTGGCTTCAATCTTTTCCACT
1 AGATCCGCCGTCGTAGCTTCAATCTTTTCCACT
18014553 GTAATGCCAA
Statistics
Matches: 96, Mismatches: 35, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
49 2 0.02
50 93 0.97
51 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (50 bp):
AGATCCGCCGTCGTAGCTTCAATCTTTTCCACTACACTGCCAGGGAAGTA
Found at i:18014561 original size:50 final size:49
Alignment explanation
Indices: 18014411--18014561 Score: 142
Period size: 50 Copynumber: 3.0 Consensus size: 49
18014401 TTGCACCACT
* ** * *
18014411 AGGGAAGTAAGATCTGCCGTTGTGGCTTTAATCTTTTTAATTGATATGTC
1 AGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTCCACTGA-ATGCC
* *** * * *
18014461 GGGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCACT-ACACTGCC
1 AGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTCCACTGA-A-TGCC
*
18014511 AGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTCCACTGTAATGCC
1 AGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTCCACTG-AATGCC
18014561 A
1 A
18014562 AAGAGGTAGG
Statistics
Matches: 77, Mismatches: 21, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
49 2 0.03
50 73 0.95
51 1 0.01
52 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (49 bp):
AGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTCCACTGAATGCC
Found at i:18027019 original size:3 final size:3
Alignment explanation
Indices: 18026997--18027053 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
18026987 ATATGTAAGT
* *
18026997 ATA ATG ATA ATA ACA TATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
18027042 TTA ATA A-A ATA A
1 ATA ATA ATA ATA A
18027054 ATTAAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:18027033 original size:17 final size:17
Alignment explanation
Indices: 18026996--18027053 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 17
18026986 TATATGTAAG
* *
18026996 TATAATGATAATAA-CA
1 TATAATAATAATAATAA
18027012 TATAATAATAATAATAA
1 TATAATAATAATAATAA
*
18027029 TATAATAATAATATTAA
1 TATAATAATAATAATAA
*
18027046 TAAAATAA
1 TATAATAA
18027054 ATTAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 13 0.35
17 24 0.65
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
TATAATAATAATAATAA
Found at i:18027035 original size:14 final size:14
Alignment explanation
Indices: 18027016--18027053 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
18027006 ATAACATATA
18027016 ATAATAATAATAAT
1 ATAATAATAATAAT
18027030 ATAATAATAAT-AT
1 ATAATAATAATAAT
18027043 -TAATAA-AATAA
1 ATAATAATAATAA
18027054 ATTAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.13
12 7 0.30
13 2 0.09
14 11 0.48
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:18028454 original size:22 final size:22
Alignment explanation
Indices: 18028426--18028467 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18028416 AAATTATATA
18028426 AACTTATAAAAACTATAAAATT
1 AACTTATAAAAACTATAAAATT
* *
18028448 AACTTATAAATATTATAAAA
1 AACTTATAAAAACTATAAAA
18028468 AAGTTATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
AACTTATAAAAACTATAAAATT
Found at i:18028509 original size:19 final size:19
Alignment explanation
Indices: 18028405--18028637 Score: 98
Period size: 19 Copynumber: 11.7 Consensus size: 19
18028395 ATATATTAAG
*
18028405 AAAAATTATTAAAATTATA
1 AAAAATTATAAAAATTATA
* * *
18028424 TAAACTTATAAAAACTATA
1 AAAAATTATAAAAATTATA
*
18028443 AAATTAACTTATAAATATTATA
1 AAA--AA-TTATAAAAATTATA
*
18028465 AAAAAGTTAT--AAATTCCTTA
1 AAAAA-TTATAAAAATT--ATA
* *
18028485 ATAAATTCTAAAAATTATA
1 AAAAATTATAAAAATTATA
18028504 AAAAATTAT-AAAATTAATA
1 AAAAATTATAAAAATT-ATA
* *
18028523 AAAACA-TATTTAAAATAATA
1 AAAA-ATTA-TAAAAATTATA
* **
18028543 ATATTTTATAAAAATGTAT-
1 AAAAATTATAAAAAT-TATA
* * *
18028562 TAGAATTCTTAAAAATTATA
1 AAAAATT-ATAAAAATTATA
* *
18028582 AAAAAATATTAAAATTGATA
1 AAAAATTATAAAAATT-ATA
* ** *
18028602 TAAGCTTATAAAATTTATTTTA
1 AAAAATTATAAAA---ATTATA
18028624 AAAAATTATAAAAA
1 AAAAATTATAAAAA
18028638 AATATTAAAA
Statistics
Matches: 153, Mismatches: 42, Indels: 38
0.66 0.18 0.16
Matches are distributed among these distances:
18 10 0.07
19 57 0.37
20 45 0.29
21 11 0.07
22 27 0.18
23 3 0.02
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (19 bp):
AAAAATTATAAAAATTATA
Found at i:18028526 original size:10 final size:9
Alignment explanation
Indices: 18028405--18028585 Score: 62
Period size: 10 Copynumber: 18.6 Consensus size: 9
18028395 ATATATTAAG
18028405 AAAAATTAT
1 AAAAATTAT
*
18028414 TAAAATTAT
1 AAAAATTAT
*
18028423 ATAAACTTAT
1 A-AAAATTAT
*
18028433 AAAAACTAT
1 AAAAATTAT
18028442 AAAATTAACTTAT
1 -AAA--AA-TTAT
*
18028455 AAATATTAT
1 AAAAATTAT
18028464 AAAAAAGTTAT
1 -AAAAA-TTAT
*
18028475 --AAATTCCTT
1 AAAAATT--AT
*
18028484 AATAAATTCT
1 AA-AAATTAT
18028494 AAAAATTAT
1 AAAAATTAT
18028503 AAAAAATTAT
1 -AAAAATTAT
18028513 -AAAATTAAT
1 AAAAATT-AT
*
18028522 AAAAACATATT
1 AAAAA-TTA-T
* *
18028533 TAAAATAAT
1 AAAAATTAT
**
18028542 AATATTTTAT
1 AA-AAATTAT
18028552 AAAAATGTAT
1 AAAAAT-TAT
* * *
18028562 TAGAATTCTT
1 AAAAATT-AT
18028572 AAAAATTAT
1 AAAAATTAT
18028581 AAAAA
1 AAAAA
18028586 AATATTAAAA
Statistics
Matches: 125, Mismatches: 27, Indels: 40
0.65 0.14 0.21
Matches are distributed among these distances:
7 2 0.02
8 9 0.07
9 38 0.30
10 53 0.42
11 10 0.08
12 10 0.08
13 3 0.02
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (9 bp):
AAAAATTAT
Found at i:18028611 original size:30 final size:30
Alignment explanation
Indices: 18028577--18028666 Score: 88
Period size: 30 Copynumber: 3.3 Consensus size: 30
18028567 TTCTTAAAAA
18028577 TTATAAAAAAATATTAAAATTGATATAAGC
1 TTATAAAAAAATATTAAAATTGATATAAGC
* * **
18028607 TTAT---AAAAT-TT---ATT-TTAAAAAA
1 TTATAAAAAAATATTAAAATTGATATAAGC
18028629 TTATAAAAAAATATTAAAATTGATATAAGC
1 TTATAAAAAAATATTAAAATTGATATAAGC
18028659 TTATAAAA
1 TTATAAAA
18028667 TTTATTTTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
22 8 0.18
23 3 0.07
25 5 0.11
26 4 0.09
27 5 0.11
29 3 0.07
30 16 0.36
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (30 bp):
TTATAAAAAAATATTAAAATTGATATAAGC
Found at i:18028635 original size:52 final size:52
Alignment explanation
Indices: 18028572--18028688 Score: 234
Period size: 52 Copynumber: 2.2 Consensus size: 52
18028562 TAGAATTCTT
18028572 AAAAATTATAAAAAAATATTAAAATTGATATAAGCTTATAAAATTTATTTTA
1 AAAAATTATAAAAAAATATTAAAATTGATATAAGCTTATAAAATTTATTTTA
18028624 AAAAATTATAAAAAAATATTAAAATTGATATAAGCTTATAAAATTTATTTTA
1 AAAAATTATAAAAAAATATTAAAATTGATATAAGCTTATAAAATTTATTTTA
18028676 AAAAATTATAAAA
1 AAAAATTATAAAA
18028689 GCTTAAATTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (52 bp):
AAAAATTATAAAAAAATATTAAAATTGATATAAGCTTATAAAATTTATTTTA
Found at i:18032524 original size:84 final size:84
Alignment explanation
Indices: 18032391--18032548 Score: 235
Period size: 84 Copynumber: 1.9 Consensus size: 84
18032381 CGCCTTTGTT
* * *
18032391 TGGAAACAAAACAATATCGAATAAAATCTTGTTAAACGGCGGGAATAAATCCCAAAACAGATTTT
1 TGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACGGCGGGAATAAATCCCAAAACAAATTTT
18032456 ATTTAATTTAATTCTAATC
66 ATTTAATTTAATTCTAATC
* * * * * *
18032475 TGGAAACGAAATAAAATCAAATAAAATCTTGTTAAATGGCTGGAGTAAATCCCAAAATAAATTTT
1 TGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACGGCGGGAATAAATCCCAAAACAAATTTT
18032540 ATTTAATTT
66 ATTTAATTT
18032549 TAGTTTCTCG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 65 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (84 bp):
TGGAAACAAAACAAAATCAAATAAAATCTTGTTAAACGGCGGGAATAAATCCCAAAACAAATTTT
ATTTAATTTAATTCTAATC
Found at i:18032717 original size:87 final size:84
Alignment explanation
Indices: 18032603--18032801 Score: 206
Period size: 85 Copynumber: 2.3 Consensus size: 84
18032593 TTGAATGACA
** * * *
18032603 GGAATAAATCCCAAAGCATATTTTATTTTAA-TTTAA-TACTCGTTTTGGAAATAAAATTAAAAT
1 GGAATAAATCCCAAA-CGGATTTTATTTTAACTTTAATTACCCG-TTT-GAAA-AAAATAAAAAG
* *
18032666 TGGAATAAAATTCATTGAACGGC
62 TGGAATAAAATCCATTAAACGGC
* * *
18032689 GAGAATAAATCCCTAAACGGATTATA-TTTAACTTTAATTTCCCGTTTGAAAATAATAAAAAGTG
1 G-GAATAAATCCC-AAACGGATTTTATTTTAACTTTAATTACCCGTTTGAAAAAAATAAAAAGTG
*
18032753 GAATAAAATCCATTAAATGGC
64 GAATAAAATCCATTAAACGGC
*
18032774 GGAATAAATCTCGAAACGGATTTTATTT
1 GGAATAAATC-CCAAACGGATTTTATTT
18032802 ACTTTTAATT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
84 20 0.21
85 32 0.34
86 10 0.11
87 25 0.27
88 7 0.07
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.33
Consensus pattern (84 bp):
GGAATAAATCCCAAACGGATTTTATTTTAACTTTAATTACCCGTTTGAAAAAAATAAAAAGTGGA
ATAAAATCCATTAAACGGC
Found at i:18035616 original size:33 final size:33
Alignment explanation
Indices: 18035579--18035719 Score: 86
Period size: 33 Copynumber: 4.2 Consensus size: 33
18035569 ATAGCTAGGC
18035579 TATGGCATTCTGATGATAAGACCATAACTGGGT
1 TATGGCATTCTGATGATAAGACCATAACTGGGT
* * ** *** * *
18035612 TATGGCACTATGAACATAAGACCATGGTTAGAT
1 TATGGCATTCTGATGATAAGACCATAACTGGGT
* * * * * *
18035645 CATGGAAGTGTTTATATG-TAAGACCATAGCTGGGC
1 TATGGCA-T-TCT-GATGATAAGACCATAACTGGGT
* * *
18035680 TATGGTATTCTGATGATAATACCATAATTGGGT
1 TATGGCATTCTGATGATAAGACCATAACTGGGT
18035713 TATGGCA
1 TATGGCA
18035720 CTACGAATGT
Statistics
Matches: 74, Mismatches: 30, Indels: 8
0.66 0.27 0.07
Matches are distributed among these distances:
32 3 0.04
33 50 0.68
34 1 0.01
35 19 0.26
36 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (33 bp):
TATGGCATTCTGATGATAAGACCATAACTGGGT
Found at i:18035667 original size:101 final size:101
Alignment explanation
Indices: 18035492--18035722 Score: 365
Period size: 101 Copynumber: 2.3 Consensus size: 101
18035482 TGAATTGAAG
* * *
18035492 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGATTGGACTATGGTAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGACCATGATTAGACTATGGAAGTGTTT
*
18035557 ATATGTAAGAGCATAGCTAGGCTATGGCATTCTGAT
66 ATATGTAAGACCATAGCTAGGCTATGGCATTCTGAT
*
18035593 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGACCATGGTTAGA-TCATGGAAGTGTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGACCATGATTAGACT-ATGGAAGTGTT
* *
18035657 TATATGTAAGACCATAGCTGGGCTATGGTATTCTGAT
65 TATATGTAAGACCATAGCTAGGCTATGGCATTCTGAT
* *
18035694 GATAATACCATAATTGGGTTATGGCACTA
1 GATAAGACCATAACTGGGTTATGGCACTA
18035723 CGAATGTAAA
Statistics
Matches: 120, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
100 1 0.01
101 119 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGACCATGATTAGACTATGGAAGTGTTT
ATATGTAAGACCATAGCTAGGCTATGGCATTCTGAT
Found at i:18041691 original size:19 final size:20
Alignment explanation
Indices: 18041663--18041701 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
18041653 ATAGCGTACC
18041663 ATTTTGGTAT-TTATTTTTT
1 ATTTTGGTATCTTATTTTTT
* *
18041682 ATTTTTGTATCTTCTTTTTT
1 ATTTTGGTATCTTATTTTTT
18041702 TTTCTTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (20 bp):
ATTTTGGTATCTTATTTTTT
Found at i:18044514 original size:41 final size:41
Alignment explanation
Indices: 18044446--18044695 Score: 197
Period size: 41 Copynumber: 6.2 Consensus size: 41
18044436 TGGACTTTCG
* * *
18044446 GGGATTTAGTGGCGTATTT-TAGGAAGCGCCGCTAATGCTCA
1 GGGATTTAGCGGCGT-TTTCGAGAAAGCGCCGCTAATGCTCA
* * * * *
18044487 GGGATTTAGCGGCATTTTCGAGAAAGCGCTGCTAAAGATTA
1 GGGATTTAGCGGCGTTTTCGAGAAAGCGCCGCTAATGCTCA
** * ** * *
18044528 GGCTTTTTGCGGCGTTTTTTAGAAAGCGACGCTAATGCTTA
1 GGGATTTAGCGGCGTTTTCGAGAAAGCGCCGCTAATGCTCA
* * * *
18044569 GGGCTTTAGC-G-ATTTT-GAGGAAGCGTCGCTAATGCT-A
1 GGGATTTAGCGGCGTTTTCGAGAAAGCGCCGCTAATGCTCA
* * * *
18044606 GGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTATTGCTCA
1 GGGATTTAGCGGCGTTTTCGAGAAAGCGCCGCTAATGCTCA
* * * *
18044647 AGGATTTAGTGGCGTTTTCTA-AAATGCGCCGCTAATACTCA
1 GGGATTTAGCGGCGTTTTCGAGAAA-GCGCCGCTAATGCTCA
18044688 GGGATTTA
1 GGGATTTA
18044696 AAATAATTTA
Statistics
Matches: 164, Mismatches: 39, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
37 11 0.07
38 18 0.11
39 8 0.05
40 23 0.14
41 104 0.63
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (41 bp):
GGGATTTAGCGGCGTTTTCGAGAAAGCGCCGCTAATGCTCA
Found at i:18044639 original size:78 final size:82
Alignment explanation
Indices: 18044450--18044665 Score: 223
Period size: 82 Copynumber: 2.7 Consensus size: 82
18044440 CTTTCGGGGA
*
18044450 TTTAGTGGCGTATTTTAGG-AAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGC
1 TTTAGCGGCGT-TTTTAGGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGC
*
18044514 GCTGCTAAAGATTAGGCT
65 GCTGCTAAAGACTAGGCT
* * * * *
18044532 TTTTGCGGCGTTTTTTA-GAAAGCGACGCTAATGCTTAGGGCTTTAGC-G-ATTTT-GAGGAAGC
1 TTTAGCGGCG-TTTTTAGGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGC
*
18044593 G-TCGCTAATG-CTAGGGC-
65 GCT-GCTAAAGACTA-GGCT
* * * * *
18044610 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTATTGCTCAAGGATTTAGTGGCGTTTTC
1 TTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTC
18044666 TAAAATGCGC
Statistics
Matches: 109, Mismatches: 17, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
77 5 0.05
78 36 0.33
79 18 0.17
80 9 0.08
81 2 0.02
82 38 0.35
83 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTAGGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGCG
CTGCTAAAGACTAGGCT
Found at i:18044680 original size:119 final size:119
Alignment explanation
Indices: 18044461--18044682 Score: 261
Period size: 119 Copynumber: 1.9 Consensus size: 119
18044451 TTAGTGGCGT
*
18044461 ATTTTAGGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGCGCTGCTAAAGAT
1 ATTTTAGGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGCGCCGCTAAAGAT
* * * *
18044526 TAGGCTTTTTGCGGCGTTTTTTAGAAAGCGACGCTAATGCTTAGGGCTTTAGCG
66 AAGGCATTTAGCGGCGTTTTCTAGAAAGCGACGCTAATGCTTAGGGCTTTAGCG
* * * * * ** *
18044580 ATTTTGAGGAAGCGTCGCTAATGCT-AGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTATTGC
1 ATTTT-AGGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGCGCCGCTAAAGA
* *
18044644 TCAAGG-ATTTAGTGGCGTTTTCTA-AAATGCGCCGCTAAT
65 T-AAGGCATTTAGCGGCGTTTTCTAGAAA-GCGACGCTAAT
18044683 ACTCAGGGAT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
118 3 0.04
119 61 0.72
120 21 0.25
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (119 bp):
ATTTTAGGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTTCGAGAAAGCGCCGCTAAAGAT
AAGGCATTTAGCGGCGTTTTCTAGAAAGCGACGCTAATGCTTAGGGCTTTAGCG
Found at i:18044889 original size:14 final size:14
Alignment explanation
Indices: 18044870--18044918 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
18044860 TATTACTATA
*
18044870 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
18044884 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
18044898 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
18044912 GTTTAGG
1 GTTTAGG
18044919 TGTTACCATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:18045356 original size:15 final size:14
Alignment explanation
Indices: 18045335--18045383 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
18045325 CAAATTTTAA
18045335 GGTTTAGGGATTAT
1 GGTTTAGGGATTAT
18045349 GTGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
* *
18045364 GGATTATGGATTAT
1 GGTTTAGGGATTAT
18045378 GGTTTA
1 GGTTTA
18045384 AGGGTTGGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
14 17 0.55
15 14 0.45
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:18045426 original size:22 final size:22
Alignment explanation
Indices: 18045401--18045442 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18045391 GGGTTTAAAA
*
18045401 TTTAGGGGTTAAGGGTTATGGG
1 TTTAGGGATTAAGGGTTATGGG
*
18045423 TTTAGGGATTAAGGTTTATG
1 TTTAGGGATTAAGGGTTATG
18045443 ATTTACGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (22 bp):
TTTAGGGATTAAGGGTTATGGG
Found at i:18049634 original size:43 final size:43
Alignment explanation
Indices: 18049557--18049800 Score: 232
Period size: 43 Copynumber: 5.7 Consensus size: 43
18049547 TAAATATTTT
* *
18049557 TAAAGGTCATGTT-TTTAGCGGC-TTTTTGTAGAAAAAGCGACGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTATG--GAAAAAGCGACGC
* *
18049600 TAAAGGTCTTGTTCTTTAGCGTCGTTTATGGAAAAAGC-ATCGT
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTATGGAAAAAGCGA-CGC
* * * *
18049643 TAAAGGTCATATTCTATAGAGGCGTTTATGGGAAAAATGC--CGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTAT-GGAAAAA-GCGACGC
* * * *
18049686 TAAAGGTCATT-ATCTTTAGCGGCGTTTGTGGAAGAAGCGTCGC
1 TAAAGGTC-TTGTTCTTTAGCGGCGTTTATGGAAAAAGCGACGC
* * *
18049729 TAAAGGTCTTGTTCTTTAGCGGCGTTT-TTGAGAAAGCGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTATGGAAAAAGCGACGC
* *
18049771 GAAAGGTCTTGTTCTATAGCGGCGTTTATG
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTATG
18049801 TCTAAAAATG
Statistics
Matches: 167, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
41 2 0.01
42 45 0.27
43 97 0.58
44 16 0.10
45 7 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TAAAGGTCTTGTTCTTTAGCGGCGTTTATGGAAAAAGCGACGC
Found at i:18049808 original size:129 final size:129
Alignment explanation
Indices: 18049557--18049819 Score: 316
Period size: 129 Copynumber: 2.0 Consensus size: 129
18049547 TAAATATTTT
* *
18049557 TAAAGGTCATGTTTTTAGCGGCTTTTTGTAGAAAAAGCGACGCTAAAGGTCTTGTTCTTTAGCGT
1 TAAAGGTCATGTTTTTAGCGGCTGTTTGTAGAAAAAGCGACGCTAAAGGTCTTGTTCTTTAGCGG
* ** *
18049622 CGTTTATGGAAAAAGCATCGTTAAAGGTCATATTCTATAGAGGCGTTTATGGGAAAAATGCCGC
66 CGTTTATGGAAAAAGCACCGCGAAAGGTCATATTCTATAGAGGCGTTTATGCGAAAAATGCCGC
* * *
18049686 TAAAGGTCAT-TATCTTTAGCGGC-GTTTGTGGAAGAAGCGTCGCTAAAGGTCTTGTTCTTTAGC
1 TAAAGGTCATGT-T-TTTAGCGGCTGTTTGTAGAAAAAGCGACGCTAAAGGTCTTGTTCTTTAGC
* * * * * * * *
18049749 GGCGTTT-TTGAGAAAGCGCCGCGAAAGGTCTTGTTCTATAGCGGCGTTTATGTCTAAAAATGTC
64 GGCGTTTATGGAAAAAGCACCGCGAAAGGTCATATTCTATAGAGGCGTTTATG-CGAAAAATGCC
18049813 GC
128 GC
*
18049815 AAAAG
1 TAAAG
18049820 TTAGCGGCGT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
128 37 0.33
129 67 0.59
130 9 0.08
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (129 bp):
TAAAGGTCATGTTTTTAGCGGCTGTTTGTAGAAAAAGCGACGCTAAAGGTCTTGTTCTTTAGCGG
CGTTTATGGAAAAAGCACCGCGAAAGGTCATATTCTATAGAGGCGTTTATGCGAAAAATGCCGC
Found at i:18051391 original size:33 final size:33
Alignment explanation
Indices: 18051354--18051465 Score: 111
Period size: 33 Copynumber: 3.5 Consensus size: 33
18051344 CGCAGTATAG
* * * *
18051354 CACTCCTCTCGGCTCGTATACACCGCATTATTC
1 CACTCCTCCCGGCTCGTATCCACCGCAATACTC
*** *
18051387 CACTCCTCTTTGCTCGTATCCACTGCAATACT-
1 CACTCCTCCCGGCTCGTATCCACCGCAATACTC
* *
18051419 C-CTCCTCCCGGATCGTATCCACCGCAGTACTC
1 CACTCCTCCCGGCTCGTATCCACCGCAATACTC
*
18051451 CACTTCTCCCGGCTC
1 CACTCCTCCCGGCTC
18051466 AAGTTCATCG
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
31 24 0.38
32 2 0.03
33 37 0.59
ACGTcount: A:0.16, C:0.43, G:0.12, T:0.29
Consensus pattern (33 bp):
CACTCCTCCCGGCTCGTATCCACCGCAATACTC
Found at i:18051835 original size:48 final size:48
Alignment explanation
Indices: 18051764--18052086 Score: 472
Period size: 48 Copynumber: 6.7 Consensus size: 48
18051754 ACTTTGTAAT
* *
18051764 ATGAATAAACTTTGTAATATAAATTAGATACATTACAATATTAAAATG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
* * *
18051812 ATGAACACAA-TTTGCAATATAAATTAGATACATTATAATATTAAAATG
1 ATGAACA-AACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
* *
18051860 ATGAACAAAATTTGTAATATAAATTAGATACATTACAACATTAAAACG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
* * *
18051908 AGGAACAAACTTTGTAATATAAATTAAATACATTACAACATTAAAACG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
*
18051956 A-GAAACAAACTTTGTAATATAAATTAGATATATTACAACATTAAAATG
1 ATG-AACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
* *
18052004 AGGAACAAACTTTGTAATATAAATTAGATGCATTACAACATTAAAATG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
*
18052052 AAT-AACAAACTTTGTAATATAAATTAGGTACATTA
1 -ATGAACAAACTTTGTAATATAAATTAGATACATTA
18052087 GCTCAATTCC
Statistics
Matches: 252, Mismatches: 18, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
47 3 0.01
48 245 0.97
49 4 0.02
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.31
Consensus pattern (48 bp):
ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAATG
Found at i:18056071 original size:27 final size:27
Alignment explanation
Indices: 18056004--18056072 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
18055994 AAATTTAATA
* * *
18056004 CACTGGTGCCGCCTATCAGATAGGGGT
1 CACTAGTGCCGCCTATCAGATAAGGGC
* *
18056031 CACCAATGCCGCCTATCAGATAAGGGC
1 CACTAGTGCCGCCTATCAGATAAGGGC
*
18056058 CACTAGTGCTGCCTA
1 CACTAGTGCCGCCTA
18056073 CCACACCCTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (27 bp):
CACTAGTGCCGCCTATCAGATAAGGGC
Done.