Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 78 of 213
Found at i:21351943 original size:96 final size:94
Alignment explanation
Indices: 21351773--21352005 Score: 380
Period size: 96 Copynumber: 2.4 Consensus size: 94
21351763 GCCCTTCGGG
*
21351773 ACTTATCACATTCATCACATCGGCCATTA-GCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
21351837 ACATCGGCCATTAGGCCCTATCACATATATATAC
63 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
21351871 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
21351936 TCGGCCATTAGGCCTTATCACATATATAC
66 TCGGCCATTAGGCCCTATCACATATATAC
21351965 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATACACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACAT
21352006 CACATCGGCC
Statistics
Matches: 131, Mismatches: 2, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
93 15 0.11
94 33 0.25
96 46 0.35
97 24 0.18
98 13 0.10
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (94 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCCTATCACATATATAC
Found at i:21352008 original size:74 final size:74
Alignment explanation
Indices: 21351929--21352083 Score: 278
Period size: 74 Copynumber: 2.1 Consensus size: 74
21351919 CTTTCACATT
*
21351929 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAG
1 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
21351993 GCCTTATACA
66 GCCTTAT-CA
21352003 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
21352068 GCCTTATCA
66 GCCTTATCA
21352077 CAT-ACAT
1 CATCACAT
21352084 ACACTTTCAC
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
73 4 0.05
74 60 0.76
75 15 0.19
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (74 bp):
CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCA
Found at i:21352016 original size:121 final size:121
Alignment explanation
Indices: 21351882--21352126 Score: 447
Period size: 121 Copynumber: 2.0 Consensus size: 121
21351872 CTTTCACATT
*
21351882 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
21351947 GCCTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTTATACA
66 GCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTAT-CA
21352003 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
21352068 GCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCA
66 GCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCA
21352124 CAT
1 CAT
21352127 ATATACACTT
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
121 106 0.88
122 14 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (121 bp):
CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCA
Found at i:21352029 original size:22 final size:22
Alignment explanation
Indices: 21352004--21352126 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
21351994 CCTTATACAC
21352004 ATCACATCGGCCATTAGGCATT
1 ATCACATCGGCCATTAGGCATT
**** ***
21352026 ATCACATATATACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCATT
*
21352050 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCATT
*** ***
21352073 ATCACATACATACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCATT
21352097 CATCACATCGGCCATTAGGCATT
1 -ATCACATCGGCCATTAGGCATT
21352120 ATCACAT
1 ATCACAT
21352127 ATATACACTT
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCATT
Found at i:21352031 original size:27 final size:27
Alignment explanation
Indices: 21351976--21352032 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
21351966 CTTTCACATT
*
21351976 CATCACATCGCCATTAGGCCTTATACA
1 CATCACATCGCCATTAGGCATTATACA
21352003 CATCACATCGGCCATTAGGCATTAT-CA
1 CATCACATC-GCCATTAGGCATTATACA
21352030 CAT
1 CAT
21352033 ATATACACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 14 0.50
28 14 0.50
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.26
Consensus pattern (27 bp):
CATCACATCGCCATTAGGCATTATACA
Found at i:21352088 original size:168 final size:169
Alignment explanation
Indices: 21351833--21352173 Score: 605
Period size: 168 Copynumber: 2.0 Consensus size: 169
21351823 CTTTCACATT
*
21351833 CATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
1 CATCACATCGGCCATTAGGCACTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATT
* *
21351898 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
65 AGGCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATAT
21351963 ACACTTTCACATTCATCACATC-GCCATTAGGCCTTATACA
130 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-CA
*
21352003 CATCACATCGGCCATTAGGCATTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTA
1 CATCACATCGGCCATTAGGCACTATCACAATATATACACTTTCACATTCATCACATCGGCCATTA
21352067 GGCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATA
66 GGCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATA
*
21352132 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
21352171 CAT
1 CAT
21352174 ATATACACTT
Statistics
Matches: 165, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
168 125 0.76
169 14 0.08
170 26 0.16
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (169 bp):
CATCACATCGGCCATTAGGCACTATCACAATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATACATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:21352211 original size:47 final size:47
Alignment explanation
Indices: 21352003--21352211 Score: 382
Period size: 47 Copynumber: 4.4 Consensus size: 47
21351993 GCCTTATACA
*
21352003 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
*
21352050 CATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
*
21352097 CATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
*
21352144 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
21352191 CATCACATCGGCCATTAGGCC
1 CATCACATCGGCCATTAGGCC
21352212 ATACTATCAT
Statistics
Matches: 155, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 155 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:21355859 original size:39 final size:39
Alignment explanation
Indices: 21355718--21356006 Score: 290
Period size: 39 Copynumber: 7.5 Consensus size: 39
21355708 AGCATGATTA
* * *
21355718 CTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCT
1 CTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCT
* ** *
21355758 CTTTGGGTTTAGCACGGATA-ATCACTAGCACGAATGCT
1 CTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCT
*
21355796 -TTCGGAACTTAGCCC-GATACATCACTAGCACGAATGCT
1 CTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATGCT
* *
21355834 CCTCGGACTTAGCCCGGATATATCACTAGCATGAATGCT
1 CTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCT
* *
21355873 CTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCT
1 CTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCT
* * * *
21355912 CTTCGGACTTAG-CCGGATTTAGTAACTCGCAC-CATGC-
1 CTTCGGACTTAGCCCGGATATA-TCACTAGCACGAATGCT
* *
21355949 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AA-GC-
1 CTTCGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATGCT
21355988 CTTCGGGACTTAGCCCGGA
1 CTTC-GGACTTAGCCCGGA
21356007 CATCATTCGA
Statistics
Matches: 211, Mismatches: 28, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
37 15 0.07
38 65 0.31
39 119 0.56
40 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCT
Found at i:21355977 original size:78 final size:76
Alignment explanation
Indices: 21355718--21355969 Score: 237
Period size: 77 Copynumber: 3.3 Consensus size: 76
21355708 AGCATGATTA
* * * * * ** *
21355718 CTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGTTTAGCACGGATA-ATCA
1 CTTC-GGACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGACTTAGC-CGGATATATAA
21355782 CTAGCA-CGAATGCT
63 CTAGCATC-AATGCT
* *
21355796 -TTCGGAACTTAGCCC-GATACATCACTAGCACGAATGCTCCTCGGACTTAGCCCGGATATATCA
1 CTTCGG-ACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGACTTAG-CCGGATATATAA
*
21355859 CTAGCATGAATGCT
63 CTAGCATCAATGCT
*
21355873 CTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCGGATTTAGTAAC
1 CTTCGGACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGACTTAGCCGGATATA-TAAC
* *
21355938 TCGCA-CCATGC-
64 TAGCATCAATGCT
*
21355949 CTTCGGATCTTAGTCCGGATA
1 CTTCGGA-CTTAGCCCGGATA
21355970 TGGTCACTTA
Statistics
Matches: 149, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
76 43 0.29
77 61 0.41
78 45 0.30
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (76 bp):
CTTCGGACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGACTTAGCCGGATATATAACTA
GCATCAATGCT
Found at i:21356345 original size:29 final size:29
Alignment explanation
Indices: 21356306--21356383 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 29
21356296 CTTAATAATC
*
21356306 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
21356336 AACTCGCACACTTAGTG-CATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
21356364 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
21356384 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 3 0.07
28 21 0.50
29 15 0.36
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:21356440 original size:39 final size:41
Alignment explanation
Indices: 21356365--21356460 Score: 171
Period size: 40 Copynumber: 2.4 Consensus size: 41
21356355 TGCATTTCAA
21356365 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACA-TAT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACATTAT
21356405 GCCCGCACACTTAGTGCCAA-CTCACAACCGTGAACATTAT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACATTAT
21356445 GCCCG-ACACTTAGTGC
1 GCCCGCACACTTAGTGC
21356461 TGAAAACCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
39 27 0.49
40 28 0.51
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.20
Consensus pattern (41 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACATTAT
Found at i:21367783 original size:17 final size:17
Alignment explanation
Indices: 21367761--21367793 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
21367751 ATAGAAAGTC
21367761 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
21367778 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
21367794 AAATCTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:21369615 original size:17 final size:17
Alignment explanation
Indices: 21369593--21369625 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21369583 TAGTTGTCAC
21369593 TTGAATTAAATTAATTG
1 TTGAATTAAATTAATTG
*
21369610 TTGAATTAATTTAATT
1 TTGAATTAAATTAATT
21369626 TGATAGACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
TTGAATTAAATTAATTG
Found at i:21370003 original size:133 final size:131
Alignment explanation
Indices: 21369688--21370098 Score: 576
Period size: 137 Copynumber: 3.0 Consensus size: 131
21369678 AACATAGATT
*
21369688 TAATTAATATATGAATTAGATTCATACAAAATATTAGTTGTATATATTTTACCAAATTTATTAAT
1 TAATTAATATATGAATT-GATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
* *
21369753 ATAAATAGTTATATTAATTAATTTCGATCAAAATATAAA-AACATGAAAATTAATATTCTTTTGG
65 ATAAATAGTTATATTAA-T--TTT-GGTCAAAATA-AAAGAA-ATGAGAATTAATATTCTTTTGG
21369817 AAAGAATA
124 AAAGAATA
*
21369825 TAATTAATATATGAATTTGATTCATACAAAATATTTAATTGTATATATTTTACCGAATTTATTAA
1 TAATTAATATATGAA-TTGATTCATACAAAATA-TTAATTGTATATATTTTACCAAATTTATTAA
*
21369890 TATAAAAAGTTATATTAATTTTGGTCAAAATAAAAGAAATGAGAATTAATATTCTTTTGGAAAGA
64 TATAAATAGTTATATTAATTTTGGTCAAAATAAAAGAAATGAGAATTAATATTCTTTTGGAAAGA
21369955 ATA
129 ATA
* *
21369958 TAATTAATATATGAATTGAGTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
1 TAATTAATATATGAATTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
* *
21370023 TAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAGATATG-GAAATTAATACTC-TTTGG
66 TAAATAG-T-TA-T-ATTAATTTTGGTC-AAA-ATAAAAGAAATGAG-AATTAATATTCTTTTGG
21370086 AAAGAATA
124 AAAGAATA
21370094 TAATT
1 TAATT
21370099 CATTTTTCTA
Statistics
Matches: 253, Mismatches: 11, Indels: 21
0.89 0.04 0.07
Matches are distributed among these distances:
131 37 0.15
132 17 0.07
133 49 0.19
134 12 0.05
135 16 0.06
136 22 0.09
137 52 0.21
138 48 0.19
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.41
Consensus pattern (131 bp):
TAATTAATATATGAATTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
TAAATAGTTATATTAATTTTGGTCAAAATAAAAGAAATGAGAATTAATATTCTTTTGGAAAGAAT
A
Found at i:21373320 original size:36 final size:37
Alignment explanation
Indices: 21373248--21373325 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
21373238 TTATTACGAA
* *
21373248 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
21373285 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
21373321 GTCTT
1 GTCTT
21373326 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:21373604 original size:47 final size:47
Alignment explanation
Indices: 21373444--21373819 Score: 581
Period size: 47 Copynumber: 7.7 Consensus size: 47
21373434 GCCCTTCGGG
*
21373444 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
21373494 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
21373543 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21373590 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21373637 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21373684 ACTTTCACATTCATCCACCTTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 AC--T----TTCA--CA--TTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21373741 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21373788 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
21373820 ATACTATCAT
Statistics
Matches: 311, Mismatches: 5, Indels: 23
0.92 0.01 0.07
Matches are distributed among these distances:
47 171 0.55
49 86 0.28
50 4 0.01
51 4 0.01
53 4 0.01
55 3 0.01
57 39 0.13
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:21373734 original size:57 final size:55
Alignment explanation
Indices: 21373644--21373802 Score: 226
Period size: 57 Copynumber: 3.0 Consensus size: 55
21373634 TACACTTTCA
21373644 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
*
21373699 CACCTTCATCACATCGGCCATTAGGCATTATCACATATATACAC--T----TTCA--
1 CA--TTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
*
21373748 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
21373803 ACATCGGCCA
Statistics
Matches: 91, Mismatches: 3, Indels: 20
0.80 0.03 0.18
Matches are distributed among these distances:
47 38 0.42
49 3 0.03
51 4 0.04
53 4 0.04
55 3 0.03
57 39 0.43
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (55 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
Found at i:21373756 original size:151 final size:143
Alignment explanation
Indices: 21373444--21373819 Score: 599
Period size: 151 Copynumber: 2.6 Consensus size: 143
21373434 GCCCTTCGGG
*
21373444 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
21373509 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
21373574 CTTATCACATATATAC
128 ATTATCACATATATAC
21373590 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
21373655 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCCACCTTCATCACATCGGCCAT
66 TCGGCCATTAGGCCCTATCACATATAT--A--TACAC-TT--T-CACATTCATCACATCGGCCAT
21373720 TAGGCATTATCACATATATAC
123 TAGGCATTATCACATATATAC
*
21373741 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
21373806 TCGGCCATTAGGCC
66 TCGGCCATTAGGCC
21373820 ATACTATCAT
Statistics
Matches: 216, Mismatches: 6, Indels: 11
0.93 0.03 0.05
Matches are distributed among these distances:
143 52 0.24
145 35 0.16
146 4 0.02
147 4 0.02
148 2 0.01
150 1 0.00
151 118 0.55
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (143 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCATT
ATCACATATATAC
Found at i:21373779 original size:104 final size:104
Alignment explanation
Indices: 21373599--21373802 Score: 390
Period size: 104 Copynumber: 2.0 Consensus size: 104
21373589 CACTTTCACA
*
21373599 TTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 TTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATT
21373664 AGGCCTTATCACATATATACACTTTCACATTCATCCACC
66 AGGCCTTATCACATATATACACTTTCACATTCATCCACC
*
21373703 TTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCTATT
1 TTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATT
21373768 AGGCCTTATCACATATATACACTTTCACATTCATC
66 AGGCCTTATCACATATATACACTTTCACATTCATC
21373803 ACATCGGCCA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 98 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (104 bp):
TTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATT
AGGCCTTATCACATATATACACTTTCACATTCATCCACC
Found at i:21377374 original size:40 final size:40
Alignment explanation
Indices: 21377344--21377644 Score: 349
Period size: 40 Copynumber: 7.5 Consensus size: 40
21377334 AGCATGATTA
* * *
21377344 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
21377384 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
21377424 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
21377464 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
21377504 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
21377544 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
21377585 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
21377625 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
21377645 CATCATTCGA
Statistics
Matches: 222, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.01
40 199 0.90
41 20 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:21377989 original size:29 final size:29
Alignment explanation
Indices: 21377950--21378028 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
21377940 CTTAATAATC
*
21377950 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
21377980 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
21378009 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
21378029 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:21378071 original size:43 final size:43
Alignment explanation
Indices: 21378010--21378112 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
21378000 TGCATTTCAA
21378010 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
21378053 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
21378096 GCCCGTACACTTAGTGC
1 GCCCGCACACTTAGTGC
21378113 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:21380038 original size:37 final size:37
Alignment explanation
Indices: 21379966--21380043 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
21379956 TATTACGAAA
* * * *
21379966 TCTTACCCGGACATAATCTCCATACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
21380003 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
21380040 TCTT
1 TCTT
21380044 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:21380321 original size:47 final size:47
Alignment explanation
Indices: 21380161--21380525 Score: 633
Period size: 47 Copynumber: 7.7 Consensus size: 47
21380151 GCCCTTCGGG
*
21380161 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
21380211 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
21380260 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21380307 ACTTTCACATTCATC-CATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21380353 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21380400 ACTGTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21380447 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21380494 ACTTTCACATTCATCACATCGGCTATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
21380526 ATACTATCAT
Statistics
Matches: 308, Mismatches: 6, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
46 46 0.15
47 175 0.57
49 83 0.27
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:21389775 original size:24 final size:22
Alignment explanation
Indices: 21389725--21389779 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
21389715 TCAATAAAAT
* *
21389725 CAATAAATCAAAACAACAAGAA
1 CAATAAATTAAAAAAACAAGAA
21389747 C--TAAATTAAAATAAACAAGAAA
1 CAATAAATTAAAA-AAACAAG-AA
21389769 CAATAAATTAA
1 CAATAAATTAA
21389780 GGCTAGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 9 0.33
21 6 0.22
22 4 0.15
24 8 0.30
ACGTcount: A:0.67, C:0.13, G:0.04, T:0.16
Consensus pattern (22 bp):
CAATAAATTAAAAAAACAAGAA
Found at i:21391428 original size:17 final size:19
Alignment explanation
Indices: 21391388--21391429 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
21391378 TTGATCTAAC
21391388 ATACAATGTGATATAAATT
1 ATACAATGTGATATAAATT
* *
21391407 TTACAAT-TTATAT-AATT
1 ATACAATGTGATATAAATT
21391424 ATACAA
1 ATACAA
21391430 ATACAACTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.45
18 5 0.25
19 6 0.30
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (19 bp):
ATACAATGTGATATAAATT
Found at i:21394955 original size:41 final size:41
Alignment explanation
Indices: 21394845--21395224 Score: 453
Period size: 41 Copynumber: 9.4 Consensus size: 41
21394835 ATTCGGTGGC
* * * * *
21394845 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCTGGG-
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* *
21394885 TTTAGCGGCATTTTTT-AAAAGCGCTGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* *
21394925 TTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21394966 TTTAGCTGCGTTTTTTAAAAAGCGCCTCTAATGCTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
** * * *
21395007 TTTAGCAACG-TTTTTAAAAAGCACCACTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * * *
21395047 TGTAGCGGCGTTTTTTTAAAAGAGCCGCTAATGGTCTGAGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
*
21395088 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
** * * * *
21395129 TTTA-CCACGTGTTTTAAAAAGAGTCGCTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21395169 TTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
21395210 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
21395225 GTTAAAGCGC
Statistics
Matches: 286, Mismatches: 50, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
39 20 0.07
40 94 0.33
41 172 0.60
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
Found at i:21395037 original size:81 final size:82
Alignment explanation
Indices: 21394845--21395224 Score: 453
Period size: 81 Copynumber: 4.7 Consensus size: 82
21394835 ATTCGGTGGC
* * * * * * *
21394845 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCTGGG-TTTAGCGGCATTTTTT-AAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGAG
*
21394908 CTGCTAATGGTCTGGGT
66 CCGCTAATGGTCTGGGT
* * * *
21394925 TTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGTTTTAGCTGCGTTTTTTAAAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGAG
* *
21394990 CCTCTAATGCTCTGGGT
66 CCGCTAATGGTCTGGGT
** * * * * *
21395007 TTTAGCAACG-TTTTTAAAAAGCACCACTAATGGTCTTGGTTGTAGCGGCGTTTTTTTAAAAGAG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGAG
*
21395071 CCGCTAATGGTCTGAGT
66 CCGCTAATGGTCTGGGT
* ** *
21395088 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGTTTTA-CCACGTGTTTTAAAAAGAG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGAG
* *
21395152 TCGCTAATGGTCTTGGT
66 CCGCTAATGGTCTGGGT
* * *
21395169 TTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTT
21395225 GTTAAAGCGC
Statistics
Matches: 251, Mismatches: 45, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
80 35 0.14
81 151 0.60
82 65 0.26
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGAG
CCGCTAATGGTCTGGGT
Found at i:21395233 original size:122 final size:122
Alignment explanation
Indices: 21394845--21395224 Score: 487
Period size: 122 Copynumber: 3.1 Consensus size: 122
21394835 ATTCGGTGGC
* * * * ** * * *
21394845 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCTGGG-TTTAGCGGCATTTTTTAAAAGCGC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTAAAAAGCAC
* * * * *
21394909 TGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGT
66 CGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
* *
21394966 TTTAGCTGCGTTTTTTAAAAAGCGCCTCTAATGCTCTGGGTTTTAGCAACGTTTTTAAAAAGCAC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTAAAAAGCAC
* * * *
21395031 CACTAATGGTCTTGGTTGTAGCGGCGTTTTTTTAAAAGAGCCGCTAATGGTCTGAGT
66 CGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
* * *
21395088 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGTTTTA-CCACGTGTTTTAAAAAG-A
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGT-TTTTAAAAAGCA
* * *
21395151 GTCGCTAATGGTCTTGGTTTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
65 -CCGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
21395210 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
21395225 GTTAAAGCGC
Statistics
Matches: 224, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
121 40 0.18
122 184 0.82
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (122 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTAAAAAGCAC
CGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
Found at i:21395995 original size:15 final size:15
Alignment explanation
Indices: 21395975--21396038 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 15
21395965 TGGGATTTAA
*
21395975 GGTTTAGGTGTTAGG
1 GGTTTAGGGGTTAGG
*
21395990 GGTTTAGGGGTTAGA
1 GGTTTAGGGGTTAGG
* *
21396005 CG-TTAGGGGTTAAG
1 GGTTTAGGGGTTAGG
* * *
21396019 AG-TTAGGGATTTGG
1 GGTTTAGGGGTTAGG
21396033 GGTTTA
1 GGTTTA
21396039 CGAATTCAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 21 0.55
15 17 0.45
ACGTcount: A:0.19, C:0.02, G:0.44, T:0.36
Consensus pattern (15 bp):
GGTTTAGGGGTTAGG
Found at i:21395995 original size:22 final size:22
Alignment explanation
Indices: 21395970--21396024 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
21395960 AGGGTTGGGA
* **
21395970 TTTAAGGTTTAGGTGTTAGGGG
1 TTTAAGGGTTAGACGTTAGGGG
*
21395992 TTTAGGGGTTAGACGTTAGGGG
1 TTTAAGGGTTAGACGTTAGGGG
*
21396014 -TTAAGAGTTAG
1 TTTAAGGGTTAG
21396025 GGATTTGGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.22, C:0.02, G:0.40, T:0.36
Consensus pattern (22 bp):
TTTAAGGGTTAGACGTTAGGGG
Found at i:21396012 original size:14 final size:14
Alignment explanation
Indices: 21395993--21396026 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
21395983 TGTTAGGGGT
21395993 TTAGGGGTT-AGACG
1 TTAGGGGTTAAGA-G
21396007 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
21396021 TTAGGG
1 TTAGGG
21396027 ATTTGGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.24, C:0.03, G:0.44, T:0.29
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:21396266 original size:322 final size:312
Alignment explanation
Indices: 21395599--21396445 Score: 990
Period size: 321 Copynumber: 2.7 Consensus size: 312
21395589 TTTTAGTGAG
* * *
21395599 TATATATCGATTAATTAGGGATTATGGATGA-GGATTATGGTTTAATTAAAGGTT-GGATTTAA-
1 TATATATAGATTAATTAGGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAG
* * * *
21395661 --T--GT-TTAGGGG-TTAAGGGTTAGACGTTAAAGGTTAATAGTTAGGGATTTAGGGTTTACAA
66 TTTAGGTGTTAGGGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGA
* * * *
21395720 ATTTAGGGGTC-AGGTTAGGGTTTTGAGATTAGATTATTTTTGTTTTATATTTTAAATATATTAT
131 ATTCA-GGGTCGA-GTTAGGGTTTTGGGTTTAGATTATTTTTTTTTTATA-TTT-AA-ATATT-T
* * *
21395784 TATATATGTAATTGTAATTTAACATAATAATAAAATTGTTTAGGGTTTTAATTAGTTAGGGTATA
190 TAT-TATGTAATTGTAA---AAGATAATAATAAAAATGTTTACGGTTTTAATTAGTTAGGGTATA
* * *
21395849 TGATAAATTTAAGATTTAAGGCTAGTTTAGGAGTTCATATTTTAAGGTTTAGGTAGTATATA
251 TGATAAATTTAAGATTTAAGGCGAGTTTAGGAATTCATATTTTAAGGTTTAGGGAGTATATA
** *
21395911 TGGATTTAG-TT-A-TAGGGATTATGGATTAGGGATTATGGTTTAATATTTAAGGGTTGGGATTT
1 TATATATAGATTAATTAGGGATTATGGATTAGGGATTATGGTTT-A-A-TTAAGGGTTGGGATTT
* *
21395973 AAGGTTTAGGTGTTAGGGGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTGGGGTTT
63 AA-GTTTAGGTGTTAGGGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTT
21396038 ACGAATTCAGGGTCGAGTTAGGGTTTTGGGTTTAGATTATTATTTTTTCTTTATACTTTAAAT-T
127 ACGAATTCAGGGTCGAGTTAGGGTTTTGGGTTTAGATTA-T-TTTTTT-TTTATA-TTTAAATAT
*
21396102 TTTATTATGTAGTTGTAAAAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATA
188 TTTATTATGTAATTGTAAAAGATAATAATAAAAATGTTTACGGTTTT-AATTAG-TTAGGGTATA
*
21396167 TGATAAATTTAAGATTTTAGGCCGA-TTTAGGAATTCATATTTTAAGGTTTAGGGAGTACTATA
251 TGATAAATTTAAGATTTAAGG-CGAGTTTAGGAATTCATATTTTAAGGTTTAGGGAGTA-TATA
* * *
21396230 TATATATGGATTAATTAGGGATTATAGATTAGGGATTA-CGTTTAATTAAGGGTTGGCCAGATTT
1 TATATATAGATTAATTAGGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGG---GATTT
* *
21396294 AAGATTTAAGG-GTTAGGGGTTTAGGGGTTAGACGTTAGTGGTTAAGAGTTAAGGATTTAGGGTT
63 AAG-TTT-AGGTGTTAGGGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTT
* * * *
21396358 TAGGATTTCAAGGGTTGGGTTAGGGTTTTGGGTTTAGATTAATTTTTTTATTTATATTTAAATAT
126 TACGAATTC-AGGGTCGAGTTAGGGTTTTGGGTTTAGATT-ATTTTTTT-TTTATATTTAAATAT
* *
21396423 GTTCTTATGTAATTGTAAAAGAT
188 TTTATTATGTAATTGTAAAAGAT
21396446 GTATAATTTA
Statistics
Matches: 461, Mismatches: 42, Indels: 55
0.83 0.08 0.10
Matches are distributed among these distances:
309 15 0.03
310 13 0.03
311 3 0.01
312 6 0.01
313 8 0.02
314 8 0.02
316 26 0.06
317 6 0.01
318 73 0.16
319 24 0.05
320 17 0.04
321 140 0.30
322 105 0.23
323 8 0.02
324 9 0.02
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (312 bp):
TATATATAGATTAATTAGGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAG
TTTAGGTGTTAGGGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGA
ATTCAGGGTCGAGTTAGGGTTTTGGGTTTAGATTATTTTTTTTTTATATTTAAATATTTTATTAT
GTAATTGTAAAAGATAATAATAAAAATGTTTACGGTTTTAATTAGTTAGGGTATATGATAAATTT
AAGATTTAAGGCGAGTTTAGGAATTCATATTTTAAGGTTTAGGGAGTATATA
Found at i:21396774 original size:19 final size:18
Alignment explanation
Indices: 21396741--21396779 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
21396731 AAATTATATG
*
21396741 AAATAAAATTAAAATACAA
1 AAATAAAAATAAAATA-AA
*
21396760 AAATAAAAATGAAATAAA
1 AAATAAAAATAAAATAAA
21396778 AA
1 AA
21396780 CACTAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (18 bp):
AAATAAAAATAAAATAAA
Found at i:21396842 original size:47 final size:47
Alignment explanation
Indices: 21396774--21396871 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
21396764 AAAAATGAAA
* * * * *
21396774 TAAAAACACTAGAATTTTAATTTTGTCTAATTTTTATAAATATTACT
1 TAAAAACACTAAAATTATAATTTTATCTAAATTTTATAAATATTACC
21396821 TAAAAA-ACTAAAATTGATAATTTTATCTAAATTTTATAAATATTACC
1 TAAAAACACTAAAATT-ATAATTTTATCTAAATTTTATAAATATTACC
21396868 TAAA
1 TAAA
21396872 CAAAAGTATG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
46 8 0.18
47 37 0.82
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (47 bp):
TAAAAACACTAAAATTATAATTTTATCTAAATTTTATAAATATTACC
Found at i:21411161 original size:37 final size:37
Alignment explanation
Indices: 21411089--21411166 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
21411079 TATTACGAAA
* * * *
21411089 TCTTACCCGGACATAATCTCCATACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
21411126 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
21411163 TCTT
1 TCTT
21411167 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:21411356 original size:47 final size:47
Alignment explanation
Indices: 21411282--21411633 Score: 541
Period size: 47 Copynumber: 7.7 Consensus size: 47
21411272 GCCCTTCGGG
*
21411282 ACTTATCACATTCATCACATCGGCCATTA-GCCCTATCACATATATTAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TAC
21411330 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
21411378 AC-TTCACA-T--TCACATC-GCC--TA-G-CTTATCA-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21411415 ACTTTCACATTCATC-CATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21411461 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21411508 ACTGTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21411555 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21411602 ACTTTCACATTCATCACATCGGCTATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
21411634 ATACTATCAT
Statistics
Matches: 284, Mismatches: 5, Indels: 31
0.89 0.02 0.10
Matches are distributed among these distances:
37 10 0.04
38 6 0.02
39 2 0.01
40 10 0.04
41 7 0.02
43 5 0.02
44 8 0.03
45 7 0.02
46 24 0.08
47 188 0.66
48 12 0.04
49 5 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:21420840 original size:24 final size:22
Alignment explanation
Indices: 21420790--21420844 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
21420780 TCAATAAAAT
* *
21420790 CAATAAATCAAAACAACAAGAA
1 CAATAAATTAAAAAAACAAGAA
21420812 C--TAAATTAAAATAAACAAGAAA
1 CAATAAATTAAAA-AAACAAG-AA
21420834 CAATAAATTAA
1 CAATAAATTAA
21420845 GGCTAGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 9 0.33
21 6 0.22
22 4 0.15
24 8 0.30
ACGTcount: A:0.67, C:0.13, G:0.04, T:0.16
Consensus pattern (22 bp):
CAATAAATTAAAAAAACAAGAA
Found at i:21422492 original size:17 final size:19
Alignment explanation
Indices: 21422452--21422493 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
21422442 TTGATCTAAC
21422452 ATACAATGTGATATAAATT
1 ATACAATGTGATATAAATT
* *
21422471 TTACAAT-TTATAT-AATT
1 ATACAATGTGATATAAATT
21422488 ATACAA
1 ATACAA
21422494 ATACAACTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.45
18 5 0.25
19 6 0.30
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (19 bp):
ATACAATGTGATATAAATT
Found at i:21426017 original size:41 final size:41
Alignment explanation
Indices: 21425922--21426302 Score: 462
Period size: 41 Copynumber: 9.4 Consensus size: 41
21425912 ATTCGGTGGC
* * * * *
21425922 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCT-GGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21425962 TTTAGCGGCATTTTTTTAAAAGCGCTGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* *
21426003 TTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21426044 TTTAGCTGCGTTTTTTAAAAAGCGCCTCTAATGCTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
** * * *
21426085 TTTAGCAACGTTTTTTAAAAAGCACCACTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21426126 TGTAGCGGCGTTTTTT-AAAAGAGCCGCTAATGGTCTGAGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
*
21426166 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
** * * * *
21426207 TTTA-CCACGTGTTTTAAAAAGAGTCGCTAATGGTCTTGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
* * *
21426247 TTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
21426288 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
21426303 GTTAAAGCGC
Statistics
Matches: 288, Mismatches: 50, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
40 97 0.34
41 191 0.66
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGT
Found at i:21426058 original size:81 final size:81
Alignment explanation
Indices: 21425922--21426312 Score: 439
Period size: 81 Copynumber: 4.8 Consensus size: 81
21425912 ATTCGGTGGC
* * * * * *
21425922 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCT-GGTTTTAGCGGCATTTTTTTAAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGC-GTTTTTTAAAAGCG
21425986 CTGCTAATGGTCTGGGT
65 CTGCTAATGGTCTGGGT
* * *
21426003 TTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGTTTTAGCTGCGTTTTTTAAAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTT-AAAAGCG
*
21426068 CCT-CTAATGCTCTGGGT
65 -CTGCTAATGGTCTGGGT
** * * * * *
21426085 TTTAGCAACGTTTTTTAAAAAGCACCACTAATGGTCTTGGTTGTAGCGGCGTTTTTTAAAAGAGC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAGCGC
* *
21426150 CGCTAATGGTCTGAGT
66 TGCTAATGGTCTGGGT
* ** * *
21426166 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGTTTTA-CCACGTGTTTTAAAAAGAG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGT-TTTTTAAAAGCG
*
21426230 -TCGCTAATGGTCTTGGT
65 CT-GCTAATGGTCTGGGT
* * * *
21426247 TTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTGTTAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTT-TAAAAGCG
21426312 C
65 C
21426313 CGTAAAAAAC
Statistics
Matches: 258, Mismatches: 43, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
80 5 0.02
81 163 0.63
82 88 0.34
83 2 0.01
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (81 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAGCGC
TGCTAATGGTCTGGGT
Found at i:21426078 original size:122 final size:122
Alignment explanation
Indices: 21425922--21426302 Score: 473
Period size: 122 Copynumber: 3.1 Consensus size: 122
21425912 ATTCGGTGGC
* * * * ** * *
21425922 TTTAGTGGCGTTTATGAGAAAGCGCCGCTAATGCTCT-GGTTTTAGCGGCATTTTTTTAAAAGCG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTTAAAAAGCG
* *
21425986 CTGCTAATGGTCTGGGTTTTAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCTGGGT
66 CTGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTAAAAAGCG-CGCTAATGGTCTGGGT
* * *
21426044 TTTAGCTGCGTTTTTTAAAAAGCGCCTCTAATGCTCTGGGTTTTAGCAACGTTTTTTAAAAAGCA
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTTAAAAAGCG
** * *
21426109 CCACTAATGGTCTTGGTTGTAGCGGCGTTTTTTAAAAGAGC-CGCTAATGGTCTGAGT
66 CTGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTAAAA-AGCGCGCTAATGGTCTGGGT
* * * * *
21426166 TTTAGCGGCGTTTTTTAAAAAGCGGCGCTAATGGTCTGGGTTTTA-CCACGTGTTTTAAAAAGAG
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTTAAAAAGCG
* * *
21426230 -TCGCTAATGGTCTTGGTTTTAACGGCATTTTTTTAAAAGCGCCGCTAATGGTCTGGGT
66 CT-GCTAATGGTCTTGGTTTTAGCGGCGTTTTTTAAAAAGCG-CGCTAATGGTCTGGGT
21426288 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
21426303 GTTAAAGCGC
Statistics
Matches: 222, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
120 3 0.01
121 45 0.20
122 116 0.52
123 55 0.25
124 3 0.01
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (122 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCTGGGTTTTAGCAACGTTTTTTAAAAAGCG
CTGCTAATGGTCTTGGTTTTAGCGGCGTTTTTTAAAAAGCGCGCTAATGGTCTGGGT
Found at i:21427079 original size:15 final size:15
Alignment explanation
Indices: 21427059--21427122 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 15
21427049 TGGGATTTAA
*
21427059 GGTTTAGGTGTTAGG
1 GGTTTAGGGGTTAGG
*
21427074 GGTTTAGGGGTTAGA
1 GGTTTAGGGGTTAGG
* *
21427089 CG-TTAGGGGTTAAG
1 GGTTTAGGGGTTAGG
* * *
21427103 AG-TTAGGGATTTGG
1 GGTTTAGGGGTTAGG
21427117 GGTTTA
1 GGTTTA
21427123 CGAATTCAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 21 0.55
15 17 0.45
ACGTcount: A:0.19, C:0.02, G:0.44, T:0.36
Consensus pattern (15 bp):
GGTTTAGGGGTTAGG
Found at i:21427079 original size:22 final size:22
Alignment explanation
Indices: 21427054--21427108 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
21427044 AGGGTTGGGA
* **
21427054 TTTAAGGTTTAGGTGTTAGGGG
1 TTTAAGGGTTAGACGTTAGGGG
*
21427076 TTTAGGGGTTAGACGTTAGGGG
1 TTTAAGGGTTAGACGTTAGGGG
*
21427098 -TTAAGAGTTAG
1 TTTAAGGGTTAG
21427109 GGATTTGGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.22, C:0.02, G:0.40, T:0.36
Consensus pattern (22 bp):
TTTAAGGGTTAGACGTTAGGGG
Found at i:21427096 original size:14 final size:14
Alignment explanation
Indices: 21427077--21427110 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
21427067 TGTTAGGGGT
21427077 TTAGGGGTT-AGACG
1 TTAGGGGTTAAGA-G
21427091 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
21427105 TTAGGG
1 TTAGGG
21427111 ATTTGGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.24, C:0.03, G:0.44, T:0.29
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:21427261 original size:318 final size:312
Alignment explanation
Indices: 21426632--21427531 Score: 1020
Period size: 322 Copynumber: 2.8 Consensus size: 312
21426622 ATTTTATTGA
* * * * * *
21426632 AAGATTTAATGTCGGTTTAAGAGTTTATA-TTTAAGGTTTTA-GTGAGTATATATCGA-TTA-AT
1 AAGATTTAA-GGCAGTTTAGGAGTTCATATTTTAAGG-TTTAGGT-AGTATATATAGATTTAGTT
* * *
21426693 -TAGGGATTATGGATGAGGGATTATGGTTTAATTAAAGGTTTGGATTTAA---T--GT-TTAGGG
63 ATAGGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAGTTTAGGTGTTAGGG
* * * * *
21426751 G-TTAAGGGTTAGACGTTAAAGGTTAATAGTTAGGGATTTAGGGTTTACAAATTTAGGGGTC-AG
128 GTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGAATTCA-GGGTCGA-
* * *
21426814 GTTAGGGTTTTGAGATTAGATTATTTTTTGTTTTATATTTTAAATATATTATTATATATGTAATT
191 GTTAGGGTTTTGGGTTTAGATTATTTTTTTTTTTATATTTT-AA-ATATT-TTAT-TATGTAATT
* * * *
21426879 GTAATTTAACATAATAATAAAATTGTTTAGGGTTTTTAATTAGTTTAGGGTATATGATAAATTT
252 GTAA---AAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
*
21426943 AAGATTTAAGGCTAGTTTAGGAGTTCATATTTTAAGGTTTAGGTAGTATATATGGATTTAGTTAT
1 AAGATTTAAGGC-AGTTTAGGAGTTCATATTTTAAGGTTTAGGTAGTATATATAGATTTAGTTAT
21427008 AGGGATTATGGATTAGGGATTATGGTTTAATATTTAAGGGTTGGGATTTAAGGTTTAGGTGTTAG
65 AGGGATTATGGATTAGGGATTATGGTTT-A-A-TTAAGGGTTGGGATTTAA-GTTTAGGTGTTAG
* *
21427073 GGGTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTGGGGTTTACGAATTCAGGGTCGA
126 GGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGAATTCAGGGTCGA
* *
21427138 GTTAGGGTTTTGGGTTTAGATTATTATTTTTTCTTTATACTTTAAAT-TTTTATTATGTAGTTGT
191 GTTAGGGTTTTGGGTTTAGATTATT-TTTTTT-TTTATATTTTAAATATTTTATTATGTAATTGT
21427202 AAAAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
254 AAAAGATAATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
* * * * * * *
21427261 AAGATTTTAGGCCGATTTAGGAATTCATATTTTAAGGTTTAGGGAGTACTATATATATATGGATT
1 AAGATTTAAGGCAG-TTTAGGAGTTCATATTTTAAGGTTTAGGTAGTA-TATATAGATTTAG-TT
* *
21427326 AATTAGGGATTATAGATTAGGGATTACGGTTTAATTAAGGGTTGGCCAGATTTAAGATTTAAGG-
63 -A-TAGGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGG---GATTTAAG-TTT-AGGT
* * * *
21427390 GTTAGGGGTTTAGGGGTTAGACGTTAGTGGTTAAGAGTTAAGGATTTAGGGTTTAGGATTTCAAG
121 GTTAGGGGTTTAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGAATTC-AG
* * * * *
21427455 GGTTGGGTTAGGGTTTTGGGTTTAGATTAATTTTTTTATTTATATTTTAAATATGTTCTTATGTA
185 GGTCGAGTTAGGGTTTTGGGTTTAGATT-ATTTTTTTTTTTATATTTTAAATATTTTATTATGTA
21427520 ATTGTAAAAGAT
249 ATTGTAAAAGAT
21427532 GTATAATTTA
Statistics
Matches: 509, Mismatches: 47, Indels: 54
0.83 0.08 0.09
Matches are distributed among these distances:
310 2 0.00
311 37 0.07
312 12 0.02
313 1 0.00
314 28 0.06
315 1 0.00
316 1 0.00
317 17 0.03
318 95 0.19
319 20 0.04
320 3 0.01
321 16 0.03
322 111 0.22
323 61 0.12
324 40 0.08
325 55 0.11
326 9 0.02
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.43
Consensus pattern (312 bp):
AAGATTTAAGGCAGTTTAGGAGTTCATATTTTAAGGTTTAGGTAGTATATATAGATTTAGTTATA
GGGATTATGGATTAGGGATTATGGTTTAATTAAGGGTTGGGATTTAAGTTTAGGTGTTAGGGGTT
TAGGGGTTAGACGTTAGAGGTTAAGAGTTAGGGATTTAGGGTTTACGAATTCAGGGTCGAGTTAG
GGTTTTGGGTTTAGATTATTTTTTTTTTTATATTTTAAATATTTTATTATGTAATTGTAAAAGAT
AATAATAAAAATGTTTACGGTTTTAAATTAGTTTAGGGTATATGATAAATTT
Found at i:21427861 original size:19 final size:18
Alignment explanation
Indices: 21427828--21427866 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
21427818 AAATTATATG
*
21427828 AAATAAAATTAAAATACAA
1 AAATAAAAATAAAATA-AA
*
21427847 AAATAAAAATGAAATAAA
1 AAATAAAAATAAAATAAA
21427865 AA
1 AA
21427867 CACTAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (18 bp):
AAATAAAAATAAAATAAA
Found at i:21427938 original size:47 final size:48
Alignment explanation
Indices: 21427861--21427959 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
21427851 AAAAATGAAA
* ** * * *
21427861 TAAAAACACTAGAATTTTTAATTTTGTCTAATTTTTATAAATATTACT
1 TAAAAACACTAAAATTGATAATTTTATCTAAATTTTATAAATATTACC
21427909 TAAAAA-ACTAAAATTGATAATTTTATCTAAATTTTATAAATATTACC
1 TAAAAACACTAAAATTGATAATTTTATCTAAATTTTATAAATATTACC
21427956 TAAA
1 TAAA
21427960 CAAAAGTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 39 0.87
48 6 0.13
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.43
Consensus pattern (48 bp):
TAAAAACACTAAAATTGATAATTTTATCTAAATTTTATAAATATTACC
Found at i:21429613 original size:13 final size:14
Alignment explanation
Indices: 21429589--21429632 Score: 56
Period size: 13 Copynumber: 3.1 Consensus size: 14
21429579 TTTGATTGAA
21429589 TGAATGGAATTTTC
1 TGAATGGAATTTTC
21429603 TGAAT-GAATTTTC
1 TGAATGGAATTTTC
21429616 TGAA-GGTAAATTTTC
1 TGAATGG--AATTTTC
21429631 TG
1 TG
21429633 TTGCAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 13 0.48
14 5 0.19
15 9 0.33
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (14 bp):
TGAATGGAATTTTC
Found at i:21431374 original size:66 final size:66
Alignment explanation
Indices: 21431268--21431415 Score: 199
Period size: 66 Copynumber: 2.2 Consensus size: 66
21431258 AGAAAATTAC
* * *
21431268 ACAACTTAAAGCGGAGGCAGCATCGAAAGAAGCTGAGGTTCAAA-AAAGATATGAAAAACTCCAG
1 ACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAGAAAG-TATGAAAAACTCCAG
21431332 CT
65 CT
* * * *
21431334 ACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGGAAGTATGAAGAACTCCAGC
1 ACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCAGC
21431399 T
66 T
* *
21431400 GCAGCTTAAAGCAGAT
1 ACAACTTAAAGCAGAT
21431416 ACGGTAGCGA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
66 68 0.96
67 3 0.04
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (66 bp):
ACAACTTAAAGCAGATGCAGCAGCGAAAGAAGCTGAGGTTCAAAGAAAGTATGAAAAACTCCAGC
T
Found at i:21431425 original size:66 final size:66
Alignment explanation
Indices: 21431268--21431437 Score: 189
Period size: 66 Copynumber: 2.6 Consensus size: 66
21431258 AGAAAATTAC
* ** * *
21431268 ACAACTTAAAGCGGAGGCAGCATCGAAAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
1 ACAACTTAAAGCAGATACAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
21431333 T
66 T
* * * *
21431334 ACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAGGAAG-TATGAAGAACTCCAG
1 ACAACTTAAAGCAGATACAGCAGCGAGAGAAGCTGAGGTTCAAA-AAAGATATGAAAAACTCCAG
21431398 CT
65 CT
* * * * * *
21431400 GCAGCTTAAAGCAGATACGGTAGCGAGGGAAGCAGAGG
1 ACAACTTAAAGCAGATACAGCAGCGAGAGAAGCTGAGG
21431438 CAGCAGCGAG
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
66 85 0.97
67 3 0.03
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (66 bp):
ACAACTTAAAGCAGATACAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
T
Found at i:21431828 original size:43 final size:43
Alignment explanation
Indices: 21431779--21432000 Score: 177
Period size: 43 Copynumber: 5.2 Consensus size: 43
21431769 CATTTTTTAA
* * * * *
21431779 AAAAGCGTCGCTAAAAGTCATGGCCTTTTGCGGCATTTTTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCATATAGCGGCATTTGTGGG
* *
21431822 AAAAGCGCCGCTAAAAGTCATGGTATATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGGCATATAGCGGCATTTGTGGG
* * *
21431865 AAAAGCACCGCTAAAGGTCATGGTC-TATAGCGGTGA-TTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGG-CATATAGCGG-CATTTGTGGG
* * **
21431908 AAAAGCACCGCT-AAAGATCATGGTC-TATAGCGGCATTTCTGTA
1 AAAAGCGCCGCTAAAAG-TCATGG-CATATAGCGGCATTTGTGGG
* * * * *
21431951 AAAAGCGCAGCT-AAAGATCATGACCTTTAGCGGCGTTTGT-GG
1 AAAAGCGCCGCTAAAAG-TCATGGCATATAGCGGCATTTGTGGG
*
21431993 AGAAGCGC
1 AAAAGCGC
21432001 ACCTTTAACG
Statistics
Matches: 148, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
42 12 0.08
43 136 0.92
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGGCATATAGCGGCATTTGTGGG
Found at i:21431982 original size:86 final size:86
Alignment explanation
Indices: 21431818--21431992 Score: 208
Period size: 86 Copynumber: 2.0 Consensus size: 86
21431808 GCGGCATTTT
* * * * * *
21431818 TGGGAAAAGCGCCGCTAAAAGTCATGGTATATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGT
1 TGGGAAAAGCACCGCTAAAAGTCATGGTATATAGCGGCATTTCTGGAAAAAGCACAGCTAAAGAT
** *
21431883 CATGGTCTATAGCGGTGATTG
66 CATGACCTATAGCGGCGATTG
* * *
21431904 TGGGAAAAGCACCGCT-AAAGATCATGGTCTATAGCGGCATTTCTGTAAAAAGCGCAGCTAAAGA
1 TGGGAAAAGCACCGCTAAAAG-TCATGGTATATAGCGGCATTTCTGGAAAAAGCACAGCTAAAGA
* *
21431968 TCATGACCTTTAGCGGCGTTTG
65 TCATGACCTATAGCGGCGATTG
21431990 TGG
1 TGG
21431993 AGAAGCGCAC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
85 4 0.05
86 70 0.95
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (86 bp):
TGGGAAAAGCACCGCTAAAAGTCATGGTATATAGCGGCATTTCTGGAAAAAGCACAGCTAAAGAT
CATGACCTATAGCGGCGATTG
Found at i:21435057 original size:34 final size:34
Alignment explanation
Indices: 21435019--21435085 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
21435009 TCAATTTAAT
* * *
21435019 TGGGCCTTAACCTATTATAGTGACAGTATCAGTA
1 TGGGCCTTAACCCATTACAGTGACAGTAACAGTA
*
21435053 TGGGCCTTAGCCCATTACAGTGACAGTAACAGT
1 TGGGCCTTAACCCATTACAGTGACAGTAACAGT
21435086 TCAGACATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (34 bp):
TGGGCCTTAACCCATTACAGTGACAGTAACAGTA
Found at i:21435402 original size:27 final size:27
Alignment explanation
Indices: 21435358--21435560 Score: 214
Period size: 27 Copynumber: 7.6 Consensus size: 27
21435348 TTAAGCATAC
* **
21435358 AGTCATTTT-TAACTTAGGGGTGTAAT
1 AGTCATTTTATAACATAGGGGCATAAT
*
21435384 AATCATTTTATAACATAGGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
* *
21435411 AGTTATTTTATAACATAAGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
* *
21435438 CGTCATTTTATAACATAGAGGCATAA-
1 AGTCATTTTATAACATAGGGGCATAAT
** * *
21435464 CCTCCATTTTATAACATAGGGACATGAT
1 AGT-CATTTTATAACATAGGGGCATAAT
*
21435492 AGTCATTTTATAACATAGGAGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
* ** *
21435519 AGTTATTTTACCACGT-GAGGGCATAAT
1 AGTCATTTTATAACATAG-GGGCATAAT
21435546 AGTCATTTTATAACA
1 AGTCATTTTATAACA
21435561 GTTTAAAGGT
Statistics
Matches: 144, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
26 11 0.08
27 132 0.92
28 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (27 bp):
AGTCATTTTATAACATAGGGGCATAAT
Found at i:21436849 original size:16 final size:16
Alignment explanation
Indices: 21436828--21436859 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21436818 TACTTAGAAT
*
21436828 TTTAGTCGATCTCAAA
1 TTTAGTCAATCTCAAA
21436844 TTTAGTCAATCTCAAA
1 TTTAGTCAATCTCAAA
21436860 CTCTCACACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (16 bp):
TTTAGTCAATCTCAAA
Found at i:21439123 original size:32 final size:31
Alignment explanation
Indices: 21439061--21439152 Score: 166
Period size: 32 Copynumber: 2.9 Consensus size: 31
21439051 AGTCAAATTA
21439061 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
21439092 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
*
21439124 AAAGAGTAATTGAATCCTAATAAAACTCT
1 CAAGAGTAATTGAATCCTAATAAAACTCT
21439153 CTAAGAAAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 29 0.49
32 30 0.51
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:21441470 original size:15 final size:15
Alignment explanation
Indices: 21441450--21441482 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
21441440 AATTTTTTAA
21441450 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
21441465 AAATTATTAAAAATT
1 AAATTATTAAAAATT
21441480 AAA
1 AAA
21441483 ATTTTATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:21441886 original size:145 final size:143
Alignment explanation
Indices: 21441699--21441961 Score: 373
Period size: 145 Copynumber: 1.8 Consensus size: 143
21441689 TTATTTATTT
* * * ** *
21441699 TTTTACGATTAAAAAATTGAGATTTACTATAAATTGTTAAATTTCAATTAAATATCAAGTTTTAC
1 TTTTACAATTAAAAAATTAAGATTTACTACAAATTGACAAATTTCAATTAAAGATCAAGTTTTAC
* * * *
21441764 TCAATTCTTTATTTATTTCCATACTCAAAATAATTATATTATATTAGTAACACCTTCTATAATTT
66 CCAATTATCTATTTATTTCCATACCCAAAATAATTATATTATATTAGTAACACCTTCTATAATTT
21441829 ACCCATTTTGTTA
131 ACCCATTTTGTTA
* ** *
21441842 TTTTACAATTAAAAATTATTAAGATTTACTACAAATTGACAAATTTCAATTGAAGATTGATTTTT
1 TTTTACAATTAAAAA--ATTAAGATTTACTACAAATTGACAAATTTCAATTAAAGATCAAGTTTT
*
21441907 ACCCAATTATCTATTTCTTTCCATACCCAAAATAATTATATTATATTAGTAACAC
64 ACCCAATTATCTATTTATTTCCATACCCAAAATAATTATATTATATTAGTAACAC
21441962 TTTTTATAGT
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
143 14 0.14
145 89 0.86
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (143 bp):
TTTTACAATTAAAAAATTAAGATTTACTACAAATTGACAAATTTCAATTAAAGATCAAGTTTTAC
CCAATTATCTATTTATTTCCATACCCAAAATAATTATATTATATTAGTAACACCTTCTATAATTT
ACCCATTTTGTTA
Found at i:21448847 original size:27 final size:27
Alignment explanation
Indices: 21448817--21448884 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
21448807 AAACCTAAAG
**
21448817 GAATGATATTCATGTCGAACTTTGAAT
1 GAATGATATTCATGGAGAACTTTGAAT
*
21448844 GAATGATATTTATGGAGAACTTTGAAT
1 GAATGATATTCATGGAGAACTTTGAAT
* *
21448871 GAACGATATGCATG
1 GAATGATATTCATG
21448885 ACAAACTATG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (27 bp):
GAATGATATTCATGGAGAACTTTGAAT
Found at i:21455509 original size:66 final size:66
Alignment explanation
Indices: 21455376--21455509 Score: 153
Period size: 66 Copynumber: 2.0 Consensus size: 66
21455366 GCAAATTGCT
* ** * * * *
21455376 CAACTTAAAGCGGAGGCAGCATTGAGAGAAGCAGAGACTCAAAGAAAATATGATGAACTCTAGCT
1 CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACAAAGAAAATATGACGAACTCCAACT
21455441 A
66 A
* * * *
21455442 CAACTTAAATCGAAGGCAGCAGCGAGGGAAGCAGAGGCA-ACAAGAAAATATGACGAATTCCAAC
1 CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACA-AAGAAAATATGACGAACTCCAAC
21455506 TA
65 TA
21455508 CA
1 CA
21455510 GCTTCAGAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
65 1 0.02
66 55 0.98
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACAAAGAAAATATGACGAACTCCAACT
A
Found at i:21457266 original size:22 final size:23
Alignment explanation
Indices: 21457238--21457283 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
21457228 ATTTGATGAA
*
21457238 TGAATTATTTAAAA-TTTTTATT
1 TGAATTATTCAAAAGTTTTTATT
21457260 TGAATTATTCAAAAGTTTTTATT
1 TGAATTATTCAAAAGTTTTTATT
21457283 T
1 T
21457284 AAGTCATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TGAATTATTCAAAAGTTTTTATT
Found at i:21462277 original size:22 final size:23
Alignment explanation
Indices: 21462252--21462300 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
21462242 ACATATGAAT
21462252 ATACTTAC-A-TTTTTAGTTTATA
1 ATACTTACAATTTTTTA-TTTATA
21462274 ATACTTACAGATTTTTTATTTATA
1 ATACTTACA-ATTTTTTATTTATA
21462298 ATA
1 ATA
21462301 TATATTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.33
24 10 0.42
25 6 0.25
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (23 bp):
ATACTTACAATTTTTTATTTATA
Found at i:21462811 original size:107 final size:107
Alignment explanation
Indices: 21462625--21462836 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 107
21462615 AAAGGAAGGT
* *
21462625 TTTTCTAAATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
* *
21462690 TCGATTTCTCGTTCGACCAAATAGCCAAGTATCCTTTTAAGA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
21462732 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
*
21462797 TCGATTTCTCGTTCGACTAAATAGCCAAATATCCTCTTAA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAA
21462837 AACTTCAAAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 100 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
Found at i:21470982 original size:44 final size:45
Alignment explanation
Indices: 21470903--21471322 Score: 297
Period size: 44 Copynumber: 9.6 Consensus size: 45
21470893 GATTAAAGTC
* * ** *
21470903 AGAT-GCAGATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * * * * *
21470946 AGCTAGCAGGTCCTATCTTCCTATAATGATTG-GAAGTGGATCGA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * * * *
21470990 CGA-CGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * ** *
21471034 AGAAAGCAGATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * * *
21471078 AGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * *
21471122 AGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * ** *
21471166 AGAAAGCAGATCTTGTCTTCATTTATTG-GCGTGAAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * * *
21471210 AGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * * *
21471254 AGATA-CAGATCTTGTCTTCCCATACTGGT--TGAAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
* * *
21471296 AGATTGCAGATCTTGCCTTCCTGTATT
1 AGATAGCAGATCTTGTCTTCCTATATT
21471323 TGCAGAGAAG
Statistics
Matches: 286, Mismatches: 81, Indels: 20
0.74 0.21 0.05
Matches are distributed among these distances:
42 14 0.05
43 79 0.28
44 150 0.52
45 43 0.15
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (45 bp):
AGATAGCAGATCTTGTCTTCCTATATTGATAGCGAAGTAGATCGA
Found at i:21471144 original size:132 final size:132
Alignment explanation
Indices: 21470907--21471322 Score: 683
Period size: 132 Copynumber: 3.2 Consensus size: 132
21470897 AAAGTCAGAT
* *
21470907 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGCTAGCAGGTCCTATCTTCCTATAA
1 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
* * * *
21470972 TGATTGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
66 TGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
21471037 AA
131 AA
21471039 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
1 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
21471104 TGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
66 TGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
21471169 AA
131 AA
*
21471171 GCAGATCTTGTCTTCATTTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
1 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
* * * *
21471236 TGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGT--TGAAGTAGATCGAAGA
66 TGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
**
21471299 TT
131 AA
* *
21471301 GCAGATCTTGCCTTCCTGTATT
1 GCAGATCTTGTCTTCATGTATT
21471323 TGCAGAGAAG
Statistics
Matches: 268, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
130 33 0.12
132 235 0.88
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (132 bp):
GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATAT
TGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
AA
Found at i:21472133 original size:42 final size:43
Alignment explanation
Indices: 21472074--21472156 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 43
21472064 CTGCTTGCTA
21472074 TCCATTTATTTACTTATTCAT-TCTTTTTTATTTCTCAAGATC
1 TCCATTTATTTACTTATTCATGTCTTTTTTATTTCTCAAGATC
* *
21472116 TCCATTTATTTACTTATTCATGTTTTTTTTATTTCTTAAGA
1 TCCATTTATTTACTTATTCATGTCTTTTTTATTTCTCAAGA
21472157 ATCAATCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 21 0.55
43 17 0.45
ACGTcount: A:0.22, C:0.16, G:0.04, T:0.59
Consensus pattern (43 bp):
TCCATTTATTTACTTATTCATGTCTTTTTTATTTCTCAAGATC
Found at i:21490643 original size:66 final size:66
Alignment explanation
Indices: 21490510--21490643 Score: 153
Period size: 66 Copynumber: 2.0 Consensus size: 66
21490500 GCAAATTGCT
* ** * * * *
21490510 CAACTTAAAGCGGAGGCAGCATTGAGAGAAGCAGAGACTCAAAGAAAATATGATGAACTCTAGCT
1 CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACAAAGAAAATATGACGAACTCCAACT
21490575 A
66 A
* * * *
21490576 CAACTTAAATCGAAGGCAGCAGCGAGGGAAGCAGAGGCA-ACAAGAAAATATGACGAATTCCAAC
1 CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACA-AAGAAAATATGACGAACTCCAAC
21490640 TA
65 TA
21490642 CA
1 CA
21490644 GCTTCAGAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
65 1 0.02
66 55 0.98
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGCGAAGGCAGCAGCGAGAGAAGCAGAGACACAAAGAAAATATGACGAACTCCAACT
A
Found at i:21492402 original size:23 final size:23
Alignment explanation
Indices: 21492372--21492418 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
21492362 ATTTGATGAA
*
21492372 TGAATTATTTTAAAA-TTTTTATT
1 TGAATTA-TTCAAAAGTTTTTATT
21492395 TGAATTATTCAAAAGTTTTTATT
1 TGAATTATTCAAAAGTTTTTATT
21492418 T
1 T
21492419 AAGTCATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (23 bp):
TGAATTATTCAAAAGTTTTTATT
Found at i:21497965 original size:107 final size:107
Alignment explanation
Indices: 21497779--21497990 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 107
21497769 AAAGGAAGGT
* *
21497779 TTTTCTAAATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
* *
21497844 TCGATTTCTCGTTCGACCAAATAGCCAAGTATCCTTTTAAGA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
21497886 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
*
21497951 TCGATTTCTCGTTCGACTAAATAGCCAAATATCCTCTTAA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAA
21497991 AACTTCAAAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 100 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
Found at i:21521094 original size:44 final size:45
Alignment explanation
Indices: 21521020--21521421 Score: 270
Period size: 44 Copynumber: 9.1 Consensus size: 45
21521010 GTCATTAAAG
* * * * * *
21521020 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
21521064 CAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGACGAT-G
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
21521107 CAGAT-CTGGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AA
1 CAGATCCT-GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * * * * *
21521151 GCAGATCTTATCTTCATTTATTGG-CGTGAAGTAGATCAAAGATAG
1 -CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
21521196 CAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGACGATGA
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
21521240 -AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AA
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * * * * *
21521283 GCAGATCTTGTCTTCATTTATTGG-CGTGAAGTTGATCAAAGATAG
1 -CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
21521328 CAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-G
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * * **
21521371 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGACCA
1 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
21521416 CAGATC
1 CAGATC
21521422 TTATCTCCCT
Statistics
Matches: 273, Mismatches: 70, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
42 2 0.01
43 62 0.23
44 164 0.60
45 44 0.16
46 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (45 bp):
CAGATCCTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
Found at i:21521253 original size:132 final size:132
Alignment explanation
Indices: 21521016--21521427 Score: 718
Period size: 132 Copynumber: 3.1 Consensus size: 132
21521006 TGAAGTCATT
* * *
21521016 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTGTCTTCCTA
1 AAAGCAGATCTTATCTTCATTTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTA
*
21521081 TATTGGTAGGAAGTGGATCGACGATGCAGATCTGGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
21521146 AG
131 AG
21521148 AAAGCAGATCTTATCTTCATTTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTA
1 AAAGCAGATCTTATCTTCATTTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTA
*
21521213 TATTGGTAGGAAGTGGATCGACGATGAAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
21521278 AG
131 AG
* *
21521280 AAAGCAGATCTTGTCTTCATTTATTGGCGTGAAGTTGATCAAAGATAGCAGGTCCTGTCTTCCTA
1 AAAGCAGATCTTATCTTCATTTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTA
* *
21521345 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
21521410 AG
131 AG
*
21521412 ACCA-CAGATCTTATCT
1 A-AAGCAGATCTTATCT
21521428 CCCTAAGCAG
Statistics
Matches: 267, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
132 266 1.00
133 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTATCTTCATTTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTA
TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
AG
Found at i:21523875 original size:107 final size:107
Alignment explanation
Indices: 21523689--21523900 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 107
21523679 AAAGGAAGGT
* *
21523689 TTTTCTAAATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
* *
21523754 TCGATTTCTCGTTCGACCAAATAGCCAAGTATCCTTTTAAGA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
21523796 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
*
21523861 TCGATTTCTCGTTCGACTAAATAGCCAAATATCCTCTTAA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAA
21523901 AACTTCAAAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 100 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
Found at i:21524991 original size:26 final size:26
Alignment explanation
Indices: 21524962--21525051 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
21524952 ATTGTAATGT
21524962 AAATTATACCTAAACTTATTCTCAGC
1 AAATTATACCTAAACTTATTCTCAGC
* * *
21524988 AAATTTACTAGGACTAATACACATT-TTCTTATC
1 AAA-TTA-TA--CCT-A-A-AC-TTATTCTCAGC
*
21525021 AAATTATACATAAACTTATTCTCAGC
1 AAATTATACCTAAACTTATTCTCAGC
21525047 AAATT
1 AAATT
21525052 TACTAGGACT
Statistics
Matches: 48, Mismatches: 7, Indels: 18
0.66 0.10 0.25
Matches are distributed among these distances:
25 2 0.04
26 16 0.33
27 4 0.08
28 3 0.06
29 1 0.02
30 2 0.04
31 3 0.06
32 4 0.08
33 11 0.23
34 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.37
Consensus pattern (26 bp):
AAATTATACCTAAACTTATTCTCAGC
Found at i:21525029 original size:59 final size:59
Alignment explanation
Indices: 21524962--21525087 Score: 234
Period size: 59 Copynumber: 2.1 Consensus size: 59
21524952 ATTGTAATGT
*
21524962 AAATTATACCTAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
1 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
21525021 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
1 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
*
21525080 AACTTATA
1 AAATTATA
21525088 TTAATTACTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (59 bp):
AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
Found at i:21528749 original size:45 final size:45
Alignment explanation
Indices: 21528691--21528890 Score: 188
Period size: 45 Copynumber: 4.5 Consensus size: 45
21528681 TTGGAAATAT
* * ** *
21528691 AGGTGGATGCTATGTGCTGATTCCACCCAATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
** ** *
21528736 AGGTGGTTGCTATGTGCTGATTTCACCGGATACCAATGGTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
** * *
21528781 AGGTGGTTGCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
* * * * *
21528826 AGGTAGTTGTTATGTGCTGATTTCA-CCAAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAA-TACCAATGAATATAA
* *
21528871 GGGTGG-TGCTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
21528891 CCACCGTGTA
Statistics
Matches: 128, Mismatches: 26, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
44 14 0.11
45 114 0.89
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (45 bp):
AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
Found at i:21528826 original size:90 final size:90
Alignment explanation
Indices: 21528671--21528852 Score: 238
Period size: 90 Copynumber: 2.0 Consensus size: 90
21528661 TTGGAATGGG
* **
21528671 CCGGATACCATTGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATATTAATGAAAATAA
1 CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
*
21528736 AGGTGGTTGCTATGTGCTGATTTCA
66 AGGTAGTTGCTATGTGCTGATTTCA
** * * ** * **
21528761 CCGGATACCAATGGTTATATAGGTGGTTGCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
*
21528826 AGGTAGTTGTTATGTGCTGATTTCA
66 AGGTAGTTGCTATGTGCTGATTTCA
21528851 CC
1 CC
21528853 AAGTACTATT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (90 bp):
CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
AGGTAGTTGCTATGTGCTGATTTCA
Found at i:21533004 original size:43 final size:43
Alignment explanation
Indices: 21532934--21533055 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
21532924 GGCTTGTACA
* * * * * *
21532934 ATGCCAACGTCTCAGACGTGGTTTTACATGTAACCACAGATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACAAATCG
* *
21532977 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAAAACACAAATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAAACACAAATCG
21533020 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACA
21533056 ATTTTCGAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 3 0.05
43 59 0.91
44 3 0.05
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACAAATCG
Found at i:21539691 original size:41 final size:41
Alignment explanation
Indices: 21539602--21539721 Score: 197
Period size: 41 Copynumber: 3.0 Consensus size: 41
21539592 TGATCGAATG
*
21539602 TAATACAGACTTTACGTCTAGCAGGCTTGATG-CGGTGAAA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
*
21539642 TAATTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
* *
21539683 TAATTCAGACTTTACGTCTAGCAGGCTTAATACCGGTGA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGA
21539722 TACATTTCGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 30 0.41
41 44 0.59
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (41 bp):
TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
Found at i:21539743 original size:41 final size:41
Alignment explanation
Indices: 21539607--21539750 Score: 148
Period size: 41 Copynumber: 3.5 Consensus size: 41
21539597 GAATGTAATA
* * * *
21539607 CAGACTTTACGTCTAGCAGGCTTGAT-GCGGTGAAATAATT
1 CAGACTATACGTCTAGCAGGCTTAATACCGGTGAAACAATT
* * * * *
21539647 CAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATAATT
1 CAGACTATACGTCTAGCAGGCTTAATACCGGTGAAACAATT
* * *
21539688 CAGACTTTACGTCTAGCAGGCTTAATACCGGTGATACATTT
1 CAGACTATACGTCTAGCAGGCTTAATACCGGTGAAACAATT
*
21539729 C-GAACTATAGGTCTAGCAGGCT
1 CAG-ACTATACGTCTAGCAGGCT
21539751 AAAAGCAAGT
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
40 26 0.28
41 66 0.72
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
CAGACTATACGTCTAGCAGGCTTAATACCGGTGAAACAATT
Found at i:21544373 original size:24 final size:25
Alignment explanation
Indices: 21544328--21544380 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 25
21544318 AAATTTTTAT
21544328 CAAATTAATCACTTAAAATCATCCAC
1 CAAATTAATCAC-TAAAATCATCCAC
*
21544354 CAAATTAATCA-TAAAATCATTCAC
1 CAAATTAATCACTAAAATCATCCAC
21544378 CAA
1 CAA
21544381 TCATATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 15 0.58
26 11 0.42
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (25 bp):
CAAATTAATCACTAAAATCATCCAC
Found at i:21558936 original size:107 final size:107
Alignment explanation
Indices: 21558750--21558961 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 107
21558740 AAAAGGAAGG
* *
21558750 TTTTCTAAATAAGGTAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
* *
21558815 TCGATTTCTCGTTCGACCAAATAGCCAAGTATCCTTTTAAGA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
21558857 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
1 TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
*
21558922 TCGATTTCTCGTTCGACTAAATAGCCAAATATCCTCTTAA
66 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAA
21558962 AACTTCAAAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
107 100 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTTAAGA
Found at i:21560047 original size:26 final size:26
Alignment explanation
Indices: 21560018--21560107 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
21560008 ATTGTAATGT
21560018 AAATTATACCTAAACTTATTCTCAGC
1 AAATTATACCTAAACTTATTCTCAGC
* * *
21560044 AAATTTACTAGGACTAATACACATT-TTCTTATC
1 AAA-TTA-TA--CCT-A-A-AC-TTATTCTCAGC
*
21560077 AAATTATACATAAACTTATTCTCAGC
1 AAATTATACCTAAACTTATTCTCAGC
21560103 AAATT
1 AAATT
21560108 TACTAGGACT
Statistics
Matches: 48, Mismatches: 7, Indels: 18
0.66 0.10 0.25
Matches are distributed among these distances:
25 2 0.04
26 16 0.33
27 4 0.08
28 3 0.06
29 1 0.02
30 2 0.04
31 3 0.06
32 4 0.08
33 11 0.23
34 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.37
Consensus pattern (26 bp):
AAATTATACCTAAACTTATTCTCAGC
Found at i:21560085 original size:59 final size:59
Alignment explanation
Indices: 21560018--21560143 Score: 234
Period size: 59 Copynumber: 2.1 Consensus size: 59
21560008 ATTGTAATGT
*
21560018 AAATTATACCTAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
1 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
21560077 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
1 AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
*
21560136 AACTTATA
1 AAATTATA
21560144 TTAATTACTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (59 bp):
AAATTATACATAAACTTATTCTCAGCAAATTTACTAGGACTAATACACATTTTCTTATC
Found at i:21563807 original size:45 final size:45
Alignment explanation
Indices: 21563749--21563948 Score: 188
Period size: 45 Copynumber: 4.5 Consensus size: 45
21563739 TTGGAAATAT
* * ** *
21563749 AGGTGGATGCTATGTGCTGATTCCACCCAATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
** ** *
21563794 AGGTGGTTGCTATGTGCTGATTTCACCGGATACCAATGGTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
** * *
21563839 AGGTGGTTGCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
* * * * *
21563884 AGGTAGTTGTTATGTGCTGATTTCA-CCAAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCCAA-TACCAATGAATATAA
* *
21563929 GGGTGG-TGCTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
21563949 CCACCGTGTA
Statistics
Matches: 128, Mismatches: 26, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
44 14 0.11
45 114 0.89
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (45 bp):
AGGTGGTTGCTATGTGCTGATTTCACCCAATACCAATGAATATAA
Found at i:21563884 original size:90 final size:90
Alignment explanation
Indices: 21563729--21563910 Score: 238
Period size: 90 Copynumber: 2.0 Consensus size: 90
21563719 TTGGAATGGG
* **
21563729 CCGGATACCATTGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATATTAATGAAAATAA
1 CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
*
21563794 AGGTGGTTGCTATGTGCTGATTTCA
66 AGGTAGTTGCTATGTGCTGATTTCA
** * * ** * **
21563819 CCGGATACCAATGGTTATATAGGTGGTTGCTATGTGCTGATTTCACCCGGTACCATTGAGTATAA
1 CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
*
21563884 AGGTAGTTGTTATGTGCTGATTTCA
66 AGGTAGTTGCTATGTGCTGATTTCA
21563909 CC
1 CC
21563911 AAGTACTATT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (90 bp):
CCGGATACCAATGGAAATATAGGTGGATGCTATGTGCTGATTCCACCCAATACCAATGAAAATAA
AGGTAGTTGCTATGTGCTGATTTCA
Found at i:21568066 original size:43 final size:43
Alignment explanation
Indices: 21567996--21568117 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
21567986 GGCTTGTACA
* * * * * *
21567996 ATGCCAACGTCTCAGACGTGGTTTTACATGTAACCACAGATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACAAATCG
* *
21568039 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAAAACACAAATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAAACACAAATCG
21568082 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACA
21568118 ATTTTCGAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 3 0.05
43 59 0.91
44 3 0.05
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACAAATCG
Found at i:21571455 original size:25 final size:28
Alignment explanation
Indices: 21571427--21571477 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
21571417 AGTGTGTTAT
21571427 ATGG-AAAACTT-G-TTAATATGTCACC
1 ATGGTAAAACTTGGATTAATATGTCACC
*
21571452 ATGGTAAAATTTGGATTAATATGTCA
1 ATGGTAAAACTTGGATTAATATGTCA
21571478 TTATAGGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 6 0.27
27 1 0.05
28 11 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (28 bp):
ATGGTAAAACTTGGATTAATATGTCACC
Found at i:21574933 original size:41 final size:41
Alignment explanation
Indices: 21574784--21574904 Score: 206
Period size: 41 Copynumber: 3.0 Consensus size: 41
21574774 TGATCGAATG
*
21574784 TAATACAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
*
21574825 TAATTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
* *
21574866 TAATTCAGACTTTACGTCTAGCAGGCTTAATACCGGTGA
1 TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGA
21574905 TACATTTCGA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
TAATTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAA
Found at i:21575244 original size:35 final size:35
Alignment explanation
Indices: 21575178--21575244 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
21575168 TACATTAGGT
*
21575178 ATATGCGATTGTTGAAATTATAAATGCATATGGTG
1 ATATGCGATTGTTGAAATTATAAATACATATGGTG
* * *
21575213 ATATGCGGTTGTT-AAATATATATATATATATG
1 ATATGCGATTGTTGAAAT-TATAAATACATATG
21575245 TTGAGCCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 4 0.15
35 23 0.85
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATGCGATTGTTGAAATTATAAATACATATGGTG
Found at i:21579594 original size:24 final size:25
Alignment explanation
Indices: 21579549--21579601 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 25
21579539 AAATTTTTAT
21579549 CAAATTAATCACTTAAAATCATCCAC
1 CAAATTAATCAC-TAAAATCATCCAC
*
21579575 CAAATTAATCA-TAAAATCATTCAC
1 CAAATTAATCACTAAAATCATCCAC
21579599 CAA
1 CAA
21579602 TCATATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 15 0.58
26 11 0.42
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (25 bp):
CAAATTAATCACTAAAATCATCCAC
Found at i:21583905 original size:43 final size:43
Alignment explanation
Indices: 21583857--21583944 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
21583847 ATTGAAACAT
21583857 AATTTAAAATTTATGCAAAATGCCGTATACCCCCTTTAAAGGG
1 AATTTAAAATTTATGCAAAATGCCGTATACCCCCTTTAAAGGG
21583900 AATTTAAAATTTATGCAAAATGCCGTATACCCCCTTTAAAGGG
1 AATTTAAAATTTATGCAAAATGCCGTATACCCCCTTTAAAGGG
21583943 AA
1 AA
21583945 ACAATATCCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (43 bp):
AATTTAAAATTTATGCAAAATGCCGTATACCCCCTTTAAAGGG
Found at i:21588145 original size:37 final size:37
Alignment explanation
Indices: 21588091--21588164 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
21588081 GTGCTCGTGA
* *
21588091 AGAGGCATCCTCTACTGATGTGATTACGAGTACATTT
1 AGAGGCATCCTCCACTGATGTGATTACAAGTACATTT
21588128 AGAGGCATCCTCCACTGATGTGATTACAAGTACATTT
1 AGAGGCATCCTCCACTGATGTGATTACAAGTACATTT
21588165 TCTCTCTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (37 bp):
AGAGGCATCCTCCACTGATGTGATTACAAGTACATTT
Found at i:21590981 original size:50 final size:50
Alignment explanation
Indices: 21590926--21591065 Score: 172
Period size: 50 Copynumber: 2.8 Consensus size: 50
21590916 CATTGAGATT
* *
21590926 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
** * * *
21590976 ATGAGAGGTCCCCCGTAAGACCATGTTAGAGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
** * * *
21591026 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCAT
21591066 TGACAGTACA
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
Found at i:21594677 original size:24 final size:23
Alignment explanation
Indices: 21594650--21594695 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
21594640 TGGGGGTAGG
* *
21594650 ATCTGTTTATGCATTCGTATCTGT
1 ATCTATTTATGAATT-GTATCTGT
21594674 ATCTATTTATGAATTGTATCTG
1 ATCTATTTATGAATTGTATCTG
21594696 ATTTTGTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.22, C:0.13, G:0.15, T:0.50
Consensus pattern (23 bp):
ATCTATTTATGAATTGTATCTGT
Found at i:21603231 original size:24 final size:23
Alignment explanation
Indices: 21603204--21603249 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
21603194 TATGGGTAGG
* *
21603204 ATCTGTTTATGCATTCGTATCTGT
1 ATCTATTTATGAATT-GTATCTGT
21603228 ATCTATTTATGAATTGTATCTG
1 ATCTATTTATGAATTGTATCTG
21603250 ATTCTGTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.22, C:0.13, G:0.15, T:0.50
Consensus pattern (23 bp):
ATCTATTTATGAATTGTATCTGT
Found at i:21606066 original size:27 final size:26
Alignment explanation
Indices: 21606013--21606069 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
21606003 TAGGTTAGTT
* * *
21606013 TTAAAATAAGTAATATATAAAATAAC
1 TTAAAATAAATAATATACAAAACAAC
*
21606039 TTAAAATAAAATAATATACAAAGCAAC
1 TTAAAAT-AAATAATATACAAAACAAC
21606066 TTAA
1 TTAA
21606070 TGTAAATACT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (26 bp):
TTAAAATAAATAATATACAAAACAAC
Found at i:21608702 original size:40 final size:40
Alignment explanation
Indices: 21608464--21608688 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
21608454 TTGAATGATG
* * * *
21608464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
21608504 TCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21608544 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21608583 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
21608623 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
21608664 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
21608689 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:21608710 original size:119 final size:119
Alignment explanation
Indices: 21608464--21608721 Score: 267
Period size: 119 Copynumber: 2.2 Consensus size: 119
21608454 TTGAATGATG
* *
21608464 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** ** *
21608529 GTCCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
21608583 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
21608646 TTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTCCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
21608703 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
21608722 TACGTGATTT
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
118 4 0.03
119 80 0.69
120 32 0.28
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:21616337 original size:40 final size:40
Alignment explanation
Indices: 21616099--21616323 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
21616089 TTGAATGATG
* * * *
21616099 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
21616139 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21616179 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21616218 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
21616258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
21616299 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
21616324 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:21616345 original size:119 final size:119
Alignment explanation
Indices: 21616099--21616356 Score: 276
Period size: 119 Copynumber: 2.2 Consensus size: 119
21616089 TTGAATGATG
* *
21616099 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** ** *
21616164 GTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
21616218 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
21616281 TTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
21616338 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
21616357 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
118 4 0.03
119 81 0.69
120 32 0.27
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:21620740 original size:6 final size:6
Alignment explanation
Indices: 21620731--21620757 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21620721 GCAAAATAAT
21620731 AATTAA AATTAA AATTAA AATTAA AAT
1 AATTAA AATTAA AATTAA AATTAA AAT
21620758 ACTTAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAA
Found at i:21627502 original size:7 final size:7
Alignment explanation
Indices: 21627490--21627525 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
21627480 AAAAATTGTT
21627490 ATTAATG
1 ATTAATG
21627497 ATTAATGG
1 ATTAAT-G
*
21627505 AATAATG
1 ATTAATG
21627512 ATTAATG
1 ATTAATG
21627519 ATTAATG
1 ATTAATG
21627526 GACTAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (7 bp):
ATTAATG
Found at i:21627515 original size:22 final size:22
Alignment explanation
Indices: 21627490--21627532 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
21627480 AAAAATTGTT
21627490 ATTAATGATTAATGGAATAATG
1 ATTAATGATTAATGGAATAATG
*
21627512 ATTAATGATTAATGGACTAAT
1 ATTAATGATTAATGGAATAAT
21627533 AAAACTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (22 bp):
ATTAATGATTAATGGAATAATG
Found at i:21628588 original size:44 final size:44
Alignment explanation
Indices: 21628521--21628897 Score: 235
Period size: 44 Copynumber: 8.1 Consensus size: 44
21628511 ATAGTAGAGA
* *
21628521 AGATTAAAGCTAGTAATCTTATCTCCCTGAGATTACAGCGGAGC
1 AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
*
21628565 AGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGC
1 AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
* ** * *
21628609 GGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGC
1 AGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G--GA--GC
* ** * *
21628660 ATTAGATTGAAGCCAAAAATCTTATCTCCTTGAGATTACAGTAGAGC
1 ---AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
*
21628707 AGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGC
1 AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
* ** *
21628751 GGATT-AAAATAAAGT-ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC
1 AGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---C
* ** * * *
21628805 AGATTGAAGCCAAAAATCTTATCTCCCTGAGACTACAGCGAAGC
1 AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
* *
21628849 ATATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGC
1 AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
*
21628893 GGATT
1 AGATT
21628898 AAAATAAAGG
Statistics
Matches: 252, Mismatches: 49, Indels: 64
0.69 0.13 0.18
Matches are distributed among these distances:
43 8 0.03
44 167 0.66
45 5 0.02
47 5 0.02
49 7 0.03
51 4 0.02
53 2 0.01
54 48 0.19
55 6 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGGAGC
Found at i:21628708 original size:142 final size:141
Alignment explanation
Indices: 21628535--21628948 Score: 729
Period size: 142 Copynumber: 2.9 Consensus size: 141
21628525 TAAAGCTAGT
*
21628535 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAG-AGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
21628600 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAG
65 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
21628665 ATTGAAGCCAAA
130 ATTGAAGCCAAA
*
21628677 AATCTTATCTCCTTGAGATTACAGTAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAG-AGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
21628742 CAGTGGAGCGGATTAAAATAAAGTATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
65 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
21628807 ATTGAAGCCAAA
130 ATTGAAGCCAAA
* * *
21628819 AATCTTATCTCCCTGAGACTACAGCGAAGCATATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGAG-AGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
21628884 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAAATCGCATCAG
65 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
21628949 GTCTTATCTC
Statistics
Matches: 260, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 1 0.00
142 259 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (141 bp):
AATCTTATCTCCCTGAGATTACAGAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
TTGAAGCCAAA
Found at i:21631404 original size:28 final size:28
Alignment explanation
Indices: 21631364--21631419 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
21631354 TCGCATTGTA
21631364 CATTGAAATTCCATCGCGCTTTATTCGC
1 CATTGAAATTCCATCGCGCTTTATTCGC
21631392 CATTGAAATTCCATCGCGCTTTATTCGC
1 CATTGAAATTCCATCGCGCTTTATTCGC
21631420 TTAAAAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (28 bp):
CATTGAAATTCCATCGCGCTTTATTCGC
Found at i:21637264 original size:9 final size:9
Alignment explanation
Indices: 21637250--21637274 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21637240 TTGCTCCCTA
21637250 TCTTCCTCC
1 TCTTCCTCC
21637259 TCTTCCTCC
1 TCTTCCTCC
21637268 TCTTCCT
1 TCTTCCT
21637275 TGTAATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (9 bp):
TCTTCCTCC
Found at i:21642113 original size:28 final size:28
Alignment explanation
Indices: 21642050--21642147 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
21642040 ATATTAAGTC
*
21642050 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
21642077 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
21642105 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
21642134 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21642148 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:21643665 original size:1 final size:1
Alignment explanation
Indices: 21643661--21643753 Score: 177
Period size: 1 Copynumber: 93.0 Consensus size: 1
21643651 TTATGACTCG
21643661 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
21643726 TTTTTTTTTTTTTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
21643754 ATGACTCTTT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
1 90 1.00
ACGTcount: A:0.01, C:0.00, G:0.00, T:0.99
Consensus pattern (1 bp):
T
Found at i:21647150 original size:38 final size:39
Alignment explanation
Indices: 21646971--21647218 Score: 285
Period size: 39 Copynumber: 6.5 Consensus size: 39
21646961 CCCTCGCACA
* * * * *
21646971 GCCTTCGGGTCTT-GTCCGGATATGGTCACTAGCAC-AAT
1 GCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAAT
*
21647009 GCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAAT
* *
21647049 GCCTTCGGGGCTTAGCCCGAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
21647088 GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
* * *
21647127 G-CTTCAGGACTTAGCCCGAATTAGTAACTC-AACAAAT
1 GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
* * *
21647164 GCCTTCGGGACTCAGCCCGGATTA-TCACTAGCAC--AT
1 GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
* *
21647200 GTCTTCGGGACTTAACCCG
1 GCCTTCGGGACTTAGCCCG
21647219 TTAGCATCCG
Statistics
Matches: 183, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
36 18 0.10
37 11 0.06
38 59 0.32
39 73 0.40
40 22 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
Found at i:21647181 original size:76 final size:78
Alignment explanation
Indices: 21647006--21647187 Score: 296
Period size: 76 Copynumber: 2.3 Consensus size: 78
21646996 TCACTAGCAC
* * *
21647006 AATGCCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGAAT
1 AATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGAAT
*
21647071 TAGTAACTCGCACA
65 TAGTAACTCGAACA
21647085 AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATG-CTTCAGGACTTAGCCCGAATT
1 AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGAATT
21647149 AGTAACTC-AACA
66 AGTAACTCGAACA
*
21647161 AATGCCTTCGGGACTCAGCCCGGATTA
1 AATGCCTTCGGGACTTAGCCCGGATTA
21647188 TCACTAGCAC
Statistics
Matches: 98, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
76 29 0.30
77 27 0.28
78 18 0.18
79 24 0.24
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGAATT
AGTAACTCGAACA
Found at i:21649276 original size:46 final size:46
Alignment explanation
Indices: 21649209--21649384 Score: 203
Period size: 47 Copynumber: 3.8 Consensus size: 46
21649199 AACCCGTCCC
* * *
21649209 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * *
21649255 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
21649301 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
21649348 TAAGTGAACTCCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACT-CGGACTCAACTCAACGAGTTCGGATG
21649385 CTCAACCATC
Statistics
Matches: 105, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.02
46 43 0.41
47 58 0.55
48 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:21649342 original size:93 final size:94
Alignment explanation
Indices: 21649214--21649385 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 94
21649204 GTCCCTAAGT
* ***
21649214 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACT-CGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCCGGACTCAACTCA
21649278 ACGAGTTCGGATGCCTAGTTACATTTCAC
66 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
21649307 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCCGGACTCAACTCA
21649372 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
21649386 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 46 0.63
94 27 0.37
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:21651447 original size:27 final size:27
Alignment explanation
Indices: 21651392--21651447 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
21651382 CCCAGAGTCA
*
21651392 TTTACCACATAAGGGCAAAACAATCAT
1 TTTACCACATAAGGGCAAAACAATAAT
* * * *
21651419 TTTACCCCATAAGGGGAAAATAGTAAT
1 TTTACCACATAAGGGCAAAACAATAAT
21651446 TT
1 TT
21651448 ATAATTGGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (27 bp):
TTTACCACATAAGGGCAAAACAATAAT
Found at i:21651697 original size:17 final size:18
Alignment explanation
Indices: 21651675--21651709 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
21651665 TTTACCCGTG
21651675 TGGGGCCCATA-AGCCCA
1 TGGGGCCCATACAGCCCA
21651692 TGGGGCCCATACAGCCCA
1 TGGGGCCCATACAGCCCA
21651710 GTCAACCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.23, C:0.37, G:0.29, T:0.11
Consensus pattern (18 bp):
TGGGGCCCATACAGCCCA
Found at i:21669283 original size:35 final size:35
Alignment explanation
Indices: 21669244--21669359 Score: 97
Period size: 35 Copynumber: 3.2 Consensus size: 35
21669234 CGGTTTATCC
*
21669244 GACTAGCGCTGGGTGCAACTTTCATCAGTTTAACT
1 GACTAGAGCTGGGTGCAACTTTCATCAGTTTAACT
* ** * * * *
21669279 GACTAGTGCTGGGCACATCTTTATACTCATCGGTTTACCC
1 GACTAGAGCTGGGTGCAAC--T-T--TCATCAGTTTAACT
* *
21669319 GACTAGAGCTGGTTGCAACTTTCATTAGTTTAACT
1 GACTAGAGCTGGGTGCAACTTTCATCAGTTTAACT
21669354 GACTAG
1 GACTAG
21669360 TGTTGGGCAC
Statistics
Matches: 60, Mismatches: 16, Indels: 10
0.70 0.19 0.12
Matches are distributed among these distances:
35 31 0.52
37 2 0.03
38 2 0.03
40 25 0.42
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (35 bp):
GACTAGAGCTGGGTGCAACTTTCATCAGTTTAACT
Found at i:21669458 original size:75 final size:75
Alignment explanation
Indices: 21669239--21669486 Score: 302
Period size: 75 Copynumber: 3.3 Consensus size: 75
21669229 ATTGTCGGTT
* *
21669239 TATCCGACTAGCGCTGGGTGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACATC-TT-TA
1 TATCCGACTAGTGCTGGGCGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACATCATTATA
* * *
21669302 TACTCATCGGTT
66 TA-T-GTCAGTC
* * ** * * *
21669314 TACCCGACTAGAGCTGGTTGCAACTTTCATTAGTTTAACTGACTAGTGTTGGGCACATCATTATG
1 TATCCGACTAGTGCTGGGCGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACATCATTATA
21669379 TATGTCAGTC
66 TATGTCAGTC
* ** *
21669389 TATTCGACTAGTGCTGGGCGCAACCGTCATCAGTTTAACTGAGTAGTGCTGGGCACATCATTATA
1 TATCCGACTAGTGCTGGGCGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACATCATTATA
21669454 TATGTCAGTC
66 TATGTCAGTC
* *
21669464 TATCCAACTAGTGCTGCGCGCAA
1 TATCCGACTAGTGCTGGGCGCAA
21669487 AACTTGATTA
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
75 142 0.96
76 3 0.02
77 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (75 bp):
TATCCGACTAGTGCTGGGCGCAACTTTCATCAGTTTAACTGACTAGTGCTGGGCACATCATTATA
TATGTCAGTC
Found at i:21677226 original size:4 final size:4
Alignment explanation
Indices: 21677209--21677240 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
21677199 AATATTAAGG
21677209 TTAA TTATA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTA-A TTAA TTAA TTAA TTAA TTAA TTA
21677241 TTATTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
TTAA
Found at i:21677453 original size:26 final size:26
Alignment explanation
Indices: 21677424--21677474 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21677414 TCTAATTATT
*
21677424 ATAATTAAA-AATATAATATTTAAAAA
1 ATAATTAAATAATA-AATATGTAAAAA
21677450 ATAATTAAATAATAAATATGTAAAA
1 ATAATTAAATAATAAATATGTAAAA
21677475 TCAAAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
ATAATTAAATAATAAATATGTAAAAA
Done.