Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 80 of 213
Found at i:21973924 original size:20 final size:20
Alignment explanation
Indices: 21973895--21973948 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
21973885 AAATCAAGAT
*
21973895 AAAATTATTTTAACCAAGTC
1 AAAATCATTTTAACCAAGTC
* * ** *
21973915 ATAATGATTTCGACCAAGTT
1 AAAATCATTTTAACCAAGTC
21973935 AAAATCATTTTAAC
1 AAAATCATTTTAAC
21973949 ACATCAAAAT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (20 bp):
AAAATCATTTTAACCAAGTC
Found at i:21973973 original size:40 final size:40
Alignment explanation
Indices: 21973889--21973973 Score: 93
Period size: 40 Copynumber: 2.1 Consensus size: 40
21973879 ATTTTAAAAT
* * * * *
21973889 CAAGATAAAATTATTTTAACCAAGTCATAATGATTTCGAC
1 CAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTCAAA
21973929 CAAGTTAAAATCATTTTAA-CACA-TCAAAATGATTTCCAAA
1 CAAGTTAAAATCATTTTAACCA-AGTCAAAATGATTT-CAAA
21973969 CAAGT
1 CAAGT
21973974 CAGAATTACT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
39 13 0.34
40 25 0.66
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (40 bp):
CAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTCAAA
Found at i:21983906 original size:33 final size:33
Alignment explanation
Indices: 21983864--21983953 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
21983854 TCATGATGCC
* * * *
21983864 AAGCATTATTATGGGGATGGACCCTTCCTATTT
1 AAGCATTATTATCGAGATGAACCCGTCCTATTT
*
21983897 AAGCATTATTATCGAGATGAATCCGTCCTATTT
1 AAGCATTATTATCGAGATGAACCCGTCCTATTT
*
21983930 AAGCATTATTA-CTAGGATGAACCC
1 AAGCATTATTATCGA-GATGAACCC
21983954 TTCATGATGC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
32 2 0.04
33 47 0.96
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (33 bp):
AAGCATTATTATCGAGATGAACCCGTCCTATTT
Found at i:21991841 original size:15 final size:15
Alignment explanation
Indices: 21991821--21991857 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
21991811 CTAACGAATG
*
21991821 GAATGATCCTGGTCT
1 GAATGATCATGGTCT
21991836 GAATGATCATGGTCT
1 GAATGATCATGGTCT
*
21991851 AAATGAT
1 GAATGAT
21991858 GATCAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (15 bp):
GAATGATCATGGTCT
Found at i:21993991 original size:15 final size:15
Alignment explanation
Indices: 21993971--21994006 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
21993961 TAGGGAAGGG
*
21993971 AATGATCCTGGTCTA
1 AATGATCATGGTCTA
*
21993986 AATGATCATGGTCTC
1 AATGATCATGGTCTA
21994001 AATGAT
1 AATGAT
21994007 GATCCAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (15 bp):
AATGATCATGGTCTA
Found at i:21996514 original size:27 final size:27
Alignment explanation
Indices: 21996484--21996574 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
21996474 TATCTTGTCT
**
21996484 GCCTTTGTGGTGTACTCTGTATAAATA
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
21996511 GCCTTTGTGGCATACTCTGTATGAATT
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
21996538 GCCTTTGTGGCATACTCTATATAGATA
1 GCCTTTGTGGCATACTCTGTATAAATA
* *
21996565 ACTTTTGTGG
1 GCCTTTGTGG
21996575 TGAACTCTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (27 bp):
GCCTTTGTGGCATACTCTGTATAAATA
Found at i:21996554 original size:54 final size:54
Alignment explanation
Indices: 21996483--21996628 Score: 134
Period size: 54 Copynumber: 2.7 Consensus size: 54
21996473 GTATCTTGTC
** * * *
21996483 TGCCTTTGTGGTGTACTCTGTATAAATAGCCTTTGTGG-CATACTCTGTA-TGAAT
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCA-ACTCT-CACTGAAT
* * * *
21996537 TGCCTTTGTGGCATACTCTATATAGATAACTTTTGTGGTGAACTCTCACTGGAT
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCAACTCTCACTGAAT
* * * * *
21996591 TTCCTTTGTGGCATACTCTAAATAGATCACCTTGGTGG
1 TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGG
21996629 CATACCTTAC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 74 0.97
55 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (54 bp):
TGCCTTTGTGGCATACTCTATATAAATAACCTTTGTGGTCAACTCTCACTGAAT
Found at i:21996608 original size:27 final size:25
Alignment explanation
Indices: 21996512--21996633 Score: 66
Period size: 27 Copynumber: 4.6 Consensus size: 25
21996502 GTATAAATAG
* *
21996512 CCTTTGTGGCATACTCTGTATGAATTG
1 CCTTTGTGGCATACTC--TATGGATTA
* *
21996539 CCTTTGTGGCATACTCTATATAGATAA
1 CCTTTGTGGCATACTC--TATGGATTA
* * *
21996566 CTTTTGTGGTGA-ACTCTCACTGGATTT
1 CCTTTGTGG-CATACTCT-A-TGGATTA
* *
21996593 CCTTTGTGGCATACTCTAAATAGATCA
1 CCTTTGTGGCATACTCT--ATGGATTA
*
21996620 CCTTGGTGGCATAC
1 CCTTTGTGGCATAC
21996634 CTTACACGAT
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 68 0.93
28 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (25 bp):
CCTTTGTGGCATACTCTATGGATTA
Found at i:22012224 original size:26 final size:26
Alignment explanation
Indices: 22012171--22012224 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
22012161 TCAGTACAGT
* * **
22012171 GTGGGCCTTAGCCCATTATGGTAACA
1 GTGGGCCTAAGCCCAATACAGTAACA
*
22012197 GTGGGCCTAAGCCCAATACAGTATCA
1 GTGGGCCTAAGCCCAATACAGTAACA
22012223 GT
1 GT
22012225 ATGGTGCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
GTGGGCCTAAGCCCAATACAGTAACA
Found at i:22012418 original size:27 final size:27
Alignment explanation
Indices: 22012371--22012439 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
22012361 CAGCAGAGCT
22012371 ACCAGT-ACAAT-ATATGTGGCAAAGCA
1 ACCAGTAACAATAAT-TGTGGCAAAGCA
* *
22012397 ACCAGTAACAGTAATTGTGGCAAAGCC
1 ACCAGTAACAATAATTGTGGCAAAGCA
*
22012424 ACCAGTATCAATAATT
1 ACCAGTAACAATAATT
22012440 CCTCCATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.16
27 29 0.78
28 2 0.05
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
ACCAGTAACAATAATTGTGGCAAAGCA
Found at i:22012675 original size:26 final size:26
Alignment explanation
Indices: 22012644--22012729 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
22012634 ACCCTTCGGG
*
22012644 GATAATTTACCGATTGAGGGTATTTT
1 GATAATTTACCGATTGAGGGTATTTC
* *
22012670 GGTAATTTA-CGTATTGAGAGTATTTC
1 GATAATTTACCG-ATTGAGGGTATTTC
*
22012696 GATAATTTACCCATTGAGGGTATTTC
1 GATAATTTACCGATTGAGGGTATTTC
22012722 GATAATTT
1 GATAATTT
22012730 GGGCCCATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.04
26 49 0.94
27 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (26 bp):
GATAATTTACCGATTGAGGGTATTTC
Found at i:22019257 original size:27 final size:27
Alignment explanation
Indices: 22019202--22019263 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
22019192 AAAGAAAATG
*
22019202 AAAATACCAAAGGCCTTTTTAGTCAAAA
1 AAAATACCAAAGGCCTTATTAG-CAAAA
*
22019230 AAAATACCAAAGGCCTTATTA-CATAA
1 AAAATACCAAAGGCCTTATTAGCAAAA
*
22019256 AAATTACC
1 AAAATACC
22019264 CCAAAGTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 11 0.35
28 20 0.65
ACGTcount: A:0.48, C:0.19, G:0.08, T:0.24
Consensus pattern (27 bp):
AAAATACCAAAGGCCTTATTAGCAAAA
Found at i:22019888 original size:27 final size:27
Alignment explanation
Indices: 22019858--22019909 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
22019848 TCATCTCCTA
*
22019858 GGGGTATAGCAGTCATTCTACCCTTTG
1 GGGGTATAGCAGTAATTCTACCCTTTG
** *
22019885 GGGGTATTTCAGTAATTTTACCCTT
1 GGGGTATAGCAGTAATTCTACCCTT
22019910 CGAGGGTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGGTATAGCAGTAATTCTACCCTTTG
Found at i:22019940 original size:26 final size:26
Alignment explanation
Indices: 22019886--22020082 Score: 277
Period size: 26 Copynumber: 7.5 Consensus size: 26
22019876 TACCCTTTGG
** *
22019886 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTTGGTAA-TTTACCCATCGA
* * *
22019913 GGGTTTTTTGCTAATTTACCCATTGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
22019939 GGTTATTTTGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
22019965 GGGTATTTTGCTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
* *
22019991 GGGTATCTTGGTAATTTACCCATTGA
1 GGGTATTTTGGTAATTTACCCATCGA
22020017 GGGTATTTTGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
22020043 GGGTATTTCGGTAATTTACCCATCGA
1 GGGTATTTTGGTAATTTACCCATCGA
*
22020069 GGGTATTTCGGTAA
1 GGGTATTTTGGTAA
22020083 CTTAGACCCA
Statistics
Matches: 152, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 142 0.93
27 10 0.07
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTACCCATCGA
Found at i:22025971 original size:24 final size:24
Alignment explanation
Indices: 22025906--22026024 Score: 161
Period size: 25 Copynumber: 4.9 Consensus size: 24
22025896 GCATCCCCGA
22025906 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
22025930 AACAAATGGAGAA-TTTGAAAAGGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
22025955 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
22025979 AACAAATGGAGAA-GTTGAAAATGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
*
22026004 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
22026025 TATAGCAAGG
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
23 4 0.05
24 36 0.43
25 40 0.48
26 4 0.05
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.18
Consensus pattern (24 bp):
AACAATGGAAAGGTTGAAAAGGAT
Found at i:22025978 original size:49 final size:49
Alignment explanation
Indices: 22025906--22026024 Score: 211
Period size: 49 Copynumber: 2.4 Consensus size: 49
22025896 GCATCCCCGA
*
22025906 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAATTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
*
22025955 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAATGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
*
22026004 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
22026025 TATAGCAAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.52, C:0.04, G:0.26, T:0.18
Consensus pattern (49 bp):
AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
Found at i:22027774 original size:51 final size:49
Alignment explanation
Indices: 22027642--22027834 Score: 215
Period size: 51 Copynumber: 3.8 Consensus size: 49
22027632 ATTGTTATCA
* * * * *
22027642 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAC-C
* * *
22027692 TTCAGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CC
* * *
22027742 TTCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATC
1 TT-CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AACC
* * *
22027793 TATCGATACACATAGTAGTCTGCACTTAGTACTACACACGTG
1 T-TCGGTACACATAGTAGCCTGCACATAGTACTACACACGTG
22027835 TTTATAGGCA
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 44 0.36
51 77 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACC
Found at i:22029348 original size:51 final size:51
Alignment explanation
Indices: 22029272--22029455 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
22029262 TATAAACACG
* * * *
22029272 TGTGTAGTACTAAGTGCAAGCTACTACGTGTA-TGGTTA-GATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AAGGAT-ATGGTCACA
* * * *
22029323 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
** * * * * *
22029374 TGTGTAGTACTATGTGCAGGCTACTAATTGAACCGGAA-AATTTGATCACC
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
* *
22029424 TGTGTAGTACTATGTGAAGACTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
22029456 TCGAATGATA
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
50 35 0.32
51 72 0.65
52 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGATATGGTCACA
Found at i:22036332 original size:23 final size:23
Alignment explanation
Indices: 22036301--22036351 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
22036291 ACCTACTTTC
* *
22036301 TTACTATAGTAATTTTCGGGGTA
1 TTACAATAGTAATTTTCGGGATA
22036324 TTACAATAGTAATTTTCGGGATA
1 TTACAATAGTAATTTTCGGGATA
22036347 TTACA
1 TTACA
22036352 GCCTTAGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (23 bp):
TTACAATAGTAATTTTCGGGATA
Found at i:22040606 original size:50 final size:51
Alignment explanation
Indices: 22040541--22040681 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 51
22040531 TTATTATCAT
* * *
22040541 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AA-CTTT
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATC-TA
* * * *
22040591 TCGGTTCACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTA
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATCTA
* *
22040642 TCGATACACGTAGTAGTCTGCACTTAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
22040682 TTTATAGGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
50 39 0.51
51 37 0.48
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (51 bp):
TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAATCTA
Found at i:22040664 original size:51 final size:51
Alignment explanation
Indices: 22040508--22040677 Score: 184
Period size: 51 Copynumber: 3.4 Consensus size: 51
22040498 TTCGGTGGTT
* * * *
22040508 TGCACATAGTACCACCCATGTAATTATTATC-ATTCGATACACGTAGTAGCC
1 TGCACATAGTACTACACATGTGATCATTATCTA-TCGATACACGTAGTAGCC
* * * * * *
22040559 TTCACATAGTACTACACACGTGATCA--AACTTTTCGGTTCACGTAGTAGCC
1 TGCACATAGTACTACACATGTGATCATTATC-TATCGATACACGTAGTAGCC
* *
22040609 TGCACATAGTACTACACATGTGACCATTATCTATCGATACACGTAGTAGTC
1 TGCACATAGTACTACACATGTGATCATTATCTATCGATACACGTAGTAGCC
*
22040660 TGCACTTAGTACTACACA
1 TGCACATAGTACTACACA
22040678 CGTGTTTATA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.41
51 53 0.55
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (51 bp):
TGCACATAGTACTACACATGTGATCATTATCTATCGATACACGTAGTAGCC
Found at i:22046225 original size:12 final size:11
Alignment explanation
Indices: 22046208--22046254 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
22046198 TTAAGTTAAA
*
22046208 TAAAATATATGT
1 TAAAAT-TAAGT
22046220 TAAAATTAAGT
1 TAAAATTAAGT
22046231 TAATAATTAAGT
1 TAA-AATTAAGT
22046243 TAAAATGTAAGT
1 TAAAAT-TAAGT
22046255 ACATAAAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (11 bp):
TAAAATTAAGT
Found at i:22047122 original size:45 final size:44
Alignment explanation
Indices: 22047028--22047145 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 44
22047018 CATTGTTTGA
* * * *
22047028 GAAAAGGAAAAGACCATTATTGAAAGAAATCATGGTATTATAATC
1 GAAAA-GAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
* *
22047073 GAAAAGAAAAATACCATGATTGAAAGATATCATGGCACTA-AATTT
1 GAAAAG-AAAAGACCATGATTGAAAGATATCATGGCACTATAA-TC
* * *
22047118 GAAAAGGAAAGACCAAGGTTGAAAGATA
1 GAAAAGAAAAGACCATGATTGAAAGATA
22047146 CTATGACATC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
44 21 0.34
45 40 0.66
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.21
Consensus pattern (44 bp):
GAAAAGAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
Found at i:22049731 original size:20 final size:20
Alignment explanation
Indices: 22049706--22049744 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22049696 TACTTTCTTA
22049706 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
22049726 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
22049745 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:22049733 original size:12 final size:12
Alignment explanation
Indices: 22049695--22049745 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
22049685 ATCATGATCT
* *
22049695 TTACTTTCTTAT
1 TTACTTGCTTAC
*
22049707 TTACTTACTCT-C
1 TTACTTGCT-TAC
*
22049719 TTACTTGTTTAC
1 TTACTTGCTTAC
22049731 TTACTTGCTTAC
1 TTACTTGCTTAC
22049743 TTA
1 TTA
22049746 AATAACTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.57
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:22057544 original size:62 final size:62
Alignment explanation
Indices: 22057478--22057594 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 62
22057468 ACACACGTCT
* *
22057478 GTGTCCCTACCCGTGTGG-CTTTATACCACGAACAGTGAGGTACACGGCCTGGGCATACACCC
1 GTGTCCCTACCCGTGTGGTC-TTATACCACAAACAGTGAGGTACAAGGCCTGGGCATACACCC
** * *
22057540 GTGTCCCTGGCCGTGTGGTCTTGTACCACAAACAGTGAGTTACAAGGCCTGGGCA
1 GTGTCCCTACCCGTGTGGTCTTATACCACAAACAGTGAGGTACAAGGCCTGGGCA
22057595 CATGCCCCTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
62 47 0.98
63 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (62 bp):
GTGTCCCTACCCGTGTGGTCTTATACCACAAACAGTGAGGTACAAGGCCTGGGCATACACCC
Found at i:22057607 original size:62 final size:62
Alignment explanation
Indices: 22057479--22057617 Score: 163
Period size: 62 Copynumber: 2.2 Consensus size: 62
22057469 CACACGTCTG
** * * * *
22057479 TGTCCCTACCCGTGTGGCTTTATACCACGAACAGTGAGGTACACGGCCTGGGCATACACCCG
1 TGTCCCTGGCCGTGTGGCTTTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
* * **
22057541 TGTCCCTGGCCGTGTGG-TCTTGTACCACAAACAGTGAGTTACAAGGCCTGGGCACATGCCCC
1 TGTCCCTGGCCGTGTGGCT-TTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
*
22057603 TGTCCCTGGCTGTGT
1 TGTCCCTGGCCGTGT
22057618 CAACTCTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 1 0.02
62 64 0.98
ACGTcount: A:0.18, C:0.31, G:0.27, T:0.24
Consensus pattern (62 bp):
TGTCCCTGGCCGTGTGGCTTTATACCACAAACAGTGAGGTACAAGGCCTGGGCACACACCCC
Found at i:22061040 original size:19 final size:20
Alignment explanation
Indices: 22060992--22061054 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
22060982 ATTCATCATA
22060992 TTAA-TATTTTTAACATAAT
1 TTAATTATTTTTAACATAAT
22061011 TTAATTA-TTTTATA-AT-AT
1 TTAATTATTTTTA-ACATAAT
*
22061029 TTAATTATTTTTCGACAATAAT
1 TTAATTATTTTT-AAC-ATAAT
22061051 TTAA
1 TTAA
22061055 CCGAAATAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
18 9 0.25
19 16 0.44
20 3 0.08
21 2 0.06
22 6 0.17
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAATTATTTTTAACATAAT
Found at i:22061328 original size:21 final size:21
Alignment explanation
Indices: 22061304--22061344 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22061294 TCATAATAGA
22061304 ATTCAATAACATA-TCACATAT
1 ATTCAAT-ACATACTCACATAT
*
22061325 ATTCCATACATACTCACATA
1 ATTCAATACATACTCACATA
22061345 ATTTCCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCAATACATACTCACATAT
Found at i:22061350 original size:21 final size:20
Alignment explanation
Indices: 22061312--22061353 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
22061302 GAATTCAATA
22061312 ACATATCACATATATTCCAT
1 ACATATCACATATATTCCAT
22061332 ACATACTCACATA-ATTTCCAT
1 ACATA-TCACATATA-TTCCAT
22061353 A
1 A
22061354 GCACTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATATCACATATATTCCAT
Found at i:22065237 original size:111 final size:113
Alignment explanation
Indices: 22065059--22065285 Score: 422
Period size: 111 Copynumber: 2.0 Consensus size: 113
22065049 CGCAAAAAAA
22065059 AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACA
1 AAATCATGCATTATATATGA-ATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACA
22065124 TAGCTAAGTTATTGAAAGAAAATAATTA-TTTTTTCTCAAATCCGTATT
65 TAGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
*
22065172 AAATCATGCATTATCTATG-ATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
1 AAATCATGCATTATATATGAATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
22065236 AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
66 AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
22065284 AA
1 AA
22065286 TAATTTATTA
Statistics
Matches: 112, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
111 72 0.64
112 22 0.20
113 18 0.16
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (113 bp):
AAATCATGCATTATATATGAATATTTTTTTGTCATATATAATTTATGACATGATATTTCAGACAT
AGCTAAGTTATTGAAAGAAAATAATTATTTTTTTCTCAAATCCGTATT
Found at i:22067011 original size:23 final size:22
Alignment explanation
Indices: 22066967--22067011 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
22066957 GATAAAAACT
*
22066967 AAACCCCAAAATTTGAAAACAA
1 AAACCCCAAAACTTGAAAACAA
22066989 AAACCCTCAAAACTT-AAACACAA
1 AAACCC-CAAAACTTGAAA-ACAA
22067012 TATTATCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (22 bp):
AAACCCCAAAACTTGAAAACAA
Found at i:22067940 original size:33 final size:33
Alignment explanation
Indices: 22067885--22067957 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
22067875 TTGTAAAAAA
22067885 TATTTTTAAAATTAAAATTAAATTTTGTATTATT
1 TATTTTTAAAA-TAAAATTAAATTTTGTATTATT
*
22067919 TATTTTTACAAA-AAAATTAAATTTTTTATTATT
1 TATTTTTA-AAATAAAATTAAATTTTGTATTATT
22067952 TATTTT
1 TATTTT
22067958 GAATTTGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
33 26 0.70
34 8 0.22
35 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (33 bp):
TATTTTTAAAATAAAATTAAATTTTGTATTATT
Found at i:22068710 original size:16 final size:16
Alignment explanation
Indices: 22068667--22068710 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22068657 GAAATTTAAT
*
22068667 TATTTTATTGAAATAA
1 TATTTTATTTAAATAA
*
22068683 TATTTTAATTAAGATAA
1 TATTTTATTTAA-ATAA
22068700 T-TTTTATTTAA
1 TATTTTATTTAA
22068711 TAAATGGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TATTTTATTTAAATAA
Found at i:22073207 original size:17 final size:17
Alignment explanation
Indices: 22073185--22073217 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22073175 TACACTAATG
*
22073185 AATACAAATAATCAATT
1 AATACAAATAAGCAATT
22073202 AATACAAATAAGCAAT
1 AATACAAATAAGCAAT
22073218 ACAATACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.12, G:0.03, T:0.24
Consensus pattern (17 bp):
AATACAAATAAGCAATT
Found at i:22073470 original size:23 final size:23
Alignment explanation
Indices: 22073427--22073472 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22073417 GAAAAAGAAT
*
22073427 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
22073450 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
22073473 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:22075020 original size:44 final size:44
Alignment explanation
Indices: 22074966--22075089 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
22074956 GATTCATTAT
* ** *
22074966 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTAATGG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
*
22075010 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
* * * *
22075054 CTTCAATCTGCTTCACTGTAACTTTAGGAAGATAAG
1 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAG
22075090 ATCCGTCATA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAATGG
Found at i:22075365 original size:44 final size:44
Alignment explanation
Indices: 22075315--22075660 Score: 140
Period size: 44 Copynumber: 7.4 Consensus size: 44
22075305 GCTCCGATGA
22075315 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
* * * * * * * *
22075359 AACTTCAAGAAGATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGC
1 AACTTCAGGGAGAT--AA---GGC-----TGGTGGCTTCAATCTGTTTCACTGC
* * * * * * ** * *
22075413 AACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTACTCCGCTGC
1 AACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTGTTTCACTGC
*
22075458 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCT-TCTTCACTAC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGT-TTCACTGC
* ** * *
22075502 AACTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATG-TTCTACTGC
1 AACTTCAGGGAGATAAG----G-C-T--GGTG--GCTTCAATCTGTTTC-ACTGC
* * * * * * * *
22075556 AACTTCAGAGAAATAAGATCTGCTGTCTTCAGTCTGTTCCGCT-C
1 AACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTGTTTCACTGC
* *
22075600 AACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGC
1 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
*
22075644 AACTTCAGGAAGATAAG
1 AACTTCAGGGAGATAAG
22075661 ATCCGCCATA
Statistics
Matches: 214, Mismatches: 62, Indels: 52
0.65 0.19 0.16
Matches are distributed among these distances:
43 18 0.08
44 76 0.36
45 41 0.19
46 4 0.02
47 2 0.01
48 1 0.00
49 5 0.02
50 3 0.01
52 4 0.02
53 3 0.01
54 57 0.27
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGC
Found at i:22075474 original size:45 final size:45
Alignment explanation
Indices: 22075393--22076095 Score: 234
Period size: 44 Copynumber: 15.0 Consensus size: 45
22075383 ATAATTTGTA
* * *
22075393 GCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * * *
22075438 TCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * *
22075482 GCTTCAATCTTCTTCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------TG
* * ** * * * *
22075534 AAGCTTTAATATGTTCTACTGCAACTTCAGAGAAATAAGATCTGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * ** * * * * *
22075581 TCTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * *
22075624 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTAG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------T-G
* * ** * * * *
22075677 AGCTTTAATTTGTTCCACTACAACTTCAGGGAAATAATATCCCCTG
1 -GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * ** * * * * *
22075723 TCTTCAGTCTGCTCCGTTGTAACTTTAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * *
22075767 GCTTCAATCTTCTTCACTGCAACTTTAGGAAGATAAGATTCGCCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCG-C------TG
** * ** * *
22075819 TATATTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATCCGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * *
22075866 TCTTCAGTCTACTCCGA-TGCAACTTCAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTACTCC-ACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * *
22075910 GCTTCAATCTACTTCACTGCAACTTCAAGAAGATAAGATCCATCATAATTTG
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCC-GC------TG
* * *
22075962 TAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCTG
1 --GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
* * * * * *
22076009 TCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAG-GCTAG-TA
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATC-CGCTG
* * * * *
22076053 GCTTCAATCTTCTTCACTACAACTTCAGGAAGAGAAGATCCGC
1 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGC
22076096 CATAATTTGT
Statistics
Matches: 468, Mismatches: 144, Indels: 92
0.66 0.20 0.13
Matches are distributed among these distances:
43 19 0.04
44 163 0.35
45 135 0.29
46 2 0.00
47 7 0.01
52 7 0.01
53 5 0.01
54 130 0.28
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATCCGCTG
Found at i:22076064 original size:571 final size:571
Alignment explanation
Indices: 22074982--22076310 Score: 2182
Period size: 571 Copynumber: 2.3 Consensus size: 571
22074972 TCTGCTCCGT
* * * * * * * *
22074982 TGCAACTTCAGGGAGATAAG-GCTAATGGCTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTAA-GGAGATAAG
* * *
22075046 GCTAGTGGCTTCAATCTGCTTCACTGTAACTTTAGGAAGATAAGATCCGTCATAATTTAGAGCTT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTT
* * *
22075111 TAATTTGTTCCACT-CTAACTTCAGAGAAATAAGATCCGCTGTCTTTAGTCTGCTCCGTTGTAAC
130 TAATTTGTTCCACTAC-AACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAAC
*
22075175 TTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGTAACTTCAGGAAGATAAGATCCGCC
194 TTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCC
*
22075240 ATAATTTGTATATTTAATCTATTCCACTGTAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCT
259 ATAATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCT
* **
22075305 GCTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGCAACTTCAAGAA
324 ACTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAA
*
22075370 GATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCG
389 GATAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCG
* *
22075435 CTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACT
454 CTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACT
* *
22075500 ACAACTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATGTTCTAC
519 ACAACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
*
22075553 TGCAACTTCAGAGAAATAAGATCTGCTGTCTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTT-AAGGAGATAAG
*
22075617 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTAGAGCTT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTT
*
22075682 TAATTTGTTCCACTACAACTTCAGGGAAATAATATCCCCTGTCTTCAGTCTGCTCCGTTGTAACT
130 TAATTTGTTCCACTACAACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAACT
* * *
22075747 TTAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTGCAACTTTAGGAAGATAAGATTCGCCA
195 TTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCCA
*
22075812 TAATTTGTATATTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTA
260 TAATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTA
*
22075877 CTCCGATGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAG
325 CTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAG
* *
22075942 ATAAGATCCATCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGC
390 ATAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGC
22076007 TGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTA
455 TGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTA
*
22076072 CAACTTCAGGAAGAGAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCAC
520 CAACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
*
22076124 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAG
1 TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAAC-TTAAGGAGATAAG
* *
22076189 GCTGGTGGCTTCAATCTGCTTCACTGCCACTTTAGGAAGATAAGATCGGCCATAATTT-GTAGCT
65 GCTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAG-AGCT
* * * * *
22076253 TTAATCTGCTCCACTACAATTTTAGGGAAAT-ATGATCCGTTGTCTTCAGTCTGCTCCG
129 TTAATTTGTTCCACTACAACTTCAGGGAAATAAT-ATCCGCTGTCTTCAGTCTGCTCCG
22076311 CTACAACTTC
Statistics
Matches: 705, Mismatches: 46, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
571 560 0.79
572 143 0.20
573 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (571 bp):
TGCAACTTCAGAGAAATAAGATCTGATGTCTTCAGTCTGTTCCGCTGCAACTTAAGGAGATAAGG
CTGGTGGCTTCAATCTGCTTCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTAGAGCTTT
AATTTGTTCCACTACAACTTCAGGGAAATAATATCCGCTGTCTTCAGTCTGCTCCGTTGTAACTT
TAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGCAACTTCAGGAAGATAAGATCCGCCAT
AATTTGTATATTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATCCGCTGTCTTCAGTCTAC
TCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAAGAAGA
TAAAATCCACCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATCCGCT
GTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTAC
AACTTCAGGAAGAGAAGATCCGCCATAATTTGAAGCTTTAATATGTTCCAC
Found at i:22076188 original size:45 final size:45
Alignment explanation
Indices: 22076107--22076235 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 45
22076097 ATAATTTGTA
* * * * *
22076107 GCTTTAATATGTTCCACTGCAACTTCAGAGAAATAAGATCTGATG
1 GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
* * * * *
22076152 TCTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
* *
22076196 GCTTCAATCTGCTT-CACTGCCACTTTAGGAAGATAAGATC
1 GCTTCAATCTG-TTCCACTGCAACTTTAGGGAGATAAGATC
22076236 GGCCATAATT
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
44 34 0.52
45 32 0.48
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (45 bp):
GCTTCAATCTGTTCCACTGCAACTTTAGGGAGATAAGATCTGATG
Found at i:22076375 original size:143 final size:143
Alignment explanation
Indices: 22075010--22076331 Score: 1869
Period size: 143 Copynumber: 9.3 Consensus size: 143
22075000 AGGCTAATGG
* * * * *
22075010 CTTCAATCTGCTCCACTGCAACTTAAGGGAGATAAGGCTAGTGGCTTCAATCTGCTTCACTGTAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * *
22075075 CTTTAGGAAGATAAGATCCGTCATAATTTAG-AGCTTTAATTTGTTCCACT-CTAACTTCAGAGA
66 CTTCAGGAAGATAAGATCCGCCATAATTT-GTAGCTTTAATCTGTTCCACTGC-AACTTCAGGGA
22075138 AATAAGATCCGCTGT
129 AATAAGATCCGCTGT
* * * * * * *
22075153 CTTTAGTCTGCTCCGTTGTAACTTTAGGGAGATAAGGCTGGTAGCTTCAATCTTCTTCACTGTAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
** * * *
22075218 CTTCAGGAAGATAAGATCCGCCATAATTTGTATATTTAATCTATTCCACTGTAACTTCAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
22075283 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
22075296 CTTCAGTCTGCTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * *
22075361 CTTCAAGAAGATAAAATCCGCCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
22075426 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
22075439 CTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * *
22075504 CTTCAGGAAGATAAGATCCGCCATAATTTGAAGCTTTAATATGTTCTACTGCAACTTCAGAGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
*
22075569 TAAGATCTGCTGT
131 TAAGATCCGCTGT
* *
22075582 CTTCAGTCTGTTCCGCT-CAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* *
22075646 CTTCAGGAAGATAAGATCCGCCATAATTTAG-AGCTTTAATTTGTTCCACTACAACTTCAGGGAA
66 CTTCAGGAAGATAAGATCCGCCATAATTT-GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAA
* *
22075710 ATAATATCCCCTGT
130 ATAAGATCCGCTGT
* * * *
22075724 CTTCAGTCTGCTCCGTTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * ** *
22075789 CTTTAGGAAGATAAGATTCGCCATAATTTGTATATTTAATCTGTTCCACTGCAACTTCAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
22075854 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * *
22075867 CTTCAGTCTACTCCGATGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* ** *
22075932 CTTCAAGAAGATAAGATCCATCATAATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
22075997 TAAGATCCGCTGT
131 TAAGATCCGCTGT
* * * * *
22076010 CTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTAGTAGCTTCAATCTTCTTCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * *
22076075 CTTCAGGAAGAGAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCACTGCAACTTCAGAGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
* *
22076140 TAAGATCTGATGT
131 TAAGATCCGCTGT
* * *
22076153 CTTCAGTCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCCA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * * * *
22076218 CTTTAGGAAGATAAGATCGGCCATAATTTGTAGCTTTAATCTGCTCCACTACAATTTTAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
* *
22076283 TATGATCCGTTGT
131 TAAGATCCGCTGT
* *
22076296 CTTCAGTCTGCTCCGCTACAACTTCAGGGAGGTAAG
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
22076332 ACTTGTATCT
Statistics
Matches: 1049, Mismatches: 125, Indels: 10
0.89 0.11 0.01
Matches are distributed among these distances:
142 130 0.12
143 919 0.88
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (143 bp):
CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAA
TAAGATCCGCTGT
Found at i:22078639 original size:21 final size:22
Alignment explanation
Indices: 22078615--22078655 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22078605 CGCCTTGGCC
22078615 TCTCATTTT-TTTCCTTTTTCT
1 TCTCATTTTCTTTCCTTTTTCT
* *
22078636 TCTCTTTTTCTTTTCTTTTT
1 TCTCATTTTCTTTCCTTTTT
22078656 TAATCATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (22 bp):
TCTCATTTTCTTTCCTTTTTCT
Found at i:22078644 original size:11 final size:11
Alignment explanation
Indices: 22078615--22078655 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
22078605 CGCCTTGGCC
22078615 TCTCATTTTT-T
1 TCTC-TTTTTCT
22078626 TC-CTTTTTCT
1 TCTCTTTTTCT
22078636 TCTCTTTTTCT
1 TCTCTTTTTCT
*
22078647 TTTCTTTTT
1 TCTCTTTTT
22078656 TAATCATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
11 18 0.67
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (11 bp):
TCTCTTTTTCT
Found at i:22083707 original size:16 final size:17
Alignment explanation
Indices: 22083679--22083712 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
22083669 ATACAAATTA
22083679 TATATATAAAATAGTAT
1 TATATATAAAATAGTAT
*
22083696 TATATA-AAAATATTAT
1 TATATATAAAATAGTAT
22083712 T
1 T
22083713 GATTTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATATAAAATAGTAT
Found at i:22083893 original size:23 final size:23
Alignment explanation
Indices: 22083850--22083895 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22083840 GAAAAAGAAT
*
22083850 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
22083873 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
22083896 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:22083898 original size:19 final size:18
Alignment explanation
Indices: 22083874--22083912 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
22083864 ATAATAAAAT
*
22083874 AAAATAATGTACATACATA
1 AAAATAA-GTAAATACATA
*
22083893 AAAATAAGTAAATATATA
1 AAAATAAGTAAATACATA
22083911 AA
1 AA
22083913 CTAATAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAATAAGTAAATACATA
Found at i:22088247 original size:6 final size:7
Alignment explanation
Indices: 22088228--22088255 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
22088218 GTCTTAATTC
22088228 TTAAAAA
1 TTAAAAA
22088235 TTAAAAA
1 TTAAAAA
22088242 TTAAAAA
1 TTAAAAA
22088249 TTAAAAA
1 TTAAAAA
22088256 CTTCATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:22091108 original size:2 final size:2
Alignment explanation
Indices: 22091101--22091125 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22091091 TATGTATATG
22091101 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
22091126 CGCAAGCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22107991 original size:30 final size:30
Alignment explanation
Indices: 22107957--22108023 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
22107947 TTAACCCCTC
22107957 AAATTTTGAGTATTTACTCTTGGGCAACAA
1 AAATTTTGAGTATTTACTCTTGGGCAACAA
*
22107987 AAATTTTGAGTTTTTACTCTTGGGCAACAA
1 AAATTTTGAGTATTTACTCTTGGGCAACAA
22108017 AAATTTT
1 AAATTTT
22108024 CTTACTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (30 bp):
AAATTTTGAGTATTTACTCTTGGGCAACAA
Found at i:22113386 original size:18 final size:18
Alignment explanation
Indices: 22113363--22113405 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22113353 ATTAAAATGT
* *
22113363 AAAAATTAAATTAAAACA
1 AAAAATAAAAATAAAACA
*
22113381 AAAAATAAAAATAAAAGA
1 AAAAATAAAAATAAAACA
22113399 AAAAATA
1 AAAAATA
22113406 GCTAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (18 bp):
AAAAATAAAAATAAAACA
Found at i:22118002 original size:22 final size:24
Alignment explanation
Indices: 22117977--22118021 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
22117967 AATTCATTGC
22117977 ATATTCAC-ATCA-TTAGCATGAT
1 ATATTCACTATCACTTAGCATGAT
*
22117999 ATATTCACTATCACTTCGCATGA
1 ATATTCACTATCACTTAGCATGA
22118022 ATAACATGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 4 0.20
24 8 0.40
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (24 bp):
ATATTCACTATCACTTAGCATGAT
Found at i:22121923 original size:13 final size:13
Alignment explanation
Indices: 22121905--22121929 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22121895 CCCGATGGAG
22121905 ATACACTCGGTTT
1 ATACACTCGGTTT
22121918 ATACACTCGGTT
1 ATACACTCGGTT
22121930 GAATAAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (13 bp):
ATACACTCGGTTT
Found at i:22124035 original size:109 final size:108
Alignment explanation
Indices: 22123864--22124269 Score: 473
Period size: 109 Copynumber: 3.7 Consensus size: 108
22123854 TTTACCTTTA
* * *
22123864 AGGGTAATTCGGTAATTTTACCCTTCGAGGGTATCTCTA-TAATTTTACCCTTTAAGGGTATTTC
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-AGTAATTTTACCCTTTAAGGGTATTTC
* * * *
22123928 GGTAATGTATACACTTCTACGGTATTTCGATAATTTTTCCCTTCG
65 GATAAT-TTTACCCTTCTAGGGTATTTCGATAATTTTTCCCTTCG
*
22123973 AGGGTATTTC-AGTAATTTTACCCTTCGAGGGTATTTC-GATAATTTTA-CCTTTCAAGGCTATT
1 AGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTT-AAGGGTATT
* * * *
22124035 TCAATAATTTTACCCTTCAAGGGTATTTCGATAATTTTTACCTTTTG
63 TCGATAATTTTACCCTTCTAGGGTATTTCGATAATTTTT-CCCTTCG
* * * *
22124082 AAGGTATTTCGATAATTTTGCCCTTCAAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTCG
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
* *
22124147 ATAATTTTTACCCTT-TGAGGGTATTTCTATAATTTTACCCTTCG
66 ATAA-TTTTACCCTTCT-AGGGTATTTCGATAATTTTTCCCTTCG
* * * * *
22124191 AGGGTATTTCGATAATTTTATCCTTCGAGGATATTTCAGTAATTTTACCCTTCAGGGGTAATTC-
1 AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
*
22124255 AGTCATTTTACCCTT
66 A-TAATTTTACCCTT
22124270 TGGAGGTAAT
Statistics
Matches: 253, Mismatches: 33, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
108 43 0.17
109 175 0.69
110 35 0.14
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.43
Consensus pattern (108 bp):
AGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTAAGGGTATTTCG
ATAATTTTACCCTTCTAGGGTATTTCGATAATTTTTCCCTTCG
Found at i:22124075 original size:82 final size:80
Alignment explanation
Indices: 22123852--22124242 Score: 471
Period size: 82 Copynumber: 4.8 Consensus size: 80
22123842 TATAGAGACC
* * * *
22123852 ATTTTA-CCTTTAAGGGTAATTCGGTAATTTTACCCTTCGAGGGTATCTCTATAATTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAATTTTACCCTT
* *
22123916 TAAGGGTATTTCGGTA
65 TGAGGGTATTTCGATA
* * * * *
22123932 ATGTATACACTTCTACGGTATTTCGATAATTTTTCCCTTCGAGGGTATTTCAGTAATTTTACCCT
1 AT-TTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCA-TAATTTTACCCT
*
22123997 TCGAGGGTATTTCGATA
64 TTGAGGGTATTTCGATA
* * * * *
22124014 ATTTTACCTTTCAAGGCTATTTCAATAATTTTACCCTTCAAGGGTATTTCGATAATTTTTACCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAA-TTTTACCCT
*
22124079 TTGAAGGTATTTCGATA
64 TTGAGGGTATTTCGATA
* *
22124096 ATTTTGCCCTTCAAGGGTATTTC-AGTAATTTTACCCTTTGAGGGTATTTCGATAATTTTTACCC
1 ATTTTACCCTTCAAGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTC-ATAA-TTTTACCC
*
22124160 TTTGAGGGTATTTCTATA
63 TTTGAGGGTATTTCGATA
* * *
22124178 ATTTTACCCTTCGAGGGTATTTCGATAATTTTATCCTTCGAGGATATTTCAGTAATTTTACCCTT
1 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCA-TAATTTTACCCTT
22124243 CAGGGGTAAT
Statistics
Matches: 266, Mismatches: 37, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
80 2 0.01
81 58 0.22
82 205 0.77
83 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.44
Consensus pattern (80 bp):
ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCATAATTTTACCCTTT
GAGGGTATTTCGATA
Found at i:22124312 original size:27 final size:27
Alignment explanation
Indices: 22123852--22124309 Score: 423
Period size: 27 Copynumber: 16.9 Consensus size: 27
22123842 TATAGAGACC
* * *
22123852 ATTTTA-CCTTTAAGGGTAATTCGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
22123878 ATTTTACCCTTCGAGGGTATCTCTATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* *
22123905 ATTTTACCCTTTAAGGGTATTTCGGTA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
22123932 ATGTATACACTTCT-ACGGTATTTCGATA
1 AT-TTTACCCTT-TGAGGGTATTTCGATA
* *
22123960 ATTTTTCCCTTCGAGGGTATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
*
22123987 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
22124014 ATTTTA-CCTTTCAAGGCTATTTCAATA
1 ATTTTACCCTTT-GAGGGTATTTCGATA
**
22124041 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* *
22124068 ATTTTTACCTTTTGAAGGTATTTCGATA
1 A-TTTTACCCTTTGAGGGTATTTCGATA
* **
22124096 ATTTTGCCCTTCAAGGGTATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
22124123 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
*
22124150 ATTTTTACCCTTTGAGGGTATTTCTATA
1 A-TTTTACCCTTTGAGGGTATTTCGATA
*
22124178 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTGAGGGTATTTCGATA
* * *
22124205 ATTTTATCCTTCGAGGATATTTC-AGTA
1 ATTTTACCCTTTGAGGGTATTTCGA-TA
* * *
22124232 ATTTTACCC-TTCAGGGGTAATTC-AGTC
1 ATTTTACCCTTTGA-GGGTATTTCGA-TA
* *
22124259 ATTTTACCCTTTG-GAGGTAATTT-GGTC
1 ATTTTACCCTTTGAG-GGT-ATTTCGATA
*
22124286 ATTTTACCCTTTGAGGGTAATTCG
1 ATTTTACCCTTTGAGGGTATTTCG
22124310 GTCCTTTCAC
Statistics
Matches: 357, Mismatches: 55, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
26 19 0.05
27 255 0.71
28 82 0.23
29 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTTGAGGGTATTTCGATA
Found at i:22124321 original size:27 final size:26
Alignment explanation
Indices: 22124123--22124349 Score: 139
Period size: 27 Copynumber: 8.4 Consensus size: 26
22124113 TATTTCAGTA
* * *
22124123 ATTTTACCCTTTGAGGGTATTTCGATA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* ** *
22124150 ATTTTTACCCTTTGAGGGTATTTCTATA
1 A-TTTTACCCTTTG-GGGTAATTCGGTC
* * * *
22124178 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* * * * * *
22124205 ATTTTATCCTTCGAGGATATTTCAGTA
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* *
22124232 ATTTTACCCTTCAGGGGTAATTCAGTC
1 ATTTTACCCTT-TGGGGTAATTCGGTC
*
22124259 ATTTTACCCTTTGGAGGTAATTTGGTC
1 ATTTTACCCTTTGG-GGTAATTCGGTC
22124286 ATTTTACCCTTTGAGGGTAATTCGGTC
1 ATTTTACCCTTTG-GGGTAATTCGGTC
* * ** * *
22124313 CTTTCACCCATCGGGGGTAGTTCGATC
1 ATTTTACCC-TTTGGGGTAATTCGGTC
22124340 ATTTTACCCT
1 ATTTTACCCT
22124350 CGATTCGCAT
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 138 0.81
28 30 0.18
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTTGGGGTAATTCGGTC
Found at i:22131265 original size:28 final size:27
Alignment explanation
Indices: 22131201--22131266 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
22131191 GGGCTCTATT
**
22131201 CAGTGACAGTACAGTGAGGGCCTTCGCC
1 CAGT-ACAGTACAGTGAGGGCCTTAACC
* * *
22131229 CAATTCAGTAGCAGTGTGGGCCTTAACC
1 CAGTACAGTA-CAGTGAGGGCCTTAACC
22131257 CAGTACAGTA
1 CAGTACAGTA
22131267 TCGTTACAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (27 bp):
CAGTACAGTACAGTGAGGGCCTTAACC
Found at i:22131640 original size:27 final size:27
Alignment explanation
Indices: 22131607--22131725 Score: 84
Period size: 26 Copynumber: 4.4 Consensus size: 27
22131597 GATATAGAGA
22131607 TAATTTTACCCCTATA-GGGTATTACGG
1 TAATTTTACCCCT-TAGGGGTATTACGG
* *
22131634 TGATTTTA-CCCTTAGGGGTATTTCGG
1 TAATTTTACCCCTTAGGGGTATTACGG
* * *
22131660 TAATTATA-CCCTTCGAGGGTATTTA-AG
1 TAATTTTACCCCTTAG-GGGTA-TTACGG
* * * * *
22131687 TAATTTTACCCTTTGGGGGAATTTCGC
1 TAATTTTACCCCTTAGGGGTATTACGG
22131714 TAAGTTTTACCC
1 TAA-TTTTACCC
22131726 TTTGAAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
25 2 0.03
26 28 0.39
27 27 0.38
28 15 0.21
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACCCCTTAGGGGTATTACGG
Found at i:22131652 original size:26 final size:26
Alignment explanation
Indices: 22131607--22131764 Score: 97
Period size: 27 Copynumber: 5.8 Consensus size: 26
22131597 GATATAGAGA
22131607 TAATTTTACCCCTATA-GGGTATTACGG
1 TAATTTTA-CCCT-TAGGGGTATTACGG
* *
22131634 TGATTTTACCCTTAGGGGTATTTCGG
1 TAATTTTACCCTTAGGGGTATTACGG
* * *
22131660 TAATTATACCCTTCGAGGGTATTTA-AG
1 TAATTTTACCCTTAG-GGGTA-TTACGG
* * * *
22131687 TAATTTTACCCTTTGGGGGAATTTCGC
1 TAATTTTACCC-TTAGGGGTATTACGG
* * *
22131714 TAAGTTTTACCCTTTGAAGGTATTTA-AG
1 TAA-TTTTACCCTTAG-GGGTA-TTACGG
*
22131742 TAATTTTACCCTTCGAGGGTATT
1 TAATTTTACCCTTAG-GGGTATT
22131765 TTTGTAATTT
Statistics
Matches: 102, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
25 2 0.02
26 30 0.29
27 49 0.48
28 19 0.19
29 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (26 bp):
TAATTTTACCCTTAGGGGTATTACGG
Found at i:22131736 original size:55 final size:54
Alignment explanation
Indices: 22131636--22131754 Score: 168
Period size: 55 Copynumber: 2.2 Consensus size: 54
22131626 TATTACGGTG
* * *
22131636 ATTTTACCC-TTAGGGGTATTTCGGTAATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTTAGGGGAATTTCGCTAATTATACCCTTCGAAGGTATTTAAGTA
* * *
22131689 ATTTTACCCTTTGGGGGAATTTCGCTAAGTTTTACCCTTTGAAGGTATTTAAGTA
1 ATTTTACCCTTTAGGGGAATTTCGCTAA-TTATACCCTTCGAAGGTATTTAAGTA
22131744 ATTTTACCCTT
1 ATTTTACCCTT
22131755 CGAGGGTATT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 9 0.16
54 15 0.26
55 34 0.59
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTTTAGGGGAATTTCGCTAATTATACCCTTCGAAGGTATTTAAGTA
Found at i:22131762 original size:27 final size:26
Alignment explanation
Indices: 22131636--22131868 Score: 166
Period size: 27 Copynumber: 8.7 Consensus size: 26
22131626 TATTACGGTG
* *
22131636 ATTTTACCCTTAG-GGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
*
22131662 ATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
* * * *
22131689 ATTTTACCCTTTGGGGGAATTTCGCTA
1 ATTTTACCCTTCGAGGGTATTTAG-TA
* *
22131716 AGTTTTACCCTTTGAAGGTATTTAAGTA
1 A-TTTTACCCTTCGAGGGTATTT-AGTA
*
22131744 ATTTTACCCTTCGAGGGTATTTTTGTA
1 ATTTTACCCTTCGAGGGTA-TTTAGTA
* * * *
22131771 ATTTTATCGTTCAAGGGTATTTGGGTA
1 ATTTTACCCTTCGAGGGTATTT-AGTA
* * * *
22131798 ATTCTACCCTTCGA-GGTAATTCGATC
1 ATTTTACCCTTCGAGGGTATTTAG-TA
* **
22131824 ATTTTACCCTTCGAAGGTAATTT-GGC
1 ATTTTACCCTTCGAGGGT-ATTTAGTA
*
22131850 ATTTTACCCTTCGGGGGTA
1 ATTTTACCCTTCGAGGGTA
22131869 ATTCGGTCCT
Statistics
Matches: 166, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.01
26 52 0.31
27 84 0.51
28 27 0.16
29 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTAGTA
Found at i:22131800 original size:54 final size:53
Alignment explanation
Indices: 22131636--22131865 Score: 184
Period size: 54 Copynumber: 4.3 Consensus size: 53
22131626 TATTACGGTG
* * *
22131636 ATTTTACCCTTAGGGGTA-TTTCGGTAATTATACCCTTCGAGGGTATTTAAGTA
1 ATTTTACCCTTCGGGGTATTTTC-GTAATTTTACCCTTCAAGGGTATTTAAGTA
* * * *
22131689 ATTTTACCCTTTGGGGGAATTTCGCTAAGTTTTACCCTTTGAA-GGTATTTAAGTA
1 ATTTTACCCTTCGGGGTATTTTCG-TAA-TTTTACCC-TTCAAGGGTATTTAAGTA
* * * **
22131744 ATTTTACCCTTCGAGGGTATTTTTGTAATTTTATCGTTCAAGGGTATTTGGGTA
1 ATTTTACCCTTCG-GGGTATTTTCGTAATTTTACCCTTCAAGGGTATTTAAGTA
* * * * **
22131798 ATTCTACCCTTCGAGGTA-ATTCGATCATTTTACCCTTCGAA-GGTAATTT--GGC
1 ATTTTACCCTTCGGGGTATTTTCG-TAATTTTACCCTTC-AAGGGT-ATTTAAGTA
22131850 ATTTTACCCTTCGGGG
1 ATTTTACCCTTCGGGG
22131866 GTAATTCGGT
Statistics
Matches: 143, Mismatches: 25, Indels: 19
0.76 0.13 0.10
Matches are distributed among these distances:
52 18 0.13
53 39 0.27
54 41 0.29
55 34 0.24
56 11 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (53 bp):
ATTTTACCCTTCGGGGTATTTTCGTAATTTTACCCTTCAAGGGTATTTAAGTA
Found at i:22131831 original size:26 final size:25
Alignment explanation
Indices: 22131802--22131885 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 25
22131792 TGGGTAATTC
22131802 TACCCTTCGAGGTAATTCGATCATTT
1 TACCCTTCGAGGTAATTCG-TCATTT
* *
22131828 TACCCTTCGAAGGTAATTTGGCATTT
1 TACCCTTCG-AGGTAATTCGTCATTT
* *
22131854 TACCCTTCGGGGGTAATTCGGTCCTTT
1 TACCCTTC-GAGGTAATTC-GTCATTT
22131881 TACCC
1 TACCC
22131886 AATCACAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 29 0.59
27 20 0.41
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (25 bp):
TACCCTTCGAGGTAATTCGTCATTT
Found at i:22140115 original size:5 final size:6
Alignment explanation
Indices: 22140098--22140124 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22140088 ACAATTCAAA
22140098 TATTTT TATTTT TATTTT TATTTT TAT
1 TATTTT TATTTT TATTTT TATTTT TAT
22140125 ATTTGGGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:22143317 original size:16 final size:17
Alignment explanation
Indices: 22143296--22143327 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
22143286 GTGAACTCCC
22143296 TTTCTTGGCG-ATCCTA
1 TTTCTTGGCGAATCCTA
22143312 TTTCTTGGCGAATCCT
1 TTTCTTGGCGAATCCT
22143328 CCCTGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (17 bp):
TTTCTTGGCGAATCCTA
Found at i:22147887 original size:21 final size:23
Alignment explanation
Indices: 22147851--22147898 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
22147841 ATTGTTCCCT
22147851 TTTAGTTATCTTTAGTACA-TAA
1 TTTAGTTATCTTTAGTACAGTAA
*
22147873 TTTAG-TATTTTTAGTACAGTAA
1 TTTAGTTATCTTTAGTACAGTAA
22147895 TTTA
1 TTTA
22147899 CATTTTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (23 bp):
TTTAGTTATCTTTAGTACAGTAA
Found at i:22147903 original size:21 final size:21
Alignment explanation
Indices: 22147861--22147904 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22147851 TTTAGTTATC
*
22147861 TTTAGTACATAATTTAGTATT
1 TTTAGTACATAATTTAGCATT
22147882 TTTAGTACAGTAATTTA-CATT
1 TTTAGTACA-TAATTTAGCATT
22147903 TT
1 TT
22147905 ATGACTCAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (21 bp):
TTTAGTACATAATTTAGCATT
Found at i:22151196 original size:30 final size:30
Alignment explanation
Indices: 22151158--22151344 Score: 170
Period size: 29 Copynumber: 6.3 Consensus size: 30
22151148 GCTATCGATC
22151158 ATGAAAAGGGATGGTGACGACCATC-AATT
1 ATGAAAAGGGATGGTGACGACCATCGAATT
*
22151187 ATGGAAAA-GGATGGTGACGATCATCG-ATT
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
* * *
22151216 ATGGGAAA-GGATGGTGACGACCGTCGAATA
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
* * *
22151246 ATGAAAAGGGATGGCT-TCGGCTATCG-ATCT
1 ATGAAAAGGGATGG-TGACGACCATCGAAT-T
*
22151276 ATGAAAAGGTATGGTGACGACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCGAATT
* * * * *
22151306 ATAAAAAAAGGATGGTGGCAACCATCAAATT
1 AT-GAAAAGGGATGGTGACGACCATCGAATT
22151337 ATGAAAAG
1 ATGAAAAG
22151345 AGATAGCTTC
Statistics
Matches: 126, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
29 51 0.40
30 48 0.38
31 27 0.21
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.21
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAATT
Found at i:22151315 original size:32 final size:31
Alignment explanation
Indices: 22151279--22151343 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
22151269 TCGATCTATG
* *
22151279 AAAAGGTATGGTGACGACCATCGAATTATAAA
1 AAAAGG-ATGGTGACAACCATCAAATTATAAA
* *
22151311 AAAAGGATGGTGGCAACCATCAAATTATGAA
1 AAAAGGATGGTGACAACCATCAAATTATAAA
22151342 AA
1 AA
22151344 GAGATAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.20
Consensus pattern (31 bp):
AAAAGGATGGTGACAACCATCAAATTATAAA
Found at i:22151354 original size:91 final size:88
Alignment explanation
Indices: 22151190--22151361 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 88
22151180 ATCAATTATG
* *** * * * *
22151190 GAAAAGGATGGTGACGATCATCGATTATGGGAAAGGATGGTGACGACCGTCGAATAATGAAAAGG
1 GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
* *
22151255 GATGGCTTCGGCTATCGATCTAT
66 GATAGCTTCAGCTATCGATCTAT
* *
22151278 GAAAAGGTATGGTGACGACCATCGAATTATAAAAAAAGGATGGTGGCAACCATCAAATTATGAAA
1 GAAAAGG-ATGGTGACGACCATCG-ATTAT-AAAAAAGGATGGTGACAACCATCAAATAATGAAA
22151343 AGAGATAGCTTCAGCTATC
63 AGAGATAGCTTCAGCTATC
22151362 AAACTTCGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
88 7 0.10
89 15 0.22
90 5 0.07
91 42 0.61
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (88 bp):
GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
GATAGCTTCAGCTATCGATCTAT
Found at i:22151373 original size:91 final size:88
Alignment explanation
Indices: 22151190--22151397 Score: 204
Period size: 91 Copynumber: 2.3 Consensus size: 88
22151180 ATCAATTATG
* *** * * * *
22151190 GAAAAGGATGGTGACGATCATCGATTATGGGAAAGGATGGTGACGACCGTCGAATAATGAAAAGG
1 GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
* * * *
22151255 GATGGCTTCGGCTATCGATCTAT
66 GATAGCTTCAGCTATCAAACTAT
* *
22151278 GAAAAGGTATGGTGACGACCATCGAATTATAAAAAAAGGATGGTGGCAACCATCAAATTATGAAA
1 GAAAAGG-ATGGTGACGACCATCG-ATTAT-AAAAAAGGATGGTGACAACCATCAAATAATGAAA
22151343 AGAGATAGCTTCAGCTATCAAACT-T
63 AGAGATAGCTTCAGCTATCAAACTAT
* *
22151368 CGAAAAGGGATGG-GTCAACCATCGTATTAT
1 -GAAAA-GGATGGTGACGACCATCG-ATTAT
22151398 TACCTCATGT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
88 7 0.07
89 15 0.15
90 20 0.20
91 54 0.55
92 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (88 bp):
GAAAAGGATGGTGACGACCATCGATTATAAAAAAGGATGGTGACAACCATCAAATAATGAAAAGA
GATAGCTTCAGCTATCAAACTAT
Found at i:22167718 original size:27 final size:27
Alignment explanation
Indices: 22167680--22167790 Score: 177
Period size: 27 Copynumber: 4.1 Consensus size: 27
22167670 GATTGAAATA
*
22167680 CCCCTATAGGGTAAAATGACCGTAATG
1 CCCCTATAGGGTAAAATGACCATAATG
* *
22167707 CCCCTGTAGGGTAAAATGACCATAATA
1 CCCCTATAGGGTAAAATGACCATAATG
* *
22167734 CCCCTATAGAGTAAAATGACCGTAATG
1 CCCCTATAGGGTAAAATGACCATAATG
22167761 CCCCTATAGGGTAAAATGACCATAATG
1 CCCCTATAGGGTAAAATGACCATAATG
22167788 CCC
1 CCC
22167791 TAGTGGGTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCATAATG
Found at i:22167758 original size:54 final size:54
Alignment explanation
Indices: 22167676--22167786 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
22167666 TCTGGATTGA
* *
22167676 AATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCAT
1 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
22167730 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
1 AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
22167784 AAT
1 AAT
22167787 GCCCTAGTGG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (54 bp):
AATACCCCTATAGAGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCAT
Found at i:22168002 original size:26 final size:26
Alignment explanation
Indices: 22167973--22168030 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
22167963 TTGGCCACAT
22167973 ATACTATT-AGTAGCAGCTTTGCTGCG
1 ATACTATTGA-TAGCAGCTTTGCTGCG
* *
22167999 ATACTGTTGATGGCAGCTTTGCTGCG
1 ATACTATTGATAGCAGCTTTGCTGCG
22168025 ATACTA
1 ATACTA
22168031 GTGCTGGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (26 bp):
ATACTATTGATAGCAGCTTTGCTGCG
Found at i:22168077 original size:32 final size:32
Alignment explanation
Indices: 22168035--22168211 Score: 162
Period size: 32 Copynumber: 5.5 Consensus size: 32
22168025 ATACTAGTGC
* *
22168035 TGGCTTTGTGCCGATCATAGTACTGTTACTGG
1 TGGCTGTGTGCCGATCATAGTACTGTTACTGA
* *
22168067 TGGCTGTGTGCCGGTCAT-TTCACTGTTACTGA
1 TGGCTGTGTGCCGATCATAGT-ACTGTTACTGA
** ** *
22168099 TGGCTGTGTGCCGATCATAACACTACTATTGA
1 TGGCTGTGTGCCGATCATAGTACTGTTACTGA
* * *
22168131 TGGCTTTGTGCCTATCAT-GTTACCGTTACTGA
1 TGGCTGTGTGCCGATCATAG-TACTGTTACTGA
* *
22168163 TGGCTGTGTGCCGATCGTA-TCACTGTTACTAA
1 TGGCTGTGTGCCGATCATAGT-ACTGTTACTGA
* *
22168195 TGGCTTTGTGCCAATCA
1 TGGCTGTGTGCCGATCA
22168212 CATTATTGTA
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
31 2 0.02
32 112 0.98
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (32 bp):
TGGCTGTGTGCCGATCATAGTACTGTTACTGA
Found at i:22168115 original size:64 final size:63
Alignment explanation
Indices: 22168035--22168211 Score: 194
Period size: 64 Copynumber: 2.8 Consensus size: 63
22168025 ATACTAGTGC
* * * * *
22168035 TGGCTTTGTGCCGATCATAGTACTGTTACTGGTGGCTGTGTGCCGGTCAT-TTCACTGTTACTGA
1 TGGCTGTGTGCCGATCATA-TACTGTTACTGATGGCTTTGTGCCGATCATGTT-ACCGTTACTGA
* ** * *
22168099 TGGCTGTGTGCCGATCATAACACTACTATTGATGGCTTTGTGCCTATCATGTTACCGTTACTGA
1 TGGCTGTGTGCCGATCAT-ATACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGA
* * *
22168163 TGGCTGTGTGCCGATCGTATCACTGTTACTAATGGCTTTGTGCCAATCA
1 TGGCTGTGTGCCGATCATAT-ACTGTTACTGATGGCTTTGTGCCGATCA
22168212 CATTATTGTA
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
63 1 0.01
64 89 0.96
65 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (63 bp):
TGGCTGTGTGCCGATCATATACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGA
Found at i:22168167 original size:96 final size:96
Alignment explanation
Indices: 22168026--22168211 Score: 257
Period size: 96 Copynumber: 1.9 Consensus size: 96
22168016 TTTGCTGCGA
* * * * *
22168026 TACTAGTGCTGGCTTTGTGCCGATCATAGTACTGTTACTGGTGGCTGTGTGCCGGTCATTTCACT
1 TACTAGTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTGTGTGCCGATCATATCACT
* *
22168091 GTTACTGATGGCTGTGTGCCGATCATAACAC
66 GTTACTAATGGCTGTGTGCCAATCATAACAC
* * *
22168122 TACTATTGATGGCTTTGTGCCTATCAT-GTTACCGTTACTGATGGCTGTGTGCCGATCGTATCAC
1 TACTAGTGATGGCTTTGTGCCGATCATAG-TACCGTTACTGATGGCTGTGTGCCGATCATATCAC
*
22168186 TGTTACTAATGGCTTTGTGCCAATCA
65 TGTTACTAATGGCTGTGTGCCAATCA
22168212 CATTATTGTA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 77 0.99
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.36
Consensus pattern (96 bp):
TACTAGTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTGTGTGCCGATCATATCACT
GTTACTAATGGCTGTGTGCCAATCATAACAC
Found at i:22171235 original size:20 final size:20
Alignment explanation
Indices: 22171176--22171316 Score: 81
Period size: 20 Copynumber: 7.1 Consensus size: 20
22171166 AATTACTGAA
* * *
22171176 TGATTGCATTTACGTGTCCC
1 TGATTGCACTTAGGTGCCCC
* * *
22171196 TGCTTGTACCTT-GGTACCCC
1 TGATTGCA-CTTAGGTGCCCC
*
22171216 TGATTGCACTTATGTGCCCC
1 TGATTGCACTTAGGTGCCCC
** * * * *
22171236 TCTTTGTACTTCGGTACCCT
1 TGATTGCACTTAGGTGCCCC
*
22171256 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTAGGTGCCCC
** * *
22171276 TCTTTGTACTTCA-GTACCCC
1 TGATTGCACTT-AGGTGCCCC
22171296 TGATTGCACTT-GGTGCCCC
1 TGATTGCACTTAGGTGCCCC
22171315 TG
1 TG
22171317 TTATGCATCT
Statistics
Matches: 85, Mismatches: 32, Indels: 9
0.67 0.25 0.07
Matches are distributed among these distances:
19 11 0.13
20 71 0.84
21 3 0.04
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.37
Consensus pattern (20 bp):
TGATTGCACTTAGGTGCCCC
Found at i:22171243 original size:40 final size:40
Alignment explanation
Indices: 22171176--22171315 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
22171166 AATTACTGAA
* *
22171176 TGATTGCATTTACGTGTCCCTGC-TTGTACCTT-GGTACCCC
1 TGATTGCACTTACGTGCCCCT-CTTTGTA-CTTCGGTACCCC
* *
22171216 TGATTGCACTTATGTGCCCCTCTTTGTACTTCGGTACCCT
1 TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
*
22171256 TGATTGCACTTACGTGCCCCTCTTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
*
22171296 TGATTGCACTT-GGTGCCCCT
1 TGATTGCACTTACGTGCCCCT
22171316 GTTATGCATC
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 12 0.13
40 78 0.87
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.37
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTCTTTGTACTTCGGTACCCC
Found at i:22174394 original size:91 final size:91
Alignment explanation
Indices: 22174239--22174417 Score: 349
Period size: 91 Copynumber: 2.0 Consensus size: 91
22174229 ACTAACATGT
*
22174239 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACCATACACA
1 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
22174304 CATACTATGAAACTTTATTTTCCTGA
66 CATACTATGAAACTTTATTTTCCTGA
22174330 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
1 GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
22174395 CATACTATGAAACTTTATTTTCC
66 CATACTATGAAACTTTATTTTCC
22174418 GACACGAGCT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (91 bp):
GTTAACTCAATACCCACTCATGACATTACTTCATTCCAAATCATATACCAAATATACAATACACA
CATACTATGAAACTTTATTTTCCTGA
Found at i:22175534 original size:90 final size:88
Alignment explanation
Indices: 22175365--22175534 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 88
22175355 CGTTACACTA
* ** * * *
22175365 TGGATCAGCACATAACACCACCATTATAATCAATTATATTCGGTGGAATCAGCATATAGCAACCA
1 TGGATCAGCACATAACACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAACCA
**
22175430 CCTTTATTTTCAATGATTTCCGG
66 CCTTTATAATCAATGATTTCCGG
* * *
22175453 TGGAGTCAGCACATAGCTACCACCTTTATAATCAATGGTACCCGGTGGAATCAGAACATAACAAC
1 TGGA-TCAGCACATAAC-ACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAAC
22175518 CACCTTTATAATCAATG
64 CACCTTTATAATCAATG
22175535 GTACCCGGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
88 4 0.06
89 11 0.16
90 54 0.78
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (88 bp):
TGGATCAGCACATAACACCACCATTATAATCAATGATACCCGGTGGAATCAGAACATAACAACCA
CCTTTATAATCAATGATTTCCGG
Found at i:22175535 original size:45 final size:45
Alignment explanation
Indices: 22175368--22175543 Score: 201
Period size: 45 Copynumber: 3.9 Consensus size: 45
22175358 TACACTATGG
* * **
22175368 ATCAGCACATAAC-ACCACCATTATAATCAATTATATTCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* * ** **
22175412 ATCAGCATATAGCAACCACCTTTATTTTCAATGATTTCCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* * * *
22175457 GTCAGCACATAGCTACCACCTTTATAATCAATGGTACCCGGTGGA
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
* *
22175502 ATCAGAACATAACAACCACCTTTATAATCAATGGTACCCGGT
1 ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGT
22175544 ACACGTAGTA
Statistics
Matches: 111, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 11 0.10
45 100 0.90
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (45 bp):
ATCAGCACATAACAACCACCTTTATAATCAATGATACCCGGTGGA
Found at i:22192444 original size:24 final size:24
Alignment explanation
Indices: 22192399--22192450 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
22192389 TCGTGGGTAA
* *
22192399 GAAGAAGAGGAGCAAGAAAGTGAT
1 GAAGAAGAAGAGCAAGAAAGTGAG
*
22192423 GAAGAAGAAGAG-AATGAGAGTGAG
1 GAAGAAGAAGAGCAA-GAAAGTGAG
22192447 GAAG
1 GAAG
22192451 GGGAGGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.50, C:0.02, G:0.40, T:0.08
Consensus pattern (24 bp):
GAAGAAGAAGAGCAAGAAAGTGAG
Found at i:22197635 original size:33 final size:33
Alignment explanation
Indices: 22197598--22197663 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
22197588 GAATAGATTT
*
22197598 CTCCCCCT-TAATAAAAGTCATTTTCAATTTAAG
1 CTCCCCCTAT-ATAAAAATCATTTTCAATTTAAG
22197631 CTCCCCCTATATAAAAATCATTTTCAATTTAAG
1 CTCCCCCTATATAAAAATCATTTTCAATTTAAG
22197664 GCATAAAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (33 bp):
CTCCCCCTATATAAAAATCATTTTCAATTTAAG
Found at i:22203866 original size:18 final size:18
Alignment explanation
Indices: 22203843--22203880 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22203833 GGGCTCCGCC
22203843 CCGCACCCCTGGTCCATA
1 CCGCACCCCTGGTCCATA
*
22203861 CCGCACCCCTGGTCTATA
1 CCGCACCCCTGGTCCATA
22203879 CC
1 CC
22203881 CCTGTCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.50, G:0.16, T:0.18
Consensus pattern (18 bp):
CCGCACCCCTGGTCCATA
Found at i:22208472 original size:1 final size:1
Alignment explanation
Indices: 22208466--22208519 Score: 108
Period size: 1 Copynumber: 54.0 Consensus size: 1
22208456 TAATTCAAAT
22208466 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22208520 TAAGTTGAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:22210422 original size:39 final size:40
Alignment explanation
Indices: 22210327--22210588 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
22210317 TTGAATTCTG
*
22210327 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
22210366 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
22210406 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
22210445 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
22210484 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22210523 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
22210564 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22210589 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
39 129 0.64
40 59 0.29
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:22210539 original size:118 final size:120
Alignment explanation
Indices: 22210327--22210588 Score: 333
Period size: 118 Copynumber: 2.2 Consensus size: 120
22210317 TTGAATTCTG
22210327 TCCGGGCTAAGTCCCGAAGGC-TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
*
22210391 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACCA-AA
66 GTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACCATAA
* * * **
22210445 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC-T
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCAT
* * *
22210506 TTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
64 TTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACCATAA
*
22210564 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
22210589 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
117 28 0.22
118 84 0.67
119 14 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACCATAA
Found at i:22210610 original size:79 final size:78
Alignment explanation
Indices: 22210328--22210621 Score: 291
Period size: 79 Copynumber: 3.7 Consensus size: 78
22210318 TGAATTCTGT
* **
22210328 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTAA-ATCCGGGTTAAG-TCCCGAAGGCAT
*
22210389 TTGTGCGAGA-TACTAATT
62 TTGTGCGA-ATTACTAA-A
* *
22210407 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAATCCGGGTTAAGTCCCGAAGGC-TTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
22210470 TGCGAGTTACTAAA
65 TGCGAATTACTAAA
* *
22210484 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTT
22210548 GTGCGAATTACTATAA
64 GTGCGAATTACTA-AA
* ** * * *
22210564 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTAAATCCGGGTTAAGTCCCGAAGG
22210622 TACGTGATTT
Statistics
Matches: 185, Mismatches: 19, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
78 71 0.38
79 89 0.48
80 25 0.14
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
GCGAATTACTAAA
Found at i:22226658 original size:21 final size:22
Alignment explanation
Indices: 22226634--22226674 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22226624 AAATTACTCA
*
22226634 ACTTTACTTTTAT-TCAAAAAC
1 ACTTTAATTTTATATCAAAAAC
22226655 ACTTTAATTTTATATCAAAA
1 ACTTTAATTTTATATCAAAA
22226675 CATATTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
ACTTTAATTTTATATCAAAAAC
Found at i:22226817 original size:32 final size:33
Alignment explanation
Indices: 22226759--22226823 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
22226749 GAATAGATTT
22226759 CTCCCCCTTAATAAAAGTCATTTTCAATTTAAG
1 CTCCCCCTTAATAAAAGTCATTTTCAATTTAAG
22226792 CTCCCCC-TATATAAAA-TCATTTTCAATTTAAG
1 CTCCCCCTTA-ATAAAAGTCATTTTCAATTTAAG
22226824 GCATAAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.37
Consensus pattern (33 bp):
CTCCCCCTTAATAAAAGTCATTTTCAATTTAAG
Found at i:22232911 original size:18 final size:18
Alignment explanation
Indices: 22232888--22232925 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22232878 GGGCTCCGCC
22232888 CCGCACCCCTGGTCCATA
1 CCGCACCCCTGGTCCATA
*
22232906 CCGCACCCCTGGTCTATA
1 CCGCACCCCTGGTCCATA
22232924 CC
1 CC
22232926 CCTGTCCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.50, G:0.16, T:0.18
Consensus pattern (18 bp):
CCGCACCCCTGGTCCATA
Found at i:22239566 original size:40 final size:39
Alignment explanation
Indices: 22239477--22239730 Score: 257
Period size: 40 Copynumber: 6.7 Consensus size: 39
22239467 TTGAATTCTG
* *
22239477 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-A
*
22239516 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
22239555 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATAC-AA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
22239593 TCCGGG-TAAG-CCCGAAGGC-TTTGTGC--GATA--AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* * *
22239625 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AA
*
22239665 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-A
* *
22239705 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22239731 AACGAGGAGC
Statistics
Matches: 189, Mismatches: 10, Indels: 31
0.82 0.04 0.13
Matches are distributed among these distances:
32 8 0.04
33 8 0.04
34 9 0.05
35 14 0.07
36 13 0.07
37 9 0.05
38 2 0.01
39 43 0.23
40 74 0.39
41 8 0.04
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:22239748 original size:80 final size:77
Alignment explanation
Indices: 22239477--22239763 Score: 260
Period size: 80 Copynumber: 3.8 Consensus size: 77
22239467 TTGAATTCTG
* **
22239477 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
22239538 TTTGTGCGAGATACTAA
62 TTTGTGCGA-ATACTAA
22239555 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGA-GA-TACAATCCGGG-TAAG-CCCGAAGGC-TT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTA-AATCCGGGTTAAGTCCCGAAGGCATT
22239614 TGTGCG-ATA--AA
64 TGTGCGAATACTAA
* * *
22239625 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTT
22239690 GTGCGAATTACTATA
65 GTGCGAA-TACTA-A
* * ** * * *
22239705 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTAAATCCGGGTTAAGTCCCGAAGG
22239764 TACGTGATTT
Statistics
Matches: 175, Mismatches: 15, Indels: 36
0.77 0.07 0.16
Matches are distributed among these distances:
69 10 0.06
70 20 0.11
72 12 0.07
73 6 0.03
74 17 0.10
75 16 0.09
76 5 0.03
77 11 0.06
78 10 0.06
79 28 0.16
80 40 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATACTAA
Found at i:22247347 original size:40 final size:40
Alignment explanation
Indices: 22247258--22247521 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
22247248 TTGAATTCTG
*
22247258 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
22247297 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
22247337 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
22247376 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
22247416 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
22247456 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
22247497 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22247522 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 53 0.26
40 136 0.67
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:22247539 original size:80 final size:78
Alignment explanation
Indices: 22247259--22247554 Score: 291
Period size: 80 Copynumber: 3.7 Consensus size: 78
22247249 TGAATTCTGT
* **
22247259 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTAA-ATCCGGGTTAAG-TCCCGAAGGCAT
*
22247320 TTGTGCGAGA-TACTAATT
62 TTGTGCGA-ATTACTAA-A
* * *
22247338 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACCAAATCCGGGTTAAGTCCCGAAGGCCTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
22247402 TGCGAGTTACTAAA
65 TGCGAATTACTAAA
* * *
22247416 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTT
22247481 GTGCGAATTACTATAA
64 GTGCGAATTACTA-AA
* ** * * *
22247497 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTAAATCCGGGTTAAGTCCCGAAGG
22247555 TACGTGATTT
Statistics
Matches: 185, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
78 10 0.05
79 71 0.38
80 102 0.55
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
GCGAATTACTAAA
Found at i:22247539 original size:120 final size:118
Alignment explanation
Indices: 22247258--22247554 Score: 304
Period size: 119 Copynumber: 2.5 Consensus size: 118
22247248 TTGAATTCTG
* *
22247258 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
*
22247318 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACCAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACCAAA
* * ** * * *
22247376 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
22247441 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACCA-AA
* * *
22247497 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
22247555 TACGTGATTT
Statistics
Matches: 150, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
118 23 0.15
119 64 0.43
120 61 0.41
121 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACCAAA
Found at i:22249606 original size:18 final size:18
Alignment explanation
Indices: 22249583--22249620 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
22249573 GGGCTCCGCC
22249583 CCGCACCCCTGGTCCATA
1 CCGCACCCCTGGTCCATA
22249601 CCGCACCCCTGGTCCATA
1 CCGCACCCCTGGTCCATA
22249619 CC
1 CC
22249621 CCTGTCCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.53, G:0.16, T:0.16
Consensus pattern (18 bp):
CCGCACCCCTGGTCCATA
Found at i:22259396 original size:16 final size:16
Alignment explanation
Indices: 22259375--22259406 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22259365 ATTTTGTTGC
*
22259375 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
22259391 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
22259407 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:22259692 original size:51 final size:50
Alignment explanation
Indices: 22259634--22259825 Score: 217
Period size: 51 Copynumber: 3.8 Consensus size: 50
22259624 CCGGTTCACA
**
22259634 TAGTAGCCTGCACATAGTACTACACATATGACCATCACTATCTAATACACG
1 TAGTAGCCTGCACATAGTACTACACATATGACCATCACT-TCTGGTACACG
* * * * ** *
22259685 TAGTAGCCTGCACATAGTACTACACACATGATCA-AAGCTGTCCGGTATGCA
1 TAGTAGCCTGCACATAGTACTACACATATGACCATCA-CT-TCTGGTACACG
* **
22259736 TAGTAGCCTCCACATAGTACTACACATGCGACCTATCA-TTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATATGACC-ATCACTTCTGGTACACG
*
22259786 TAGTAGCCTGCACATAGTACTACACATATGGCCATCACTT
1 TAGTAGCCTGCACATAGTACTACACATATGACCATCACTT
22259826 TCACTTTCAC
Statistics
Matches: 113, Mismatches: 24, Indels: 9
0.77 0.16 0.06
Matches are distributed among these distances:
49 4 0.04
50 39 0.35
51 68 0.60
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATATGACCATCACTTCTGGTACACG
Found at i:22259839 original size:101 final size:102
Alignment explanation
Indices: 22259628--22259851 Score: 251
Period size: 101 Copynumber: 2.2 Consensus size: 102
22259618 ATGATACCGG
* *
22259628 TTCACATAGTAGCCTGCACATAGTACTACACATATGACCATCACTATCTAATACACGTAGTAGCC
1 TTCACATAGTAGCCTACACATAGTACTACACATACGACCATCACTATCTAATACACGTAGTAGCC
*
22259693 TGCACATAGTACTACACACATGATCAAAGCTGTCCGGT
66 TGCACATAGTACTACACACATGACCAAAGCTGTCC-GT
* * * * **
22259731 AT-GCATAGTAGCCTCCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGC
1 TTCACATAGTAGCCTACACATAGTACTACACATACGACC-ATCACTATCTAATACACGTAGTAGC
* * * *
22259793 CTGCACATAGTACTACACATATGGCCATCA-CTTTCAC-T
65 CTGCACATAGTACTACACACATGACCA-AAGCTGTC-CGT
*
22259831 TTCACATAGTGGCCTACACAT
1 TTCACATAGTAGCCTACACAT
22259852 TCACTTTCAC
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
100 2 0.02
101 59 0.58
102 35 0.35
103 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (102 bp):
TTCACATAGTAGCCTACACATAGTACTACACATACGACCATCACTATCTAATACACGTAGTAGCC
TGCACATAGTACTACACACATGACCAAAGCTGTCCGT
Found at i:22259854 original size:26 final size:26
Alignment explanation
Indices: 22259808--22259876 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
22259798 CATAGTACTA
*
22259808 CACATA-TGGCC-ATCACTTTCACTTT
1 CACATAGTGGCCTA-CACATTCACTTT
22259833 CACATAGTGGCCTACACATTCACTTT
1 CACATAGTGGCCTACACATTCACTTT
22259859 CACATAGTGGCCTACACA
1 CACATAGTGGCCTACACA
22259877 CAGTCCACGC
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
25 6 0.15
26 34 0.83
27 1 0.02
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.29
Consensus pattern (26 bp):
CACATAGTGGCCTACACATTCACTTT
Found at i:22268193 original size:14 final size:15
Alignment explanation
Indices: 22268164--22268196 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
22268154 TACAACAATT
*
22268164 AATATTTTTAGTGAC
1 AATATTGTTAGTGAC
22268179 AATATTGTT-GTGAC
1 AATATTGTTAGTGAC
22268193 AATA
1 AATA
22268197 AAAAATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (15 bp):
AATATTGTTAGTGAC
Found at i:22269474 original size:16 final size:16
Alignment explanation
Indices: 22269455--22269486 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22269445 ATTATTATAA
22269455 AAATAAATTTAACATT
1 AAATAAATTTAACATT
22269471 AAATAAATTTAACATT
1 AAATAAATTTAACATT
22269487 TGTGAGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATAAATTTAACATT
Found at i:22270138 original size:115 final size:116
Alignment explanation
Indices: 22269955--22270216 Score: 348
Period size: 115 Copynumber: 2.3 Consensus size: 116
22269945 ATATATTTTT
* * * *
22269955 ATTTTTATTTTTGGGATTTTAATAGAATTTTATGCCTCAATAATTTATTATCACATGGAAATGTT
1 ATTTTTATTTTTGGGAGTTTAATAGAATTTTAAGCCTCAATAATCTATTATCACATGAAAATGTT
*
22270020 GCCTTATCTTTCTAAATAA-ATCA-ATTTAAAAAATTCTAGTAAATATTCCA
66 GCCTTATCTTTC-AAAAAAGATCATATTTAAAAAATTCTAGTAAATATTCCA
* * * * * *
22270070 ATTTTTATTTTTGGAAGTTTATTAGAATTTTAAGCCTTAATGATCTATTATTACTTGAAAATGTT
1 ATTTTTATTTTTGGGAGTTTAATAGAATTTTAAGCCTCAATAATCTATTATCACATGAAAATGTT
* * *
22270135 GCCTTATTTTTCAAAAAAGATTATATTTAAAAAATTCTAGTAAATTTTCCA
66 GCCTTATCTTTCAAAAAAGATCATATTTAAAAAATTCTAGTAAATATTCCA
* * *
22270186 ATTTTTGTTGTTGGGAGTTTAATAGATTTTT
1 ATTTTTATTTTTGGGAGTTTAATAGAATTTT
22270217 TTATTTTGCT
Statistics
Matches: 126, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
114 5 0.04
115 69 0.55
116 52 0.41
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (116 bp):
ATTTTTATTTTTGGGAGTTTAATAGAATTTTAAGCCTCAATAATCTATTATCACATGAAAATGTT
GCCTTATCTTTCAAAAAAGATCATATTTAAAAAATTCTAGTAAATATTCCA
Found at i:22270575 original size:24 final size:25
Alignment explanation
Indices: 22270541--22270603 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
22270531 TTTTTATAAG
* *
22270541 ATTTAGTATTTATTAATATAATAT-
1 ATTTAGCATTTATTAACATAATATA
*
22270565 ATTTAGCATTTATTAGCATAATATA
1 ATTTAGCATTTATTAACATAATATA
*
22270590 ATTTA-CATTGATTA
1 ATTTAGCATTTATTA
22270604 GAATTAGGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 29 0.85
25 5 0.15
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (25 bp):
ATTTAGCATTTATTAACATAATATA
Found at i:22288652 original size:25 final size:24
Alignment explanation
Indices: 22288612--22288698 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 24
22288602 CATGTTCATA
* *
22288612 TATGCTCATACGAGCTGTGAATCGG
1 TATGCTCACACAAGCTGT-AATCGG
* *
22288637 TATGCTCACTCAAGCTGTAGATCAG
1 TATGCTCACACAAGCTGTA-ATCGG
* * *
22288662 TATGCTCTCACAAGTTATAAATCGG
1 TATGCTCACACAAGCTGT-AATCGG
*
22288687 TATGCTCTCACA
1 TATGCTCACACA
22288699 TGCTATGGAG
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
TATGCTCACACAAGCTGTAATCGG
Found at i:22290804 original size:45 final size:48
Alignment explanation
Indices: 22290751--22290852 Score: 138
Period size: 49 Copynumber: 2.2 Consensus size: 48
22290741 TCCATATAGA
* * *
22290751 ACTACACTTCTTTTATTT-TA-TT-TTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTCATATATTTATATTTATTAGAATAAGGTATTTCAACCTT
*
22290796 ATTACACTTCATATATTTGATATTTATTAGAATAAGGTATTTCAACCTT
1 ACTACACTTCATATATTT-ATATTTATTAGAATAAGGTATTTCAACCTT
22290845 ACTACACT
1 ACTACACT
22290853 CATTCTACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 15 0.31
47 2 0.04
48 2 0.04
49 29 0.60
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (48 bp):
ACTACACTTCATATATTTATATTTATTAGAATAAGGTATTTCAACCTT
Found at i:22301024 original size:27 final size:27
Alignment explanation
Indices: 22300993--22301178 Score: 216
Period size: 27 Copynumber: 6.9 Consensus size: 27
22300983 TAAACATGAT
*
22300993 CGAAATCCCCTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
22301020 CGAAATACCTTCGATGGGGAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * *
22301047 CAAAATACTCTCGATGGGGAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
22301074 CGAAATACCCTCGATAGGG-AAAATT-C
1 CGAAATACCCTCGAT-GGGTAAAATTAC
* *
22301100 CTAAAATACCCTCGATGGATAAAATTAC
1 C-GAAATACCCTCGATGGGTAAAATTAC
* * *
22301128 CGAAATACCCTCAATAGGTGAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
22301155 CGAAATACCC-CTATAGGGTAAAAT
1 CGAAATACCCTCGAT-GGGTAAAAT
22301179 GGCTGTTATA
Statistics
Matches: 136, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.05
27 124 0.91
28 5 0.04
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (27 bp):
CGAAATACCCTCGATGGGTAAAATTAC
Found at i:22302946 original size:13 final size:13
Alignment explanation
Indices: 22302928--22302952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22302918 TTTTATTTGT
22302928 TTATTCCCACCGA
1 TTATTCCCACCGA
22302941 TTATTCCCACCG
1 TTATTCCCACCG
22302953 GCCGAATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.08, T:0.32
Consensus pattern (13 bp):
TTATTCCCACCGA
Found at i:22304983 original size:32 final size:32
Alignment explanation
Indices: 22304940--22305021 Score: 146
Period size: 32 Copynumber: 2.6 Consensus size: 32
22304930 ACGAGACTTG
*
22304940 TACAACGCATTAATTAAATGTGTATATTCATA
1 TACAACTCATTAATTAAATGTGTATATTCATA
22304972 TACAACTCATTAATTAAATGTGTATATTCATA
1 TACAACTCATTAATTAAATGTGTATATTCATA
*
22305004 TACTACTCATTAATTAAA
1 TACAACTCATTAATTAAA
22305022 AATTATTTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.39
Consensus pattern (32 bp):
TACAACTCATTAATTAAATGTGTATATTCATA
Found at i:22305207 original size:64 final size:64
Alignment explanation
Indices: 22305138--22305415 Score: 440
Period size: 64 Copynumber: 4.4 Consensus size: 64
22305128 AAATAAAATA
* * * * *
22305138 AAAATTAGATCATAACATATAATCAAGTAAACAAGTTGATTAAAAAACATATGGATAGTATATT
1 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATATGGATAATATATT
*
22305202 AAAATTGGATCATTACATATAATCAAGTAAACAAAC-TGATTAAAAAACATATGGATAATATATT
1 AAAATTGGATCATTAGATATAATCAAGTAAAC-AACTTGATTAAAAAACATATGGATAATATATT
* *
22305266 AAAATTGAATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATACGGATAATATATT
1 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATATGGATAATATATT
22305330 --AATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATATGGATAATATATT
1 AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATATGGATAATATATT
22305392 --AATTGGATCATTAGATATAATCAA
1 AAAATTGGATCATTAGATATAATCAA
22305416 CTTGATTCTA
Statistics
Matches: 203, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
62 84 0.41
63 3 0.01
64 114 0.56
65 2 0.01
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.31
Consensus pattern (64 bp):
AAAATTGGATCATTAGATATAATCAAGTAAACAACTTGATTAAAAAACATATGGATAATATATT
Found at i:22305390 original size:126 final size:125
Alignment explanation
Indices: 22305154--22305415 Score: 429
Period size: 126 Copynumber: 2.1 Consensus size: 125
22305144 AGATCATAAC
* * *
22305154 ATATAATCAAGTAAACAAGTTGATTAAAAAACATATGGATAGTATATTAAAATTGGATCATTACA
1 ATATAATCAAGTAAACAACTTGATTAAAAAACATACGGATAATATATT-AAATTGGATCATTACA
22305219 TATAATCAAGTAAACAAACTGATTAAAAAACATATGGATAATATATTAAAATTGAATCATTAG
65 TATAATCAAGTAAACAAACTGATTAAAAAACATATGGATAATATATT--AATTGAATCATTAG
*
22305282 ATATAATCAAGTAAACAACTTGATTAAAAAACATACGGATAATATATT-AATTGGATCATTAGAT
1 ATATAATCAAGTAAACAACTTGATTAAAAAACATACGGATAATATATTAAATTGGATCATTACAT
*
22305346 ATAATCAAGTAAAC-AACTTGATTAAAAAACATATGGATAATATATTAATTGGATCATTAG
66 ATAATCAAGTAAACAAAC-TGATTAAAAAACATATGGATAATATATTAATTGAATCATTAG
22305406 ATATAATCAA
1 ATATAATCAA
22305416 CTTGATTCTA
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
124 23 0.18
125 3 0.02
126 57 0.45
128 45 0.35
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (125 bp):
ATATAATCAAGTAAACAACTTGATTAAAAAACATACGGATAATATATTAAATTGGATCATTACAT
ATAATCAAGTAAACAAACTGATTAAAAAACATATGGATAATATATTAATTGAATCATTAG
Found at i:22307163 original size:44 final size:42
Alignment explanation
Indices: 22307115--22307223 Score: 109
Period size: 44 Copynumber: 2.6 Consensus size: 42
22307105 AGTATTATAT
22307115 ATTATTATTTTAGTAAATTCATATAAGAATAAGAATT-TTATTAA
1 ATTATTATTTTAGTAAATT-ATAT-AGAATAAGAATTATT-TTAA
* ** *
22307159 ATTATATATTATTATTAAATTATATTTAATAATAATTATTTTAA
1 ATTAT-TATT-TTAGTAAATTATATAGAATAAGAATTATTTTAA
22307203 ATTA-TATTTTAGT--ATTATATA
1 ATTATTATTTTAGTAAATTATATA
22307224 TTATGATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
39 7 0.12
41 4 0.07
42 4 0.07
44 22 0.39
45 10 0.18
46 9 0.16
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (42 bp):
ATTATTATTTTAGTAAATTATATAGAATAAGAATTATTTTAA
Found at i:22307202 original size:26 final size:28
Alignment explanation
Indices: 22307148--22307211 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
22307138 TAAGAATAAG
* * *
22307148 AATTTTATTAAATTATATATTATTATTA
1 AATTATATTTAATAATATATTATTATTA
22307176 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTTAATAATATATTATTATTA
22307202 AATTATATTT
1 AATTATATTT
22307212 TAGTATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 6 0.18
28 14 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AATTATATTTAATAATATATTATTATTA
Found at i:22307281 original size:108 final size:105
Alignment explanation
Indices: 22307061--22307320 Score: 301
Period size: 117 Copynumber: 2.3 Consensus size: 105
22307051 AATAAAGTAG
22307061 ATTA-TAAATTATATTTAATAATAATTATTTAAATTATATTTTACAGTATTATATATTATTATTT
1 ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTA-AGTATTATATATTATTATTT
22307125 TAGTAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
65 TAGTAAATTCATATAAGAAT---AATTTTATTAAATTATATATT
*
22307169 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTT-AGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTAAGTATTATATATTAT--TAT
22307233 TATTAGTAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATT
63 T-TTAGTAAATTCATATAAG---A---A-T---AATTTTATTAAATTATATATT
* *
22307287 -TTATTAAATTATATTTTATAACAATTATGTTAAA
1 ATTATTAAATTATATTTAATAATAATTAT-TTAAA
22307321 ATATGATTAA
Statistics
Matches: 135, Mismatches: 4, Indels: 17
0.87 0.03 0.11
Matches are distributed among these distances:
108 19 0.14
109 23 0.17
110 18 0.13
111 18 0.13
114 1 0.01
116 1 0.01
117 31 0.23
118 24 0.18
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.51
Consensus pattern (105 bp):
ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTAAGTATTATATATTATTATTTT
AGTAAATTCATATAAGAATAATTTTATTAAATTATATATT
Found at i:22307281 original size:111 final size:105
Alignment explanation
Indices: 22307061--22307264 Score: 290
Period size: 109 Copynumber: 1.9 Consensus size: 105
22307051 AATAAAGTAG
22307061 ATTA-TAAATTATATTTAATAATAATTATTTAAATTATATTTTACAGTATTATATATTATTATTT
1 ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTA-AGTATTATATATTATTATTT
*
22307125 TAGTAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
65 TAGTAAATTCATATAAGAAT---AATTTTATTAAATTATAAATT
*
22307169 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTT-AGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTAAGTATTATATATTAT--TAT
22307233 TATTAGTAAATTCATATAAGAAT-A-TTTATTAA
63 T-TTAGTAAATTCATATAAGAATAATTTTATTAA
22307265 CAATTTTATT
Statistics
Matches: 90, Mismatches: 1, Indels: 12
0.87 0.01 0.12
Matches are distributed among these distances:
106 8 0.09
107 1 0.01
108 19 0.21
109 23 0.26
110 18 0.20
111 21 0.23
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (105 bp):
ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTAAGTATTATATATTATTATTTT
AGTAAATTCATATAAGAATAATTTTATTAAATTATAAATT
Found at i:22307305 original size:15 final size:17
Alignment explanation
Indices: 22307267--22307300 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22307257 TTTATTAACA
22307267 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
22307284 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
22307301 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:22307314 original size:16 final size:15
Alignment explanation
Indices: 22307267--22307314 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
22307257 TTTATTAACA
*
22307267 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
22307284 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
22307299 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
22307315 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Done.