Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 81 of 213
Found at i:22307485 original size:39 final size:39
Alignment explanation
Indices: 22307437--22307545 Score: 128
Period size: 44 Copynumber: 2.6 Consensus size: 39
22307427 TTTTTTTCTT
* * *
22307437 ATACTATTACACCTCTATTCCATTCAACCAAACACAAGA
1 ATACCATTACGCCTCTATTCCATTCAACCAAACAAAAGA
22307476 ATACCATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGA
1 ATACCATTACGCCTCTATT-C----CATTCAACCAAACAAAAGA
22307520 ATTACCTATTACGCCTCTATTCCATT
1 A-TACC-ATTACGCCTCTATTCCATT
22307546 ACGCCTCTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
39 17 0.28
40 1 0.02
41 4 0.07
44 19 0.32
45 5 0.08
46 14 0.23
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.29
Consensus pattern (39 bp):
ATACCATTACGCCTCTATTCCATTCAACCAAACAAAAGA
Found at i:22307520 original size:44 final size:46
Alignment explanation
Indices: 22307457--22307547 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
22307447 ACCTCTATTC
*
22307457 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
22307501 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
22307547 C
1 C
22307548 GCCTCTATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 19 0.43
45 4 0.09
46 21 0.48
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
Found at i:22307548 original size:16 final size:16
Alignment explanation
Indices: 22307527--22307563 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
22307517 AGAATTACCT
22307527 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
22307543 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
22307559 ATTAC
1 ATTAC
22307564 AGCGAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:22309452 original size:32 final size:31
Alignment explanation
Indices: 22309416--22309548 Score: 117
Period size: 32 Copynumber: 4.2 Consensus size: 31
22309406 TGGCACAAAG
22309416 CCATCAGTACTAGTGATATGATCAGTACACAA
1 CCATCAGTAC-AGTGATATGATCAGTACACAA
* * * *
22309448 CCATCAGTAACGGTAACATGATCGGTACA-AA
1 CCATCAGT-ACAGTGATATGATCAGTACACAA
* * *
22309479 GCCATTAGTAGCAGTGATATGAT-TGCCACACAA
1 -CCATCAGTA-CAGTGATATGATCAG-TACACAA
* *
22309512 CCATCAGTAACAGTGAAATGATCGGTACACAA
1 CCATCAGT-ACAGTGATATGATCAGTACACAA
22309544 CCATC
1 CCATC
22309549 GGTAATGGTA
Statistics
Matches: 80, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
31 4 0.05
32 70 0.88
33 6 0.08
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (31 bp):
CCATCAGTACAGTGATATGATCAGTACACAA
Found at i:22309495 original size:64 final size:62
Alignment explanation
Indices: 22309410--22309614 Score: 206
Period size: 64 Copynumber: 3.2 Consensus size: 62
22309400 TGTGATTGGC
22309410 ACAAAGCCATCAGTACTAGTGATATGATCAGTACACAACCATCAGTAACGGTAACATGATCGGT
1 ACAAAGCCATCAGTAC-AGTGATATGATCAG-ACACAACCATCAGTAACGGTAACATGATCGGT
* * *
22309474 ACAAAGCCATTAGTAGCAGTGATATGATTGC-CACACAACCATCAGTAACAGTGAA-ATGATCGG
1 ACAAAGCCATCAGTA-CAGTGATATGA-T-CAGACACAACCATCAGTAACGGT-AACATGATCGG
22309537 T
62 T
* *
22309538 ACACAA-CCATCGGTA-ATGGTAATATGATCA-ACACAAAGCCATCAGTAACGGT-ACTATGATC
1 ACA-AAGCCATCAGTACA--GTGATATGATCAGACAC-AA-CCATCAGTAACGGTAAC-ATGATC
*
22309599 GGC
60 GGT
22309602 ACAAAGCCATCAG
1 ACAAAGCCATCAG
22309615 CAGCATCGCA
Statistics
Matches: 119, Mismatches: 9, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
62 7 0.06
63 5 0.04
64 100 0.84
65 6 0.05
66 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.20
Consensus pattern (62 bp):
ACAAAGCCATCAGTACAGTGATATGATCAGACACAACCATCAGTAACGGTAACATGATCGGT
Found at i:22309559 original size:96 final size:96
Alignment explanation
Indices: 22309385--22309614 Score: 259
Period size: 96 Copynumber: 2.4 Consensus size: 96
22309375 ATGTCTATAA
* * *
22309385 CCATAAGT-GCAGTAATGTGATTGGCACAAAGCCATCAGTACTAGTGATATGATCAGTACACAAC
1 CCATAAGTAGCAGTAATATGATTGCCACAAAGCCATCAGTACTAGTGAAATGATCAGTACACAAC
***
22309449 CATCAGTAACGGTAACATGATCGGTACAAAG
66 CATCAGTAACGGTAACATGATCAACACAAAG
* * *
22309480 CCATTAGTAGCAGTGATATGATTGCCACACAA-CCATCAGTAAC-AGTGAAATGATCGGTACACA
1 CCATAAGTAGCAGTAATATGATTGCCACA-AAGCCATCAGT-ACTAGTGAAATGATCAGTACACA
* * *
22309543 ACCATCGGTAATGGTAATATGATCAACACAAAG
64 ACCATCAGTAACGGTAACATGATCAACACAAAG
* * * * * *
22309576 CCATCAGTAACGGTACTATGATCGGCACAAAGCCATCAG
1 CCATAAGTAGCAGTAATATGATTGCCACAAAGCCATCAG
22309615 CAGCATCGCA
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
95 9 0.08
96 99 0.88
97 4 0.04
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (96 bp):
CCATAAGTAGCAGTAATATGATTGCCACAAAGCCATCAGTACTAGTGAAATGATCAGTACACAAC
CATCAGTAACGGTAACATGATCAACACAAAG
Found at i:22309565 original size:32 final size:32
Alignment explanation
Indices: 22309431--22309614 Score: 153
Period size: 32 Copynumber: 5.8 Consensus size: 32
22309421 AGTACTAGTG
*
22309431 ATATGATCAGTACACAACCATCAGTAACGGTA
1 ATATGATCGGTACACAACCATCAGTAACGGTA
* * * * *
22309463 ACATGATCGGTACA-AAGCCATTAGTAGCAGTG
1 ATATGATCGGTACACAA-CCATCAGTAACGGTA
* ** *
22309495 ATATGATTGCCACACAACCATCAGTAACAGTGA
1 ATATGATCGGTACACAACCATCAGTAACGGT-A
* *
22309528 A-ATGATCGGTACACAACCATCGGTAATGGTA
1 ATATGATCGGTACACAACCATCAGTAACGGTA
*
22309559 ATATGATC--AACACAAAGCCATCAGTAACGGTA
1 ATATGATCGGTACAC-AA-CCATCAGTAACGGTA
* *
22309591 CTATGATCGGCACA-AAGCCATCAG
1 ATATGATCGGTACACAA-CCATCAG
22309615 CAGCATCGCA
Statistics
Matches: 120, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
30 4 0.03
31 6 0.05
32 104 0.87
33 3 0.03
34 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (32 bp):
ATATGATCGGTACACAACCATCAGTAACGGTA
Found at i:22309697 original size:26 final size:26
Alignment explanation
Indices: 22309619--22309698 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
22309609 CATCAGCAGC
*
22309619 ATCGCAGCAAAGTTGCCAGAAACAAT
1 ATCGCAGCAAAGTTGCCAGAAACAGT
* * * *
22309645 ATCGTAGTAAAGCTGCCAGCAACAGT
1 ATCGCAGCAAAGTTGCCAGAAACAGT
* *
22309671 ATCGCAGCAAAGTTGCCAGTAATAGT
1 ATCGCAGCAAAGTTGCCAGAAACAGT
22309697 AT
1 AT
22309699 ATGTGGCCAA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (26 bp):
ATCGCAGCAAAGTTGCCAGAAACAGT
Found at i:22309857 original size:24 final size:25
Alignment explanation
Indices: 22309825--22309871 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
22309815 ATCAGTCGTT
22309825 CAAATCACAGAAAAATCAGTCATAC
1 CAAATCACAGAAAAATCAGTCATAC
**
22309850 CAAA-CACAGACGAATCAGTCAT
1 CAAATCACAGAAAAATCAGTCAT
22309872 TTAACCATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.49, C:0.26, G:0.11, T:0.15
Consensus pattern (25 bp):
CAAATCACAGAAAAATCAGTCATAC
Found at i:22309979 original size:27 final size:27
Alignment explanation
Indices: 22309943--22310155 Score: 236
Period size: 27 Copynumber: 8.0 Consensus size: 27
22309933 GGCATTATGG
*
22309943 TCATTTTACCCTACAGGGGTGTTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
22309970 TCATTTTACCCTACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
* *
22309997 TCTTTTTACCCTATAGGGGTATTAC-A
1 TCATTTTACCCTACAGGGGTATTACGA
*
22310023 GTCATTCTACCCTACAGGGGTATTAC-A
1 -TCATTTTACCCTACAGGGGTATTACGA
* * *
22310050 GTCATTTTACCTTAAAGGGGTATTACGG
1 -TCATTTTACCCTACAGGGGTATTACGA
* *
22310078 T-ATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGA
* * * *
22310104 TTATTTTACCCTATA-GGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGA
* * *
22310130 TCAGTTTATCCTACAGGGGCATTACG
1 TCATTTTACCCTACAGGGGTATTACG
22310156 GTCAAGATAT
Statistics
Matches: 163, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 46 0.28
27 117 0.72
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGA
Found at i:22310110 original size:53 final size:54
Alignment explanation
Indices: 22309936--22310159 Score: 281
Period size: 54 Copynumber: 4.2 Consensus size: 54
22309926 CCACCAGGGC
* * * *
22309936 ATTATGGTCATTTTACCCTACAGGGGTGTTACGATCATTTTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGT
* * * *
22309990 ATTACGATCTTTTTACCCTATAGGGGTATTACAGTCATTCTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGT
* * * *
22310044 ATTACAGTCATTTTACCTTAAAGGGGTATTACGGT-ATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGT
* * * * *
22310097 ATTACGGTTATTTTACCCTATA-GGGTATTATGGTCAGTTTATCCTACAGGGGC
1 ATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGT
22310150 ATTACGGTCA
1 ATTACGGTCA
22310160 AGATATCGAC
Statistics
Matches: 143, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
52 11 0.08
53 57 0.40
54 75 0.52
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (54 bp):
ATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAGGGGT
Found at i:22311580 original size:21 final size:21
Alignment explanation
Indices: 22311538--22311582 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
22311528 AAGTTTTTGG
*
22311538 TAGGGGTGGTGTACAGCTACC
1 TAGGGGTGGTGTACAGCCACC
*
22311559 TAGGGGTGGT-TAGTAGCCACC
1 TAGGGGTGGTGTA-CAGCCACC
22311580 TAG
1 TAG
22311583 AGGTCGTGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.24
Consensus pattern (21 bp):
TAGGGGTGGTGTACAGCCACC
Found at i:22314359 original size:10 final size:10
Alignment explanation
Indices: 22314337--22314383 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
22314327 CTGCCTATCG
*
22314337 AAAA-TAATC
1 AAAATTAATT
22314346 AAAATTAATT
1 AAAATTAATT
22314356 AAAATTAATTAT
1 AAAATTAA-T-T
22314368 AAAATTAATT
1 AAAATTAATT
22314378 AAAATT
1 AAAATT
22314384 CAACATGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 4 0.12
10 19 0.56
11 2 0.06
12 9 0.26
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTAATT
Found at i:22314372 original size:12 final size:12
Alignment explanation
Indices: 22314346--22314378 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
22314336 GAAAATAATC
22314346 AAAATTAA-T-T
1 AAAATTAATTAT
22314356 AAAATTAATTAT
1 AAAATTAATTAT
22314368 AAAATTAATTA
1 AAAATTAATTA
22314379 AAATTCAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 1 0.05
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:22316994 original size:15 final size:16
Alignment explanation
Indices: 22316965--22316996 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
22316955 ATTTCCTATT
22316965 AATTTATTAAAATAAA
1 AATTTATTAAAATAAA
22316981 AATTTATT-AAATAAA
1 AATTTATTAAAATAAA
22316996 A
1 A
22316997 TATGATCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTTATTAAAATAAA
Found at i:22323973 original size:25 final size:25
Alignment explanation
Indices: 22323927--22323976 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22323917 AAGGGAATGA
* * *
22323927 AGAATAATGGAAGGGAAATGAAGAG
1 AGAAAAATGAAAGAGAAATGAAGAG
*
22323952 AGAAAAATGAAAGAGAAGTGAAGAG
1 AGAAAAATGAAAGAGAAATGAAGAG
22323977 TTGAGATGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.34, T:0.10
Consensus pattern (25 bp):
AGAAAAATGAAAGAGAAATGAAGAG
Found at i:22334295 original size:24 final size:24
Alignment explanation
Indices: 22334268--22334320 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
22334258 TAATCAATGT
* *
22334268 TAAATATATTATGTTAATAAATTC
1 TAAATATATTATATTAATAAATAC
22334292 TAAATATATTATATTAATAAATAC
1 TAAATATATTATATTAATAAATAC
22334316 TAAAT
1 TAAAT
22334321 TTTCTAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (24 bp):
TAAATATATTATATTAATAAATAC
Found at i:22335629 original size:17 final size:17
Alignment explanation
Indices: 22335607--22335653 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 17
22335597 AGAGAAAAAC
22335607 AAAATAAAAAAGGGAA-G
1 AAAATAAAAAA-GGAAGG
22335624 AAAATAATAAAAGGAAGGG
1 AAAATAA-AAAAGGAA-GG
22335643 AAAATAAAAAA
1 AAAATAAAAAA
22335654 ACTTTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.41
18 8 0.30
19 8 0.30
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (17 bp):
AAAATAAAAAAGGAAGG
Found at i:22335904 original size:6 final size:6
Alignment explanation
Indices: 22335893--22335923 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
22335883 TTACACTCCC
22335893 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
22335924 TTTATTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:22337103 original size:16 final size:17
Alignment explanation
Indices: 22337084--22337124 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
22337074 CATTATAAAA
*
22337084 ACAAAAATT-TATAGTG
1 ACAAAAATTGTATAGTC
*
22337100 ACAAAAATTGTATCGTC
1 ACAAAAATTGTATAGTC
22337117 ACAAAAAT
1 ACAAAAAT
22337125 GGTTAATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (17 bp):
ACAAAAATTGTATAGTC
Found at i:22340361 original size:27 final size:26
Alignment explanation
Indices: 22340324--22340651 Score: 352
Period size: 27 Copynumber: 12.2 Consensus size: 26
22340314 TTACACTGTT
*
22340324 ATGATCGAAATAACCCCATAGGGTAAA
1 ATGACCGAAAT-ACCCCATAGGGTAAA
* * **
22340351 ATGAACAAAATACCCCCATAGAATAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
22340378 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
*
22340405 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
22340432 ATGATCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
22340459 ATAACCAAAATACCCCATAGGGTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
* *
22340485 ATGACCGAAATACCCTTATAAGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
*
22340512 ATAACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* * *
22340539 TTGACCAAAATACCCTGATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
*
22340566 ATGACCGAAATACCCCTATGGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
22340593 ATGATCGAAATACCCCCGA-AAGGTAAA
1 ATGACCGAAATA-CCCC-ATAGGGTAAA
*
22340620 ATGACCAAAATACCTCCATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
*
22340647 TTGAC
1 ATGAC
22340652 TGTTATACCC
Statistics
Matches: 255, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
26 33 0.13
27 214 0.84
28 8 0.03
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:22340664 original size:81 final size:80
Alignment explanation
Indices: 22340324--22340651 Score: 419
Period size: 81 Copynumber: 4.1 Consensus size: 80
22340314 TTACACTGTT
* * * * *
22340324 ATGATCGAAATAACCCC-ATAGGGTAAAATGAACAAAATACCCCCAT-AGAATAAAATGACCGAA
1 ATGACCGAAAT-ACCCCTATAGGGTAAAATGATCGAAATACCCCCATAAG-GTAAAATGACCAAA
22340387 ATACCCCCATAGGGTAAA
64 ATA-CCCCATAGGGTAAA
* * * *
22340405 ATGATCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATAACCAAAAT
1 ATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCCATAAGGTAAAATGACCAAAAT
22340470 ACCCCATAGGGTAAA
66 ACCCCATAGGGTAAA
* * * * * *
22340485 ATGACCGAAATACCCTTATAAGGTAAAATAACCGAAATACCCCCATAGGGTAAATTGACCAAAAT
1 ATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCCATAAGGTAAAATGACCAAAAT
*
22340550 ACCCTGATAGGGTAAA
66 ACCC-CATAGGGTAAA
*
22340566 ATGACCGAAATACCCCTATGGGGTAAAATGATCGAAATACCCCCGA-AAGGTAAAATGACCAAAA
1 ATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCC-ATAAGGTAAAATGACCAAAA
22340630 TACCTCCATAGGGTAAA
65 TACC-CCATAGGGTAAA
*
22340647 TTGAC
1 ATGAC
22340652 TGTTATACCC
Statistics
Matches: 216, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
80 78 0.36
81 134 0.62
82 4 0.02
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (80 bp):
ATGACCGAAATACCCCTATAGGGTAAAATGATCGAAATACCCCCATAAGGTAAAATGACCAAAAT
ACCCCATAGGGTAAA
Found at i:22340850 original size:26 final size:26
Alignment explanation
Indices: 22340814--22340894 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 26
22340804 TGGAGGAAGT
* *
22340814 ATACTGTTACTGGCAACTTTCCTGCG
1 ATACTGTTACTAGCAACTTTGCTGCG
* *
22340840 ATACTGTTACTATCAGCTTTGCTGCG
1 ATACTGTTACTAGCAACTTTGCTGCG
* *
22340866 ATACTATTACTAGCAACTTTGCTGTG
1 ATACTGTTACTAGCAACTTTGCTGCG
22340892 ATA
1 ATA
22340895 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTAGCAACTTTGCTGCG
Found at i:22341049 original size:28 final size:28
Alignment explanation
Indices: 22341008--22341197 Score: 292
Period size: 28 Copynumber: 6.8 Consensus size: 28
22340998 CTAGTAACTA
*
22341008 TATTGGGCTAAGGCCCACACTGTTATTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
* * *
22341036 TATTGGGCTGAGGCCCACACTATTATTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
* *
22341064 TATTGGGCTAAGGCCCTCACTGTTATTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
22341092 TATTGGGCTAAGGCCCACACTGTTACTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
22341120 TATTGGGCTAAGGCCCACACTGTTACTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
* *
22341148 TATTGGGCTAATGCCCACACTATTACTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
*
22341176 TATCGGGCTAAGG-CCACACTGT
1 TATTGGGCTAAGGCCCACACTGT
22341198 ACCGTTACTG
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 8 0.05
28 142 0.95
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (28 bp):
TATTGGGCTAAGGCCCACACTGTTACTG
Found at i:22353210 original size:27 final size:28
Alignment explanation
Indices: 22353174--22353240 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
22353164 NNNNNNNNNT
22353174 AGGTAAAATGACT-AAAATACCCCCATA
1 AGGTAAAATGACTCAAAATACCCCCATA
*
22353201 GGGTAAAATGA-TCAAAATACCCCCATA
1 AGGTAAAATGACTCAAAATACCCCCATA
*
22353228 AGGTAAAGTGACT
1 AGGTAAAATGACT
22353241 GTTATACCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGTAAAATGACTCAAAATACCCCCATA
Found at i:22355882 original size:40 final size:39
Alignment explanation
Indices: 22355821--22355968 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 39
22355811 AGCGGCGCTT
* * *
22355821 TTAGCGGCGTTTGGACAAAAAACGCCACTAACAGTCGAGCA
1 TTAGCGGCGTTT-TACAAAAAACGCCGCTAA-AATCGAGCA
* *
22355862 TTAGCGGCATTTTACAAAAAACGCCGCAAAATATCGAGCA
1 TTAGCGGCGTTTTACAAAAAACGCCGCTAAA-ATCGAGCA
* * * *
22355902 TTAGCGACGTTACATA-AAAAAACGCCGCTAAAACCAAGCA
1 TTAGCGGCGTT--TTACAAAAAACGCCGCTAAAATCGAGCA
*
22355942 TTAGCGGCGTTTTACAAAAAGCGCCGC
1 TTAGCGGCGTTTTACAAAAAACGCCGC
22355969 AATAGAGTAA
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 12 0.13
40 47 0.53
41 26 0.29
42 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.18
Consensus pattern (39 bp):
TTAGCGGCGTTTTACAAAAAACGCCGCTAAAATCGAGCA
Found at i:22356286 original size:41 final size:42
Alignment explanation
Indices: 22356241--22356333 Score: 113
Period size: 41 Copynumber: 2.3 Consensus size: 42
22356231 TATGGAGAAT
* * *
22356241 CGCCGCG-AATGT-TCCGGTCTATAGCGGCGTTTGTGTAACAG
1 CGCCGCGTAAT-TCTCCGGTCTATAGCAGCGTTTGTGTAAAAA
*
22356282 CGCCG-GTAATTCTTCGGTCTATAGCAGCGTTTGTGTAAAAA
1 CGCCGCGTAATTCTCCGGTCTATAGCAGCGTTTGTGTAAAAA
22356323 CGCCGC-TAATT
1 CGCCGCGTAATT
22356334 AGAAAGTCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 2 0.04
41 43 0.96
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (42 bp):
CGCCGCGTAATTCTCCGGTCTATAGCAGCGTTTGTGTAAAAA
Found at i:22356343 original size:41 final size:41
Alignment explanation
Indices: 22356257--22356343 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 41
22356247 GAATGTTCCG
* * * * *****
22356257 GTCTATAGCGGCGTTTGTGTAACAGCGCCGGTAATTCTTCG
1 GTCTATAGCAGCGTTTGTGTAAAAACGCCGCTAATTAGAAA
22356298 GTCTATAGCAGCGTTTGTGTAAAAACGCCGCTAATTAGAAA
1 GTCTATAGCAGCGTTTGTGTAAAAACGCCGCTAATTAGAAA
22356339 GTCTA
1 GTCTA
22356344 AAATATTATT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (41 bp):
GTCTATAGCAGCGTTTGTGTAAAAACGCCGCTAATTAGAAA
Found at i:22358794 original size:16 final size:16
Alignment explanation
Indices: 22358770--22358800 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22358760 ATTTTTTCTC
22358770 TTCTAAAATCCCTAAG
1 TTCTAAAATCCCTAAG
*
22358786 TTCTGAAATCCCTAA
1 TTCTAAAATCCCTAA
22358801 CTCCATTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (16 bp):
TTCTAAAATCCCTAAG
Found at i:22362490 original size:21 final size:21
Alignment explanation
Indices: 22362466--22362505 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22362456 AGCATATGCG
22362466 GCAGCAAGAGAAGCAGAGGCA
1 GCAGCAAGAGAAGCAGAGGCA
* *
22362487 GCAGCGAGAGAAGCTGAGG
1 GCAGCAAGAGAAGCAGAGG
22362506 TTCAACGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.42, T:0.03
Consensus pattern (21 bp):
GCAGCAAGAGAAGCAGAGGCA
Found at i:22362500 original size:87 final size:86
Alignment explanation
Indices: 22362389--22362586 Score: 247
Period size: 87 Copynumber: 2.3 Consensus size: 86
22362379 ACACAACTTA
* * * *
22362389 AAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAG-GTACAAC
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAACAACTCCAGAGT--AAC
*
22362452 TTAAAGCATATGCGGCAGCAAGAG
63 TTAAAGCAGATGCGGCAGCAAGAG
* *
22362476 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAACAACTCCAGCAGTAGCTT
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAACAACTCCAG-AGTAACTT
**
22362541 AAAGCAGATGCGGCAGTGAGAG
65 AAAGCAGATGCGGCAGCAAGAG
* *
22362563 AAGCAGAGGCTGCAGCGAGGGAAG
1 AAGCAGAGGCAGCAGCGAGAGAAG
22362587 TAGAGGCTAC
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
87 91 0.94
88 4 0.04
89 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.32, T:0.12
Consensus pattern (86 bp):
AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAACAACTCCAGAGTAACTTA
AAGCAGATGCGGCAGCAAGAG
Found at i:22362577 original size:21 final size:21
Alignment explanation
Indices: 22362542--22362611 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
22362532 CAGTAGCTTA
* * *
22362542 AAGCAGATGCGGCAGTGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
*
22362563 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGAG
* *
22362584 AAGTAGAGGCTACAGCGA-AGG
1 AAGCAGAGGCTGCAGCGAGA-G
22362605 AAGCAGA
1 AAGCAGA
22362612 ACAGCTTAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.36, C:0.16, G:0.41, T:0.07
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:22362962 original size:43 final size:43
Alignment explanation
Indices: 22362915--22363208 Score: 364
Period size: 43 Copynumber: 6.8 Consensus size: 43
22362905 GTTTTTCTAA
*
22362915 AAGCGCCGCTAAAAACCATGAG-CTATAGCGGCGTTTGT-TGGTT
1 AAGCGCCGCTAAAGACCATG-GTCTATAGCGGCGTTT-TATGGTT
* *
22362958 AAGCGCCTCTAAAGACCATGGTCTATAGTGGCGTTTGTATGG-T
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTT-TATGGTT
* * * *
22363001 AAGCGCCACTAAAGACCAAGATCTATAGCGGCGTTTTATGGGT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTTATGGTT
* *
22363044 AAGCGCCACTAAA-AGCCATGGGCTATAGCGGCGTTTTATGGGTT
1 AAGCGCCGCTAAAGA-CCATGGTCTATAGCGGCGTTTTAT-GGTT
* * *
22363088 -AGTGCCGCTAAAGACCATGGTCTATAGCCGCGTTTTATGGAT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTTATGGTT
* * *
22363130 AAGCGCTGCTAAAGACCATGGTCTATAGCGGCGTTTGATGGCT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTTATGGTT
*
22363173 AAGCGCCGCTAAAGACCCTGGTCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTT
22363209 ATTATAAAAA
Statistics
Matches: 221, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.05
43 204 0.92
44 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (43 bp):
AAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTTTATGGTT
Found at i:22372895 original size:19 final size:19
Alignment explanation
Indices: 22372871--22372908 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
22372861 TCTGGAAATG
22372871 TGAAAA-ATGAAATATTTTT
1 TGAAAATATGAAAT-TTTTT
22372890 TGAAAATATGAAATTTTTT
1 TGAAAATATGAAATTTTTT
22372909 ATCTGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (19 bp):
TGAAAATATGAAATTTTTT
Found at i:22377602 original size:23 final size:23
Alignment explanation
Indices: 22377559--22377602 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
22377549 AAAAATATTT
*
22377559 TTTCAAAAAATTAATTTTAAAGA
1 TTTCAAAAAATTAATTCTAAAGA
*
22377582 TTTCAAATAATT-ATTACTAAA
1 TTTCAAAAAATTAATT-CTAAA
22377603 AATAATCAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (23 bp):
TTTCAAAAAATTAATTCTAAAGA
Found at i:22381394 original size:44 final size:43
Alignment explanation
Indices: 22381291--22381396 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
22381281 GTGGTGCTTA
* * * *
22381291 TCCTACAAATGCCACTATAGATCATGATTTTTAGCGGCACTTT
1 TCCTACAAATGCCGCTATAGATCATCAGTTTTAGCGACACTTT
* *
22381334 TCCCACAAATGCCGCTATAGATCATCAGTTTTAGCGACGCTTTT
1 TCCTACAAATGCCGCTATAGATCATCAGTTTTAGCGACAC-TTT
*
22381378 TCGTACAAATGCCGCTATA
1 TCCTACAAATGCCGCTATA
22381397 AAACATACCT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
43 34 0.63
44 20 0.37
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (43 bp):
TCCTACAAATGCCGCTATAGATCATCAGTTTTAGCGACACTTT
Found at i:22381772 original size:43 final size:43
Alignment explanation
Indices: 22381697--22381787 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
22381687 ACATATGCAA
* * * * *
22381697 GGTAATAAAACATACAATGCGTTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTAAATCAAGGAAATCTT
* *
22381740 GGTAATAAAAGATATAATACATTTACTAAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATTTACTAAATCAAGGAAATCTT
22381783 -GTAAT
1 GGTAAT
22381788 GAACTCAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 5 0.12
43 36 0.88
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTAAATCAAGGAAATCTT
Found at i:22385914 original size:7 final size:7
Alignment explanation
Indices: 22385904--22385934 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22385894 CTCTAACTCT
22385904 TAACCCC
1 TAACCCC
22385911 TAACCCC
1 TAACCCC
*
22385918 TAACTCC
1 TAACCCC
22385925 TAACCCC
1 TAACCCC
22385932 TAA
1 TAA
22385935 ACATTAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.19
Consensus pattern (7 bp):
TAACCCC
Found at i:22387919 original size:123 final size:123
Alignment explanation
Indices: 22387718--22387941 Score: 299
Period size: 123 Copynumber: 1.8 Consensus size: 123
22387708 CAAAAAATGT
* ** * *
22387718 CGCTAAAAACCCAAGCATTAGCGGTGCTTTTTCAAAAATGCCGCTAAAACCCCGAGCATTAGCGA
1 CGCTAAAAACCCAAGCATTAGCGGCGCTTCATAAAAAACGCCGCTAAAACCCCGAGCATTAGCGA
** *
22387783 CGCTTTTCTAAAAATGCTGCTAAAACCC-CGAGCATTAGTGGCGCTTTTCTAAAAACGC
66 CGCTTTTCTAAAAACACAGCTAAAACCCAC-AGCATTAGTGGCGCTTTTCTAAAAACGC
* * * * *
22387841 CGCTAAAACCCCGAGCATTAGTGGCGCTTCATAAAAAACGCCGCTAAAACCTCGAGCATTAGCGG
1 CGCTAAAAACCCAAGCATTAGCGGCGCTTCATAAAAAACGCCGCTAAAACCCCGAGCATTAGCGA
22387906 CGCTTTT-TAAAAAACACAGCTAAAACCCACAGCATT
66 CGCTTTTCT-AAAAACACAGCTAAAACCCACAGCATT
22387942 GGCAGCGCTA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 1 0.01
123 84 0.98
124 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.21
Consensus pattern (123 bp):
CGCTAAAAACCCAAGCATTAGCGGCGCTTCATAAAAAACGCCGCTAAAACCCCGAGCATTAGCGA
CGCTTTTCTAAAAACACAGCTAAAACCCACAGCATTAGTGGCGCTTTTCTAAAAACGC
Found at i:22387931 original size:41 final size:40
Alignment explanation
Indices: 22387718--22387950 Score: 261
Period size: 41 Copynumber: 5.7 Consensus size: 40
22387708 CAAAAAATGT
* * * *
22387718 CGCTAAAAACCCAAGCATTAGCGGTGCTTTTTCAAAAATGC
1 CGCTAAAACCCCGAGCATTAGCGGCGCTTTTT-AAAAACGC
* *
22387759 CGCTAAAACCCCGAGCATTAGCGACGCTTTTCTAAAAATGC
1 CGCTAAAACCCCGAGCATTAGCGGCGCTTTT-TAAAAACGC
* *
22387800 TGCTAAAACCCCGAGCATTAGTGGCGCTTTTCTAAAAACGC
1 CGCTAAAACCCCGAGCATTAGCGGCGCTTTT-TAAAAACGC
* * *
22387841 CGCTAAAACCCCGAGCATTAGTGGCGCTTCATAAAAAACGC
1 CGCTAAAACCCCGAGCATTAGCGGCGCTT-TTTAAAAACGC
* *
22387882 CGCTAAAACCTCGAGCATTAGCGGCGCTTTTTAAAAAACAC
1 CGCTAAAACCCCGAGCATTAGCGGCGCTTTTT-AAAAACGC
* * *
22387923 AGCTAAAACCCAC-AGCATTGGCAGCGCT
1 CGCTAAAACCC-CGAGCATTAGCGGCGCT
22387951 ACTCCAAAAA
Statistics
Matches: 168, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
40 1 0.01
41 164 0.98
42 3 0.02
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (40 bp):
CGCTAAAACCCCGAGCATTAGCGGCGCTTTTTAAAAACGC
Found at i:22387970 original size:82 final size:79
Alignment explanation
Indices: 22387707--22387970 Score: 262
Period size: 82 Copynumber: 3.2 Consensus size: 79
22387697 TGCGGCGCAT
* * * *
22387707 TCAAAAAATGTCGCTAAAAACCCAAGCATTAGCGGTGCTTTTTCAAAAATGCCGCTAAAACCCCG
1 TCAAAAAATGCCGCT-AAAACCCGAGCATTAGCGGCGCTTTTT-AAAAACGCCGCTAAAACCCCG
*
22387772 AGCATTAGCGACGCTTT
64 AGCATTAGCG-CGCTTC
* * *
22387789 TCTAAAAATGCTGCTAAAACCCCGAGCATTAGTGGCGCTTTTCTAAAAACGCCGCTAAAACCCCG
1 TCAAAAAATGCCGCTAAAA-CCCGAGCATTAGCGGCGCTTTT-TAAAAACGCCGCTAAAACCCCG
*
22387854 AGCATTAGTGGCGCTTC
64 AGCATTAG-CGCGCTTC
* * *
22387871 AT-AAAAAACGCCGCTAAAACCTCGAGCATTAGCGGCGCTTTTTAAAAAACACAGCTAAAACCCA
1 -TCAAAAAATGCCGCTAAAACC-CGAGCATTAGCGGCGCTTTTT-AAAAACGCCGCTAAAACCC-
* *
22387935 C-AGCATTGGCAGCGCTAC
62 CGAGCATTAGC-GCGCTTC
* * *
22387953 TCCAAAAATACCACTAAA
1 TCAAAAAATGCCGCTAAA
22387971 GCCCCCGATA
Statistics
Matches: 151, Mismatches: 22, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
81 8 0.05
82 139 0.92
83 4 0.03
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (79 bp):
TCAAAAAATGCCGCTAAAACCCGAGCATTAGCGGCGCTTTTTAAAAACGCCGCTAAAACCCCGAG
CATTAGCGCGCTTC
Found at i:22387970 original size:123 final size:123
Alignment explanation
Indices: 22387751--22387975 Score: 274
Period size: 123 Copynumber: 1.8 Consensus size: 123
22387741 GTGCTTTTTC
* ** *
22387751 AAAAATGCCGCTAAAACCCCGAGCATTAGCGACGCTTTTCTAAAAATGCTGCTAAAACCCCGAGC
1 AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCTTTTCTAAAAACACAGCTAAAACCCCGAGC
** ** * * *
22387816 ATTAGTGGCGCTTTTCTAAAAACGCCGCTAAAACCCCGAGCATTAGTGGCGCTTCATA
66 ATTAGCAGCGCTACTCCAAAAACACCACTAAAACCCCGAGCATTAGTGGCGCTTCATA
* *
22387874 AAAAACGCCGCTAAAACCTCGAGCATTAGCGGCGCTTTT-TAAAAAACACAGCTAAAACCCAC-A
1 AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCTTTTCT-AAAAACACAGCTAAAACCC-CGA
* * *
22387937 GCATTGGCAGCGCTACTCCAAAAATACCACTAAAGCCCC
64 GCATTAGCAGCGCTACTCCAAAAACACCACTAAAACCCC
22387976 CGATAGGTCA
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
122 1 0.01
123 82 0.98
124 1 0.01
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (123 bp):
AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCTTTTCTAAAAACACAGCTAAAACCCCGAGC
ATTAGCAGCGCTACTCCAAAAACACCACTAAAACCCCGAGCATTAGTGGCGCTTCATA
Found at i:22391343 original size:45 final size:45
Alignment explanation
Indices: 22391263--22391485 Score: 227
Period size: 45 Copynumber: 5.0 Consensus size: 45
22391253 ACCGTTACAT
* * * * *
22391263 GGTGG-ATCAGCATATAG-CACCACCCTTATAATCAATTATATTC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
* ** *
22391306 GGTGGAATCAACACATAGAAACCACCTTTATTTTCAATGAT-TTC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
* * * *
22391350 TGGTGGAGTCAGTACATAGAAACCACCTTTATAATCAATGGTACAC
1 -GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
* * * * *
22391396 GGTGGAATCAGCATATAGCAACCACCGTTATAATCAATGGTACCC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
* * *
22391441 AGTGGAATCAGCACATAGCAACCATCTTTATAATCAATGATACTC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
22391486 AGTACACGTA
Statistics
Matches: 149, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
43 5 0.03
44 13 0.09
45 130 0.87
46 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGAAACCACCTTTATAATCAATGATACTC
Found at i:22399853 original size:33 final size:33
Alignment explanation
Indices: 22399811--22399911 Score: 175
Period size: 33 Copynumber: 3.1 Consensus size: 33
22399801 GTTAACTTGG
* *
22399811 TATGCCATTATTTCATAATAGAGTTACTGTGTA
1 TATGCCATTATTTCATAACAGAGTTACTGTGCA
22399844 TATGCCATTATTTCATAACAGAGTTACTGTGCA
1 TATGCCATTATTTCATAACAGAGTTACTGTGCA
*
22399877 TGTGCCATTATTTCATAACAGAGTTACTGTGCA
1 TATGCCATTATTTCATAACAGAGTTACTGTGCA
22399910 TA
1 TA
22399912 CTTTTGACTT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (33 bp):
TATGCCATTATTTCATAACAGAGTTACTGTGCA
Found at i:22403015 original size:24 final size:23
Alignment explanation
Indices: 22402987--22403033 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
22402977 GTAATTTTTA
22402987 ATTTTTAAATAATTTTTAAAATTT
1 ATTTTTAAA-AATTTTTAAAATTT
* *
22403011 ATTTTTAAAATTTTTTTAAATTT
1 ATTTTTAAAAATTTTTAAAATTT
22403034 TAAAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATTTTTAAAAATTTTTAAAATTT
Found at i:22403016 original size:13 final size:13
Alignment explanation
Indices: 22402998--22403027 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22402988 TTTTTAAATA
22402998 ATTTTTAAAATTT
1 ATTTTTAAAATTT
22403011 ATTTTTAAAATTT
1 ATTTTTAAAATTT
22403024 -TTTT
1 ATTTT
22403028 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTTTAAAATTT
Found at i:22403035 original size:24 final size:24
Alignment explanation
Indices: 22402982--22403035 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
22402972 ACTTTGTAAT
22402982 TTTTAATTTTTAAATAATTTTTAAA
1 TTTT-ATTTTTAAATAATTTTTAAA
* *
22403007 ATTTATTTTTAAA-ATTTTTTTAAA
1 TTTTATTTTTAAATA-ATTTTTAAA
22403031 TTTTA
1 TTTTA
22403036 AAAATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 21 0.84
25 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTATTTTTAAATAATTTTTAAA
Found at i:22411479 original size:3 final size:3
Alignment explanation
Indices: 22411471--22411510 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
22411461 TTTAATTTCA
* *
22411471 TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAC TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
22411511 TGCTCATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:22416293 original size:27 final size:27
Alignment explanation
Indices: 22416262--22416327 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
22416252 CTCAATAAAA
22416262 TTTCATCTTATCCATTGTGATAATCTT
1 TTTCATCTTATCCATTGTGATAATCTT
22416289 TTTCATCTTATCCATTGTGATAATCTT
1 TTTCATCTTATCCATTGTGATAATCTT
*
22416316 TTTCATATTATC
1 TTTCATCTTATC
22416328 TTAGCAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (27 bp):
TTTCATCTTATCCATTGTGATAATCTT
Found at i:22416919 original size:24 final size:24
Alignment explanation
Indices: 22416887--22416944 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
22416877 ATATCCCAAA
*
22416887 ATTATAGTGGATTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
*
22416911 ATTACAGTGGATTGAACTTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
22416935 ATTACAGTGG
1 ATTACAGTGG
22416945 GGGCAATCTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTGAAG
Found at i:22417692 original size:50 final size:50
Alignment explanation
Indices: 22417236--22417703 Score: 355
Period size: 50 Copynumber: 9.4 Consensus size: 50
22417226 GTTGCAGTTA
* * *
22417236 AAAAGATTGAAGCCACAACGGCAAATCTTACTT-CCTGGCGATGCATTGG
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* ** * * * **
22417285 AACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* * * *
22417335 AAAAGATTGAAACTACAACGGCAAATCTTACTTCCCTAGCGATGCAGTGG
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* * * * * * **
22417385 AACAGATTGAAGCTACAATGGCAAATCTTGCTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* * * * * *
22417435 AAAAGGA-TGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTGCAGTGG
1 AAAA-GATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* ** * * * * **
22417485 AACAGATTGAAAATACAACGGCAAATCTTGCTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* ** ** * * *
22417535 AAAATATTGAAGCCCCAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
** * * * * * **
22417585 AGCAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
* * * * * *
22417635 AAAAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGTGGTGTAGTGG
1 AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
*
22417685 AATAGATTGAAGCTACAAC
1 AAAAGATTGAAGCTACAAC
22417704 AGCGAATTTT
Statistics
Matches: 303, Mismatches: 113, Indels: 5
0.72 0.27 0.01
Matches are distributed among these distances:
49 30 0.10
50 271 0.89
51 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (50 bp):
AAAAGATTGAAGCTACAACGGCAAATCTTACTTCCCTGGCGTTGCAATGG
Found at i:22417764 original size:100 final size:100
Alignment explanation
Indices: 22417227--22417746 Score: 711
Period size: 100 Copynumber: 5.2 Consensus size: 100
22417217 ACCCCTGAGG
* * *
22417227 TTGCAGTTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT-CCTGGCGATGCATTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* ** *
22417291 TTGAAGCTACAACGGTGAATCTTATTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
22417326 TTGCAATTAAAAAGATTGAAACTACAACGGCAAATCTTACTTCCCTAGCGATGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
22417391 TTGAAGCTACAATGGCAAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *
22417426 TTGCAATTAAAAAGGA-TGAAGCCACAACAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAACAG
1 TTGCAATTAAAAA-GATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
** *
22417490 ATTGAAAATACAACGGCAAATCTTGCTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * ** * *
22417526 TTGCAATTAAAAATATTGAAGCCCCAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAGCAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
22417591 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
22417626 TTGCAATTAAAAAGATTGAAGCCACAACGGTAAATCTTACTTCCCTGGTGGTGTAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
22417691 TTGAAGCTACAACAGCGAATTTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* **
22417726 TTGCAGTTAAATGGATTGAAG
1 TTGCAATTAAAAAGATTGAAG
22417747 TCATCATGGC
Statistics
Matches: 376, Mismatches: 42, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
99 40 0.11
100 334 0.89
101 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:22418007 original size:44 final size:44
Alignment explanation
Indices: 22417758--22418143 Score: 160
Period size: 44 Copynumber: 8.8 Consensus size: 44
22417748 CATCATGGCG
* * * * *** *
22417758 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
* * * * * *
22417802 AATCTTATC-CCTCTAAAGTTGCAGTGGGGCAGATTGAAGATAACA
1 AATCCTATCTCC-CTGAAGTTGCAGTGGAGCAGATAGAA-AAAACC
* * * * * * *
22417847 AATCTTATTTCCTTGAAGTTGTAGTGGAACAGATTGAAGCTAAATAAC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAA---AAA-ACC
* * * * * * *
22417895 AGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTG---CATCC
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
* * *
22417937 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
* * * *
22417981 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT--TAAAACCAC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAAC-C
* *** * * * * *
22418024 AGATCTTATCTTTTTGAAGTTGCAATAGAGCAGATCG---CATCC
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
* ** * * *
22418066 AGTTTTATCTCCCTGAAGTTGCAGTGGAGTAGACAGAAGAAACC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
* *
22418110 AATCCTATCTCCCTGAAGTTGCACTGGAACAGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
22418144 TGAAGCTAAA
Statistics
Matches: 255, Mismatches: 70, Indels: 34
0.71 0.19 0.09
Matches are distributed among these distances:
41 54 0.21
42 9 0.04
43 7 0.03
44 118 0.46
45 31 0.12
46 2 0.01
47 2 0.01
48 2 0.01
49 30 0.12
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACC
Found at i:22418188 original size:129 final size:131
Alignment explanation
Indices: 22417804--22418167 Score: 425
Period size: 129 Copynumber: 2.8 Consensus size: 131
22417794 AAGCCACTAA
* * * * * * *
22417804 TCTTATC-CCTCTAAAGTTGCAGTGGGGCAGATTGAAGATAACAAATCTTATTTCCTTGAAGTTG
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGATAGAAGA-AACCAATCCTATCTCCCTGAAGTTG
* *
22417868 TAGTGGAACAGATTGAAGCTAAATAACAGATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATTGC
64 TAGTGGAACAGATTGAAGCTAAATAACAGATCTTATTT-T-TGAAGTTGCAATAGA-CAGATCGC
22417933 ATCCAG
126 ATCCAG
* *
22417939 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATAGAAAAAACCAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGTA
* * **
22418004 GTGGAGCGGATT--A---AAACCACAGATCTTATCTTTTTGAAGTTGCAATAGAGCAGATCGCAT
66 GTGGAACAGATTGAAGCTAAATAACAGATCTTA--TTTTTGAAGTTGCAATAGA-CAGATCGCAT
22418064 CCAG
128 CCAG
* * * *
22418068 TTTTATCTCCCTGAAGTTGCAGTGGAGTAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGTA
* *
22418133 CTGGAACAGATTGAAGCTAAATAATAGATCTTATT
66 GTGGAACAGATTGAAGCTAAATAACAGATCTTATT
22418168 GTTAGAGTAT
Statistics
Matches: 194, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
129 109 0.56
130 1 0.01
131 4 0.02
132 3 0.02
134 45 0.23
135 31 0.16
136 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (131 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGTA
GTGGAACAGATTGAAGCTAAATAACAGATCTTATTTTTGAAGTTGCAATAGACAGATCGCATCCA
G
Found at i:22419901 original size:129 final size:128
Alignment explanation
Indices: 22419656--22419904 Score: 347
Period size: 129 Copynumber: 1.9 Consensus size: 128
22419646 GATCCAACAC
* * * * *
22419656 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAACAGTAGTGGAG
1 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCCGAAACAGCAGTGGAG
*
22419721 CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAAATG
66 CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAAACCACAAATG
* ***
22419784 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAGCCTTATCTCCCGGAAGTTGCAGTGGA
1 TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCC-GAAACAGCAGTGGA
* ** *
22419849 GCAGACTGAAGCTA-CTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAAC
65 GCAGACAGAAGAAATC-AATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAAAC
22419905 GATGAATCCT
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
128 47 0.45
129 58 0.55
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (128 bp):
TTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCAAGCCTTATCTCCCGAAACAGCAGTGGAG
CAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGAATTAAAACCACAAATG
Found at i:22419913 original size:44 final size:44
Alignment explanation
Indices: 22419826--22419916 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
22419816 CATCCAGCCT
* * *
22419826 TATCTCCCGGAAGTTGCAGTGGAGCAGACTGAAGCTACTAATCC
1 TATCTCCCGGAAGTTGCAGTGGAGCAGACTAAAACGACTAATCC
* *
22419870 TATCTCCCTGAAGTTGCAGTGGAGC-GAATTAAAACGA-TGAATCC
1 TATCTCCCGGAAGTTGCAGTGGAGCAG-ACTAAAACGACT-AATCC
22419914 TAT
1 TAT
22419917 ACCTTTGAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (44 bp):
TATCTCCCGGAAGTTGCAGTGGAGCAGACTAAAACGACTAATCC
Found at i:22421698 original size:3 final size:3
Alignment explanation
Indices: 22421690--22421723 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
22421680 TTTAATTTCG
*
22421690 TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
22421724 TGCTCATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:22429081 original size:47 final size:47
Alignment explanation
Indices: 22428985--22429081 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
22428975 TTGAAACATT
* * *
22428985 TTGATATATTTTGGTAGTATTTGATGATGGTTTATAGTGTTTTTGAA
1 TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTGTTATTAAA
22429032 TTGATACATTTTGGTAGTATTTGATGATGGTTTAT-GTGCTTATTAAA
1 TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTG-TTATTAAA
22429079 TTG
1 TTG
22429082 CTAACTTATG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 3 0.07
47 43 0.93
ACGTcount: A:0.24, C:0.02, G:0.23, T:0.52
Consensus pattern (47 bp):
TTGATACATTTTGGTAGTATTTGATGATGGTTTATAGTGTTATTAAA
Found at i:22430496 original size:13 final size:13
Alignment explanation
Indices: 22430478--22430502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22430468 AAAATTCATC
22430478 AAAATTAATTATA
1 AAAATTAATTATA
22430491 AAAATTAATTAT
1 AAAATTAATTAT
22430503 GTACACTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTAATTATA
Found at i:22431780 original size:20 final size:18
Alignment explanation
Indices: 22431733--22431839 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
22431723 CAAGATAAAC
22431733 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
*
22431750 ATTAAGA-TAATCACTTTAGT
1 ATTAA-ATTAAT-A-TTTAAT
**
22431770 ATTAAATTAATAAAATAAT
1 ATTAAATTAAT-ATTTAAT
22431789 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
*
22431806 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
22431826 ATTAAAATAATATT
1 ATTAAATTAATATT
22431840 ATTTTTCAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.01
17 15 0.21
18 10 0.14
19 21 0.30
20 23 0.33
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:22442155 original size:27 final size:27
Alignment explanation
Indices: 22442124--22442176 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
22442114 TTTCGAGTCG
**
22442124 TCTAGGATGAGTGCTTCGACCGAGTAT
1 TCTAGGATGAGCACTTCGACCGAGTAT
*
22442151 TCTAGGATGAGCACTTCGACTGAGTA
1 TCTAGGATGAGCACTTCGACCGAGTA
22442177 GTCTTCTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
TCTAGGATGAGCACTTCGACCGAGTAT
Found at i:22442475 original size:12 final size:12
Alignment explanation
Indices: 22442458--22442508 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
22442448 ACTTAATCAC
22442458 TTTAATATTAAA
1 TTTAATATTAAA
*
22442470 TTTAAT-CTAATA
1 TTTAATATTAA-A
*
22442482 TATATTATATTAAA
1 T-T-TAATATTAAA
22442496 TTTAATATTAAA
1 TTTAATATTAAA
22442508 T
1 T
22442509 CTTATTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
11 3 0.10
12 18 0.58
13 2 0.06
14 5 0.16
15 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:22442486 original size:21 final size:21
Alignment explanation
Indices: 22442462--22442503 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22442452 AATCACTTTA
*
22442462 ATATTAAATTTAATCTAATAT
1 ATATTAAATTAAATCTAATAT
* *
22442483 ATATTATATTAAATTTAATAT
1 ATATTAAATTAAATCTAATAT
22442504 TAAATCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATTAAATTAAATCTAATAT
Found at i:22446794 original size:13 final size:13
Alignment explanation
Indices: 22446776--22446801 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22446766 CTAGATTAAA
22446776 TAATTAATTCAAT
1 TAATTAATTCAAT
22446789 TAATTAATTCAAT
1 TAATTAATTCAAT
22446802 AACTTACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTAATTCAAT
Found at i:22452494 original size:28 final size:29
Alignment explanation
Indices: 22452367--22452562 Score: 195
Period size: 29 Copynumber: 6.9 Consensus size: 29
22452357 CCACAAGGCA
* * *
22452367 TTTAACTGAGATAGCCATAAAGGCATCCT
1 TTTAACAGAGATAGCCACAAAGGCTTCCT
*
22452396 TTTAACCGAGATAGCCACAAAGG-TATCCT
1 TTTAACAGAGATAGCCACAAAGGCT-TCCT
* *
22452425 TTTAACTAG-TATAGCCACAAAGGCATCCT
1 TTTAAC-AGAGATAGCCACAAAGGCTTCCT
* * *
22452454 TTTAACTGAGATTGCCACAAAGGCTTAC-
1 TTTAACAGAGATAGCCACAAAGGCTTCCT
** * *
22452482 TTTAACAGAGATTTCCATAAAGGCTT-CG
1 TTTAACAGAGATAGCCACAAAGGCTTCCT
* * *
22452510 TTTAATAGAGATCGCCACAAAGGTTTCC-
1 TTTAACAGAGATAGCCACAAAGGCTTCCT
22452538 TTTAACAGAGATAGCCACAAAGGCT
1 TTTAACAGAGATAGCCACAAAGGCT
22452563 CACTTATACA
Statistics
Matches: 139, Mismatches: 22, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
27 1 0.01
28 67 0.48
29 70 0.50
30 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (29 bp):
TTTAACAGAGATAGCCACAAAGGCTTCCT
Found at i:22456842 original size:284 final size:284
Alignment explanation
Indices: 22456332--22457465 Score: 2223
Period size: 284 Copynumber: 4.0 Consensus size: 284
22456322 ACTTCAATAC
22456332 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
*
22456397 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCGGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22456462 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
*
22456527 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTACC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22456592 TTGTGTAAAATTCTCGAATTGGCG
261 TTGTGTAAAATTCTCGAATTGGCG
22456616 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
22456681 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22456746 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
22456811 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
*
22456876 TTGTGTAAAATTCTCGAATTGGTG
261 TTGTGTAAAATTCTCGAATTGGCG
22456900 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
22456965 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22457030 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
22457095 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22457160 TTGTGTAAAATTCTCGAATTGGCG
261 TTGTGTAAAATTCTCGAATTGGCG
*
22457184 CTTTCCGATGAAAGGCGCTTTCATATGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
1 CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
22457249 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
66 TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
22457314 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
131 TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
*
22457379 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTTCC
196 TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
22457444 TTGTGTAAAATTCTCGAATTGG
261 TTGTGTAAAATTCTCGAATTGG
22457466 TGCAAATATG
Statistics
Matches: 844, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
284 844 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (284 bp):
CTTTCCGATGAAAGGCGCTTTCATACGATCAACATAGGCAAGGTTGAAGATGAAATCACACTACA
TGAGCCCGAAGGTAAGCGAGGTAAGGAAATTTTAGCCACTGAGTCCCGTGCAGATTTGAAAATTA
TTGATAAAACTTTAGGTGACTTAGTTCTTAAAAGATCCCTTCATTTTGTTCTGGTTAATTGTTAC
TCTTCAATTGTGGTTGATAAAGTCATTACGAAAGGAAGCATGAGCTGTTATTCTCTTAATTTGCC
TTGTGTAAAATTCTCGAATTGGCG
Found at i:22457930 original size:9 final size:9
Alignment explanation
Indices: 22457916--22457941 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22457906 TGTGAAACTC
22457916 TGTGAATCG
1 TGTGAATCG
22457925 TGTGAATCG
1 TGTGAATCG
22457934 TGTGAATC
1 TGTGAATC
22457942 TTTTCAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.35
Consensus pattern (9 bp):
TGTGAATCG
Found at i:22461079 original size:19 final size:19
Alignment explanation
Indices: 22461037--22461073 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22461027 AGTGAGAGAT
*
22461037 ATTTGTAACTGTAAGGAGC
1 ATTTCTAACTGTAAGGAGC
*
22461056 ATTTCTAACTGTGAGGAG
1 ATTTCTAACTGTAAGGAG
22461074 TTTTTCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (19 bp):
ATTTCTAACTGTAAGGAGC
Found at i:22470254 original size:25 final size:25
Alignment explanation
Indices: 22470216--22470268 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
22470206 TTTGTGAAGC
*
22470216 CTTTGTGGAGAACT-CTCTGTAAATT
1 CTTTGTGGAGAACTCCT-TGTAAAAT
22470241 CTTTGTGGCA-AACTCCTTGTAAAAT
1 CTTTGTGG-AGAACTCCTTGTAAAAT
22470266 CTT
1 CTT
22470269 CTTGGCATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (25 bp):
CTTTGTGGAGAACTCCTTGTAAAAT
Found at i:22479383 original size:6 final size:6
Alignment explanation
Indices: 22479330--22479380 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
22479320 TCATCCCCAA
* * *
22479330 AAATCA AAATCA AAATCC AAATCC AAATCC AAATCC AAATCC AAACCC
1 AAATCC AAATCC AAATCC AAATCC AAATCC AAATCC AAATCC AAATCC
22479378 AAA
1 AAA
22479381 CCCTAATCCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14
Consensus pattern (6 bp):
AAATCC
Found at i:22479388 original size:18 final size:18
Alignment explanation
Indices: 22479346--22479389 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22479336 AAATCAAAAT
* *
22479346 CCAAATCCAAATCCAAAT
1 CCAAATCCAAACCCAAAC
22479364 CCAAATCCAAACCCAAAC
1 CCAAATCCAAACCCAAAC
*
22479382 CCTAATCC
1 CCAAATCC
22479390 CACCTCCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (18 bp):
CCAAATCCAAACCCAAAC
Found at i:22483411 original size:36 final size:30
Alignment explanation
Indices: 22483337--22483423 Score: 165
Period size: 30 Copynumber: 2.9 Consensus size: 30
22483327 TGAGCAGGAA
22483337 TGATAAAGGGAAAGGGAAAATGGTTGATGC
1 TGATAAAGGGAAAGGGAAAATGGTTGATGC
22483367 TGATAAAGGGAAAGGGAAAATGGTTGATGC
1 TGATAAAGGGAAAGGGAAAATGGTTGATGC
*
22483397 TGATAAAGGGAAAGGGAAACTGGTTGA
1 TGATAAAGGGAAAGGGAAAATGGTTGA
22483424 CATCATACCG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.40, C:0.03, G:0.37, T:0.20
Consensus pattern (30 bp):
TGATAAAGGGAAAGGGAAAATGGTTGATGC
Found at i:22488171 original size:30 final size:30
Alignment explanation
Indices: 22488135--22488193 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
22488125 GATACATAGC
22488135 TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
1 TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
22488165 TTGTCACTTAAGCTCGAGTGAGGAGCTTT
1 TTGTCACTTAAGCTCGAGTGAGGAGCTTT
22488194 GCTGATACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (30 bp):
TTGTCACTTAAGCTCGAGTGAGGAGCTTTA
Found at i:22488241 original size:42 final size:42
Alignment explanation
Indices: 22488168--22488325 Score: 203
Period size: 42 Copynumber: 3.8 Consensus size: 42
22488158 AGCTTTATTG
*
22488168 TCACTTAAGCTCGA-GT-GAGGAGCTTTGCTGATACACAACTTA
1 TCACTTAAGCTC-ATGTAG-GGAGCTTCGCTGATACACAACTTA
* * * **
22488210 TCGCTTAAGCTCACGTAGGGAGTTTTTCTGATACACAACTTA
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
* *
22488252 TCACTTAAGCTCATGTGGGGAGCTTCGCTAATACACAACTTA
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
*
22488294 TCACTTAAGCTCATGTAGGGAGCTTCTCTGAT
1 TCACTTAAGCTCATGTAGGGAGCTTCGCTGAT
22488326 CCATAGCTTG
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 99 0.98
43 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
TCACTTAAGCTCATGTAGGGAGCTTCGCTGATACACAACTTA
Found at i:22488312 original size:84 final size:84
Alignment explanation
Indices: 22488168--22488325 Score: 237
Period size: 84 Copynumber: 1.9 Consensus size: 84
22488158 AGCTTTATTG
* * * *
22488168 TCACTTAAGCTCGAGTGAGGAGCTTTGCTGATACACAACTTATCGCTTAAGCTCACGTAGGGAGT
1 TCACTTAAGCTCGAGTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAGC
*
22488233 TTTTCTGATACACAACTTA
66 TTCTCTGATACACAACTTA
* *
22488252 TCACTTAAGCTC-ATGTGGGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCATGTAGGGAG
1 TCACTTAAGCTCGA-GTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAG
22488316 CTTCTCTGAT
65 CTTCTCTGAT
22488326 CCATAGCTTG
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
83 1 0.02
84 65 0.98
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (84 bp):
TCACTTAAGCTCGAGTGAGGAGCTTCGCTAATACACAACTTATCACTTAAGCTCACGTAGGGAGC
TTCTCTGATACACAACTTA
Found at i:22498997 original size:21 final size:20
Alignment explanation
Indices: 22498964--22499002 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22498954 GTTTTCTCAT
*
22498964 TCAATTGTATTTACAAGTTAG
1 TCAATTATATTTA-AAGTTAG
*
22498985 TCAATTATGTTTAAAGTT
1 TCAATTATATTTAAAGTT
22499003 GAGAACATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (20 bp):
TCAATTATATTTAAAGTTAG
Found at i:22499230 original size:8 final size:8
Alignment explanation
Indices: 22499217--22499250 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
22499207 TGAAACTAAA
22499217 AGAGGGAG
1 AGAGGGAG
22499225 AGAGGGAG
1 AGAGGGAG
22499233 AGAGGGAG
1 AGAGGGAG
22499241 AGAGAGGAG
1 AGAG-GGAG
22499250 A
1 A
22499251 TAACTATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.80
9 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (8 bp):
AGAGGGAG
Found at i:22501490 original size:24 final size:25
Alignment explanation
Indices: 22501457--22501510 Score: 101
Period size: 24 Copynumber: 2.2 Consensus size: 25
22501447 TTACTTGATG
22501457 TATTCTTTTATATAATATTTAAAAT
1 TATTCTTTTATATAATATTTAAAAT
22501482 TATT-TTTTATATAATATTTAAAAT
1 TATTCTTTTATATAATATTTAAAAT
22501506 TATTC
1 TATTC
22501511 ATAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTCTTTTATATAATATTTAAAAT
Found at i:22501517 original size:24 final size:24
Alignment explanation
Indices: 22501466--22501517 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
22501456 GTATTCTTTT
** *
22501466 ATATAATATTTAAAATTATTTTTT
1 ATATAATATTTAAAATTATTCATA
22501490 ATATAATATTTAAAATTATTCATA
1 ATATAATATTTAAAATTATTCATA
22501514 ATAT
1 ATAT
22501518 TAAGATAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATAATATTTAAAATTATTCATA
Found at i:22504154 original size:41 final size:41
Alignment explanation
Indices: 22504069--22504154 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
22504059 GGAGCAGTGT
* * *
22504069 TAGCGGGGTTTTTCCCATAAACGCCGCAAAAGGTAAAGTAA
1 TAGCGGAGTTTTTCCCATAAACACCGCAAAAGGTAAAATAA
* * *
22504110 TAGCGGAGTTTTT-GCATAAACATCGCAAAAGGTTAAAATTA
1 TAGCGGAGTTTTTCCCATAAACACCGCAAAAGG-TAAAATAA
22504151 TAGC
1 TAGC
22504155 ACCATTTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 16 0.42
41 22 0.58
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (41 bp):
TAGCGGAGTTTTTCCCATAAACACCGCAAAAGGTAAAATAA
Found at i:22513349 original size:43 final size:43
Alignment explanation
Indices: 22513259--22513350 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 43
22513249 TTTTGCGGCG
* * ***
22513259 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTTTAGTGGTG
1 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
* ** *
22513302 TTTGTAATAAAAGTGTCGCTAAAGATCATGTTCTATAGCGACA
1 TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
22513345 TTTGTA
1 TTTGTA
22513351 GGGAAAGTGC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (43 bp):
TTTGTAAAAAAAACGTCGCTAAAAATCATGTTCTATAGCGACA
Found at i:22513790 original size:21 final size:21
Alignment explanation
Indices: 22513750--22513791 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
22513740 AAAAGTTAGA
22513750 AAAATGAATTATATTCTTTCC
1 AAAATGAATTATATTCTTTCC
22513771 AAAA-GAATATATGATT-TTTCC
1 AAAATGAAT-TAT-ATTCTTTCC
22513792 CATATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAATGAATTATATTCTTTCC
Found at i:22513836 original size:75 final size:75
Alignment explanation
Indices: 22513713--22513880 Score: 264
Period size: 75 Copynumber: 2.2 Consensus size: 75
22513703 ACTATAATTA
* * * *
22513713 TTCCCTTATTAATAGAGAAGACAAGTGAAAAGTTAGAAAAATGAATTATATTCTTTCCAAAAGAA
1 TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
*
22513778 TATATGATTT
66 TATAAGATTT
* *
22513788 TTCCCATATTAATAGAAAAGAAAAATGGAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
1 TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
22513853 TATAAGATTT
66 TATAAGATTT
*
22513863 TTCCCTTATTAATGGAAA
1 TTCCCTTATTAATAGAAA
22513881 GTTAGAAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 84 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (75 bp):
TTCCCTTATTAATAGAAAAGAAAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCCAAAAGAA
TATAAGATTT
Found at i:22519629 original size:25 final size:25
Alignment explanation
Indices: 22519569--22519658 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
22519559 GTACATGTAT
* *
22519569 GCTCATAAGAGCTGTA-AACGGTAA
1 GCTCATAAGAGCTGAATAATGGTAA
* **
22519593 GCTCCTCCGAGCTGAATAATGGTAA
1 GCTCATAAGAGCTGAATAATGGTAA
* *
22519618 GCTCATATGAGCTGAGT-ATCGGTAA
1 GCTCATAAGAGCTGAATAAT-GGTAA
22519643 GCTCATAAGAGCTGAA
1 GCTCATAAGAGCTGAA
22519659 ATCGATAACC
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
24 14 0.26
25 39 0.74
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (25 bp):
GCTCATAAGAGCTGAATAATGGTAA
Found at i:22528050 original size:48 final size:48
Alignment explanation
Indices: 22527954--22528187 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
22527944 GATTTCTCGA
* * * * * * * *
22527954 TGGCCGACACACAGTCTGTACCACCTTTGTGTAAGAACA-AATTTTTGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAA-TATTGG
* * * * *
22528002 TGGCCTGCACATATTCCGTGCCACCCTTGTATCTTAACAGATTATTGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
* * * *
22528050 TGGCCTACACATAGTCTGTGCCACCCTTGTATCATAATAGAATATCGG
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
* *
22528098 TGGCCTACACACAGCCCATGCCACCCTTGTATCATAACAGAATATCT-G
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATAT-TGG
* * * *
22528146 TGGCCTGCACACAGTCTGTGCCACTCTTGTGTCATAACAGAA
1 TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAA
22528188 CATCGGTACG
Statistics
Matches: 152, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
48 151 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
TGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATATTGG
Found at i:22561815 original size:69 final size:68
Alignment explanation
Indices: 22561680--22561815 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 68
22561670 TAGATTAGAT
* * * * *
22561680 TTAATATTAAATTCAATTTGATACTTATATTGATAGTATTTTATTAATTTAATATTACAGTCATT
1 TTAATATTAAATTCAATTTAATACTTATATAGATAGTATTATATTAATTTAATACTAAAGTCATT
22561745 ATC
66 ATC
* * * * *
22561748 TTAATATTAAATTGAATTTAATATTTATCTAGATAAGTATTATATTAATTTAATGCTAAAGTGAT
1 TTAATATTAAATTCAATTTAATACTTATATAGAT-AGTATTATATTAATTTAATACTAAAGTCAT
22561813 TAT
65 TAT
22561816 GTTTAATCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 29 0.51
69 28 0.49
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (68 bp):
TTAATATTAAATTCAATTTAATACTTATATAGATAGTATTATATTAATTTAATACTAAAGTCATT
ATC
Found at i:22568122 original size:10 final size:10
Alignment explanation
Indices: 22568107--22568155 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
22568097 AGTAACATTT
22568107 TTAATTTTAA
1 TTAATTTTAA
22568117 TTAATTTTATAA
1 TTAA-TTT-TAA
*
22568129 TTAATTTTGA
1 TTAATTTTAA
*
22568139 TTAATTTTGA
1 TTAATTTTAA
22568149 TT-ATTTT
1 TTAATTTT
22568156 CGACATTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 5 0.14
10 18 0.50
11 6 0.17
12 7 0.19
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:22575725 original size:113 final size:114
Alignment explanation
Indices: 22575526--22575825 Score: 444
Period size: 113 Copynumber: 2.6 Consensus size: 114
22575516 ATTAGAAAAT
* *
22575526 GCCGCAAAAAACCTAAGCCCAGCGACATCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTT
1 GCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTT
* *
22575591 GGAGAAGCACCGCTAATTCTCAGGGTTTTAGC-GACGTTTTTGAAAAAGC
66 GGAGAAGCACCGCTAATTCTCAAGGTTTTAGCAG-CATTTTTGAAAAAGC
* * *
22575640 GCCGCAAAAGACCTAAGCCCAACGATGTCG-TTTTCTTAGTTTTCGAGGCTTTGGTGGCATTTTT
1 GCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGC-GTTTT
* *
22575704 TGGA-AAGCGCCGCTAATTCTCAAGGTTTTAGCAGCATTTTTTAAAAAGC
65 TGGAGAAGCACCGCTAATTCTCAAGGTTTTAGCAGCATTTTTGAAAAAGC
* ** *
22575753 ACCATAAAAAAACTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTT
1 GCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTT
22575818 GGAGAAGC
66 GGAGAAGC
22575826 CCATTATAAT
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
113 99 0.60
114 67 0.40
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (114 bp):
GCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTTCTTAGTTTTCGAGGCTTTGGTGGCGTTTTT
GGAGAAGCACCGCTAATTCTCAAGGTTTTAGCAGCATTTTTGAAAAAGC
Found at i:22579480 original size:12 final size:13
Alignment explanation
Indices: 22579462--22579492 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
22579452 ATGTTGAATT
22579462 TTAATTAATTTTA
1 TTAATTAATTTTA
22579475 -TAATTAATTTTA
1 TTAATTAATTTTA
22579487 TTAATT
1 TTAATT
22579493 TTGATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTAATTTTA
Found at i:22579491 original size:9 final size:10
Alignment explanation
Indices: 22579458--22579503 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 10
22579448 TAACATGTTG
22579458 AATTTTAATT
1 AATTTTAATT
22579468 AATTTTATAATT
1 AA-TTT-TAATT
22579480 AATTTT-ATT
1 AATTTTAATT
*
22579489 AATTTTGATT
1 AATTTTAATT
22579499 -ATTTT
1 AATTTT
22579504 CGACAAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
9 14 0.42
10 6 0.18
11 6 0.18
12 7 0.21
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
AATTTTAATT
Found at i:22581267 original size:50 final size:50
Alignment explanation
Indices: 22581143--22581391 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
22581133 GATAATAACA
* * ** * *
22581143 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
22581194 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
22581244 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
22581294 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
22581349 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
22581392 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:22581321 original size:100 final size:104
Alignment explanation
Indices: 22581142--22581391 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
22581132 TGATAATAAC
**
22581142 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
22581207 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
22581244 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
22581307 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
22581349 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22581392 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:22581507 original size:13 final size:13
Alignment explanation
Indices: 22581486--22581517 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
22581476 GCTTGGATCA
*
22581486 TCATCAAATAAAT
1 TCATAAAATAAAT
22581499 TCATAAAATAAAT
1 TCATAAAATAAAT
22581512 TCATAA
1 TCATAA
22581518 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:22581764 original size:30 final size:30
Alignment explanation
Indices: 22581729--22581786 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
22581719 CCTCGACTCT
*
22581729 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
22581759 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
22581787 AAGGCTCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:22592497 original size:72 final size:72
Alignment explanation
Indices: 22592409--22592559 Score: 266
Period size: 72 Copynumber: 2.1 Consensus size: 72
22592399 TCAACACCAA
* * *
22592409 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAGCCACTTAAACTGAAATTAC
1 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
22592474 TAGTTTG
66 TAGTTTG
22592481 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
1 ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
*
22592546 TGGTTTG
66 TAGTTTG
22592553 ATCATCT
1 ATCATCT
22592560 TCATGCTCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (72 bp):
ATCATCTATTACACATAGTCTATTTCGAAAGTATAAACTCTCATAACCACTTAAACTAAAATCAC
TAGTTTG
Found at i:22597073 original size:45 final size:45
Alignment explanation
Indices: 22597018--22597108 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
22597008 TCACAATGCT
*
22597018 TTTATTCTTTCACTATTTTTCATTTAGGAATTTTAATTGCAACAA
1 TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
*
22597063 TTTATTCTTTCACTACTTTTCATTTAGGCATTTTAATTGCAACAA
1 TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
22597108 T
1 T
22597109 CCTATACTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.51
Consensus pattern (45 bp):
TTTATTCTTTCACTACTTTTCATTTAGGAATTTTAATTGCAACAA
Found at i:22598923 original size:24 final size:24
Alignment explanation
Indices: 22598896--22598941 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
22598886 TTTACTACAA
* *
22598896 TATTGAGTGGCTTGGCCATAACAT
1 TATTGAGTGGCATGACCATAACAT
22598920 TATTGAGTGGCATGACCATAAC
1 TATTGAGTGGCATGACCATAAC
22598942 GTGCAGTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (24 bp):
TATTGAGTGGCATGACCATAACAT
Found at i:22600177 original size:25 final size:25
Alignment explanation
Indices: 22600145--22600210 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
22600135 ATACATATAC
22600145 ATATAAATTATATAAAA-AATTACAT
1 ATATAAA-TATATAAAATAATTACAT
22600170 ATATAAATAT-TAATAATAATTACATT
1 ATATAAATATATAA-AATAATTACA-T
*
22600196 ATAGAAATATATAAA
1 ATATAAATATATAAA
22600211 TTATGAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 3 0.08
24 5 0.14
25 14 0.39
26 11 0.31
27 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATAAATATATAAAATAATTACAT
Found at i:22600227 original size:15 final size:17
Alignment explanation
Indices: 22600184--22600228 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
22600174 AAATATTAAT
22600184 AATA-ATTACATTATAGA
1 AATATATTA-ATTATAGA
*
22600201 AATATATAAATTAT-GA
1 AATATATTAATTATAGA
22600217 AA-ATATTAATTA
1 AATATATTAATTA
22600229 CATATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 9 0.36
16 4 0.16
17 9 0.36
18 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (17 bp):
AATATATTAATTATAGA
Found at i:22602062 original size:89 final size:89
Alignment explanation
Indices: 22601969--22602880 Score: 575
Period size: 89 Copynumber: 10.4 Consensus size: 89
22601959 TGCTATTTTT
* * * * * *
22601969 GATCTACTTCACTGCCAGTACGGGAAGGTAAGATCTGTTATCCTT-GATCTACTTCA-TGCCAAT
1 GATCTACTTCAC-GCCAGTACAGGAAGATAAGATCTGCTAT-CTTCAATCCACTTCACTACCAAT
* *
22602032 -TCATGAAGACAAGATCTATTTTCTTC
64 AT-AGGAAGACAAGATCTACTTTCTTC
* *
22602058 GATCTACTTCACCACCAGTATAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATA
1 GATCTACTTCA-CGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATA
* * *
22602123 TAGGAAGACAGGATTTGCTTTCTTC
65 TAGGAAGACAAGATCTACTTTCTTC
* * * *
22602148 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCACTTCGCTACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATAT
* * *
22602213 AGGAAGACAGGATTTGCTTTCTTC
66 AGGAAGACAAGATCTACTTTCTTC
* * * ** * ** * *
22602237 GATCTATTTCACACCAATACATAAAGACAAGATCTGC-ATCTTTGATCCATTTCGCTACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATAT
* * * *
22602301 AGGAAGACAGGATTTGCTATCTTC
66 AGGAAGACAAGATCTACTTTCTTC
* * * * * ** * * *
22602325 GATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATAT
*
22602390 GGGAAGACAAG----A---TCTTC
66 AGGAAGACAAGATCTACTTTCTTC
* * * * * * * * * *
22602407 GATCCACTTC-CTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTAAC-ACCAATA
1 GATCTACTTCAC-GCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATA
* * *
22602470 CATGAAGACAAGATCTGCTTTCTTC
65 TAGGAAGACAAGATCTACTTTCTTC
* ** * * * *
22602495 GATCTTCTTCAC-CAGCAGTATGGGAAGACAAGATCTG-GATCTTCGATCCACTTCGCTACCAAT
1 GATCTACTTCACGC--CAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAAT
* * * *
22602558 ATAGGAAGACAGGATCTGCTATCTTT
64 ATAGGAAGACAAGATCTACTTTCTTC
* * * * ** * * *
22602584 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATAT
*
22602649 GGGAAGACAAG----A---TCTTC
66 AGGAAGACAAGATCTACTTTCTTC
* * * * * * * *
22602666 GATCCACTTC-CTACCAATATAGAAAGATAGGATCTGCTATCTTCGATCTACTTCACGT--CAAT
1 GATCTACTTCAC-GCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCAC-TACCAAT
* * * * *
22602728 ACATGAAGACAATACCTGCTTTCTTC
64 ATAGGAAGACAAGATCTACTTTCTTC
* ** * * *
22602754 GATCTACTTTGC-CACCAGTATGGGAAGACAAGATCTGC-ACCTTCGATCCACTTC-CTACCAAT
1 GATCTAC-TT-CACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAAT
* * * *
22602816 ATAGGAAGACAGGACCTGCTATCTTC
64 ATAGGAAGACAAGATCTACTTTCTTC
* * * *
22602842 GATCTACTTCATGCCAATACATGAAGACAAGATCTGCTA
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTA
22602881 CAACTTAAAG
Statistics
Matches: 673, Mismatches: 116, Indels: 69
0.78 0.14 0.08
Matches are distributed among these distances:
81 31 0.05
82 96 0.14
86 2 0.00
87 24 0.04
88 187 0.28
89 292 0.43
90 40 0.06
91 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (89 bp):
GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATAT
AGGAAGACAAGATCTACTTTCTTC
Found at i:22602157 original size:134 final size:133
Alignment explanation
Indices: 22602014--22602657 Score: 342
Period size: 133 Copynumber: 4.9 Consensus size: 133
22602004 TGTTATCCTT
* * * * * * *
22602014 GATCTACTTCATGCCAATTCATGAAGACAAGATCTATTTTCTTCGATCTACTTCACCACCAGTAT
1 GATCTACTTCACGCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATAT
*
22602079 AGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTACCAATATAGGAAGACAGGATTTGCTTT
66 AGGAAGACAAGATCTGCTATCTTCAATCCACTTCAC-ACCAATATAGGAAGACAGGATTTGCTTT
22602144 CTTC
130 CTTC
* * *
22602148 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCACTTCGCTACCAATAT
1 GATCTACTTCACGCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATAT
* * * * * * * ** * * *
22602213 AGGAAGACAGGATTTGCTTTCTTCGATCTATTTCACACCAATACATAAAGACAAGATCTGC-ATC
66 AGGAAGACAAGATCTGCTATCTTCAATCCACTTCACACCAATATAGGAAGACAGGATTTGCTTTC
*
22602277 TTT
131 TTC
* * * * * * * * * * * * *
22602280 GATCCATTTCGCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTCA-CGCTAATA
1 GATCTACTTCAC-GCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATA
* * * ** * * * *
22602344 CATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACA--A---G--A
65 TAGGAAGACAAGATCTGCTATCTTCAATCCACTTC-ACACCAATATAGGAAGACAGGATTTGCTT
22602402 TCTTC
129 TCTTC
* * * * * * * * * *
22602407 GATCCACTTC-CTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTT-AACACCAATA
1 GATCTACTTCAC-GCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATA
* * * * ** * * * * * **
22602470 CATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCAGCAGTATGGGAAGACAAGATCTG-GA
65 TAGGAAGACAAGATCTGCTATCTTCAATCCACTTCA-CACCAATATAGGAAGACAGGATTTGCTT
22602534 TCTTC
129 TCTTC
* * * * * * * ** * *
22602539 GATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCA-CGCCAATA
1 GATCTACTTCAC-GCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATA
* * * ** * * *
22602603 CATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACA
65 TAGGAAGACAAGATCTGCTATCTTCAATCCACTTC-ACACCAATATAGGAAGACA
22602658 AGATCTTCGA
Statistics
Matches: 431, Mismatches: 66, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
125 1 0.00
126 98 0.23
127 14 0.03
128 2 0.00
131 2 0.00
132 63 0.15
133 166 0.39
134 85 0.20
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (133 bp):
GATCTACTTCACGCCAATACATGAAGACAAGATCTACTATCTTCAATCCACTTCACCACCAATAT
AGGAAGACAAGATCTGCTATCTTCAATCCACTTCACACCAATATAGGAAGACAGGATTTGCTTTC
TTC
Found at i:22602425 original size:37 final size:38
Alignment explanation
Indices: 22602364--22602435 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 38
22602354 AGATCTGCTT
* * *
22602364 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
*
22602402 TCTTCGATCCACTTC-CTACCAATATAGGAAGACA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACA
22602436 GGATTTGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.57
38 13 0.43
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (38 bp):
TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
Found at i:22602451 original size:126 final size:126
Alignment explanation
Indices: 22602053--22602879 Score: 893
Period size: 126 Copynumber: 6.3 Consensus size: 126
22602043 AGATCTATTT
* * * * * * * * * *
22602053 TCTTCGATCTACTTCACCACCAGTATAGGAAGATAAGATCTGCTATCTTCAATCCACTTCACTAC
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * * * * * *
22602118 CAATATAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATC
65 CAATATGGGAAGACA--A---G--ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATC
22602182 TGCTA
122 TGCTA
* * * * * * * * * *
22602187 TCTTCAATCCACTTCGCTACCAATATAGGAAGACAGGATTTGCTTTCTTCGATCTATTTC-ACAC
1 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
**** * *
22602251 CAATACATAAAGACAAGATCTGCATCTTTGATCCATTTCGCTACCAATATAGGAAGACAGGATTT
65 CAATATGGGAAGACAAGATCT---TC---GATCCACTTC-CTACCAATATAGGAAGACAGGATCT
22602316 GCTA
123 GCTA
* *
22602320 TCTTCGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
*
22602385 AATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTA
66 AATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
* * * * *
22602446 TCTTCGATCTACTTAACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCAGC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
*
22602511 AGTATGGGAAGACAAGATCTGGATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTG
66 AATATGGGAAGAC-A-A----GATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTG
22602576 CTA
124 CTA
* *
22602579 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
* *
22602644 AATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGAAAGATAGGATCTGCTA
66 AATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
* * * *
22602705 TCTTCGATCTACTTCACGTCAATACATGAAGACAATACCTGCTTTCTTCGATCTACTTTGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
* *
22602770 AGTATGGGAAGACAAGATCTGCACCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGC
66 AATATGGGAAGACAAGA--T----CTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGC
22602835 TA
125 TA
*
22602837 TCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCT
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
22602880 ACAACTTAAA
Statistics
Matches: 596, Mismatches: 75, Indels: 46
0.83 0.10 0.06
Matches are distributed among these distances:
126 204 0.34
127 27 0.05
128 3 0.01
129 2 0.00
130 2 0.00
131 2 0.00
132 140 0.23
133 169 0.28
134 47 0.08
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (126 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
AATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
Found at i:22602525 original size:259 final size:259
Alignment explanation
Indices: 22602143--22602879 Score: 1077
Period size: 259 Copynumber: 2.8 Consensus size: 259
22602133 GGATTTGCTT
* * * * * * * *
22602143 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCTTCAATCCACTTCGCTAC
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-AC
* * * * * ****
22602207 CAATATAGGAAGACAGGATTTGCTTTCTTCGATCTAT-TTCA-CACCAATACATAAAGACAAGAT
64 CAATACATGAAGACAAGATCTGCTTTCTTCGATCT-TCTTCACCACCAGTATGGGAAGACAAGAT
* * *
22602270 CTGCATCTTTGATCCATTTCGCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTC
128 CTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC
*
22602335 ACGCTAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAA
193 ACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAA
22602400 GA
258 GA
* *
22602402 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTAACACCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCA
*
22602467 ATACATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCAGCAGTATGGGAAGACAAGATCTG
66 ATACATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAGACAAGATCTG
* *
22602532 GATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACG
131 CATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACG
22602597 CCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
196 CCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
* * **
22602661 TCTTCGATCCACTTCCTACCAATATAGAAAGATAGGATCTGCTATCTTCGATCTACTTCACGTCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCA
* * * **
22602726 ATACATGAAGACAATACCTGCTTTCTTCGATCTACTTTGCCACCAGTATGGGAAGACAAGATCTG
66 ATACATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAGACAAGATCTG
* * *
22602791 CACCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCATG
131 CATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACG
22602855 CCAATACATGAAGACAAGATCTGCT
196 CCAATACATGAAGACAAGATCTGCT
22602880 ACAACTTAAA
Statistics
Matches: 432, Mismatches: 43, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
257 1 0.00
258 107 0.25
259 324 0.75
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (259 bp):
TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCA
ATACATGAAGACAAGATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAGACAAGATCTG
CATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACG
CCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
Found at i:22602879 original size:44 final size:44
Alignment explanation
Indices: 22601955--22602880 Score: 650
Period size: 44 Copynumber: 21.2 Consensus size: 44
22601945 GACTAGATAG
* * * * ** **
22601955 GATCTGCTATTTTTGATCTACTTCACTGCCAGTACGGGAAGGTAA
1 GATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAA
* * *
22602000 GATCTGTTATCCTT-GATCTACTTCATGCCAAT-TCATGAAGACAA
1 GATCTGCTAT-CTTCGATCTACTTCATACCAATAT-AGGAAGACAA
** * * * *
22602044 GATCTATTTTCTTCGATCTACTTCACCACCAGTATAGGAAGATAA
1 GATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAA
* * *
22602089 GATCTGCTATCTTCAATCCACTTCACTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAA
* * ** * *
22602134 GATTTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * *
22602178 GATCTGCTATCTTCAATCCACTTCGCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAA
* * * * * **
22602223 GATTTGCTTTCTTCGATCTATTTCACACCAATACATAAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * * *
22602267 GATCTGC-ATCTTTGATCCATTTCGCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAA
* ** * * *
22602311 GATTTGCTATCTTCGATCTACTTCACGCTAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * ** *
22602355 GATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGAC-A
1 GATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAA
* * *
22602399 -A---G--ATCTTCGATCCACTTCCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * * *
22602437 GATTTGCTATCTTCGATCTACTTAACACCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * * * *
22602481 GATCTGCTTTCTTCGATCTTCTTCACCAGCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-TACCAATATAGGAAGACAA
* * * *
22602526 GATCTG-GATCTTCGATCCACTTCGCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAA
* ** * *
22602570 GATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * ** *
22602614 GATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGAC-A
1 GATCTGCTATCTTCGATCTACTTC-ATACCAATATAGGAAGACAA
* * * * *
22602658 -A---G--ATCTTCGATCCACTTCCTACCAATATAGAAAGATAG
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
*** * *
22602696 GATCTGCTATCTTCGATCTACTTCACGTCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * * * *
22602740 TACCTGCTTTCTTCGATCTACTTTGC-CACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTAC-TT-CATACCAATATAGGAAGACAA
* * * *
22602785 GATCTGC-ACCTTCGATCCACTTCCTACCAATATAGGAAGACAG
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
* * * *
22602828 GACCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
22602872 GATCTGCTA
1 GATCTGCTA
22602881 CAACTTAAAG
Statistics
Matches: 674, Mismatches: 176, Indels: 63
0.74 0.19 0.07
Matches are distributed among these distances:
37 30 0.04
38 26 0.04
39 2 0.00
40 2 0.00
42 3 0.00
43 41 0.06
44 352 0.52
45 214 0.32
46 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCATACCAATATAGGAAGACAA
Found at i:22603203 original size:88 final size:88
Alignment explanation
Indices: 22603096--22603306 Score: 235
Period size: 88 Copynumber: 2.4 Consensus size: 88
22603086 ATTTGCTTCG
* * * ** * *
22603096 CTACCGGTACAGGAGGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGCAACCT-AGGGAGGCAA
1 CTACCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGC-ACCTCAGGGAGACAA
* *
22603160 GACCGGTGTCTTTGGTCTACTTCA
65 GACCGGTGTCTTTGATCTACTCCA
* * * **
22603184 CTATCAGTACAAGAAGGCAAGATCTGTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGACAAG
1 CTACCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGCACCTCAGGGAGACAAG
* * *
22603249 GCCGGTGTCTTTGATCTGCTCCG
66 ACCGGTGTCTTTGATCTACTCCA
* *
22603272 CTGCCGGTACAGGAAGGCAAGATCTGCTATTTTCA
1 CTACCAGTACAGGAAGGCAAGATCTGCTATTTTCA
22603307 CTAATCTGTT
Statistics
Matches: 100, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
87 2 0.02
88 98 0.98
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (88 bp):
CTACCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTGCACCTCAGGGAGACAAG
ACCGGTGTCTTTGATCTACTCCA
Found at i:22615197 original size:13 final size:14
Alignment explanation
Indices: 22615178--22615215 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
22615168 CAATTGCATA
22615178 GAAATAATATAAAC
1 GAAATAATATAAAC
22615192 -AAATAA-ATAAAC
1 GAAATAATATAAAC
22615204 GAAACTAATATA
1 GAAA-TAATATA
22615216 CATAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:22615668 original size:24 final size:25
Alignment explanation
Indices: 22615639--22615708 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
22615629 TCTATACATA
*
22615639 TACATATA-AATTATATAAAAAAAT
1 TACATATAGAAATATATAAAAAAAT
* *
22615663 TACATATATAAATAT-TAATAATAAT
1 TACATATAGAAATATATAA-AAAAAT
22615688 TACATTATAGAAATATATAAA
1 TACA-TATAGAAATATATAAA
22615709 TTATGAAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.28
25 14 0.36
26 11 0.28
27 3 0.08
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (25 bp):
TACATATAGAAATATATAAAAAAAT
Found at i:22615675 original size:26 final size:25
Alignment explanation
Indices: 22615642--22615708 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
22615632 ATACATATAC
22615642 ATATAAATTATATAAAAAAATTACAT
1 ATATAAA-TATATAAAAAAATTACAT
*
22615668 ATATAAATAT-TAATAATAATTACATT
1 ATATAAATATATAA-AAAAATTACA-T
*
22615694 ATAGAAATATATAAA
1 ATATAAATATATAAA
22615709 TTATGAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 3 0.08
25 12 0.33
26 18 0.50
27 3 0.08
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (25 bp):
ATATAAATATATAAAAAAATTACAT
Found at i:22618086 original size:173 final size:173
Alignment explanation
Indices: 22617791--22618110 Score: 604
Period size: 173 Copynumber: 1.8 Consensus size: 173
22617781 GCTCAATGTC
* *
22617791 GTGTATTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCGTGCACTAAATCATATATTCCA
1 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
*
22617856 TCAATGCTTCCATGAAACTTATTAGAATTGCCAAATTTTGTAATACCCCGAAAATTACTACAGTA
66 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCGAAAATTACTACAGTA
*
22617921 AGCAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
131 AGAAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
22617964 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
1 GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
22618029 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCGAAAATTACTACAGTA
66 TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCGAAAATTACTACAGTA
22618094 AGAAAGTAAGATAATAT
131 AGAAAGTAAGATAATAT
22618111 TGAGTTATGT
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
173 143 1.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (173 bp):
GTGTACTTCAGCATAATGGGTAGCTATTGGATTGAAATATTCCATGCACTAAATCATATATTCCA
TCAATGCTTCCATGAAACTTATTAGAATTACCAAATTTTGTAATACCCCGAAAATTACTACAGTA
AGAAAGTAAGATAATATCCTTGATGTAGTAAAATAAGGAAATA
Found at i:22618577 original size:19 final size:19
Alignment explanation
Indices: 22618553--22618597 Score: 81
Period size: 19 Copynumber: 2.3 Consensus size: 19
22618543 AATGATTACT
22618553 ATAAAAGGGAGGAAAGATG
1 ATAAAAGGGAGGAAAGATG
22618572 ATAAAAGGGAGGAAAGATG
1 ATAAAAGGGAGGAAAGATG
22618591 ATGAAAA
1 AT-AAAA
22618598 ATCATCATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (19 bp):
ATAAAAGGGAGGAAAGATG
Found at i:22621244 original size:5 final size:5
Alignment explanation
Indices: 22621236--22621262 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
22621226 AATATGAAGA
22621236 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
22621263 GAAAACTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:22624928 original size:5 final size:5
Alignment explanation
Indices: 22624918--22624954 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
22624908 GATTGATGTA
22624918 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
22624955 TAAATACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:22627138 original size:20 final size:20
Alignment explanation
Indices: 22627113--22627152 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22627103 CGTAAAATAA
*
22627113 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22627133 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22627153 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22627142 original size:34 final size:35
Alignment explanation
Indices: 22627098--22627164 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
22627088 CAGTAAAATG
*
22627098 TTTTCCGTAAAATAATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACTGGAAAATATTTTAC
* *
22627132 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTGGAAAATATTTT
22627165 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTGGAAAATATTTTAC
Found at i:22627321 original size:22 final size:24
Alignment explanation
Indices: 22627296--22627346 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
22627286 TTATTTATAA
22627296 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
22627316 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
22627342 ATAAA
1 ATAAA
22627347 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:22630368 original size:6 final size:6
Alignment explanation
Indices: 22630337--22630366 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22630327 GGTGTCAAGC
*
22630337 GAAGGG GAAGGG GAAGGG GAAGGG AAAGGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
22630367 AAGATCGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:22634139 original size:10 final size:10
Alignment explanation
Indices: 22634124--22634148 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22634114 TTCTACCTAA
22634124 CCAAAACATG
1 CCAAAACATG
22634134 CCAAAACATG
1 CCAAAACATG
22634144 CCAAA
1 CCAAA
22634149 CAAGTTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (10 bp):
CCAAAACATG
Found at i:22643038 original size:21 final size:20
Alignment explanation
Indices: 22643009--22643090 Score: 60
Period size: 21 Copynumber: 4.0 Consensus size: 20
22642999 TGTTAATATG
* *
22643009 TTATGAAAT-ATATGAAAAT
1 TTATAAAATCATATAAAAAT
22643028 ATTATATAAATCATATAAAAAT
1 -TTATA-AAATCATATAAAAAT
* * *
22643050 TTATAAAATTTATTTAAAAAG
1 TTATAAAA-TCATATAAAAAT
22643071 TTATAAATAT-ATATATAAAA
1 TTATAAA-ATCATATA-AAAA
22643091 CTAAAGAGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
20 11 0.22
21 30 0.59
22 10 0.20
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (20 bp):
TTATAAAATCATATAAAAAT
Found at i:22646128 original size:6 final size:6
Alignment explanation
Indices: 22646117--22646196 Score: 108
Period size: 6 Copynumber: 13.2 Consensus size: 6
22646107 TATTGTTGAT
22646117 AATGGG AATGGG AATGGG AAATGGG AATGGG AATGGG AATGGG AATGGG
1 AATGGG AATGGG AATGGG -AATGGG AATGGG AATGGG AATGGG AATGGG
* * *
22646166 AATGGG TAT-TG CATGGG AATGGG AAATGGG A
1 AATGGG AATGGG AATGGG AATGGG -AATGGG A
22646197 GGAGGGCACG
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
5 3 0.05
6 51 0.77
7 12 0.18
ACGTcount: A:0.34, C:0.01, G:0.46, T:0.19
Consensus pattern (6 bp):
AATGGG
Done.