Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 88 of 213
Found at i:24221630 original size:29 final size:28
Alignment explanation
Indices: 24221587--24221642 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
24221577 TTCAATTTCA
24221587 TTTTTTAAGAAAATTATAAATATTTTTAT
1 TTTTTTAAGAAAATTATAAA-ATTTTTAT
*
24221616 TTTTTTAA-AATAATTTTAAAATTTTTA
1 TTTTTTAAGAA-AATTATAAAATTTTTA
24221643 ATATTTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (28 bp):
TTTTTTAAGAAAATTATAAAATTTTTAT
Found at i:24221768 original size:14 final size:15
Alignment explanation
Indices: 24221739--24221772 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24221729 AAATTTTAAA
24221739 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
24221754 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
24221768 TTTTA
1 TTTTA
24221773 GATAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:24223948 original size:29 final size:29
Alignment explanation
Indices: 24223906--24224129 Score: 376
Period size: 29 Copynumber: 7.7 Consensus size: 29
24223896 ATATTATTTG
24223906 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
* * *
24223935 ATTTGATTAAAAACCTTAACCTTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
*
24223964 ATTTGATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
24223993 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
**
24224022 ATTTAATTAAAAACCCTAACCGAAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
**
24224051 ATTTAATTAAAAACCCTAACCGAAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
24224080 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAACCTA
24224109 ATTTAATTAAAAACCCTAACC
1 ATTTAATTAAAAACCCTAACC
24224130 TAATTTGATA
Statistics
Matches: 185, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 185 1.00
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.28
Consensus pattern (29 bp):
ATTTAATTAAAAACCCTAACCCTAACCTA
Found at i:24228476 original size:23 final size:23
Alignment explanation
Indices: 24228450--24228517 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
24228440 TTGATCTATA
24228450 AAATTTGAAAATCGAATCAATCC
1 AAATTTGAAAATCGAATCAATCC
* * *
24228473 AAA-TT---AATAG-ATCTAT-A
1 AAATTTGAAAATCGAATCAATCC
24228490 AAATTTGAAAATCGAATCAATCC
1 AAATTTGAAAATCGAATCAATCC
24228513 AAATT
1 AAATT
24228518 AATAGAGAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
17 3 0.09
18 7 0.21
19 4 0.12
21 4 0.12
22 7 0.21
23 8 0.24
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.29
Consensus pattern (23 bp):
AAATTTGAAAATCGAATCAATCC
Found at i:24228488 original size:40 final size:40
Alignment explanation
Indices: 24228442--24228523 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
24228432 AGAAATTTTT
24228442 GATCTATAAAATTTGAAAATCGAATCAATCCAAATTAATA
1 GATCTATAAAATTTGAAAATCGAATCAATCCAAATTAATA
24228482 GATCTATAAAATTTGAAAATCGAATCAATCCAAATTAATA
1 GATCTATAAAATTTGAAAATCGAATCAATCCAAATTAATA
24228522 GA
1 GA
24228524 GAACCAATTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (40 bp):
GATCTATAAAATTTGAAAATCGAATCAATCCAAATTAATA
Found at i:24232467 original size:276 final size:272
Alignment explanation
Indices: 24231978--24232523 Score: 966
Period size: 276 Copynumber: 2.0 Consensus size: 272
24231968 TTTAAATTTA
*
24231978 CCAAATCCCATTAGACCTTACTCAACTTTTTCTTGACTCATTCTTACTTTAGTTGACAACCAGAC
1 CCAAATCCCATTAGACCTTACTCAACCTTTTCTTGACTCATTCTTACTTTAGTTGACAACCAGAC
*
24232043 CCCACTCCCACCTATGGCATCAATATCACCTACCCAACCCACTCAACAGCATTTTGTCCCATCAC
66 CCCACTCCCACCTATCGCATCAATATCACCTACCCAACCCACTCAACAGCATTTTGTCCCATCAC
24232108 CAAGTCACACCGTCCCATCTTTTTCCCATATCCCTCATAATACTACTAACCCATTTGCTTATTCA
131 CAAGTCACACCGTCCCATCTTTTTCCCATATCCCTCATAATACTACTAACCCATTTGCTTATTCA
*
24232173 AATGATCATGCTTCTAGCCTACCATCTTCTTTACTGCATGTGTCAGATAGTTTGATGTTTGAGCC
196 AATGATCATGCTTCTAGCCAACCATCTTCTTTACTGCATGTGTCAGATAGTTTGATGTTTGAGCC
24232238 TCACCTAGTTTC
261 TCACCTAGTTTC
24232250 CCAAATCCCATTAGACCTTACTCAACCTTTTCTTGACTCATACTTTCTTACTTTAGTTGACAACC
1 CCAAATCCCATTAGACCTTACTCAACCTTTTCTTGACTC--A--TTCTTACTTTAGTTGACAACC
* * *
24232315 AGACCCCGCTCCCACCTATCGCATCAATATCACGTACCCAACCCACTCAACAGCCTTTTGTCCCA
62 AGACCCCACTCCCACCTATCGCATCAATATCACCTACCCAACCCACTCAACAGCATTTTGTCCCA
* *
24232380 TCACCAAGTCACATCGTCCCATCTTTTTCCCATATCCCTCATAATACTACTAACCCATTTGCTTG
127 TCACCAAGTCACACCGTCCCATCTTTTTCCCATATCCCTCATAATACTACTAACCCATTTGCTTA
**
24232445 TTCAAATGATCATGCTTCTAGCCAACCATCTTCTTTACTGCATGTGTCAGATAGTTTTCTGTTTG
192 TTCAAATGATCATGCTTCTAGCCAACCATCTTCTTTACTGCATGTGTCAGATAGTTTGATGTTTG
24232510 AGCCTCACCTAGTT
257 AGCCTCACCTAGTT
24232524 CGTCTTCTTT
Statistics
Matches: 260, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
272 38 0.15
274 1 0.00
276 221 0.85
ACGTcount: A:0.25, C:0.33, G:0.09, T:0.33
Consensus pattern (272 bp):
CCAAATCCCATTAGACCTTACTCAACCTTTTCTTGACTCATTCTTACTTTAGTTGACAACCAGAC
CCCACTCCCACCTATCGCATCAATATCACCTACCCAACCCACTCAACAGCATTTTGTCCCATCAC
CAAGTCACACCGTCCCATCTTTTTCCCATATCCCTCATAATACTACTAACCCATTTGCTTATTCA
AATGATCATGCTTCTAGCCAACCATCTTCTTTACTGCATGTGTCAGATAGTTTGATGTTTGAGCC
TCACCTAGTTTC
Found at i:24234385 original size:20 final size:20
Alignment explanation
Indices: 24234362--24234427 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 20
24234352 AATTTAATTA
*
24234362 AAATATATAAATTATATTTT
1 AAATATTTAAATTATATTTT
24234382 AAATATTTAAA-TATAATTATT
1 AAATATTTAAATTAT-ATT-TT
*
24234403 AAATATTTGTAATTAATATTTT
1 AAATATTT-AAATT-ATATTTT
24234425 AAA
1 AAA
24234428 AAATATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 3 0.08
20 13 0.33
21 10 0.26
22 7 0.18
23 4 0.10
24 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
AAATATTTAAATTATATTTT
Found at i:24236669 original size:15 final size:16
Alignment explanation
Indices: 24236639--24236672 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
24236629 AGACTTCAAT
24236639 TTTAAATTTGTGTTAA
1 TTTAAATTTGTGTTAA
24236655 TTTAAATTT-TGTTAA
1 TTTAAATTTGTGTTAA
24236670 TTT
1 TTT
24236673 TTTTATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (16 bp):
TTTAAATTTGTGTTAA
Found at i:24239216 original size:15 final size:15
Alignment explanation
Indices: 24239196--24239225 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24239186 AAAATACTGA
*
24239196 AATGAATACTCGTGG
1 AATGAAAACTCGTGG
24239211 AATGAAAACTCGTGG
1 AATGAAAACTCGTGG
24239226 TAGGAGAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (15 bp):
AATGAAAACTCGTGG
Found at i:24248454 original size:14 final size:14
Alignment explanation
Indices: 24248430--24248468 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24248420 AATCAAAGTC
*
24248430 AAAAT-AAAAAATG
1 AAAATGAAAAAAGG
24248443 AAAATGAAAAAAGG
1 AAAATGAAAAAAGG
*
24248457 AAAAAGAAAAAA
1 AAAATGAAAAAA
24248469 AGGAGAGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (14 bp):
AAAATGAAAAAAGG
Found at i:24249358 original size:6 final size:7
Alignment explanation
Indices: 24249338--24249388 Score: 70
Period size: 7 Copynumber: 7.3 Consensus size: 7
24249328 CAGAAAAATG
24249338 TGAAAAA
1 TGAAAAA
24249345 TGAAAAAA
1 TG-AAAAA
24249353 TG-AAAA
1 TGAAAAA
24249359 TGAAAAA
1 TGAAAAA
24249366 TGAAAAA
1 TGAAAAA
24249373 TGAAAAA
1 TGAAAAA
24249380 -GTAAAAA
1 TG-AAAAA
24249387 TG
1 TG
24249389 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 7 0.17
7 25 0.62
8 8 0.20
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:24250782 original size:44 final size:45
Alignment explanation
Indices: 24250670--24250803 Score: 171
Period size: 44 Copynumber: 3.0 Consensus size: 45
24250660 GTTGAAAAGC
*
24250670 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
* * **** **
24250715 AACATATCTTGTCTTTATGTACTGG-CATGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
*
24250759 AGCAGATCTTGTCTTCCCATACTGGTGGTGCAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
24250804 GGCGGATTTT
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 35 0.50
45 35 0.50
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
Found at i:24251145 original size:50 final size:50
Alignment explanation
Indices: 24251014--24251308 Score: 302
Period size: 50 Copynumber: 5.9 Consensus size: 50
24251004 GCAGCGGAGT
* * * * * * *
24251014 AGATTAAAGACACAACGGTGAATCTTGCTTCTCTAAAATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * * * ** * *
24251064 AGACTAAAGCCACGATGGCGAGTCTTACTTCCCTGGCGGTGCAGTGGAAT
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
** * * *
24251114 AGATTAAAGCCACAACGGTAAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * * * * *
24251164 AGATTAAAGCCACGACGACGAATATTACTTCCCTGGCATTGCATTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * *
24251214 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
*
24251264 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGT
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGT
24251309 CAGACAGAAG
Statistics
Matches: 190, Mismatches: 55, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 190 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
Found at i:24251161 original size:100 final size:100
Alignment explanation
Indices: 24250988--24251298 Score: 442
Period size: 100 Copynumber: 3.1 Consensus size: 100
24250978 GCCAGTAATT
* * * * * * ** *
24250988 TTACTTTCCAGGCGGTGCAGCGGAGTAGATTAAAGACACAACGGTGAATCTTGCTTCTCTAAAAT
1 TTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
* * *
24251053 TGCAGTTAAAAAGACTAAAGCCACGATGGCGAGTC
66 TGCAGTTAAAAAGATTAAAGCCACGACGGCGAATC
*
24251088 TTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCCACAACGGTAAATCTTGCTTCCCCGACAT
1 TTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
* *
24251153 TGCAGTTAAAAAGATTAAAGCCACGACGACGAATA
66 TGCAGTTAAAAAGATTAAAGCCACGACGGCGAATC
** * * *
24251188 TTACTTCCCTGGCATTGCATTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACAT
1 TTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
24251253 TGCAGTTAAAAAGATTAAAGCCACGACGGCGAATC
66 TGCAGTTAAAAAGATTAAAGCCACGACGGCGAATC
24251288 TTACTTCCCTG
1 TTACTTCCCTG
24251299 ACATTGCAGT
Statistics
Matches: 188, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 188 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
TTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT
TGCAGTTAAAAAGATTAAAGCCACGACGGCGAATC
Found at i:24252086 original size:11 final size:11
Alignment explanation
Indices: 24252072--24252096 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24252062 GGGATTTCAT
24252072 TTTTATTTTTC
1 TTTTATTTTTC
24252083 TTTTATTTTTC
1 TTTTATTTTTC
24252094 TTT
1 TTT
24252097 GTTATGCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTC
Found at i:24254960 original size:4 final size:4
Alignment explanation
Indices: 24254951--24254988 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
24254941 TTTAAGCCTC
*
24254951 ATGT ATGT ATGT ATGT ATGT ATTT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
24254989 CCAAGTCCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (4 bp):
ATGT
Found at i:24255133 original size:14 final size:14
Alignment explanation
Indices: 24255114--24255148 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
24255104 TTGTATTTAC
24255114 GAATCCGCATCTAA
1 GAATCCGCATCTAA
* *
24255128 GAATCCGCATGTAT
1 GAATCCGCATCTAA
24255142 GAATCCG
1 GAATCCG
24255149 TTTTACGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (14 bp):
GAATCCGCATCTAA
Found at i:24264149 original size:52 final size:52
Alignment explanation
Indices: 24263952--24264159 Score: 160
Period size: 52 Copynumber: 4.0 Consensus size: 52
24263942 TTTTTTAAAA
* * * *
24263952 AAAGAGAAAGTTTAGATTTTAACAAATAAAAATCT-ATTTTTTT-AGTTATTTT
1 AAAGAGAAAGTTTAAATTTTTA-AAATAAAATTTTGATTTTTTTAAG-TATTTT
* ** *
24264004 AAAG-GAAAGTTTAAAATTTTAAAGCAAAATTTTGATTTTTTTTTCAACTATTTT
1 AAAGAGAAAGTTTAAATTTTTAAAATAAAATTTTGA--TTTTTTT-AAGTATTTT
* * ** *
24264058 AAAGCA-AAAGCTTT-AATCTTTAAGA-AAAATAGTGCTTTTTTTAAGTCATTTT
1 AAAG-AGAAAG-TTTAAATTTTTAAAATAAAATTTTGATTTTTTTAAGT-ATTTT
* *
24264110 AAAG-GAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTAACTATTT
1 AAAGAGAAAGTTTAAATTTTTAAAATAAAATTTTGATTTTTTTAAGTATTT
24264160 CGAAATAAGG
Statistics
Matches: 121, Mismatches: 23, Indels: 25
0.72 0.14 0.15
Matches are distributed among these distances:
50 11 0.09
51 35 0.29
52 36 0.30
53 7 0.06
54 17 0.14
55 12 0.10
56 3 0.02
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (52 bp):
AAAGAGAAAGTTTAAATTTTTAAAATAAAATTTTGATTTTTTTAAGTATTTT
Found at i:24264153 original size:30 final size:31
Alignment explanation
Indices: 24264119--24264180 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
24264109 TAAAGGAAAG
*
24264119 TTTAAAT-TTTTAAAATAAAGTTTTGATTTT
1 TTTAAATATTTCAAAATAAAGTTTTGATTTT
* * * *
24264149 TTTAACTATTTCGAAATAAGGTTTTGGTTTT
1 TTTAAATATTTCAAAATAAAGTTTTGATTTT
24264180 T
1 T
24264181 AAGAAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.55
Consensus pattern (31 bp):
TTTAAATATTTCAAAATAAAGTTTTGATTTT
Found at i:24267049 original size:59 final size:59
Alignment explanation
Indices: 24266983--24267101 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 59
24266973 GCTGGAACCA
* * *
24266983 TCATTTTACTCAAATTCATCAAAAGGATAGGAGATGGGCGTTTCTTAGGATACGTACAG
1 TCATTTTACTCAAATTCATCAAAAGGAAAGGAGACGGGCGGTTCTTAGGATACGTACAG
* *
24267042 TCATTTTACTCAAATTCATCAGAAGGAAAGGAGACGGGTGGTTCTTAGGATACGTACAG
1 TCATTTTACTCAAATTCATCAAAAGGAAAGGAGACGGGCGGTTCTTAGGATACGTACAG
24267101 T
1 T
24267102 TATTGTCCGT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (59 bp):
TCATTTTACTCAAATTCATCAAAAGGAAAGGAGACGGGCGGTTCTTAGGATACGTACAG
Found at i:24269821 original size:33 final size:33
Alignment explanation
Indices: 24269779--24269849 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
24269769 AGACCCAAGC
24269779 TCCAAGGCCACCATGGGAAAGGTATGTGTTTGA
1 TCCAAGGCCACCATGGGAAAGGTATGTGTTTGA
24269812 TCCAAGGCCACCATGGGAAAGGTATGTGTTTGA
1 TCCAAGGCCACCATGGGAAAGGTATGTGTTTGA
24269845 TCCAA
1 TCCAA
24269850 TTCCTATCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (33 bp):
TCCAAGGCCACCATGGGAAAGGTATGTGTTTGA
Found at i:24283118 original size:42 final size:42
Alignment explanation
Indices: 24283034--24283455 Score: 526
Period size: 42 Copynumber: 10.1 Consensus size: 42
24283024 AAGGAAAACA
*
24283034 TTCATTGCATTTAGAGACCCAGGT-TGGAGGTCCATTTACCT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* ** * *
24283075 TTCATTACATTTAGAGACATAGGTGTAGAGGTCCATTTACCT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
** *
24283117 TTCATAACATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
*
24283159 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
*
24283201 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * *
24283243 TTCATTGCATTTAGATATCTAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * *
24283285 TTCATTGCATTTAGAGGCCTAGGTATGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * * *
24283327 TTCATTACATTTAGAGACCTAGATGTAGAGGTCTATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * *
24283369 TTCATTCCATTTAGGGGCCCAGGTGTGGAGG-CCTATTGACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCC-ATTTACTT
* * *
24283411 TTCATTGCATTTAGA-AGCCTAGGTGTGGAGGTCCGTCTACTT
1 TTCATTGCATTTAGAGA-CCCAGGTGTGGAGGTCCATTTACTT
24283453 TTC
1 TTC
24283456 TAGTTTAGAG
Statistics
Matches: 329, Mismatches: 48, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
41 22 0.07
42 305 0.93
43 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
Found at i:24284401 original size:52 final size:52
Alignment explanation
Indices: 24284299--24284406 Score: 132
Period size: 51 Copynumber: 2.1 Consensus size: 52
24284289 TTTTTTAAAA
* *
24284299 AAAGAGAAAGTTTAGATTTTAACAAATAAAATTATATTTTTTTAGTTATTTC
1 AAAGAGAAAGTTTAAATTTTAACAAACAAAATTATATTTTTTTAGTTATTTC
* *
24284351 AAAG-GAAAGTTTAAATTTTTA-AAACAAAATTTTGATTTTTTTCAAG-TATTTC
1 AAAGAGAAAGTTTAAATTTTAACAAACAAAATTAT-ATTTTTTT--AGTTATTTC
24284403 AAAG
1 AAAG
24284407 TAAAAGCTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
50 10 0.20
51 23 0.47
52 14 0.29
53 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (52 bp):
AAAGAGAAAGTTTAAATTTTAACAAACAAAATTATATTTTTTTAGTTATTTC
Found at i:24284589 original size:149 final size:150
Alignment explanation
Indices: 24284284--24284600 Score: 367
Period size: 149 Copynumber: 2.1 Consensus size: 150
24284274 GGAAAATTTT
* * **
24284284 TGATTTTTTTTAAAAAAAGAGAAAGTTTAGATTTTAACAAATAAAATTATATTTTTTTAGTTATT
1 TGATTTTTTTTAAAAAAAGAGAAAGTTAAGATTTTAACAAATAAAATTATATTTTTTAAGCCATT
* * * *
24284349 TCAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTCAAGTATTTCAAAGTAAAAGC
66 TCAAAGGAAAGATTAAAATTTTAAAACAAAATTTTGATTTTCTTCAACTATTTCAAAGTAAAAGC
*
24284414 TTTAATCTTTAAGAAAATAG
131 TTTAATCTTTAAGAAAATAA
* *
24284434 TG-TTTTTTTTTAAAAAGGAGAAAGTTAAGATTTTGAA-AAATAAAAATT-TATTTTTTAAGCCA
1 TGATTTTTTTTAAAAAAAGAGAAAGTTAAGATTTT-AACAAAT-AAAATTATATTTTTTAAGCCA
* * * *
24284496 TTTTAAAGGAAAGATTAAAATTTTCAAATAAATTTTTGATTTTCTT-AACTATTTCGAAA-T-AA
64 TTTCAAAGGAAAGATTAAAATTTTAAAACAAAATTTTGATTTTCTTCAACTATTTC-AAAGTAAA
* * * *
24284558 GGTTTTGATTTTTAAGAAAAGTAA
128 AGCTTTAATCTTTAAGAAAA-TAA
*
24284582 TGATTTTTCTTAAAGAAAA
1 TGATTTTTTTTAAA-AAAA
24284601 CTTTGATTTT
Statistics
Matches: 139, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
147 18 0.13
148 13 0.09
149 95 0.68
150 13 0.09
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (150 bp):
TGATTTTTTTTAAAAAAAGAGAAAGTTAAGATTTTAACAAATAAAATTATATTTTTTAAGCCATT
TCAAAGGAAAGATTAAAATTTTAAAACAAAATTTTGATTTTCTTCAACTATTTCAAAGTAAAAGC
TTTAATCTTTAAGAAAATAA
Found at i:24285572 original size:13 final size:13
Alignment explanation
Indices: 24285554--24285578 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24285544 CTATTTGAGA
24285554 TCTTTTTTTCTTT
1 TCTTTTTTTCTTT
24285567 TCTTTTTTTCTT
1 TCTTTTTTTCTT
24285579 CTTTCCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:24285580 original size:16 final size:15
Alignment explanation
Indices: 24285556--24285589 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
24285546 ATTTGAGATC
*
24285556 TTTTTTTCTTTTCTT
1 TTTTTTTCTTTCCTT
24285571 TTTTTCTTCTTTCCTT
1 TTTTT-TTCTTTCCTT
24285587 TTT
1 TTT
24285590 GACAGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTCTTTCCTT
Found at i:24289381 original size:31 final size:32
Alignment explanation
Indices: 24289346--24289408 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
24289336 TAGAAGAAAG
*
24289346 TTTAAAT-TTTTAAAACAAAGTTTTGATTTTT
1 TTTAAATATTTCAAAACAAAGTTTTGATTTTT
* * * *
24289377 TTTAACTATTTCGAAATAAGGTTTTGATTTTT
1 TTTAAATATTTCAAAACAAAGTTTTGATTTTT
24289409 AAGAAAAGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.32, C:0.05, G:0.10, T:0.54
Consensus pattern (32 bp):
TTTAAATATTTCAAAACAAAGTTTTGATTTTT
Found at i:24289425 original size:153 final size:151
Alignment explanation
Indices: 24289119--24289436 Score: 387
Period size: 153 Copynumber: 2.1 Consensus size: 151
24289109 AAAAGTTTTG
* * * *
24289119 ATTTTTTT-TAAAAAAAAGAAAGTTTAGATTTTAACAAATAAAAATATGTTTTTTTTAGTTATTT
1 ATTTTTTTAAAAAAAAAAGAAAGCTTAGATTTTAACAAATAAAAATATGTTTTTTTAAGTCATTT
* *
24289183 TAAAGGAAAGTAGAAATTTTTAGAACAAAATTTTAATTTTTTTCAACTATTTTAAAGTAAAATCT
66 TAAAGGAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTTCAACTATTTGAAAGTAAAATCT
24289248 TTAATCTTTAAGAAAAATAGT
131 TTAATCTTTAAGAAAAATAGT
24289269 ATTTTTTTAAAAAAAAAGGAGAAAGCTTAGATTTTGAA-AAATAAAAATATGTTTTTTTAAGTCA
1 ATTTTTTTAAAAAAAAA--AGAAAGCTTAGATTTT-AACAAATAAAAATATGTTTTTTTAAGTCA
** * * *
24289333 TTTTAGAA-GAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTATTTCGAAA-TAA
63 TTTTA-AAGGAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTTCAACTATTT-GAAAGTAA
** * * * *
24289396 GGT-TTTGATTTTTAAGAAAAGTAAT
126 AATCTTTAATCTTTAAGAAAAATAGT
24289421 -TATTTTTTAAAAAAAA
1 AT-TTTTTTAAAAAAAA
24289437 CTTTGATTTT
Statistics
Matches: 144, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
150 8 0.06
151 8 0.06
152 32 0.22
153 89 0.62
154 7 0.05
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (151 bp):
ATTTTTTTAAAAAAAAAAGAAAGCTTAGATTTTAACAAATAAAAATATGTTTTTTTAAGTCATTT
TAAAGGAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTTCAACTATTTGAAAGTAAAATCT
TTAATCTTTAAGAAAAATAGT
Found at i:24292253 original size:35 final size:35
Alignment explanation
Indices: 24292210--24292279 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
24292200 CGAAAAACCT
24292210 AAAAAAACACACTTTCTCGTAGTTGAAGGTGCAAA
1 AAAAAAACACACTTTCTCGTAGTTGAAGGTGCAAA
24292245 AAAAAAACACACTTTCTCGTAGTTGAAGGTGCAAA
1 AAAAAAACACACTTTCTCGTAGTTGAAGGTGCAAA
24292280 TTCATGAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (35 bp):
AAAAAAACACACTTTCTCGTAGTTGAAGGTGCAAA
Found at i:24293151 original size:19 final size:19
Alignment explanation
Indices: 24293127--24293163 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24293117 TTAATTAAAT
24293127 TTTTTATTTCTATTTTTTA
1 TTTTTATTTCTATTTTTTA
24293146 TTTTTATTTCTATTTTTT
1 TTTTTATTTCTATTTTTT
24293164 TAGAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTATTTCTATTTTTTA
Found at i:24293163 original size:13 final size:13
Alignment explanation
Indices: 24293125--24293154 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24293115 GCTTAATTAA
24293125 ATTTTTTATTTCT
1 ATTTTTTATTTCT
*
24293138 ATTTTTTATTTTT
1 ATTTTTTATTTCT
24293151 ATTT
1 ATTT
24293155 CTATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTTTTATTTCT
Found at i:24295737 original size:6 final size:6
Alignment explanation
Indices: 24295726--24295759 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
24295716 ATCTAAAAAT
24295726 CTAATA CTAATA CTAATA CTAATA CTAAT- CTAAT
1 CTAATA CTAATA CTAATA CTAATA CTAATA CTAAT
24295760 GCAGAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (6 bp):
CTAATA
Found at i:24295749 original size:18 final size:17
Alignment explanation
Indices: 24295712--24295759 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 17
24295702 ACTAAAATAA
*
24295712 ACTAATCTAAAAATCTAAT
1 ACTAATCT-AATA-CTAAT
24295731 ACTAATACTAATACTAAT
1 ACTAAT-CTAATACTAAT
24295749 ACTAATCTAAT
1 ACTAATCTAAT
24295760 GCAGAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 11 0.41
19 9 0.33
20 2 0.07
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (17 bp):
ACTAATCTAATACTAAT
Found at i:24295837 original size:22 final size:22
Alignment explanation
Indices: 24295798--24295839 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24295788 AAGTAGAATA
*
24295798 ATAATATAAATAATAAAATAAT
1 ATAATATAAATAACAAAATAAT
24295820 ATAATA-AAATACACAAAATA
1 ATAATATAAATA-ACAAAATA
24295840 GAGAGGGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
ATAATATAAATAACAAAATAAT
Found at i:24304525 original size:50 final size:50
Alignment explanation
Indices: 24304450--24304550 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
24304440 TAAATACTGC
24304450 AGGTGAATTAGTCAGCCCAAACAGTATAACCAGAAACTCATATTGCCCAT
1 AGGTGAATTAGTCAGCCCAAACAGTATAACCAGAAACTCATATTGCCCAT
24304500 AGGTGAATTAGTCAGCCCAAACAGTATAACCAGAAACTCATATTGCCCAT
1 AGGTGAATTAGTCAGCCCAAACAGTATAACCAGAAACTCATATTGCCCAT
24304550 A
1 A
24304551 CTTGGTTCTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.22
Consensus pattern (50 bp):
AGGTGAATTAGTCAGCCCAAACAGTATAACCAGAAACTCATATTGCCCAT
Found at i:24305218 original size:119 final size:119
Alignment explanation
Indices: 24305007--24305250 Score: 452
Period size: 119 Copynumber: 2.1 Consensus size: 119
24304997 TGCTTGTATC
*
24305007 TTTAACTCAAATACCTTAGTGTCTAACTCATATGCCAAATAAGCATCATACCCTTTTCTAACACA
1 TTTAACTCAAATACCTTAGTGTCTAACACATATGCCAAATAAGCATCATACCCTTTTCTAACACA
24305072 CCTCTGAGCTGTCATCACCAAAATCACATTAGATAATTCCTCTGTTTGATCAGA
66 CCTCTGAGCTGTCATCACCAAAATCACATTAGATAATTCCTCTGTTTGATCAGA
*
24305126 TTTAACTCAAATACCTTAGTGTCTAACACATATGCCAAATAAGCATCATACCCTTTTCTGACACA
1 TTTAACTCAAATACCTTAGTGTCTAACACATATGCCAAATAAGCATCATACCCTTTTCTAACACA
* *
24305191 CCTCTGAGCTGTGATCACCGAAATCACATTAGATAATTCCTCTGTTTGATCAGA
66 CCTCTGAGCTGTCATCACCAAAATCACATTAGATAATTCCTCTGTTTGATCAGA
24305245 TTTAAC
1 TTTAAC
24305251 CTGAAGTAAT
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.32, C:0.25, G:0.10, T:0.32
Consensus pattern (119 bp):
TTTAACTCAAATACCTTAGTGTCTAACACATATGCCAAATAAGCATCATACCCTTTTCTAACACA
CCTCTGAGCTGTCATCACCAAAATCACATTAGATAATTCCTCTGTTTGATCAGA
Found at i:24320088 original size:65 final size:66
Alignment explanation
Indices: 24320012--24320145 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
24320002 TCATAATTGG
* *
24320012 AATGTTAACATGGTA-TTTTATTTGCATCATGATAATTTTAGCTCTTAATTTTTGCACATTGCAT
1 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
24320076 C
66 C
*
24320077 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAATTCTTAATTTTTGCACATTGCAT
1 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
24320142 C
66 C
24320143 AAT
1 AAT
24320146 TTAATTTTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
65 14 0.22
66 51 0.78
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.46
Consensus pattern (66 bp):
AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
C
Found at i:24322328 original size:19 final size:20
Alignment explanation
Indices: 24322290--24322329 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
24322280 TTCTCTTATA
* *
24322290 TAAAATGTATTTTAATATTT
1 TAAAATGTATTTGAAAATTT
24322310 TAAAAT-TATTTGAAAATTT
1 TAAAATGTATTTGAAAATTT
24322329 T
1 T
24322330 GCTAGATTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TAAAATGTATTTGAAAATTT
Found at i:24324049 original size:47 final size:47
Alignment explanation
Indices: 24323995--24324210 Score: 131
Period size: 47 Copynumber: 4.6 Consensus size: 47
24323985 TGCGTTGTGA
*
24323995 ATGAACCACTGGTCGAGCAGATGAACTACCGACTAAAATACTGGTGG
1 ATGAACCACTAGTCGAGCAGATGAACTACCGACTAAAATACTGGTGG
* * * * * ** * * *
24324042 ATGAACCACCCATTTGTGCAGATCAA--AGTTG-CTAATAT-GTTGTGG
1 ATGAACCA-CTAGTCGAGCAGATGAACTA-CCGACTAAAATACTGGTGG
* *
24324087 ATGAACCACTAGTCGAGCAGATG-ACTGCTGACTAAAATA-TGTTGTGG
1 ATGAACCACTAGTCGAGCAGATGAACTACCGACTAAAATACTG--GTGG
* * * * * * *
24324134 ATAAACCACTGGTCGAACAGATG-ACTGCCAACTAGAATACGTTGTGG
1 ATGAACCACTAGTCGAGCAGATGAACTACCGACTAAAATAC-TGGTGG
* * *
24324181 ATAAACCACTAGTCGAGTAGATGAATTACC
1 ATGAACCACTAGTCGAGCAGATGAACTACC
24324211 AGCTACTTCC
Statistics
Matches: 126, Mismatches: 32, Indels: 21
0.70 0.18 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.10
45 20 0.16
46 7 0.06
47 70 0.56
48 15 0.12
49 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (47 bp):
ATGAACCACTAGTCGAGCAGATGAACTACCGACTAAAATACTGGTGG
Found at i:24324865 original size:31 final size:31
Alignment explanation
Indices: 24324808--24324866 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
24324798 AAAATATTGA
*
24324808 TTCTAAATATAAAACAAATATTTATATAGAT
1 TTCTAAATATAAAACAAATATATATATAGAT
24324839 TTCTAAA-ATAAATA-AAATATCATATATA
1 TTCTAAATATAAA-ACAAATAT-ATATATA
24324867 ATGATAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (31 bp):
TTCTAAATATAAAACAAATATATATATAGAT
Found at i:24328430 original size:13 final size:13
Alignment explanation
Indices: 24328409--24328477 Score: 84
Period size: 13 Copynumber: 5.3 Consensus size: 13
24328399 TTAGTACGCA
24328409 AACCCTATATGTG
1 AACCCTATATGTG
*
24328422 AACCTTATATGTG
1 AACCCTATATGTG
** *
24328435 AACTATATATGCG
1 AACCCTATATGTG
*
24328448 AACCCTATGTGTG
1 AACCCTATATGTG
*
24328461 AACCCTATATGCG
1 AACCCTATATGTG
24328474 AACC
1 AACC
24328478 TGTCATGTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (13 bp):
AACCCTATATGTG
Found at i:24333106 original size:14 final size:14
Alignment explanation
Indices: 24333087--24333126 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24333077 TTGATTGCCA
24333087 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
24333101 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
24333115 GGAAAATGTTTT
1 GTAAAATGTTTT
24333127 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:24333135 original size:20 final size:20
Alignment explanation
Indices: 24333110--24333149 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24333100 CGTAAAATGA
*
24333110 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
24333130 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
24333150 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:24333139 original size:34 final size:35
Alignment explanation
Indices: 24333095--24333161 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
24333085 CAGTAAAATG
*
24333095 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
24333129 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
24333162 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:24333165 original size:14 final size:15
Alignment explanation
Indices: 24333089--24333165 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
24333079 GATTGCCAGT
* *
24333089 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
24333103 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
24333117 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
24333137 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
24333152 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
24333166 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:24341195 original size:20 final size:20
Alignment explanation
Indices: 24341158--24341200 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
24341148 TAGAACTAAC
* * *
24341158 ATGCGAAGCCTTATGTAAGT
1 ATGCGAAACCTTAGGTAAAT
*
24341178 ATGCGAAACTTTAGGTAAAT
1 ATGCGAAACCTTAGGTAAAT
24341198 ATG
1 ATG
24341201 TATGTGAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (20 bp):
ATGCGAAACCTTAGGTAAAT
Found at i:24343579 original size:109 final size:107
Alignment explanation
Indices: 24343302--24343731 Score: 549
Period size: 109 Copynumber: 4.0 Consensus size: 107
24343292 AAAATTCAAG
* * * * *
24343302 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* ** **
24343366 ATTTCTAAACGCAAAACATTGCCTTATTTTTTAAATTAAAAAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATT-TTAAAA
* *
24343410 AAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
24343475 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTGGAAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTT--AAAA
* * * **
24343519 AGGATATTAAG-TCATTTGGTGGAACGAGAAATCGAAATCCAGTACCTTAGGGCAAATTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* * *
24343583 ATTTCCAAACGCAAAACATTGCTTTATTTTTAAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTA-TTTTGAAAA-TTTTAAAA
* *
24343628 AGAATATTTAGCTATTTGGTCGAACGAGAAATCGAAACTCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* *
24343693 TTTCCAAACGCAAAATATTACCTTATTTTGAAATATTTT
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAA-ATTTT
24343732 CTTCTTTTTT
Statistics
Matches: 279, Mismatches: 35, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
108 100 0.36
109 166 0.59
110 9 0.03
111 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (107 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTAAAA
Found at i:24343697 original size:218 final size:218
Alignment explanation
Indices: 24343324--24343731 Score: 640
Period size: 218 Copynumber: 1.9 Consensus size: 218
24343314 AATTTGGCTA
* ** * *
24343324 AACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCTAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
*
24343389 TTATTTTTTAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATA
66 TTATTTTTAAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATA
*
24343454 CCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA-ATTTTGGAAA
131 CCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATATTTTGGAAA
24343518 AAGGATATTAAGTCATTTGGTGG
196 AAGGATATTAAGTCATTTGGTGG
* * *
24343541 AACGAGAAATCGAAATCCAGTACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCT
1 AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
*** * * *
24343606 TTATTTTTAAAAAGTTTTTAAAAGA-ATATTTAGCTATTTGGTCGAACGAGAAATCGAAACTCAG
66 TTATTTTT-AAAA-TTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAA
24343670 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATATTTT
129 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATATTTT
24343732 CTTCTTTTTT
Statistics
Matches: 172, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
217 65 0.38
218 95 0.55
219 12 0.07
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (218 bp):
AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTTAAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATA
CCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATATTTTGGAAA
AAGGATATTAAGTCATTTGGTGG
Found at i:24343888 original size:12 final size:12
Alignment explanation
Indices: 24343863--24343915 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
24343853 ATAAACAAAC
24343863 TAAAGCATAAAAA
1 TAAA-CATAAAAA
*
24343876 TAAACATATAAA
1 TAAACATAAAAA
* * *
24343888 TAAATACATAAA
1 TAAACATAAAAA
*
24343900 TGAACATAAAAA
1 TAAACATAAAAA
24343912 TAAA
1 TAAA
24343916 GGAAAATATA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
12 28 0.88
13 4 0.12
ACGTcount: A:0.68, C:0.08, G:0.04, T:0.21
Consensus pattern (12 bp):
TAAACATAAAAA
Found at i:24344045 original size:39 final size:39
Alignment explanation
Indices: 24344002--24344101 Score: 184
Period size: 39 Copynumber: 2.6 Consensus size: 39
24343992 AATTATGAAA
24344002 ATATATAAA-ATATATATAAGTATATATTTTAAAATTACT
1 ATATA-AAATATATATATAAGTATATATTTTAAAATTACT
24344041 ATATAAAATATATATATAAGTATATATTTTAAAATTACT
1 ATATAAAATATATATATAAGTATATATTTTAAAATTACT
24344080 ATATAAAATATATATATAAGTA
1 ATATAAAATATATATATAAGTA
24344102 CGCATATTCA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
38 3 0.05
39 57 0.95
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (39 bp):
ATATAAAATATATATATAAGTATATATTTTAAAATTACT
Found at i:24344049 original size:13 final size:12
Alignment explanation
Indices: 24344002--24344098 Score: 65
Period size: 13 Copynumber: 7.7 Consensus size: 12
24343992 AATTATGAAA
24344002 ATATATAAAA-T
1 ATATATAAAATT
*
24344013 ATATAT-AAGTAT
1 ATATATAAAAT-T
*
24344025 ATATTTTAAAATT
1 ATA-TATAAAATT
24344038 ACTATATAAAA-T
1 A-TATATAAAATT
*
24344050 ATATATATAAGTAT
1 ATATATA-AAAT-T
*
24344064 ATATTTTAAAATT
1 ATA-TATAAAATT
24344077 ACTATATAAAATAT
1 A-TATATAAAAT-T
24344091 ATATATAA
1 ATATATAA
24344099 GTACGCATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
10 2 0.03
11 12 0.18
12 8 0.12
13 26 0.39
14 16 0.24
15 3 0.04
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (12 bp):
ATATATAAAATT
Found at i:24344380 original size:3 final size:3
Alignment explanation
Indices: 24344372--24344426 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
24344362 ATATAAAAGC
24344372 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
24344420 AAC AAT A
1 AAT AAT A
24344427 GGACTAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:24346123 original size:45 final size:45
Alignment explanation
Indices: 24346041--24346155 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 45
24346031 CTTCAATGTA
* *
24346041 CTCCACTGT-AGTCACAGGGAGGTAAAATCTGCCATCTTCGA-TCTG
1 CTCCACTGTCAGT-ACAGGAAGGCAAAATCTGCCATCTT-GAGTCTG
* * * * *
24346086 CTCCGCTGTCAGTACAGGAAGGCAAACTCTGCTATCTTTAGTTTG
1 CTCCACTGTCAGTACAGGAAGGCAAAATCTGCCATCTTGAGTCTG
* *
24346131 CTCCACTTTCAGTACAAGAAGGCAA
1 CTCCACTGTCAGTACAGGAAGGCAA
24346156 GACTGGTTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.93
46 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (45 bp):
CTCCACTGTCAGTACAGGAAGGCAAAATCTGCCATCTTGAGTCTG
Found at i:24346260 original size:88 final size:88
Alignment explanation
Indices: 24346143--24347049 Score: 1428
Period size: 88 Copynumber: 10.3 Consensus size: 88
24346133 CCACTTTCAG
* * *
24346143 TACAAGAAGGCAAGA-CTGGTT-TCTTCAACCAGCTCC-GCTACAACCGAGAGAGGCAAGGTTTG
1 TACAGGAAGGCAAGATCT-TTTGTCTTCAACCAGCTCCATC-ACAACCGAGAGAGGCAAGGTTTG
* **
24346205 TGTCTTCGACTTGCTTCATTGTCAA
64 TGTCTTCGACCTGCTTCGCTGTCAA
* * * * * *
24346230 TGCAGGAAGGCAAGATCTATTGTCTTCAACCAACTCTACCACAACCGAGAGAGGCAAGGTTTGTC
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
*
24346295 TTTTCGACCTGCTTCGCTGTCAA
66 TCTTCGACCTGCTTCGCTGTCAA
* * *
24346318 TGCAGGAAAGCAAGATCTTTTTTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
*
24346383 TCTTCGATCTGCTTCGCTGTCAA
66 TCTTCGACCTGCTTCGCTGTCAA
* * *
24346406 TGCAGGAAGGTAAGATCTTTTTTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
*
24346471 TCTTCGATCTGCTTCGCTGTCAA
66 TCTTCGACCTGCTTCGCTGTCAA
24346494 TACAGG-AGCGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGT
1 TACAGGAAG-GCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGT
24346558 GTCTTCGACCTGCTTCGCTGTCAA
65 GTCTTCGACCTGCTTCGCTGTCAA
24346582 TACAGG-AGCGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGT
1 TACAGGAAG-GCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGT
24346646 GTCTTCGACCTGCTTCGCTGTCAA
65 GTCTTCGACCTGCTTCGCTGTCAA
*
24346670 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTCTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
* *
24346735 TCTTCGATCTGCTTCGCTATCAA
66 TCTTCGACCTGCTTCGCTGTCAA
*
24346758 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTCTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
*
24346823 TCTTTGACCTGCTTCGCTGTCAA
66 TCTTCGACCTGCTTCGCTGTCAA
* *
24346846 TGCGGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
*
24346911 TCTTCGACCTGCTTCGCTGTTAA
66 TCTTCGACCTGCTTCGCTGTCAA
*
24346934 TACAGGTAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
1 TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
* *
24346999 TCTTCGATCTACTTCGCTGTCAA
66 TCTTCGACCTGCTTCGCTGTCAA
* * *
24347022 TGCAGGAAGCCAAGATCTGTTGTCTTCA
1 TACAGGAAGGCAAGATCTTTTGTCTTCA
24347050 CTGATCTGTT
Statistics
Matches: 768, Mismatches: 47, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
87 17 0.02
88 748 0.97
89 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (88 bp):
TACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTG
TCTTCGACCTGCTTCGCTGTCAA
Found at i:24348094 original size:21 final size:21
Alignment explanation
Indices: 24348068--24348114 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
24348058 GGTATAGCAA
24348068 GATCACCACATGCCCC-TATCT
1 GATCACCACATGCCCCGT-TCT
**
24348089 GATCACTTCATGCCCCGTTCT
1 GATCACCACATGCCCCGTTCT
24348110 GATCA
1 GATCA
24348115 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.38, G:0.13, T:0.28
Consensus pattern (21 bp):
GATCACCACATGCCCCGTTCT
Found at i:24349111 original size:8 final size:9
Alignment explanation
Indices: 24349067--24349109 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
24349057 GACTTTGATT
*
24349067 TTTTTTTGTT
1 TTTTTTTG-A
*
24349077 TTTTTTTTA
1 TTTTTTTGA
24349086 TTTTTTTGA
1 TTTTTTTGA
24349095 TTTTTTTGA
1 TTTTTTTGA
24349104 TTTTTT
1 TTTTTT
24349110 GAAAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:24353335 original size:107 final size:107
Alignment explanation
Indices: 24353145--24353564 Score: 542
Period size: 107 Copynumber: 3.9 Consensus size: 107
24353135 AATTCAAGAG
* * * * *
24353145 GATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAAT
1 GATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAAT
* **
24353209 TTCTAAACGCAAAACATTGCCTTATTTTGAAATTAAAAAAAAA
65 TTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTAAAAAAA
*
24353252 GATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGAATT
1 GATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATT
* * *
24353317 TCCAAACGCAAAATATTGCCTTA-TTTGAAATTGTTGAAAAAG
66 TCCAAACGCAAAACATTGCCTTATTTTGAAATT-TTAAAAAAA
* * * **
24353359 GATATTAAG-TCATTTGGTGGAACGAGAAATCGAAATCCAGTACCTTAGGGCAAATTCCTCGAAT
1 GATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAAT
* * *
24353423 TTCCAAACGCAAAACATTGCCTTATTTTTAAAAAGTTTTTAAAAGA
65 TTCCAAACGCAAAACATTGCCTTA-TTTT-GAAA-TTTTAAAAAAA
*
24353469 -ATATTTAGCTATTTGGTCGAACGAGAAATCGAAACTCAGTACCTTAGGGCACGTTCCTCGAATT
1 GATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATT
* **
24353533 TCCAAACGCAAAATATTAACTTATTTTGAAAT
66 TCCAAACGCAAAACATTGCCTTATTTTGAAAT
24353565 ATTTTCTTCT
Statistics
Matches: 272, Mismatches: 33, Indels: 17
0.84 0.10 0.05
Matches are distributed among these distances:
106 11 0.04
107 165 0.61
108 5 0.02
109 79 0.29
110 10 0.04
111 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (107 bp):
GATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATT
TCCAAACGCAAAACATTGCCTTATTTTGAAATTTTAAAAAAA
Found at i:24353535 original size:216 final size:215
Alignment explanation
Indices: 24353165--24353564 Score: 615
Period size: 216 Copynumber: 1.9 Consensus size: 215
24353155 AATTTGGCTA
* ** * *
24353165 AACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCTAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
*
24353230 TTATTTTGAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATAC
66 TTATTTTAAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATAC
**
24353295 CTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA-TTTGAAATTGTTGAAAAAG
131 CTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTAACTTATTTTGAAATTGTTGAAAAAG
24353359 GATATTAAGTCATTTGGTGG
196 GATATTAAGTCATTTGGTGG
* *
24353379 AACGAGAAATCGAAATCCAGTACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
*** * * *
24353444 TTATTTTTAAAAAGTTTTTAAAAGA-ATATTTAGCTATTTGGTCGAACGAGAAATCGAAACTCAG
66 TTA-TTTT-AAAA-TTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAA
24353508 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTAACTTATTTTGAAAT
128 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTAACTTATTTTGAAAT
24353565 ATTTTCTTCT
Statistics
Matches: 166, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
214 61 0.37
215 4 0.02
216 86 0.52
217 15 0.09
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (215 bp):
AACGAGAAATCGAAACCCAGCACCTTAGGGCAAATTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTAAAATTAAAAAAAAAGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAATAC
CTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTAACTTATTTTGAAATTGTTGAAAAAG
GATATTAAGTCATTTGGTGG
Found at i:24353726 original size:12 final size:12
Alignment explanation
Indices: 24353701--24353753 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
24353691 ATAAACAAAC
24353701 TAAAGCATAAAAA
1 TAAA-CATAAAAA
*
24353714 TAAACATATAAA
1 TAAACATAAAAA
* * *
24353726 TAAATACATAAA
1 TAAACATAAAAA
*
24353738 TGAACATAAAAA
1 TAAACATAAAAA
24353750 TAAA
1 TAAA
24353754 GGAAAATATA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
12 28 0.88
13 4 0.12
ACGTcount: A:0.68, C:0.08, G:0.04, T:0.21
Consensus pattern (12 bp):
TAAACATAAAAA
Found at i:24353785 original size:9 final size:9
Alignment explanation
Indices: 24353756--24353789 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
24353746 AAAATAAAGG
24353756 AAAATATAT
1 AAAATATAT
24353765 GAAAAT-TAT
1 -AAAATATAT
24353774 AAAATATAT
1 AAAATATAT
24353783 AAAATAT
1 AAAATAT
24353790 GTATGTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.22
9 13 0.57
10 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAATATAT
Found at i:24353887 original size:13 final size:13
Alignment explanation
Indices: 24353840--24353897 Score: 59
Period size: 13 Copynumber: 4.6 Consensus size: 13
24353830 AATTATGAAA
24353840 ATATATAAAATAT
1 ATATATAAAATAT
**
24353853 ATATA-AGTATAT
1 ATATATAAAATAT
*
24353865 AT-TTTAAAAT-T
1 ATATATAAAATAT
24353876 ACTATATAAAATAT
1 A-TATATAAAATAT
24353890 ATATATAA
1 ATATATAA
24353898 GTACGCATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
11 3 0.09
12 11 0.31
13 19 0.54
14 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (13 bp):
ATATATAAAATAT
Found at i:24354179 original size:3 final size:3
Alignment explanation
Indices: 24354171--24354219 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
24354161 ATATAGAAGC
*
24354171 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
24354219 A
1 A
24354220 GGACTAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:24356243 original size:43 final size:43
Alignment explanation
Indices: 24356192--24356351 Score: 216
Period size: 43 Copynumber: 3.7 Consensus size: 43
24356182 CTGGCACGTA
* *
24356192 AGTGCATCATTGGATAAA-TCGAAGAAAATATATTGGCACACAT
1 AGTGCATCATCGGATAAACT-GAAGAAAATATATTGGCACACAC
24356235 AGTGCATCATCGGATAAACTGAAGAAAATATATTGGCACACAC
1 AGTGCATCATCGGATAAACTGAAGAAAATATATTGGCACACAC
* * *
24356278 AGTGCATCATCGGATGAAACTGAAGATACTATACTGGCACACAC
1 AGTGCATCATCGGAT-AAACTGAAGAAAATATATTGGCACACAC
**
24356322 AGTGCATCA-CTGGATAAACCAAAGAAAATA
1 AGTGCATCATC-GGATAAACTGAAGAAAATA
24356352 AGATATACCG
Statistics
Matches: 105, Mismatches: 9, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
43 66 0.63
44 39 0.37
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACTGAAGAAAATATATTGGCACACAC
Found at i:24356317 original size:87 final size:86
Alignment explanation
Indices: 24356192--24356351 Score: 216
Period size: 87 Copynumber: 1.8 Consensus size: 86
24356182 CTGGCACGTA
* * * **
24356192 AGTGCATCATTGGATAAATCGAAGAAAATATATTGGCACACATAGTGCATCA-TCGGATAAACTG
1 AGTGCATCATCGGATAAATCGAAGAAAATATACTGGCACACACAGTGCATCACT-GGATAAACCA
24356256 AAGAAAATATATTGGCACACAC
65 AAGAAAATATATTGGCACACAC
* *
24356278 AGTGCATCATCGGATGAAA-CTGAAGATACTATACTGGCACACACAGTGCATCACTGGATAAACC
1 AGTGCATCATCGGAT-AAATC-GAAGAAAATATACTGGCACACACAGTGCATCACTGGATAAACC
24356342 AAAGAAAATA
64 AAAGAAAATA
24356352 AGATATACCG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
86 15 0.23
87 48 0.75
88 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (86 bp):
AGTGCATCATCGGATAAATCGAAGAAAATATACTGGCACACACAGTGCATCACTGGATAAACCAA
AGAAAATATATTGGCACACAC
Found at i:24356414 original size:43 final size:43
Alignment explanation
Indices: 24356353--24356446 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
24356343 AAGAAAATAA
* * *
24356353 GATATACCGAAGCAAATATACTAGCACACATAGTGCATCATCG
1 GATATACCAAAGCAAATATACTAACACACACAGTGCATCATCG
* *
24356396 GATATACCAAAGGAAATATACTAACACATACAGTGCATCATCG
1 GATATACCAAAGCAAATATACTAACACACACAGTGCATCATCG
24356439 GATATACC
1 GATATACC
24356447 GAAGTATAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.21
Consensus pattern (43 bp):
GATATACCAAAGCAAATATACTAACACACACAGTGCATCATCG
Found at i:24359662 original size:38 final size:37
Alignment explanation
Indices: 24359607--24359684 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 37
24359597 GTTAACTTTC
24359607 AATACACCGGCATAAAGCCTGCTAGGCACAAAGCCCG
1 AATACACCGGCATAAAGCCTGCTAGGCACAAAGCCCG
* *
24359644 AATATCACCGGCATAAAGCTTGCTAGGCACAGAGCCCG
1 AATA-CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG
24359682 AAT
1 AAT
24359685 GACGTTACGT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 4 0.11
38 34 0.89
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.14
Consensus pattern (37 bp):
AATACACCGGCATAAAGCCTGCTAGGCACAAAGCCCG
Found at i:24378149 original size:27 final size:27
Alignment explanation
Indices: 24378119--24378296 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
24378109 ATATTGAGTC
* **
24378119 CGCACACTCAGTGCTTTATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
24378146 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
24378173 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
24378201 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
24378228 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
24378255 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
24378282 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24378297 GTACAATTCA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24378258 original size:82 final size:81
Alignment explanation
Indices: 24378140--24378295 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24378130 TGCTTTATAA
* *
24378140 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24378205 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24378222 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24378286 CACTTAGTGC
65 CACTTAGTGC
24378296 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24378308 original size:82 final size:83
Alignment explanation
Indices: 24378119--24378308 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 83
24378109 ATATTGAGTC
* * * * *
24378119 CGCACACTCAGTGCTTTATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
24378183 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
24378201 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
24378262 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
24378282 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
24378309 CCCGCGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:24382073 original size:9 final size:9
Alignment explanation
Indices: 24382059--24382084 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24382049 ACTAAGTGTT
24382059 TATATATTA
1 TATATATTA
24382068 TATATATTA
1 TATATATTA
24382077 TATATATT
1 TATATATT
24382085 TTTAGAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TATATATTA
Found at i:24382795 original size:14 final size:15
Alignment explanation
Indices: 24382768--24382799 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
24382758 TTGCACGATG
24382768 TTTCTTCTTCCTCTT
1 TTTCTTCTTCCTCTT
24382783 TTTCTTC-TCCTCTT
1 TTTCTTCTTCCTCTT
24382797 TTT
1 TTT
24382800 ATTTTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCTTCTTCCTCTT
Found at i:24383136 original size:18 final size:21
Alignment explanation
Indices: 24383104--24383154 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
24383094 TTATTTTCAG
*
24383104 CAACTT-CTACTTCTTCAGCAA
1 CAACTTCCT-CTTCTGCAGCAA
24383125 CAACTTCCTCTTCTGCAGCAA
1 CAACTTCCTCTTCTGCAGCAA
24383146 CAACTTCCT
1 CAACTTCCT
24383155 TCTCAACAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.25, C:0.37, G:0.06, T:0.31
Consensus pattern (21 bp):
CAACTTCCTCTTCTGCAGCAA
Found at i:24383164 original size:18 final size:21
Alignment explanation
Indices: 24383104--24383165 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
24383094 TTATTTTCAG
* *
24383104 CAACTT-CTACTTCTTCAGCAA
1 CAACTTCCT-CTTCTGCAACAA
*
24383125 CAACTTCCTCTTCTGCAGCAA
1 CAACTTCCTCTTCTGCAACAA
24383146 CAACTT-C-CTTCT-CAACAA
1 CAACTTCCTCTTCTGCAACAA
24383164 CA
1 CA
24383166 GTGTCCTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 7 0.18
19 5 0.13
20 1 0.03
21 23 0.61
22 2 0.05
ACGTcount: A:0.29, C:0.37, G:0.05, T:0.29
Consensus pattern (21 bp):
CAACTTCCTCTTCTGCAACAA
Found at i:24387064 original size:34 final size:34
Alignment explanation
Indices: 24387017--24387206 Score: 152
Period size: 34 Copynumber: 5.6 Consensus size: 34
24387007 TTTGCTATTC
* * **
24387017 TATTTATTTGTTATAAATATATTAATTGCTACCG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
* * * **
24387051 CATTGATCCGTTATAAGCATATTATTTGCTATTG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
*
24387085 TATTGATTTGTTATAAGCATATTAATTG-TCACCG
1 TATTGATTCGTTATAAGCATATTAATTGCT-ACCG
* * *
24387119 TAATGATTCATTATAAGCATATTATTTGCTACCG
1 TATTGATTCGTTATAAGCATATTAATTGCTACCG
** * * * *
24387153 TATCAAGTT-GTTATAAGGAAATTAATTACTACCA
1 TATTGA-TTCGTTATAAGCATATTAATTGCTACCG
*
24387187 TATTGA-TCTATTATAAGCAT
1 TATTGATTC-GTTATAAGCAT
24387207 GTCATATTGC
Statistics
Matches: 118, Mismatches: 33, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
32 1 0.01
33 1 0.01
34 113 0.96
35 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (34 bp):
TATTGATTCGTTATAAGCATATTAATTGCTACCG
Found at i:24387107 original size:68 final size:68
Alignment explanation
Indices: 24387007--24387206 Score: 222
Period size: 68 Copynumber: 2.9 Consensus size: 68
24386997 AAGCATGTCT
* * ** * *
24387007 TTTGCTATTCTATTTATTTGTTATAAATATATTAATTGCTACCGCATTGATCCGTTATAAGCATA
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCATA
24387072 TTA
66 TTA
* * *
24387075 TTTGCTATTGTATTGATTTGTTATAAGCATATTAATTG-TCACCGTAATGATTCATTATAAGCAT
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCT-ACCGTATTGATCCATTATAAGCAT
24387139 ATTA
65 ATTA
** * * * * * * *
24387143 TTTGCTACCGTATCAAGTTGTTATAAGGAAATTAATTACTACCATATTGATCTATTATAAGCAT
1 TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCAT
24387207 GTCATATTGC
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
67 1 0.01
68 108 0.98
69 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (68 bp):
TTTGCTATTGTATTAATTTGTTATAAGCATATTAATTGCTACCGTATTGATCCATTATAAGCATA
TTA
Found at i:24397027 original size:104 final size:104
Alignment explanation
Indices: 24396847--24397045 Score: 371
Period size: 104 Copynumber: 1.9 Consensus size: 104
24396837 GGCAACGTAC
* *
24396847 CAAAATAGTTTTGACTTTTAGAACCACTTTGATTATCGAAACTATGATAGTTGATTGACATTAAC
1 CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTAATTGACATTAAC
24396912 TGACCCTGATCACCAGGTAATCCAAAAAAAGAAATTAAT
66 TGACCCTGATCACCAGGTAATCCAAAAAAAGAAATTAAT
*
24396951 CAAAATAGTTTTTACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTAATTGACATTAAC
1 CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTAATTGACATTAAC
24397016 TGACCCTGATCACCAGGTAATCCAAAAAAA
66 TGACCCTGATCACCAGGTAATCCAAAAAAA
24397046 ATTTAATCAA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 92 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (104 bp):
CAAAATAGTTTTGACTTTCAGAACCACTTTGATTATCGAAACTATGATAGTTAATTGACATTAAC
TGACCCTGATCACCAGGTAATCCAAAAAAAGAAATTAAT
Found at i:24399077 original size:19 final size:18
Alignment explanation
Indices: 24399045--24399084 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
24399035 GTATATATTT
*
24399045 TAAATTTATTTAGGTAAA
1 TAAATTTATATAGGTAAA
*
24399063 TAAATCTTATATAGGTAGA
1 TAAAT-TTATATAGGTAAA
24399082 TAA
1 TAA
24399085 GTTTTATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (18 bp):
TAAATTTATATAGGTAAA
Found at i:24399091 original size:19 final size:19
Alignment explanation
Indices: 24399045--24399091 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
24399035 GTATATATTT
*
24399045 TAAA-TTTATTTAGGTAAA
1 TAAATTTTATATAGGTAAA
* *
24399063 TAAATCTTATATAGGTAGA
1 TAAATTTTATATAGGTAAA
*
24399082 TAAGTTTTAT
1 TAAATTTTAT
24399092 TCATATTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (19 bp):
TAAATTTTATATAGGTAAA
Found at i:24399196 original size:42 final size:42
Alignment explanation
Indices: 24399115--24399198 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
24399105 ATATTTTATT
*
24399115 TTATCTTTTAGTAGTTTATTAGAATAAGGAAATTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAAAATAAGGAAATTATTTTCCC
*
24399157 TTATGTTTTAGTAGTTTATTAAAATAAGGAAATTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAAAATAAGGAAATTATTTTCCC
24399199 AAGTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAAAATAAGGAAATTATTTTCCC
Found at i:24409542 original size:16 final size:17
Alignment explanation
Indices: 24409505--24409542 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
24409495 ATTAGGAGAC
* *
24409505 CTTTAATTAAAAGTCTT
1 CTTTAATTAAAAATCAT
24409522 CTTTAATTAAAAAT-AT
1 CTTTAATTAAAAATCAT
24409538 CTTTA
1 CTTTA
24409543 TGGTATTACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (17 bp):
CTTTAATTAAAAATCAT
Found at i:24416554 original size:17 final size:17
Alignment explanation
Indices: 24416515--24416551 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
24416505 TTTTGGCTTT
*
24416515 TGGAAAAATGCTTTCAT
1 TGGAAAAATGCTTTCAA
24416532 TGGAAAAATGCTTTTCAA
1 TGGAAAAATGC-TTTCAA
24416550 TG
1 TG
24416552 AAATTACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (17 bp):
TGGAAAAATGCTTTCAA
Found at i:24417242 original size:27 final size:28
Alignment explanation
Indices: 24417212--24417268 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
24417202 TTCTTTAATC
24417212 TCTTT-CCAACCGCTAC-CTTCTTTTTCT
1 TCTTTCCCAACCGCTACTC-TCTTTTTCT
*
24417239 TCTTTGCCCAGCCGCTACTCTCTTTTTCT
1 TCTTT-CCCAACCGCTACTCTCTTTTTCT
24417268 T
1 T
24417269 TTCTATTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 5 0.19
29 20 0.77
30 1 0.04
ACGTcount: A:0.09, C:0.37, G:0.07, T:0.47
Consensus pattern (28 bp):
TCTTTCCCAACCGCTACTCTCTTTTTCT
Found at i:24417328 original size:30 final size:31
Alignment explanation
Indices: 24417292--24417360 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
24417282 TGGTTTTTTA
*
24417292 TTTCTTCTCTTT-TTGTATCACGACT-TTCTT
1 TTTCTTCTCTTTATT-TATCACAACTGTTCTT
* *
24417322 TTTCTTCTCTTTATTTATCACAATTGTTGTT
1 TTTCTTCTCTTTATTTATCACAACTGTTCTT
24417353 TTTCTTCT
1 TTTCTTCT
24417361 TCCTCTCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 20 0.59
31 14 0.41
ACGTcount: A:0.12, C:0.20, G:0.06, T:0.62
Consensus pattern (31 bp):
TTTCTTCTCTTTATTTATCACAACTGTTCTT
Found at i:24420060 original size:17 final size:18
Alignment explanation
Indices: 24420027--24420060 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24420017 TAAGAGATGG
24420027 GCTTTTACTTGGAAAAGT
1 GCTTTTACTTGGAAAAGT
*
24420045 GCTTTT-CTTTGAAAAG
1 GCTTTTACTTGGAAAAG
24420061 CAATGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (18 bp):
GCTTTTACTTGGAAAAGT
Found at i:24420312 original size:17 final size:17
Alignment explanation
Indices: 24420287--24420319 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24420277 ATTTTTGTTT
*
24420287 GTCTGGGATTGATTTTC
1 GTCTAGGATTGATTTTC
24420304 GTCTAGGATTGATTTT
1 GTCTAGGATTGATTTT
24420320 TTTTGTTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.09, G:0.27, T:0.48
Consensus pattern (17 bp):
GTCTAGGATTGATTTTC
Found at i:24423301 original size:26 final size:26
Alignment explanation
Indices: 24423251--24423301 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24423241 ACACTCAAAT
* *
24423251 TTTTCAAAAGCACTTTTCCACAGCAC
1 TTTTCAAAAGCACTTTTCAAAAGCAC
24423277 TTTTCAAAA-CTACTTTTCAAAAGCA
1 TTTTCAAAAGC-ACTTTTCAAAAGCA
24423302 ATGAAGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTTTCAAAAGCACTTTTCAAAAGCAC
Found at i:24444541 original size:25 final size:25
Alignment explanation
Indices: 24444512--24444563 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
24444502 TTCATTTATA
*
24444512 TTTCAC-CAGTCCCGTCTATTTAAGT
1 TTTCACAC-GTCCCGTATATTTAAGT
*
24444537 TTTCACACGTCCCGTATGTTTAAGT
1 TTTCACACGTCCCGTATATTTAAGT
24444562 TT
1 TT
24444564 ACTGATTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.42
Consensus pattern (25 bp):
TTTCACACGTCCCGTATATTTAAGT
Found at i:24446090 original size:18 final size:18
Alignment explanation
Indices: 24446069--24446222 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
24446059 ATATTAAGAA
24446069 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
24446087 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
24446102 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
24446117 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
24446136 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
24446151 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
24446170 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
24446189 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
24446207 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
24446223 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:24446141 original size:120 final size:120
Alignment explanation
Indices: 24446004--24446491 Score: 859
Period size: 120 Copynumber: 4.1 Consensus size: 120
24445994 ATTATTAATC
*
24446004 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
24446069 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
*
24446124 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
24446189 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
*
24446244 TATATTATATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
24446309 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
* * * *
24446364 TATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
24446429 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
24446484 TATGATTA
1 TAT-ATTA
24446492 AATTATTTAT
Statistics
Matches: 355, Mismatches: 12, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
120 352 0.99
121 3 0.01
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
Found at i:24446456 original size:18 final size:17
Alignment explanation
Indices: 24446428--24446462 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24446418 ATTATTAAGA
*
24446428 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24446445 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24446463 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24446704 original size:45 final size:45
Alignment explanation
Indices: 24446621--24446760 Score: 212
Period size: 45 Copynumber: 3.1 Consensus size: 45
24446611 ATTACACCTT
* * *
24446621 CATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACA-ATTGAATTGCTATTACGCCTCTATTC
*
24446665 CATTACATTCAACCAAATAATTGAATTGCTATTACGCCTCTATTC
1 CATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTATTC
*
24446710 CATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTAATC
1 CATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTATTC
24446755 CATTAC
1 CATTAC
24446761 GCCTCTATTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
43 1 0.01
44 20 0.23
45 67 0.76
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (45 bp):
CATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTATTC
Found at i:24446761 original size:16 final size:16
Alignment explanation
Indices: 24446740--24446775 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
24446730 TTGAATTGCT
24446740 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
*
24446756 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
24446772 ATTA
1 ATTA
24446776 TAACGAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.33, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:24449211 original size:9 final size:9
Alignment explanation
Indices: 24449197--24449233 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
24449187 TATAGTTTAA
24449197 TATTCGAAT
1 TATTCGAAT
24449206 TATTCGAAT
1 TATTCGAAT
*
24449215 TATTCGAGT
1 TATTCGAAT
24449224 TATTCGAAT
1 TATTCGAAT
24449233 T
1 T
24449234 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24457489 original size:13 final size:13
Alignment explanation
Indices: 24457471--24457501 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
24457461 ATATCCAAAC
*
24457471 TTACCTAATTAAT
1 TTACCTAATTAAG
24457484 TTACCTAATTAAG
1 TTACCTAATTAAG
24457497 TTACC
1 TTACC
24457502 AAAGTTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (13 bp):
TTACCTAATTAAG
Found at i:24458095 original size:19 final size:21
Alignment explanation
Indices: 24458068--24458148 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 21
24458058 CGAATAAGTC
*
24458068 AACAGAAGCTCG-AAG-GCTA
1 AACAAAAGCTCGTAAGAGCTA
* *
24458087 AACAAAAGCTTGTAAGAGCTG
1 AACAAAAGCTCGTAAGAGCTA
* *
24458108 AACAAAAGCTCATAAGAGCTT
1 AACAAAAGCTCGTAAGAGCTA
* *
24458129 AACAGAAGCTTGTAAGAGCT
1 AACAAAAGCTCGTAAGAGCT
24458149 GATCCATCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
19 10 0.20
20 3 0.06
21 38 0.75
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTA
Found at i:24458112 original size:21 final size:21
Alignment explanation
Indices: 24458087--24458150 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
24458077 TCGAAGGCTA
24458087 AACAAAAGCTTGTAAGAGCTG
1 AACAAAAGCTTGTAAGAGCTG
** *
24458108 AACAAAAGCTCATAAGAGCTT
1 AACAAAAGCTTGTAAGAGCTG
*
24458129 AACAGAAGCTTGTAAGAGCTG
1 AACAAAAGCTTGTAAGAGCTG
24458150 A
1 A
24458151 TCCATCCAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
AACAAAAGCTTGTAAGAGCTG
Found at i:24463930 original size:35 final size:35
Alignment explanation
Indices: 24463882--24463965 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
24463872 CTATGTTTGG
*
24463882 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATTGA
1 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
* *
24463917 CGTGTTTCTGTTGGATTAGCTCTTATGAGCATCGA
1 CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
*
24463952 CTTGTTAT-GGTTGG
1 CGTGTT-TCGGTTGG
24463966 GCTGACAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 42 0.98
36 1 0.02
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.40
Consensus pattern (35 bp):
CGTGTTTCGGTTGGACTAGCTCTTATGAGCATCGA
Found at i:24472222 original size:10 final size:10
Alignment explanation
Indices: 24472184--24472224 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
24472174 CCTACAGCCC
24472184 AAATTTTTC-
1 AAATTTTTCT
24472193 AAATTTTTCCT
1 AAATTTTT-CT
24472204 AAA-TTTTCT
1 AAATTTTTCT
*
24472213 AAATATTTCT
1 AAATTTTTCT
24472223 AA
1 AA
24472225 TTTAGTCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 13 0.46
10 12 0.43
11 3 0.11
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (10 bp):
AAATTTTTCT
Found at i:24478018 original size:14 final size:16
Alignment explanation
Indices: 24477984--24478024 Score: 61
Period size: 14 Copynumber: 2.8 Consensus size: 16
24477974 TGTTTAGTGC
24477984 TTAGGG-TTTATGAGT
1 TTAGGGTTTTATGAGT
24477999 TTAGGGTTTTATG-G-
1 TTAGGGTTTTATGAGT
24478013 TTAGGGTTTTAT
1 TTAGGGTTTTAT
24478025 TAAAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 12 0.48
15 7 0.28
16 6 0.24
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (16 bp):
TTAGGGTTTTATGAGT
Found at i:24478425 original size:125 final size:124
Alignment explanation
Indices: 24478231--24478613 Score: 491
Period size: 125 Copynumber: 3.1 Consensus size: 124
24478221 TTTTTTTGTT
* * * * *
24478231 CAGTAGTTTCTAAAAAATAAGTTTGAGAAGATGATTCTAAAAATATAGTGTCAAAAATGCTTCAA
1 CAGTAGTTTCTAAAAAATAATTTTGAGAAGACGGTTCTGAAAATATAGTGTCAAAAACGCTTCAA
* * * *
24478296 GTAGGATGCACTGTCAGCAAGAGTACTAAAAAAAACTCTCACGTGGACACTCTTTTTCTA
66 GTAGGATGCACTGTCAGCAAAAGTACT-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
*
24478356 CAGTAGTTTCTAAAAAAATAATTTTAAGAAGACGGTTCTGAAAATATAGTGT-AAAAACGCTT-A
1 CAGTAGTTTCT-AAAAAATAATTTTGAGAAGACGGTTCTGAAAATATAGTGTCAAAAACGCTTCA
* * ***
24478419 ATGTAGGATGCACTGTTAGCAAAAGTACTGAAAAAGCTCCCACAAAGACGCTCTTTTTCTA
65 A-GTAGGATGCACTGTCAGCAAAAGTACTAAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
* * * *
24478480 CAATAGTTTCTGAAAAAATAGTTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAACGTTTCA
1 CAGTAGTTTCT-AAAAAATAATTTTGAGAAGACGGTTCTGAAAATATAGTGTCAAAAACGCTTCA
** * * *
24478545 ACCAAGATGCACTATCAGCAAAAGTACTGAAAAAAGTTCCCACGTGGACGCTCTTTTTCTA
65 AGTAGGATGCACTGTCAGCAAAAGTACT-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
24478606 CAGTAGTT
1 CAGTAGTT
24478614 CCTGCTTGGC
Statistics
Matches: 221, Mismatches: 32, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
124 74 0.33
125 76 0.34
126 71 0.32
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (124 bp):
CAGTAGTTTCTAAAAAATAATTTTGAGAAGACGGTTCTGAAAATATAGTGTCAAAAACGCTTCAA
GTAGGATGCACTGTCAGCAAAAGTACTAAAAAAGCTCCCACGTGGACGCTCTTTTTCTA
Found at i:24482168 original size:18 final size:18
Alignment explanation
Indices: 24482145--24482180 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24482135 AAAAGAAAAT
**
24482145 ATATAAGGGTTAGGATAC
1 ATATAAGGACTAGGATAC
24482163 ATATAAGGACTAGGATAC
1 ATATAAGGACTAGGATAC
24482181 GTATCTGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (18 bp):
ATATAAGGACTAGGATAC
Found at i:24483755 original size:36 final size:32
Alignment explanation
Indices: 24483687--24483751 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
24483677 CCTCGGCCTC
24483687 ACACGAAAACATGACACTGACTGAATTGATAG
1 ACACGAAAACATGACACTGACTGAATTGATAG
*
24483719 ACACGAAAACATGACACTGACTGAAGTGATAG
1 ACACGAAAACATGACACTGACTGAATTGATAG
24483751 A
1 A
24483752 TAGAACCATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (32 bp):
ACACGAAAACATGACACTGACTGAATTGATAG
Found at i:24488688 original size:61 final size:61
Alignment explanation
Indices: 24488574--24488725 Score: 164
Period size: 61 Copynumber: 2.5 Consensus size: 61
24488564 TAAAAGTGAT
* * * * * *
24488574 GCCTTTGTGGATGTTCTATGTTAAATGTGAGCCATAGTGGCTGGATATGTTATACGTGAAA
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCATAGTGGCTGAACATATTATACGCGAAA
* * * *
24488635 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCCTAAG-GGCTGAACCTATTATATGCGGAA
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCAT-AGTGGCTGAACATATTATACGCGAAA
* * *
24488696 GCCTTTGTGGCTATTCTCTATTACA-GTGAG
1 GCCTTTGTGGATGTTCTCTGTTACATGTGAG
24488726 TCTTTGTGGC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
60 5 0.06
61 70 0.91
62 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (61 bp):
GCCTTTGTGGATGTTCTCTGTTACATGTGAGCCATAGTGGCTGAACATATTATACGCGAAA
Found at i:24488856 original size:29 final size:29
Alignment explanation
Indices: 24488784--24488862 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
24488774 TGTGTATTTA
* * *
24488784 GATGCCTTCGTGGCTATCTAATGATGTATG
1 GATGCCTTTGTGGCTATCTAATCAAG-ATG
* *
24488814 AATGCCTCTGTGGCTATCTAAGTCAAG-TG
1 GATGCCTTTGTGGCTATCTAA-TCAAGATG
24488843 GATGCCTTTGTGGCTATCTA
1 GATGCCTTTGTGGCTATCTA
24488863 TTGATCAAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 20 0.49
30 18 0.44
31 3 0.07
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.35
Consensus pattern (29 bp):
GATGCCTTTGTGGCTATCTAATCAAGATG
Found at i:24491008 original size:10 final size:10
Alignment explanation
Indices: 24490989--24491019 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24490979 CTAAATTTTA
*
24490989 TTTATTTTAT
1 TTTATGTTAT
24490999 TTTATGTTAT
1 TTTATGTTAT
24491009 TTTATGTTAT
1 TTTATGTTAT
24491019 T
1 T
24491020 ATTCTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (10 bp):
TTTATGTTAT
Found at i:24491010 original size:15 final size:14
Alignment explanation
Indices: 24490983--24491019 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
24490973 TATCTCCTAA
24490983 ATTTTATTTATTTT
1 ATTTTATTTATTTT
24490997 ATTTTATGTTATTTT
1 ATTTTAT-TTATTTT
*
24491012 ATGTTATT
1 ATTTTATT
24491020 ATTCTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:24491462 original size:36 final size:36
Alignment explanation
Indices: 24491415--24491485 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
24491405 GGTTTAGTGT
24491415 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
1 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
24491451 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAAC
1 ATGACTTGCAGTAGGGGTACACCTATTGTAGCAAC
24491486 CACAGATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (36 bp):
ATGACTTGCAGTAGGGGTACACCTATTGTAGCAACA
Found at i:24493636 original size:248 final size:248
Alignment explanation
Indices: 24493198--24493695 Score: 960
Period size: 248 Copynumber: 2.0 Consensus size: 248
24493188 GTAAGAATAT
*
24493198 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTTTTGTAATGTGATTATTTCGAGACACGTACCTC
1 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACACGTACCTC
24493263 AAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
66 AAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
24493328 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
131 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
*
24493393 AGGGGATCTTAGAACTACTCAAATAACATTACAGTTGGCTGACAGGTCTTTAG
196 AGGGGATCTTAGAACTACTCAAACAACATTACAGTTGGCTGACAGGTCTTTAG
*
24493446 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACAGGTACCTC
1 TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACACGTACCTC
*
24493511 GAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
66 AAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
24493576 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
131 CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
24493641 AGGGGATCTTAGAACTACTCAAACAACATTACAGTTGGCTGACAGGTCTTTAG
196 AGGGGATCTTAGAACTACTCAAACAACATTACAGTTGGCTGACAGGTCTTTAG
24493694 TA
1 TA
24493696 CATCTGAAAG
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
248 246 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (248 bp):
TAAGGTAGGCAAAAAAGTTAACTCAAGTGCTTCTTGTAATGTGATTATTTCGAGACACGTACCTC
AAAAACTGAAAGACCCGAGGAGCTTTACTATTCCCATAGATATAGAAAACATCTATTTAAATAGA
CCTCTATGTGATTTAGTAGCTAGTATTAATTTAATGCCTCTATCAATTTTTGAAAAACTCGAGCT
AGGGGATCTTAGAACTACTCAAACAACATTACAGTTGGCTGACAGGTCTTTAG
Found at i:24507545 original size:24 final size:24
Alignment explanation
Indices: 24507518--24507568 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
24507508 CAGCTCGTAA
**
24507518 GAGCATCCCGCTATTAGCTCTCAT
1 GAGCATCCCAATATTAGCTCTCAT
* *
24507542 GAGCATCCCAATATTTGCTCTCTT
1 GAGCATCCCAATATTAGCTCTCAT
24507566 GAG
1 GAG
24507569 TTACCCGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (24 bp):
GAGCATCCCAATATTAGCTCTCAT
Found at i:24507660 original size:25 final size:25
Alignment explanation
Indices: 24507631--24507697 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
24507621 CTTCCCAACT
24507631 AATGGCTCTCTAGAGCTT-CTCGATA
1 AATGGCTCTCTAGAGCTTCCT-GATA
* *
24507656 TATGGCTCGC-ACGAGCTTCCTGATA
1 AATGGCTCTCTA-GAGCTTCCTGATA
* *
24507681 AATGACTCTCTGGAGCT
1 AATGGCTCTCTAGAGCT
24507698 ACCCGTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
24 1 0.03
25 30 0.91
26 2 0.06
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (25 bp):
AATGGCTCTCTAGAGCTTCCTGATA
Found at i:24512849 original size:27 final size:27
Alignment explanation
Indices: 24512809--24513117 Score: 330
Period size: 27 Copynumber: 11.4 Consensus size: 27
24512799 TGCGATTCGT
* *
24512809 GGGTAAAATGACCGATATACCCCGGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* * *
24512836 GTGTAAAATGACCGAATTACCCCCAAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* *
24512863 GGGTAAAATGATCGAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
** *
24512890 GGGTAAAATGGTCGAATTACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* *
24512917 GGGTAAAATGACCGAGATACCCCCGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
* * ** *
24512944 GGGTAAAATGACTGAAATAACCTTGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
* * * *
24512971 GGATAAAATAACCGAAATACTCCTGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
** * *
24512998 GGGTAAAATGATTGAAATACCCGCGAT
1 GGGTAAAATGACCGAAATACCCCCGAA
* *
24513025 GGGTAAAATGATCGAATTACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
* * *
24513052 GGGTAAAATGATCTAAATACCCCTGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
*
24513079 GGGTAAAATGACCGAAATAGCCCCGAA
1 GGGTAAAATGACCGAAATACCCCCGAA
*
24513106 GGGTAAAGTGAC
1 GGGTAAAATGAC
24513118 TGGAATAACC
Statistics
Matches: 232, Mismatches: 50, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 232 1.00
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCCGAA
Found at i:24513124 original size:27 final size:26
Alignment explanation
Indices: 24512809--24513192 Score: 276
Period size: 27 Copynumber: 14.2 Consensus size: 26
24512799 TGCGATTCGT
* *
24512809 GGGTAAAATGACCGATATACCCCGGAA
1 GGGTAAAATGACTGAAATACCCC-GAA
* * * *
24512836 GTGTAAAATGACCGAATTACCCCCAAA
1 GGGTAAAATGACTGAAATA-CCCCGAA
24512863 GGGTAAAATGA-TCGAAATACCCTCGAA
1 GGGTAAAATGACT-GAAATACCC-CGAA
* *
24512890 GGGTAAAATG-GTCGAATTACCCCCGAA
1 GGGTAAAATGACT-GAAATA-CCCCGAA
* * *
24512917 GGGTAAAATGACCGAGATACCCCCGAT
1 GGGTAAAATGACTGAAATA-CCCCGAA
** *
24512944 GGGTAAAATGACTGAAATAACCTTGAT
1 GGGTAAAATGACTGAAAT-ACCCCGAA
* * * *
24512971 GGATAAAATAACCGAAATACTCCTGAA
1 GGGTAAAATGACTGAAATAC-CCCGAA
* *
24512998 GGGTAAAATGATTGAAATACCCGCGAT
1 GGGTAAAATGACTGAAATACCC-CGAA
*
24513025 GGGTAAAATGA-TCGAATTACCCCCGAA
1 GGGTAAAATGACT-GAAATA-CCCCGAA
24513052 GGGTAAAATGATCT-AAATACCCCTGAA
1 GGGTAAAATGA-CTGAAATACCCC-GAA
*
24513079 GGGTAAAATGACCGAAATAGCCCCGAA
1 GGGTAAAATGACTGAAATA-CCCCGAA
* * * *
24513106 GGGTAAAGTGACTGGAATAACCCTATA
1 GGGTAAAATGACTGAAATACCCCGA-A
* *
24513133 GAGG-AGAATGATTGAAATACCTCC-ATA
1 G-GGTAAAATGACTGAAATACC-CCGA-A
* *
24513160 GGATAAAATGACTGAAATACCCCCATA
1 GGGTAAAATGACTGAAATACCCCGA-A
24513187 GGGTAA
1 GGGTAA
24513193 TGATTGTTAT
Statistics
Matches: 289, Mismatches: 47, Indels: 42
0.76 0.12 0.11
Matches are distributed among these distances:
26 20 0.07
27 249 0.86
28 19 0.07
29 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (26 bp):
GGGTAAAATGACTGAAATACCCCGAA
Found at i:24513143 original size:81 final size:80
Alignment explanation
Indices: 24512809--24513192 Score: 309
Period size: 81 Copynumber: 4.7 Consensus size: 80
24512799 TGCGATTCGT
* * * * * *
24512809 GGGTAAAATGACCGATATACCCCGGAAGTGTAAAATGACCGAATTACCCCCAAAGGGTAAAATGA
1 GGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTAAAATGA
*
24512874 TCGAA-ATACCCTCGAA
65 TCGAATACACCCT-GAA
* * * * *
24512890 GGGTAAAATGGTCGAATTACCCCCGAAGGGTAAAATGACCGAGATACCCCCGATGGGTAAAATGA
1 GGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTAAAATGA
* *
24512955 -CTGAAATA-ACCTTGAT
65 TC-G-AATACACCCTGAA
* * * * ** *
24512971 GGATAAAATAACCGAAATACTCCTGAAGGGTAAAATGATTGAAATACCCGCGATGGGTAAAATGA
1 GGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCC-CGAAGGGTAAAATGA
*
24513036 TCGAATTAC-CCCCGAA
65 TCGAA-TACACCCTGAA
* *
24513052 GGGTAAAATGATCTAAATACCCCTGAAGGGTAAAATGACCGAAATAGCCCCGAAGGGTAAAGTGA
1 GGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATA-CCCCGAAGGGTAAAATGA
*
24513117 CTGGAATA-ACCCT-ATA
65 -TCGAATACACCCTGA-A
* * * * *
24513133 GAGG-AGAATGATTGAAATACCTCC--ATAGGATAAAATGACTGAAATACCCCCATAGGGTAA
1 G-GGTAAAATGATCGAAATACC-CCTGA-AGGGTAAAATGACCGAAATACCCCGA-AGGGTAA
24513193 TGATTGTTAT
Statistics
Matches: 246, Mismatches: 42, Indels: 30
0.77 0.13 0.09
Matches are distributed among these distances:
80 13 0.05
81 214 0.87
82 18 0.07
83 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (80 bp):
GGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCGAAGGGTAAAATGAT
CGAATACACCCTGAA
Found at i:24513518 original size:21 final size:22
Alignment explanation
Indices: 24513492--24513547 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
24513482 TATCCCCACA
24513492 TGGTGTGTTGG-AGGTACGGAG
1 TGGTGTGTTGGCAGGTACGGAG
* **
24513513 TGGTGTGTTGGCTGGGTTGGGAG
1 TGGTGTGTTGGC-AGGTACGGAG
24513536 TGGTGTGTTGGC
1 TGGTGTGTTGGC
24513548 TGGGTTGGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 11 0.37
23 19 0.63
ACGTcount: A:0.07, C:0.05, G:0.54, T:0.34
Consensus pattern (22 bp):
TGGTGTGTTGGCAGGTACGGAG
Found at i:24513561 original size:28 final size:23
Alignment explanation
Indices: 24513509--24513557 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
24513499 TTGGAGGTAC
24513509 GGAGTGGTGTGTTGGCTGGGTTG
1 GGAGTGGTGTGTTGGCTGGGTTG
24513532 GGAGTGGTGTGTTGGCTGGGTTG
1 GGAGTGGTGTGTTGGCTGGGTTG
24513555 GGA
1 GGA
24513558 TGGGTTGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.06, C:0.04, G:0.57, T:0.33
Consensus pattern (23 bp):
GGAGTGGTGTGTTGGCTGGGTTG
Found at i:24513624 original size:28 final size:28
Alignment explanation
Indices: 24513584--24513774 Score: 303
Period size: 28 Copynumber: 6.9 Consensus size: 28
24513574 ACTGTACCGA
24513584 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* *
24513612 TACTGTATTGGGCTAAGGCCTACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
24513640 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24513668 TACTGTATTGGGCTAAGG-CCACATTTT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24513695 TACTGTATTGGGCTAAGGGCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
24513723 TACTGTATTGGGCTAAGGCCCACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* * *
24513751 TACAGCATTAGGCTAAGGCCCACA
1 TACTGTATTGGGCTAAGGCCCACA
24513775 CTGTATTGTT
Statistics
Matches: 151, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 26 0.17
28 125 0.83
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:24513726 original size:83 final size:83
Alignment explanation
Indices: 24513584--24513770 Score: 295
Period size: 83 Copynumber: 2.2 Consensus size: 83
24513574 ACTGTACCGA
24513584 TACTGTATTGGGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATT
1 TACTGTATTGGGCTAAGG-CCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATT
*
24513649 GGGCTAAGGCCCACATTGT
65 GGGCTAAGGCCCACATTAT
* *
24513668 TACTGTATTGGGCTAAGGCCACATTTTTACTGTATTGGGCTAAGGGCC-ACATTGTTACTGTATT
1 TACTGTATTGGGCTAAGGCCACATTGTTACTGTATTGGGCTAA-GGCCTACATTATTACTGTATT
24513732 GGGCTAAGGCCCACATTAT
65 GGGCTAAGGCCCACATTAT
* * *
24513751 TACAGCATTAGGCTAAGGCC
1 TACTGTATTGGGCTAAGGCC
24513771 CACACTGTAT
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
83 74 0.77
84 22 0.23
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (83 bp):
TACTGTATTGGGCTAAGGCCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATTG
GGCTAAGGCCCACATTAT
Found at i:24513811 original size:83 final size:81
Alignment explanation
Indices: 24513594--24513797 Score: 203
Period size: 83 Copynumber: 2.4 Consensus size: 81
24513584 TACTGTATTG
* * * *
24513594 GGCTAAGGCCCACATTGTTACTGTATTGGGCTAA-GGCCTACATTATTACTGTATTGGGCTAAGG
1 GGCTAAGG-CCACATTTTTACTGAATAGGGCTAAGGGCC-ACA-T-GTACTGTATTGGGCTAAGG
* * * *
24513658 CCCACATTGTTACTGTATTG
62 CCCACATTATTACAGCATTA
* *
24513678 GGCTAAGGCCACATTTTTACTGTATTGGGCTAAGGGCCACATTGTTACTGTATTGGGCTAAGGCC
1 GGCTAAGGCCACATTTTTACTGAATAGGGCTAAGGGCCACA-TG-TACTGTATTGGGCTAAGGCC
24513743 CACATTATTACAGCATTA
64 CACATTATTACAGCATTA
24513761 GGCTAAGGCCCACACTGTATTGTTACTGAATAGGGCT
1 GGCTAAGG-CCACA---T-TT-TTACTGAATAGGGCT
24513798 CAGGCCCAGA
Statistics
Matches: 104, Mismatches: 8, Indels: 11
0.85 0.07 0.09
Matches are distributed among these distances:
83 71 0.68
84 17 0.16
87 1 0.01
88 2 0.02
89 13 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (81 bp):
GGCTAAGGCCACATTTTTACTGAATAGGGCTAAGGGCCACATGTACTGTATTGGGCTAAGGCCCA
CATTATTACAGCATTA
Found at i:24513811 original size:111 final size:108
Alignment explanation
Indices: 24513585--24513811 Score: 287
Period size: 111 Copynumber: 2.0 Consensus size: 108
24513575 CTGTACCGAT
* * * *
24513585 ACTGTATTGGGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCTACATTATTACTGTATTG
1 ACTGTATTGGGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCCACATTATTACAGCATTA
* * *
24513650 GGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCACATTTTT
66 GGCTAAGGCCCACATTGTTACTGAATAGGGCTAAGGCCACA---TG
*
24513696 ACTGTATTGGGCTAAGGGCCACATTGTTACTGTATTGGGCTAAGGCCCACATTATTACAGCATTA
1 ACTGTATTGGGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCCACATTATTACAGCATTA
*
24513761 GGCTAAGGCCCACACTGTATTGTTACTGAATAGGGCTCAGGCC-CA-G
66 GGCTAAGG-CC-CAC---ATTGTTACTGAATAGGGCTAAGGCCACATG
24513807 ACTGT
1 ACTGT
24513812 TACCGCATGT
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
111 73 0.72
112 2 0.02
113 3 0.03
115 2 0.02
116 22 0.22
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (108 bp):
ACTGTATTGGGCTAAGGCCCACATTGTTACTGTATTGGGCTAAGGCCCACATTATTACAGCATTA
GGCTAAGGCCCACATTGTTACTGAATAGGGCTAAGGCCACATG
Found at i:24514976 original size:19 final size:20
Alignment explanation
Indices: 24514934--24514976 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
24514924 TCATGCTTTT
* *
24514934 TATTCACATTTTCATATTCA
1 TATTCACATTCTCAAATTCA
24514954 -ATTCACATTCTCAAATT-A
1 TATTCACATTCTCAAATTCA
24514972 TATTC
1 TATTC
24514977 CACAATCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTCACATTCTCAAATTCA
Done.