Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 92 of 213
Found at i:25451444 original size:47 final size:47
Alignment explanation
Indices: 25451393--25451493 Score: 166
Period size: 47 Copynumber: 2.1 Consensus size: 47
25451383 AGTAACGTAG
**
25451393 ATAAACTGCCAATAATCAATATTGTGGACAAGCCACCAAAATCGCAA
1 ATAAACTGCCAATAATCAATATCATGGACAAGCCACCAAAATCGCAA
* *
25451440 ATAAACTGCCAATAATCAATATCATGGACAAGCCACCAAAATCGTAG
1 ATAAACTGCCAATAATCAATATCATGGACAAGCCACCAAAATCGCAA
25451487 ATAAACT
1 ATAAACT
25451494 TCCAGTAACT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.12, T:0.20
Consensus pattern (47 bp):
ATAAACTGCCAATAATCAATATCATGGACAAGCCACCAAAATCGCAA
Found at i:25461172 original size:28 final size:28
Alignment explanation
Indices: 25461140--25461287 Score: 86
Period size: 29 Copynumber: 5.2 Consensus size: 28
25461130 TAGAGCATTT
*
25461140 CCACAAGGGTTATCCTTTAATAGGTTCG
1 CCACAAGGGTTATCCTTTAATAGGTTCA
* * * **
25461168 CCACAAAGGCTTA-CCTTTTAAGAGATTTT
1 CCAC-AAGGGTTATCC-TTTAATAGGTTCA
* * *
25461197 CCACAAAGGTTGTCCTTTAATATGTTCA
1 CCACAAGGGTTATCCTTTAATAGGTTCA
* * * * *
25461225 CCACAAAGGCTTA-CCTTTCCAGAGTTTTA
1 CCAC-AAGGGTTATCCTTT-AATAGGTTCA
* *
25461254 CCACAAAGGCTTA-CCTTTAACAGGTTCA
1 CCAC-AAGGGTTATCCTTTAATAGGTTCA
25461282 CCACAA
1 CCACAA
25461288 AGGCTTACCT
Statistics
Matches: 90, Mismatches: 25, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
27 2 0.02
28 38 0.42
29 50 0.56
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (28 bp):
CCACAAGGGTTATCCTTTAATAGGTTCA
Found at i:25461176 original size:29 final size:28
Alignment explanation
Indices: 25461097--25461299 Score: 160
Period size: 28 Copynumber: 7.1 Consensus size: 28
25461087 AAAAGGTTTT
* * *
25461097 CTTTAAGAAGTTGACCACGAAGGCTTAC
1 CTTTAAGAGGTTCACCACAAAGGCTTAC
* * * *
25461125 CTTTCTAGAGCATT-TCCAC-AAGGGTTATC
1 CTTT-AAGAG-GTTCACCACAAAGGCTTA-C
* *
25461154 CTTTAATAGGTTCGCCACAAAGGCTTAC
1 CTTTAAGAGGTTCACCACAAAGGCTTAC
* ** *
25461182 CTTTTAAGAGATTTTCCACAAAGG-TTGTC
1 C-TTTAAGAGGTTCACCACAAAGGCTT-AC
* *
25461211 CTTTAATATGTTCACCACAAAGGCTTAC
1 CTTTAAGAGGTTCACCACAAAGGCTTAC
* * *
25461239 CTTTCCAGAGTTTTACCACAAAGGCTTAC
1 CTTT-AAGAGGTTCACCACAAAGGCTTAC
*
25461268 CTTTAACAGGTTCACCACAAAGGCTTAC
1 CTTTAAGAGGTTCACCACAAAGGCTTAC
25461296 CTTT
1 CTTT
25461300 CTAGATTTTT
Statistics
Matches: 136, Mismatches: 30, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
27 2 0.01
28 68 0.50
29 64 0.47
30 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (28 bp):
CTTTAAGAGGTTCACCACAAAGGCTTAC
Found at i:25461215 original size:114 final size:114
Alignment explanation
Indices: 25461074--25461299 Score: 305
Period size: 114 Copynumber: 2.0 Consensus size: 114
25461064 ATTTCCTTTC
* * * * *
25461074 AGAGATTTTTCACAAAAGGTTTTCTTTAAGAAGTTGACCACGAAGGCTTACCTTTCTAGAGCATT
1 AGAGATTTTCCACAAAAGGTTTCCTTTAAGAAGTTCACCACAAAGGCTTACCTTTCCAGAG-ATT
* * *
25461139 T-CCAC-AAGGGTTATCCTTTAATAGGTTCGCCACAAAGGCTTACCTTTTA
65 TACCACAAAGGCTTA-CCTTTAACAGGTTCACCACAAAGGCTTACCTTTTA
* * *
25461188 AGAGATTTTCCAC-AAAGGTTGTCCTTTAATATGTTCACCACAAAGGCTTACCTTTCCAGAGTTT
1 AGAGATTTTCCACAAAAGGTT-TCCTTTAAGAAGTTCACCACAAAGGCTTACCTTTCCAGAGATT
25461252 TACCACAAAGGCTTACCTTTAACAGGTTCACCACAAAGGCTTACCTTT
65 TACCACAAAGGCTTACCTTTAACAGGTTCACCACAAAGGCTTACCTTT
25461300 CTAGATTTTT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
113 10 0.10
114 81 0.83
115 7 0.07
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (114 bp):
AGAGATTTTCCACAAAAGGTTTCCTTTAAGAAGTTCACCACAAAGGCTTACCTTTCCAGAGATTT
ACCACAAAGGCTTACCTTTAACAGGTTCACCACAAAGGCTTACCTTTTA
Found at i:25461315 original size:57 final size:57
Alignment explanation
Indices: 25460997--25461322 Score: 267
Period size: 57 Copynumber: 5.7 Consensus size: 57
25460987 CTGGTGATTT
* * * ** * *
25460997 CCACAAAAGCTTTCCTATCTAGAG-TTAGCCACAAAGGCTTTCTTTTAACTGAGGTT-A
1 CCACAAAGGCTTACCTTTCTAGAGATTTTCCACAAAGGCTTACCTTTAA-T-AGGTTCA
** * * * ** * * *
25461054 CCATGAAGGAATTTCCTTTC-AGAGATTTTTCACAAAAGG-TTTTCTTTAAGAAGTTGA
1 CCACAAAGG-CTTACCTTTCTAGAGATTTTCCAC-AAAGGCTTACCTTTAATAGGTTCA
* * *
25461111 CCACGAAGGCTTACCTTTCTAGAGCA-TTTCCAC-AAGGGTTATCCTTTAATAGGTTCG
1 CCACAAAGGCTTACCTTTCTAGAG-ATTTTCCACAAAGGCTTA-CCTTTAATAGGTTCA
* *
25461168 CCACAAAGGCTTACCTTT-TAAGAGATTTTCCACAAAGG-TTGTCCTTTAATATGTTCA
1 CCACAAAGGCTTACCTTTCT-AGAGATTTTCCACAAAGGCTT-ACCTTTAATAGGTTCA
* *
25461225 CCACAAAGGCTTACCTTTCCAGAG-TTTTACCACAAAGGCTTACCTTTAACAGGTTCA
1 CCACAAAGGCTTACCTTTCTAGAGATTTT-CCACAAAGGCTTACCTTTAATAGGTTCA
*
25461282 CCACAAAGGCTTACCTTTCTAGA-TTTTTGCCACAAAGGCTT
1 CCACAAAGGCTTACCTTTCTAGAGATTTT-CCACAAAGGCTT
25461323 TTTTTCTCCT
Statistics
Matches: 221, Mismatches: 32, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
55 4 0.02
56 20 0.09
57 164 0.74
58 28 0.13
59 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (57 bp):
CCACAAAGGCTTACCTTTCTAGAGATTTTCCACAAAGGCTTACCTTTAATAGGTTCA
Found at i:25461510 original size:38 final size:39
Alignment explanation
Indices: 25461459--25461538 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 39
25461449 GACTTAATTG
*
25461459 TAACAAACACATCCAGACCTTTTAGAGTCAT-CATATAT
1 TAACAAACACATCCAGACCTTTCAGAGTCATCCATATAT
*
25461497 TAACAAACACATCCAGACCTTTCAGAGTCATCCATGTAT
1 TAACAAACACATCCAGACCTTTCAGAGTCATCCATATAT
25461536 TAA
1 TAA
25461539 TCCCCTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 30 0.77
39 9 0.23
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.28
Consensus pattern (39 bp):
TAACAAACACATCCAGACCTTTCAGAGTCATCCATATAT
Found at i:25466832 original size:18 final size:18
Alignment explanation
Indices: 25466811--25466848 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
25466801 TTCCAAAACA
*
25466811 TTATTC-ATTTACAAATTG
1 TTATTCAATTT-CAAAATG
25466829 TTATTCAATTTCAAAATG
1 TTATTCAATTTCAAAATG
25466847 TT
1 TT
25466849 TTTTTATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATTCAATTTCAAAATG
Found at i:25480918 original size:24 final size:24
Alignment explanation
Indices: 25480886--25480933 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25480876 GTGAGAGCCA
* *
25480886 AATATCGAGATGCTCATTT-GAGCT
1 AATAACGAGACGCTC-TTTCGAGCT
25480910 AATAACGAGACGCTCTTTCGAGCT
1 AATAACGAGACGCTCTTTCGAGCT
25480934 GTAGTGTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AATAACGAGACGCTCTTTCGAGCT
Found at i:25484912 original size:25 final size:25
Alignment explanation
Indices: 25484846--25484938 Score: 100
Period size: 25 Copynumber: 3.7 Consensus size: 25
25484836 TTCATATTCC
*
25484846 GGAATGCTCATTAGAGCACATA-AACA
1 GGAA-GCTCATTAGAGC-CATATAACG
* *
25484872 GGAAGCTCTTTCGAGCCATATAACG
1 GGAAGCTCATTAGAGCCATATAACG
*
25484897 GGAAGCTCATGT-GAGCCATGTAACG
1 GGAAGCTCAT-TAGAGCCATATAACG
*
25484922 GGAAGCTCATAAGAGCC
1 GGAAGCTCATTAGAGCC
25484939 GTAATCGGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
24 4 0.07
25 49 0.84
26 5 0.09
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
GGAAGCTCATTAGAGCCATATAACG
Found at i:25484984 original size:23 final size:23
Alignment explanation
Indices: 25484923--25484986 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
25484913 CATGTAACGG
* *
25484923 GAAGCTCATA-AGAGCCGTAATCGG
1 GAAGCTC-TAGAGAGCC-AAATCGA
* * *
25484947 GAAGTTCAAGCGAGCCAAATCGA
1 GAAGCTCTAGAGAGCCAAATCGA
25484970 GAAGCTCTAGAGAGCCA
1 GAAGCTCTAGAGAGCCA
25484987 GTAATAGAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
23 20 0.65
24 11 0.35
ACGTcount: A:0.36, C:0.22, G:0.28, T:0.14
Consensus pattern (23 bp):
GAAGCTCTAGAGAGCCAAATCGA
Found at i:25502062 original size:22 final size:22
Alignment explanation
Indices: 25502036--25502080 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
25502026 ATTATGTGTA
25502036 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
25502058 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
25502080 T
1 T
25502081 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:25507893 original size:14 final size:12
Alignment explanation
Indices: 25507871--25507914 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
25507861 AATGCTAGTG
25507871 AAAAAAAAGAAC
1 AAAAAAAAGAAC
25507883 AAAAAGCAAAGAA-
1 AAAAA--AAAGAAC
*
25507896 AAGAAAAAGAAC
1 AAAAAAAAGAAC
25507908 AAAAAAA
1 AAAAAAA
25507915 GAGAGCATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 6 0.22
12 11 0.41
13 4 0.15
14 6 0.22
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAC
Found at i:25507899 original size:19 final size:17
Alignment explanation
Indices: 25507872--25507916 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
25507862 ATGCTAGTGA
25507872 AAAAAAAGAACAAA-AAGC
1 AAAAAAAGAA-AAAGAA-C
25507890 AAAGAAAAGAAAAAGAAC
1 AAA-AAAAGAAAAAGAAC
25507908 AAAAAAAGA
1 AAAAAAAGA
25507917 GAGCATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 9 0.36
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAGAAC
Found at i:25512219 original size:49 final size:49
Alignment explanation
Indices: 25512166--25512380 Score: 202
Period size: 50 Copynumber: 4.3 Consensus size: 49
25512156 CAAAGCTATG
* *
25512166 TCCCAGACATAGTCTTACATGGGATGTT-TCTTATAC-TGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGGGAT-TTCTCATAT-CGTGCCAATGCCATA
* * *
25512215 TCCCAGATATGGTCTTACATGGGATTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGATTTCTCATATC-GTGCCAATGCCATA
* ** * * *
25512265 TCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGATTTCTCATATC-GTGCCAATGCCATA
** ** * *
25512314 TCCGTGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGATTTCTCATATC-GTGCCAATGCCATA
*
25512364 TCCCAGACATAGTCTTA
1 TCCCAGACATGGTCTTA
25512381 TTGGGACCTC
Statistics
Matches: 143, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
48 3 0.02
49 69 0.48
50 71 0.50
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGGATTTCTCATATCGTGCCAATGCCATA
Found at i:25512271 original size:50 final size:50
Alignment explanation
Indices: 25512153--25512439 Score: 276
Period size: 49 Copynumber: 5.7 Consensus size: 50
25512143 GGATATAACA
* * * ** * *
25512153 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTATAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * **
25512202 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
25512252 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
25512301 TGCCAACGCCATGTCCGTGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * *
25512351 TGCCAATGCCATGTCCCAGACATAGTCTTA-TTGGGACCTCTTATAGTCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA---TC---GG
*
25512406 TGCCAATGCCATGTCCCATACATGGTCTTACATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
25512440 AGATCTCTTT
Statistics
Matches: 197, Mismatches: 31, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 92 0.47
50 71 0.36
52 2 0.01
55 29 0.15
56 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:25522380 original size:27 final size:27
Alignment explanation
Indices: 25522339--25522805 Score: 431
Period size: 27 Copynumber: 17.3 Consensus size: 27
25522329 GTAATGGGCC
** *
25522339 TAAAATGATTGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
25522366 TAAAACGACCAAAATATCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
25522393 TAAAATGATCAAAATTCCTTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
25522420 TAAAATGATCGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
** * *
25522447 TAAAATGATTGAAATAACCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
25522474 TAAAATGACCAAAATGCCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
25522501 TAAAATAACTGAAATACCCCCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* **
25522528 TAAAATAATTGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
25522555 TAAAATGATCGAAATACCCCCGACA-AG
1 TAAAATGACCGAAATACCCTCGA-AGGG
**
25522582 TAAAATGATTGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* ** ** * *
25522609 TAAAATAACTAAAATATGCTCAAAAGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
25522636 TAAAATGACCAAAATACCTTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
25522663 TAAAATGACCGAAATAGCCC-CCAAGGG
1 TAAAATGACCGAAATA-CCCTCGAAGGG
25522690 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
25522717 TAAAATGACTGAAATACCC-CTAAAGGT
1 TAAAATGACCGAAATACCCTC-GAAGGG
* * *
25522744 TAAAATGACTGACATAACCTC-AAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
25522770 TAAAATGACCAAAATA-CCTCTGAAGGG
1 TAAAATGACCGAAATACCCTC-GAAGGG
25522797 TAAAATGAC
1 TAAAATGAC
25522806 TGTTATACCC
Statistics
Matches: 362, Mismatches: 70, Indels: 16
0.81 0.16 0.04
Matches are distributed among these distances:
25 4 0.01
26 22 0.06
27 332 0.92
28 4 0.01
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:25523014 original size:26 final size:26
Alignment explanation
Indices: 25522967--25523052 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
25522957 TGTATTGGTG
* *
25522967 GCTTTGCCA-CATATACTGTTACTAGCA
1 GCTTTG-CAGCAT-TACTATTACTGGCA
25522994 GCTTTGCAGCATTACTATTACTGGCA
1 GCTTTGCAGCATTACTATTACTGGCA
* * *
25523020 GCTTCGCTGCATCACTATTACTGGCA
1 GCTTTGCAGCATTACTATTACTGGCA
*
25523046 ACTTTGC
1 GCTTTGC
25523053 TGCGATTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 42 0.82
27 9 0.18
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (26 bp):
GCTTTGCAGCATTACTATTACTGGCA
Found at i:25523054 original size:26 final size:26
Alignment explanation
Indices: 25522985--25523055 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
25522975 ACATATACTG
* * *
25522985 TTACTAGCAGCTTTGCAGCATTACTA
1 TTACTGGCAGCTTTGCTGCATCACTA
*
25523011 TTACTGGCAGCTTCGCTGCATCACTA
1 TTACTGGCAGCTTTGCTGCATCACTA
*
25523037 TTACTGGCAACTTTGCTGC
1 TTACTGGCAGCTTTGCTGC
25523056 GATTTTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCATCACTA
Found at i:25530235 original size:54 final size:54
Alignment explanation
Indices: 25530151--25530563 Score: 442
Period size: 54 Copynumber: 7.6 Consensus size: 54
25530141 TAGGCCCATT
* * * **
25530151 AAATGACCGAAATACCCTCGAAAGGAAAAATAACCAAAATACCCTCAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTA
** * * * *
25530205 AAATGATTGAAATACACTCGAAGGGTAAAATGA-TCGAAATACCCCCGAAGGATA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACT-GAAATACCCTCAAAGGGTA
** *
25530259 AAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCGCT-GAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACC-CTCAAAGGGTA
* * * *
25530313 AAATGATCGAAATACCTTCAAAGGGTAAAATGACTGAAATACGCC-CGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATAC-CCTCAAAGGGTA
* * * *
25530367 AAATGATCGAAATAACCTCGAAGGGTAAAATGACTGAAATACGCTTAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTA
* * ** *
25530421 AAATGACTGAAATACGCTTAAAGGGTAAAATGACTGAAATACCCTTAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTA
* * *
25530475 AAATGACCGAAATACCCCCAAAGGGTAAAATAACT-AAAGTACCC-CTAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAA-TACCCTC-AAAGGGTA
* *
25530529 AAATGACTGAAATACCC-CTGAAGGTTAAAATGACT
1 AAATGACCGAAATACCCTC-GAAGGGTAAAATGACT
25530564 ATTATACCCC
Statistics
Matches: 304, Mismatches: 46, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
53 5 0.02
54 297 0.98
55 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.18
Consensus pattern (54 bp):
AAATGACCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTA
Found at i:25530286 original size:81 final size:80
Alignment explanation
Indices: 25530151--25530562 Score: 438
Period size: 81 Copynumber: 5.1 Consensus size: 80
25530141 TAGGCCCATT
* * * *
25530151 AAATGACCGAAATACCCTCGAAA-GGAAAAATAACCAAAATACCCTCAAAGGGTAAAATGATTGA
1 AAATGACCGAAATACCCTC-AAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGA
25530215 AATACACTCGAAGGGTA
65 AATAC-CTCGAAGGGTA
* * * * * **
25530232 AAATGATCGAAATACCCCCGAAGGATAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAA
*
25530297 ATACCGCTGAAGGGTA
66 ATACCTC-GAAGGGTA
* * * *
25530313 AAATGATCGAAATACCTTCAAAGGGTAAAATGACTGAAATACGCC-CGAAGGGTAAAATGA-TCG
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATAC-CCTCAAAGGGTAAAATGACT-G
25530376 AAATAACCTCGAAGGGTA
64 AAAT-ACCTCGAAGGGTA
* * * * * *
25530394 AAATGACTGAAATACGCTTAAAGGGTAAAATGACTGAAATACGCTTAAAGGGTAAAATGACTGAA
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAA
**
25530459 ATACCCTTAAAGGGTA
66 ATA-CCTCGAAGGGTA
* * *
25530475 AAATGACCGAAATACCCCCAAAGGGTAAAAT-AACTAAAGTACCC-CTAAAGGGTAAAATGACTG
1 AAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAA-TACCCTC-AAAGGGTAAAATGACTG
* *
25530538 AAATACCCCTGAAGGTTA
64 AAATACCTC-GAAGGGTA
25530556 AAATGAC
1 AAATGAC
25530563 TATTATACCC
Statistics
Matches: 277, Mismatches: 43, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
80 12 0.04
81 258 0.93
82 7 0.03
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.18
Consensus pattern (80 bp):
AAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACTGAA
ATACCTCGAAGGGTA
Found at i:25530563 original size:27 final size:27
Alignment explanation
Indices: 25530198--25530563 Score: 363
Period size: 27 Copynumber: 13.6 Consensus size: 27
25530188 AATACCCTCA
* *
25530198 AAGGGTAAAATGATTGAAATA-CACTCG
1 AAGGGTAAAATGACTGAAATACCCCT-G
*
25530225 AAGGGTAAAATGA-TCGAAATACCCCCG
1 AAGGGTAAAATGACT-GAAATACCCCTG
* *
25530252 AAGGATAAAATGACCGAAATA-CCCTCG
1 AAGGGTAAAATGACTGAAATACCCCT-G
** *
25530279 AAGGGTAAAATGACCAAAATACCGCTG
1 AAGGGTAAAATGACTGAAATACCCCTG
* *
25530306 AAGGGTAAAATGA-TCGAAATA-CCTTCA
1 AAGGGTAAAATGACT-GAAATACCCCT-G
25530333 AAGGGTAAAATGACTGAAATACGCCC-G
1 AAGGGTAAAATGACTGAAATAC-CCCTG
*
25530360 AAGGGTAAAATGA-TCGAAATA-ACCTCG
1 AAGGGTAAAATGACT-GAAATACCCCT-G
* * *
25530387 AAGGGTAAAATGACTGAAATACGCTTA
1 AAGGGTAAAATGACTGAAATACCCCTG
* * *
25530414 AAGGGTAAAATGACTGAAATACGCTTA
1 AAGGGTAAAATGACTGAAATACCCCTG
* *
25530441 AAGGGTAAAATGACTGAAATACCCTTA
1 AAGGGTAAAATGACTGAAATACCCCTG
* **
25530468 AAGGGTAAAATGACCGAAATACCCCCA
1 AAGGGTAAAATGACTGAAATACCCCTG
* *
25530495 AAGGGTAAAATAACT-AAAGTACCCCTA
1 AAGGGTAAAATGACTGAAA-TACCCCTG
25530522 AAGGGTAAAATGACTGAAATACCCCTG
1 AAGGGTAAAATGACTGAAATACCCCTG
*
25530549 AAGGTTAAAATGACT
1 AAGGGTAAAATGACT
25530564 ATTATACCCC
Statistics
Matches: 293, Mismatches: 29, Indels: 34
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.01
26 10 0.03
27 267 0.91
28 12 0.04
29 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.19
Consensus pattern (27 bp):
AAGGGTAAAATGACTGAAATACCCCTG
Found at i:25530574 original size:27 final size:27
Alignment explanation
Indices: 25530151--25530563 Score: 362
Period size: 27 Copynumber: 15.3 Consensus size: 27
25530141 TAGGCCCATT
* * *
25530151 AAATGACCGAAATACCCTCGAAA-GGAA
1 AAATGACTGAAATACCC-CTAAAGGGTA
* **
25530178 AAATAACCAAAATA-CCCTCAAAGGGTA
1 AAATGACTGAAATACCCCT-AAAGGGTA
* * *
25530205 AAATGATTGAAATA-CACTCGAAGGGTA
1 AAATGACTGAAATACCCCT-AAAGGGTA
** *
25530232 AAATGA-TCGAAATACCCCCGAAGGATA
1 AAATGACT-GAAATACCCCTAAAGGGTA
* *
25530259 AAATGACCGAAATA-CCCTCGAAGGGTA
1 AAATGACTGAAATACCCCT-AAAGGGTA
** * *
25530286 AAATGACCAAAATACCGCTGAAGGGTA
1 AAATGACTGAAATACCCCTAAAGGGTA
*
25530313 AAATGA-TCGAAATA-CCTTCAAAGGGTA
1 AAATGACT-GAAATACCCCT-AAAGGGTA
*
25530340 AAATGACTGAAATACGCCC-GAAGGGTA
1 AAATGACTGAAATAC-CCCTAAAGGGTA
* *
25530367 AAATGA-TCGAAATA-ACCTCGAAGGGTA
1 AAATGACT-GAAATACCCCT-AAAGGGTA
* *
25530394 AAATGACTGAAATACGCTTAAAGGGTA
1 AAATGACTGAAATACCCCTAAAGGGTA
* *
25530421 AAATGACTGAAATACGCTTAAAGGGTA
1 AAATGACTGAAATACCCCTAAAGGGTA
*
25530448 AAATGACTGAAATACCCTTAAAGGGTA
1 AAATGACTGAAATACCCCTAAAGGGTA
* *
25530475 AAATGACCGAAATACCCCCAAAGGGTA
1 AAATGACTGAAATACCCCTAAAGGGTA
*
25530502 AAATAACT-AAAGTACCCCTAAAGGGTA
1 AAATGACTGAAA-TACCCCTAAAGGGTA
* *
25530529 AAATGACTGAAATACCCCTGAAGGTTA
1 AAATGACTGAAATACCCCTAAAGGGTA
25530556 AAATGACT
1 AAATGACT
25530564 ATTATACCCC
Statistics
Matches: 328, Mismatches: 39, Indels: 38
0.81 0.10 0.09
Matches are distributed among these distances:
25 3 0.01
26 15 0.05
27 296 0.90
28 12 0.04
29 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.18
Consensus pattern (27 bp):
AAATGACTGAAATACCCCTAAAGGGTA
Found at i:25538823 original size:27 final size:27
Alignment explanation
Indices: 25538749--25538817 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
25538739 GTAAACTTGA
* *
25538749 GGTAGTCTGTCAAGACAATAAACACAG
1 GGTAGTCCGTCAGGACAATAAACACAG
**
25538776 GGTAGTCCGTTGGGACAATAAACACAG
1 GGTAGTCCGTCAGGACAATAAACACAG
25538803 GGTAGAT-CGTCAGGA
1 GGTAG-TCCGTCAGGA
25538818 TGATAATCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (27 bp):
GGTAGTCCGTCAGGACAATAAACACAG
Found at i:25550236 original size:79 final size:81
Alignment explanation
Indices: 25550134--25550318 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
25550124 GCTCCTCGTT
* *
25550134 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
25550197 GGAT-TTAATAAC-TCGCA
64 GGATATT-ATAACTTAGCA
* **
25550214 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
25550278 ATATTGTCACTTAGCA
66 ATATTATAACTTAGCA
25550294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25550319 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.58
80 36 0.39
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTATAACTTAGCA
Found at i:25550318 original size:40 final size:41
Alignment explanation
Indices: 25550134--25550318 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
25550124 GCTCCTCGTT
* *
25550134 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
25550174 CAAATGCCTTCGGGACTTAACCCGGAT-TTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
25550214 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
25550253 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
25550294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25550319 CATCATTCAA
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 78 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:25558129 original size:79 final size:81
Alignment explanation
Indices: 25558027--25558211 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
25558017 GCTCCTCGTT
* *
25558027 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
25558090 GGAT-TTAATAAC-TCGCA
64 GGATATT-ATAACTTAGCA
* **
25558107 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
25558171 ATATTGTCACTTAGCA
66 ATATTATAACTTAGCA
25558187 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25558212 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.58
80 36 0.39
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTATAACTTAGCA
Found at i:25558211 original size:40 final size:41
Alignment explanation
Indices: 25558027--25558211 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
25558017 GCTCCTCGTT
* *
25558027 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
25558067 CAAATGCCTTCGGGACTTAACCCGGAT-TTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
25558107 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
25558146 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
25558187 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25558212 CATCATTCAA
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 78 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:25561521 original size:15 final size:16
Alignment explanation
Indices: 25561492--25561523 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25561482 AATCCAATCC
25561492 AAAAATCACATTTTTG
1 AAAAATCACATTTTTG
*
25561508 AAAAATTACATTTTTG
1 AAAAATCACATTTTTG
25561524 CCCCTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATCACATTTTTG
Found at i:25565117 original size:44 final size:42
Alignment explanation
Indices: 25565049--25565322 Score: 270
Period size: 42 Copynumber: 6.5 Consensus size: 42
25565039 CGTTACACGA
** *
25565049 TGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCGG
1 TGGAATCAGCACTTAGCAACCACCTCATAATC-AAGGAT-ACGG
* * *
25565093 TGGACTCAGCACTTAGCAACCACCTTATAATCAATGATACGG
1 TGGAATCAGCACTTAGCAACCACCTCATAATCAAGGATACGG
* *
25565135 -GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 TGGAATCAGCACTTAGCAACCACC--TCATAATCAAGGATACGG
* *
25565177 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC-G
1 TGGAATCAGCACTTAGCAACCACCTCATAATCAAGGATACGG
* * * *
25565218 AGGAATTAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 TGGAATCAGCACTTAGCAACCACC--TCATAATCAAGGATACGG
* * * * *
25565261 TGGAATCAGCACTTAACAACCACCTTATAATTAATGATACAG
1 TGGAATCAGCACTTAGCAACCACCTCATAATCAAGGATACGG
* *
25565303 -GGAATCAGCACATAACAACC
1 TGGAATCAGCACTTAGCAACC
25565323 CCTTTTTGAT
Statistics
Matches: 191, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
40 4 0.02
41 56 0.29
42 57 0.30
43 42 0.22
44 32 0.17
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (42 bp):
TGGAATCAGCACTTAGCAACCACCTCATAATCAAGGATACGG
Found at i:25565199 original size:84 final size:84
Alignment explanation
Indices: 25565090--25565327 Score: 413
Period size: 84 Copynumber: 2.8 Consensus size: 84
25565080 CAAAGGATCC
*
25565090 CGGTGGACTCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
25565155 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* *
25565174 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGAGGAATTAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
25565239 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * * *
25565258 CGGTGGAATCAGCACTTAACAACCACCTTATAATTAATGATACAGGGAATCAGCACATAACAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
25565323 CCTTT
66 CCTTT
25565328 TTGATCAATG
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 145 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:25565235 original size:41 final size:40
Alignment explanation
Indices: 25565098--25565364 Score: 241
Period size: 41 Copynumber: 6.4 Consensus size: 40
25565088 CCCGGTGGAC
* *
25565098 TCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAA
1 TCAGCACATAGCAACC-CCTTATAATCAATGATACGAGGAA
* * *
25565139 TCAGCACATAGCAACCCCTTTCACAATCAAGGATACGGTGGAA
1 TCAGCACATAGCAACCCC-TT-ATAATCAATGATAC-GAGGAA
*
25565182 TCAGCACTTAGCAACCACCTTATAATCAATGATACGAGGAA
1 TCAGCACATAGCAACC-CCTTATAATCAATGATACGAGGAA
* * * *
25565223 TTAGCACATAGCAACCCCTTTCACAATCAAGGATACGGTGGAA
1 TCAGCACATAGCAACCCC-TT-ATAATCAATGATAC-GAGGAA
* * *
25565266 TCAGCACTTAACAACCACCTTATAATTAATGATAC-AGGGAA
1 TCAGCACATAGCAACC-CCTTATAATCAATGATACGA-GGAA
* * * *
25565307 TCAGCACATAACAACCCCTTTTTGATCAATGATTC-AGAGAA
1 TCAGCACATAGCAACCCC-TTATAATCAATGATACGAG-GAA
* *
25565348 TCTGCACCTAGCAACCC
1 TCAGCACATAGCAACCC
25565365 TTTACAGTCA
Statistics
Matches: 187, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
40 7 0.04
41 87 0.47
42 47 0.25
43 42 0.22
44 4 0.02
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (40 bp):
TCAGCACATAGCAACCCCTTATAATCAATGATACGAGGAA
Found at i:25582684 original size:66 final size:66
Alignment explanation
Indices: 25582567--25582690 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 66
25582557 TTTCTGCACT
* * * *
25582567 AATGTCGTTGCATGAGTTCATTCCAGATTGCGTCTGAAATTATCACCGCAGTTGACAGATATCCG
1 AATGTCGCTGCATGAGTTAATTCCAGATTGCATCAGAAATTATCACCGCAGTTGACAGATATCCG
25582632 C
66 C
* * *
25582633 AATGTCGCTGCATGAGTTAATTCCAGATTGCATCCAG-AATTGTCGCTGCAGTTGACAG
1 AATGTCGCTGCATGAGTTAATTCCAGATTGCAT-CAGAAATTATCACCGCAGTTGACAG
25582691 CTGTCTAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 48 0.96
67 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (66 bp):
AATGTCGCTGCATGAGTTAATTCCAGATTGCATCAGAAATTATCACCGCAGTTGACAGATATCCG
C
Found at i:25588430 original size:40 final size:40
Alignment explanation
Indices: 25588375--25588457 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
25588365 TTTCCTATGC
* *
25588375 CATAAATCTGAACTCTTCAAATTCTTGGAGTTGTAATAGT
1 CATAAATCTGAACTCTTCAAATTCTTGGAGCTGGAATAGT
25588415 CATAAATCTGAACTCTTCAAATTCTTGGAGCTGGAATAGT
1 CATAAATCTGAACTCTTCAAATTCTTGGAGCTGGAATAGT
25588455 CAT
1 CAT
25588458 TCGTCACTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (40 bp):
CATAAATCTGAACTCTTCAAATTCTTGGAGCTGGAATAGT
Found at i:25609691 original size:228 final size:226
Alignment explanation
Indices: 25609296--25609742 Score: 763
Period size: 228 Copynumber: 2.0 Consensus size: 226
25609286 ATCGGGTCAA
25609296 TATGGGTGTTACAAAACAACACAATAAAATCAAGTTACAAGAAAGTGAAAATAGATTGCAACGAA
1 TATGGGTGTTACAAAACAACACAATAAAATCAAGTTACAAGAAAGTGAAAATAGATTGCAACGAA
* * **
25609361 GAAACTCCCCCTTATGTCTAGTAGTTCCCTTTATTTTCATGGGTTGCGGTGTTATAGTATGCCCT
66 GAAACTCCCCCTTATGTCTAGTAGTTCCCCTTATTTTCATGGGGTGCAATGTTATAGTATGCCCT
* *
25609426 ATAATGCCCTAAATTTGGGCTTAGAAGAAATAGGCCTTGAGCGTAGGAACACATAAAAGTTTATG
131 ATAACGCCCCAAATTTGGGCTTAGAAGAAATAGGCCTTGAGCGTAGGAACACATAAAAGTTTATG
25609491 TGTGCAAGGAAATAACACAATTGATTGTTGG
196 TGTGCAAGGAAATAACACAATTGATTGTTGG
*
25609522 TATGGGTGTTACAAAACAACACAATAAAATC-AGATTACAAGAGAGTGAAAATAGATTGCAACGA
1 TATGGGTGTTACAAAACAACACAATAAAATCAAG-TTACAAGAAAGTGAAAATAGATTGCAACGA
25609586 AGAAACTCCTCCCCTTA-GCTCTAGTAGTTCCCCTTATTTTCATGGGGTGCAATGTTATAGTATG
65 AGAAACT-C-CCCCTTATG-TCTAGTAGTTCCCCTTATTTTCATGGGGTGCAATGTTATAGTATG
* *
25609650 CCCTATAACGCCCCGAATTTGGGCTTAGAAGAAATAGGCCTTGAGCGTAGGAAGACATAAAAGTT
127 CCCTATAACGCCCCAAATTTGGGCTTAGAAGAAATAGGCCTTGAGCGTAGGAACACATAAAAGTT
25609715 TATGTGTGCAAGGAAATAACACAATTGA
192 TATGTGTGCAAGGAAATAACACAATTGA
25609743 CTGTCTGCTT
Statistics
Matches: 208, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
225 2 0.01
226 67 0.32
227 2 0.01
228 137 0.66
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (226 bp):
TATGGGTGTTACAAAACAACACAATAAAATCAAGTTACAAGAAAGTGAAAATAGATTGCAACGAA
GAAACTCCCCCTTATGTCTAGTAGTTCCCCTTATTTTCATGGGGTGCAATGTTATAGTATGCCCT
ATAACGCCCCAAATTTGGGCTTAGAAGAAATAGGCCTTGAGCGTAGGAACACATAAAAGTTTATG
TGTGCAAGGAAATAACACAATTGATTGTTGG
Found at i:25626912 original size:39 final size:40
Alignment explanation
Indices: 25626817--25627039 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
25626807 TTGAATGATG
*
25626817 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
25626855 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25626896 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25626935 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
25626974 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
25627013 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25627040 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25627003 original size:79 final size:81
Alignment explanation
Indices: 25626817--25627039 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
25626807 TTGAATGATG
* * *
25626817 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
25626879 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
25626896 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
25626957 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
25626974 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
25627038 TG
66 TG
25627040 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:25627061 original size:79 final size:79
Alignment explanation
Indices: 25626817--25627072 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
25626807 TTGAATGATG
* * * *
25626817 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
25626878 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
25626896 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
25626960 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
25626974 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
25627037 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
25627054 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
25627073 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:25634790 original size:39 final size:40
Alignment explanation
Indices: 25634695--25634956 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
25634685 TTGAATGATG
*
25634695 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
25634733 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25634774 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
25634813 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25634852 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
25634891 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
25634930 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25634957 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25638098 original size:15 final size:15
Alignment explanation
Indices: 25638078--25638112 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
25638068 CTATGATTGT
25638078 ATGACTATAA-TTTGA
1 ATGACT-TAACTTTGA
25638093 ATGACTTAACTTTGA
1 ATGACTTAACTTTGA
25638108 ATGAC
1 ATGAC
25638113 CTATCAGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (15 bp):
ATGACTTAACTTTGA
Found at i:25644150 original size:42 final size:42
Alignment explanation
Indices: 25644103--25644204 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
25644093 ATGGGCAAGC
* **
25644103 CACACGCCCGTGTGCCAGGCCGTGTAACCTTTGAAACAGCCT
1 CACACGCCCGTGTGCCAGGCCGTATAACCTTCAAAACAGCCT
* * * **
25644145 CACACGCCCATGTTCTAGGCCGTATAACCTTCAAAATGGCCT
1 CACACGCCCGTGTGCCAGGCCGTATAACCTTCAAAACAGCCT
25644187 CACACGCCCGTGTGCCAG
1 CACACGCCCGTGTGCCAG
25644205 TTCGTGTGCT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.36, G:0.22, T:0.20
Consensus pattern (42 bp):
CACACGCCCGTGTGCCAGGCCGTATAACCTTCAAAACAGCCT
Found at i:25654277 original size:41 final size:41
Alignment explanation
Indices: 25654222--25654524 Score: 340
Period size: 41 Copynumber: 7.4 Consensus size: 41
25654212 CCTTTCGGGG
*
25654222 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
* * * * * *
25654263 CTTTCA-CAGTGTTTTTGAAAAATCACAGCTAATGCTCTGGT
1 CTTT-AGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
* * * * *
25654304 CTTTCGCGGTGTTTTTAAAAAAGCGCCGCTAATGTTCAAGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
* *
25654345 CTTTAGCGGCGTTTTTGAAAAAGAGCCGCTAATGCTCTGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
* * * *
25654386 CTTTAGCGGCGTTTCTGAAAAAGTGCCACTAATTCTCAGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
** * * *
25654427 CTTTAGCTACGATTTTGAAAAAGCGCTGCTAATGCTCAAGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
**
25654468 CTTTAGCGGCGTTTTTGAAATGGCGCCGCTAATGCTC-GTGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAG-GT
*
25654509 CTTTAGCGGCTTTTTT
1 CTTTAGCGGCGTTTTT
25654525 ATAAAAAACG
Statistics
Matches: 215, Mismatches: 44, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
41 214 1.00
42 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
Found at i:25654448 original size:123 final size:122
Alignment explanation
Indices: 25654222--25654518 Score: 375
Period size: 123 Copynumber: 2.4 Consensus size: 122
25654212 CCTTTCGGGG
* * *
25654222 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGTCTTTCA-CAGTGTTTTTGAAAAAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-GGTCTTT-AGCGGCGTTTCTGAAAAAT
* * ** * *
25654286 CACAGCTAATGCTCTGGTCTTTCGCGGTGTTTTTAAAAAAGCGCCGCTAATGTTCAAGT
64 CACAGCTAATGCTCAGGTCTTTAGCGACGATTTTAAAAAAGCGCCGCTAATGCTCAAGT
*
25654345 CTTTAGCGGCGTTTTTGAAAAAGAGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTCTGAAAAAGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC-GGTCTTTAGCGGCGTTTCTGAAAAA-T
* * * *
25654410 GC-CA-CTAATTCTCAGGTCTTTAGCTACGATTTTGAAAAAGCGCTGCTAATGCTCAAGT
64 -CACAGCTAATGCTCAGGTCTTTAGCGACGATTTTAAAAAAGCGCCGCTAATGCTCAAGT
**
25654468 CTTTAGCGGCGTTTTTGAAATGGCGCCGCTAATGCTCGTGTCTTTAGCGGC
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG-GTCTTTAGCGGC
25654519 TTTTTTATAA
Statistics
Matches: 152, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
122 2 0.01
123 146 0.96
124 3 0.02
125 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (122 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGTCTTTAGCGGCGTTTCTGAAAAATCA
CAGCTAATGCTCAGGTCTTTAGCGACGATTTTAAAAAAGCGCCGCTAATGCTCAAGT
Found at i:25657657 original size:137 final size:137
Alignment explanation
Indices: 25657411--25658137 Score: 1152
Period size: 137 Copynumber: 5.3 Consensus size: 137
25657401 GTGGATTTGT
* * * * * *
25657411 AAATTTAAGTGTTTCAGTGTTGTAAATTTAAGTGTTTAAGTGCTGTAAATTGAAGTATTTAGTTG
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
* *
25657476 CTGGAAATTGAGATGTTTTATCGTTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
66 CTGAAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
*
25657541 GTGCTAC
131 GTGCTGC
* * *
25657548 AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTG
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
* *
25657613 CTGGAAATTGAGATGCTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
66 CTGAAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
25657678 GTGCTGC
131 GTGCTGC
* *
25657685 AAAATTAAGTTTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
* *
25657750 CTGAAAATTGAGATGTTTTATAGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTGAA
66 CTGAAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
*
25657815 CTGCTGC
131 GTGCTGC
* * * *
25657822 AAATTTAAGTTTTTAAATGCTATAAATTGAAGTGTTTAAGTGCTGCAAATTAAAGTATTTAGTTG
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
*
25657887 CTGAAAATTGAGATGTTTTATGGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
66 CTGAAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
*
25657952 GTGTTGC
131 GTGCTGC
*
25657959 AAATTTAAGTGTTTAAGTGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAG-T
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTT-AGTT
* *
25658023 GCT-ACAAATTGAGATGTTTTATCGCTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTA
65 GCTGA-AAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTT
25658087 AAGTGCTGC
129 AAGTGCTGC
* *
25658096 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTG
1 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTG
25658138 TTACTTTCCA
Statistics
Matches: 548, Mismatches: 40, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
136 1 0.00
137 545 0.99
138 2 0.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.41
Consensus pattern (137 bp):
AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTG
CTGAAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
GTGCTGC
Found at i:25658018 original size:114 final size:115
Alignment explanation
Indices: 25657845--25658131 Score: 300
Period size: 114 Copynumber: 2.5 Consensus size: 115
25657835 TAAATGCTAT
* * *
25657845 AAATTGAAGTGTTTAAGTGCTGCAAATTAAAGTATTT-AGTTGCTGAAAATTG-AGATGTTTTAT
1 AAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAG-TGCTGAAAATTGAAG-TGTTTTAA
** * * * *
25657908 G-GCT-GTAATTGAGGTGTATAAAT-GTTGTTAATTGATATGTTTAAGTGTTGC
64 GTGCTACAAATTGAGATGT-TAAATCGCTG-TAATTGATATGTATAAATGTTGC
* * *
25657959 AAATTTAAGTGTTTAAGTGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTG-TTTAAGT
1 AAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGAAAATTGAAGTGTTTTAAGT
** * *
25658023 GCTACAAATTGAGATGTTTTATCGCTGTAATTGATGTGTATAAATGTTGT
66 GCTACAAATTGAGATGTTAAATCGCTGTAATTGATATGTATAAATGTTGC
* * * *
25658073 TAATTGATA-TGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
1 AAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGAAAATTGAAGTGTT
25658132 AAAGTGTTAC
Statistics
Matches: 144, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
113 5 0.03
114 120 0.83
115 19 0.13
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.40
Consensus pattern (115 bp):
AAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGAAAATTGAAGTGTTTTAAGT
GCTACAAATTGAGATGTTAAATCGCTGTAATTGATATGTATAAATGTTGC
Found at i:25658024 original size:23 final size:23
Alignment explanation
Indices: 25657411--25658137 Score: 417
Period size: 23 Copynumber: 31.8 Consensus size: 23
25657401 GTGGATTTGT
* * * *
25657411 AAATTTAAGTGTTTCAGTGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* *
25657434 AAATTTAAGTGTTTAAGTGCTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* *
25657457 AAATTGAAGTATTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGC
* *
25657480 AAATTG-AGATGTTTTA-TCGTTG-
1 AAATTGAAG-TGTTTAAGT-GCTGC
* * * * * *
25657502 TAATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* *
25657525 TAATTGATA-TGTTTAAGTGCTAC
1 AAATTGA-AGTGTTTAAGTGCTGC
*
25657548 AAATTTAAGTGTTTAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGC
*
25657571 AAATTGAAGTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAGTGCTGC
*
25657594 AAATTGAAGTGTTT-AGTTGCTGG
1 AAATTGAAGTGTTTAAG-TGCTGC
25657617 AAATTG-AGATGCTTT-A-TCGCTG-
1 AAATTGAAG-TG-TTTAAGT-GCTGC
* * * * * *
25657639 TAATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
*
25657662 TAATTGATA-TGTTTAAGTGCTGC
1 AAATTGA-AGTGTTTAAGTGCTGC
* * *
25657685 AAAATT-AAGTTTTTAAATGCTGT
1 -AAATTGAAGTGTTTAAGTGCTGC
25657708 AAATTGAAGTGTTTAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGC
*
25657731 AAATTGAAGTGTTT-AGTTGCTGA
1 AAATTGAAGTGTTTAAG-TGCTGC
*
25657754 AAATTG-AGATGTTTTA-TAGCTG-
1 AAATTGAAG-TGTTTAAGT-GCTGC
* * * * * *
25657776 TAATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* * *
25657799 TAATTGATA-TGTTGAACTGCTGC
1 AAATTGA-AGTGTTTAAGTGCTGC
* * * **
25657822 AAATTTAAGTTTTTAAATGCTAT
1 AAATTGAAGTGTTTAAGTGCTGC
25657845 AAATTGAAGTGTTTAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGC
* * *
25657868 AAATTAAAGTATTT-AGTTGCTGA
1 AAATTGAAGTGTTTAAG-TGCTGC
*
25657891 AAATTG-AGATGTTTTA-TGGCTG-
1 AAATTGAAG-TGTTTAAGT-GCTGC
* * * * * *
25657913 TAATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* *
25657936 TAATTGATA-TGTTTAAGTGTTGC
1 AAATTGA-AGTGTTTAAGTGCTGC
* *
25657959 AAATTTAAGTGTTTAAGTGCTGT
1 AAATTGAAGTGTTTAAGTGCTGC
25657982 AAATTGAAGTGTTTAAGTGCTGC
1 AAATTGAAGTGTTTAAGTGCTGC
*
25658005 AAATTGAAGTGTTTAAGTGCTAC
1 AAATTGAAGTGTTTAAGTGCTGC
*
25658028 AAATTG-AGATGTTTTA-TCGCTG-
1 AAATTGAAG-TGTTTAAGT-GCTGC
* * * * * *
25658050 TAATTGATGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAGTGCTGC
* *
25658073 TAATTGATA-TGTTAAAGTGCTGC
1 AAATTGA-AGTGTTTAAGTGCTGC
* *
25658096 AAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAGTGCTGC
*
25658119 AAATTGAAGTGTTAAAGTG
1 AAATTGAAGTGTTTAAGTG
25658138 TTACTTTCCA
Statistics
Matches: 554, Mismatches: 104, Indels: 92
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.00
22 97 0.18
23 444 0.80
24 11 0.02
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.41
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAGTGCTGC
Found at i:25659113 original size:43 final size:43
Alignment explanation
Indices: 25659065--25659352 Score: 384
Period size: 43 Copynumber: 6.7 Consensus size: 43
25659055 ATTTTTGGAG
* *
25659065 AAAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTA
*
25659108 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCATTTGTGGTA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTA
* * *
25659151 AAAACGCCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGAG-G
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTG-GTA
* * *
25659194 AAAGCGCTGCTAAAGATCATGGTCTTTAGCGGCGTTTGT-GTA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTA
* *
25659236 AAATGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGA
1 AAA-GCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTA
* * * *
25659280 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCTGCATTTGTGGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGT-GGTA
*
25659324 AAA-TGCCGCTAAAGGTCTTGGTCTTTAGC
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
25659353 AGTGTTTTTT
Statistics
Matches: 219, Mismatches: 21, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.00
42 3 0.01
43 202 0.92
44 13 0.06
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTA
Found at i:25659276 original size:129 final size:129
Alignment explanation
Indices: 25659064--25659352 Score: 436
Period size: 129 Copynumber: 2.2 Consensus size: 129
25659054 CATTTTTGGA
* *
25659064 GAAAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTG
1 GAAAGCGCTGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATG
* * *
25659129 GTCTTTAGCGGCATTTGTGGTAAAAACGCCGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTGAG
66 GTCTTTAGCGGCATTTGTGGGAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCAGCATTTGTGAG
* *
25659193 GAAAGCGCTGCTAAAGATCATGGTCTTTAGCGGCGTTTGT-GTAAAATGCGCCGCTAAAGGTCAT
1 GAAAGCGCTGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAA-GCGCCGCTAAAGGTCAT
* * * *
25659257 GGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCTGCATTTGTGGG
65 GGTCTTTAGCGGCATTTGTGGGAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCAGCATTTGTGAG
** *
25659322 GAAAATGCCGCTAAAGGTCTTGGTCTTTAGC
1 GAAAGCGCTGCTAAAGGTCTTGGTCTTTAGC
25659353 AGTGTTTTTT
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
128 6 0.04
129 137 0.96
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (129 bp):
GAAAGCGCTGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATG
GTCTTTAGCGGCATTTGTGGGAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCAGCATTTGTGAG
Found at i:25662706 original size:15 final size:15
Alignment explanation
Indices: 25662686--25662715 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25662676 GATCGTAAGT
25662686 TTGTTGAAGTCGTAG
1 TTGTTGAAGTCGTAG
25662701 TTGTTGAAGTCGTAG
1 TTGTTGAAGTCGTAG
25662716 ATTTGACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.33, T:0.40
Consensus pattern (15 bp):
TTGTTGAAGTCGTAG
Found at i:25663059 original size:27 final size:28
Alignment explanation
Indices: 25663029--25663085 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
25663019 AAGATTGTTA
*
25663029 AAATTCTTCTAAAAG-AAAACTC-AAGAG
1 AAATTCTT-GAAAAGAAAAACTCAAAGAG
25663056 AAATTCTTGAAAAGAAAAACTCAAAGAG
1 AAATTCTTGAAAAGAAAAACTCAAAGAG
25663084 AA
1 AA
25663086 TTTATTAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 5 0.19
27 15 0.56
28 7 0.26
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (28 bp):
AAATTCTTGAAAAGAAAAACTCAAAGAG
Found at i:25670426 original size:23 final size:24
Alignment explanation
Indices: 25670400--25670444 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25670390 GACCCTTACC
25670400 CGCTCACC-GCCTTATTTCTCCTT
1 CGCTCACCTGCCTTATTTCTCCTT
*
25670423 CGCTCACCTTCCTTATTTCTCC
1 CGCTCACCTGCCTTATTTCTCC
25670445 ACATAGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.09, C:0.44, G:0.07, T:0.40
Consensus pattern (24 bp):
CGCTCACCTGCCTTATTTCTCCTT
Found at i:25678180 original size:16 final size:17
Alignment explanation
Indices: 25678155--25678188 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
25678145 AAAATTCTAA
25678155 AAAAAGATATAAATTAC
1 AAAAAGATATAAATTAC
25678172 AAAAA-ATATAAATTAC
1 AAAAAGATATAAATTAC
25678188 A
1 A
25678189 TTTTAGCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAAGATATAAATTAC
Found at i:25678217 original size:30 final size:30
Alignment explanation
Indices: 25678181--25678261 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
25678171 CAAAAAATAT
*
25678181 AAATTACATTTT-AGCCCCTGAACTTTTCAA
1 AAATTACATTTTGA-CCCCTAAACTTTTCAA
* *
25678211 AAATTACATTTTGACCCCTAAATTTTTCTA
1 AAATTACATTTTGACCCCTAAACTTTTCAA
* *
25678241 AATTTACATCTTGACCCCTAA
1 AAATTACATTTTGACCCCTAA
25678262 TATTCTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
30 44 0.98
31 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTAAACTTTTCAA
Found at i:25678273 original size:30 final size:29
Alignment explanation
Indices: 25678211--25678278 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
25678201 AACTTTTCAA
* *
25678211 AAATTACATTTTGACCCCTAAATTTTTCT
1 AAATTACATCTTGACCCCTAAATTTCTCT
*
25678240 AAATTTACATCTTGACCCCT-AATATTCTGT
1 AAA-TTACATCTTGACCCCTAAAT-TTCTCT
25678270 AAATTACAT
1 AAATTACAT
25678279 TCGGGCCCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (29 bp):
AAATTACATCTTGACCCCTAAATTTCTCT
Found at i:25678972 original size:19 final size:19
Alignment explanation
Indices: 25678950--25678988 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
25678940 TCCACCGCGT
25678950 TTGGAGTTCCTAGAACGTA
1 TTGGAGTTCCTAGAACGTA
25678969 TTGGAGTTCCTAGAACGTA
1 TTGGAGTTCCTAGAACGTA
25678988 T
1 T
25678989 AAAGAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (19 bp):
TTGGAGTTCCTAGAACGTA
Found at i:25683975 original size:17 final size:18
Alignment explanation
Indices: 25683949--25683987 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
25683939 ATTTTTTTTA
*
25683949 TTTTTCCTTTC-TTTAAT
1 TTTTTACTTTCATTTAAT
*
25683966 TTTTTACTTTCATTTCAT
1 TTTTTACTTTCATTTAAT
25683984 TTTT
1 TTTT
25683988 CTTATCTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTACTTTCATTTAAT
Found at i:25684054 original size:22 final size:21
Alignment explanation
Indices: 25684029--25684070 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
25684019 TTTCATTTCT
25684029 ATTTTATGTTTGATTTTTGAAC
1 ATTTTATGTTTG-TTTTTGAAC
* *
25684051 ATTTTTTTTTTGTTTTTGAA
1 ATTTTATGTTTGTTTTTGAA
25684071 GACAGAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (21 bp):
ATTTTATGTTTGTTTTTGAAC
Found at i:25685887 original size:22 final size:22
Alignment explanation
Indices: 25685844--25685887 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
25685834 GAAAATAATC
**
25685844 AAAATTAATCAAAATTTGACAT
1 AAAATTAATCAAAATTCAACAT
* *
25685866 AAAATTTATTAAAATTCAACAT
1 AAAATTAATCAAAATTCAACAT
25685888 GTTCATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATTAATCAAAATTCAACAT
Found at i:25686587 original size:10 final size:10
Alignment explanation
Indices: 25686572--25686605 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
25686562 ACATATGCTC
25686572 TCTCTTTTTT
1 TCTCTTTTTT
25686582 TCTCTTTTTT
1 TCTCTTTTTT
25686592 TCTTCTTTTTT
1 TC-TCTTTTTT
25686603 TCT
1 TCT
25686606 TTGCATTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TCTCTTTTTT
Found at i:25686591 original size:12 final size:12
Alignment explanation
Indices: 25686569--25686605 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
25686559 AATACATATG
25686569 CTCTCTCTTTTTT
1 CTCTCT-TTTTTT
25686582 -TCTCTTTTTTT
1 CTCTCTTTTTTT
25686593 CT-TCTTTTTTT
1 CTCTCTTTTTTT
25686604 CT
1 CT
25686606 TTGCATTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
CTCTCTTTTTTT
Found at i:25686604 original size:11 final size:11
Alignment explanation
Indices: 25686574--25686606 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
25686564 ATATGCTCTC
25686574 TCTTTTTTTC-
1 TCTTTTTTTCT
25686584 TCTTTTTTTCT
1 TCTTTTTTTCT
25686595 TCTTTTTTTCT
1 TCTTTTTTTCT
25686606 T
1 T
25686607 TGCATTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TCTTTTTTTCT
Found at i:25689083 original size:19 final size:19
Alignment explanation
Indices: 25689061--25689106 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
25689051 GCGGCGTGAG
*
25689061 CTGCTGGTGTGTGCGTCAA
1 CTGCTGGTGTGTGCATCAA
*
25689080 CTGCTGGTGTGTGCATCAG
1 CTGCTGGTGTGTGCATCAA
25689099 CTGCTGGT
1 CTGCTGGT
25689107 CGAATGGGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.22, G:0.37, T:0.33
Consensus pattern (19 bp):
CTGCTGGTGTGTGCATCAA
Found at i:25689493 original size:22 final size:19
Alignment explanation
Indices: 25689454--25689496 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 19
25689444 TGCAAAGTTG
25689454 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
25689473 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
25689495 AT
1 AT
25689497 TGATTATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 2 0.10
21 3 0.14
22 10 0.48
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:25689605 original size:29 final size:29
Alignment explanation
Indices: 25689550--25689607 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
25689540 GCCTTTTGAA
* * *
25689550 AATATTTATAAAAAGAGACATCTAATTTT
1 AATATTTACAAAAAGAGACACCAAATTTT
25689579 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
25689608 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (29 bp):
AATATTTACAAAAAGAGACACCAAATTTT
Found at i:25716976 original size:12 final size:13
Alignment explanation
Indices: 25716959--25716987 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
25716949 GTCATACATG
25716959 AATAAATAAA-GC
1 AATAAATAAATGC
25716971 AATAAATAAATGC
1 AATAAATAAATGC
25716984 AATA
1 AATA
25716988 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:25733093 original size:25 final size:25
Alignment explanation
Indices: 25733065--25733115 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
25733055 CTCTGCTGAG
25733065 TTAGTTTTACACTGAGCTTTATAGC
1 TTAGTTTTACACTGAGCTTTATAGC
25733090 TTAGTTTTACACTGAGCTTTATAGC
1 TTAGTTTTACACTGAGCTTTATAGC
25733115 T
1 T
25733116 CACCTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (25 bp):
TTAGTTTTACACTGAGCTTTATAGC
Found at i:25735478 original size:29 final size:29
Alignment explanation
Indices: 25735446--25735501 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
25735436 AAAGGCCATT
25735446 CTTTTTCAAAATTTACCGAAATGGGCCGA
1 CTTTTTCAAAATTTACCGAAATGGGCCGA
* ** *
25735475 CTTTTTTATTATTTACCGGAATGGGCC
1 CTTTTTCAAAATTTACCGAAATGGGCC
25735502 ATTTTCCGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (29 bp):
CTTTTTCAAAATTTACCGAAATGGGCCGA
Found at i:25736932 original size:29 final size:29
Alignment explanation
Indices: 25736885--25736969 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 29
25736875 AGAATTAGAT
*
25736885 AAAATTAAAATTTCATGTATAATATTACAC
1 AAAATCAAAATTT-ATGTATAATATTACAC
* *
25736915 AAAATCAAAGTTTATGTATACACAATTACAC
1 AAAATCAAAATTTATGTATA-A-TATTACAC
*
25736946 ATTAAATCAAAATTCATGTATAAT
1 A--AAATCAAAATTTATGTATAAT
25736970 TTTAAGATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 7 0.16
30 12 0.27
31 8 0.18
32 1 0.02
33 17 0.38
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (29 bp):
AAAATCAAAATTTATGTATAATATTACAC
Found at i:25741756 original size:2 final size:2
Alignment explanation
Indices: 25741751--25741776 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25741741 ATAAAAATTC
25741751 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25741777 TTTCAGTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25742802 original size:80 final size:80
Alignment explanation
Indices: 25742669--25742829 Score: 277
Period size: 80 Copynumber: 2.0 Consensus size: 80
25742659 TACAACTGCA
*
25742669 ACCATTGTAGATATTTGTCTATGATATTTTCATGAAATTCAATAGATTGATTCATAATGCTATAT
1 ACCATTGTAGATATTTGTCTATGATATTTTCATGAAATTCAATAGATGGATTCATAATGCTATAT
25742734 CAGAGTCTATGACTT
66 CAGAGTCTATGACTT
* * * *
25742749 ACCATTGTAGATATTTGTCTATGTTTTTTTCCTGAAATTCAATAGATGGATTCATAATTCTATAT
1 ACCATTGTAGATATTTGTCTATGATATTTTCATGAAATTCAATAGATGGATTCATAATGCTATAT
25742814 CAGAGTCTATGACTT
66 CAGAGTCTATGACTT
25742829 A
1 A
25742830 TTCAAACCTG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (80 bp):
ACCATTGTAGATATTTGTCTATGATATTTTCATGAAATTCAATAGATGGATTCATAATGCTATAT
CAGAGTCTATGACTT
Found at i:25747072 original size:25 final size:25
Alignment explanation
Indices: 25747044--25747122 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
25747034 CTAATGGCCG
25747044 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
25747069 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
25747091 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
25747116 ATGTGAT
1 ATGTGAT
25747123 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:25747094 original size:47 final size:48
Alignment explanation
Indices: 25747031--25747255 Score: 391
Period size: 49 Copynumber: 4.7 Consensus size: 48
25747021 ATGATAGTAT
25747031 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
25747078 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
*
25747125 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
25747174 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
25747223 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
25747256 CCCGAAGGGC
Statistics
Matches: 174, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
47 80 0.46
49 90 0.52
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:25747200 original size:96 final size:95
Alignment explanation
Indices: 25747031--25747255 Score: 389
Period size: 96 Copynumber: 2.3 Consensus size: 95
25747021 ATGATAGTAT
25747031 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
25747096 ATGAATGTGAAAGTG-TATATATGTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAA
*
25747125 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
25747190 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAA
25747223 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
25747256 CCCGAAGGGC
Statistics
Matches: 124, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
94 33 0.27
96 46 0.37
98 41 0.33
99 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAA
Found at i:25747429 original size:37 final size:37
Alignment explanation
Indices: 25747373--25747451 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25747363 CCGAGCTCTA
* * *
25747373 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25747410 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25747447 AAGAC
1 AAGAC
25747452 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25764964 original size:13 final size:13
Alignment explanation
Indices: 25764946--25764970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25764936 TATTTTAATA
25764946 TTATTTTGTGTGT
1 TTATTTTGTGTGT
25764959 TTATTTTGTGTG
1 TTATTTTGTGTG
25764971 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:25766089 original size:114 final size:112
Alignment explanation
Indices: 25765948--25766188 Score: 383
Period size: 114 Copynumber: 2.1 Consensus size: 112
25765938 ATCAGCATAT
* * * *
25765948 ATATATGTGTATATTTATTTTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
25766013 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATGTATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAA--TATGTAA
* *
25766062 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTGAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
*
25766127 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATGTAT
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATGTAA
25766174 ATATGAATATGTATA
1 ATAT--ATATGTATA
25766189 AGATCTTGAG
Statistics
Matches: 118, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
112 10 0.08
114 108 0.92
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (112 bp):
ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATGTAA
Found at i:25766757 original size:41 final size:41
Alignment explanation
Indices: 25766656--25766759 Score: 154
Period size: 41 Copynumber: 2.5 Consensus size: 41
25766646 GACTTTAAGT
* *
25766656 CTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
*
25766697 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
* * *
25766738 TTAGCAGGTTAAGTACCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
25766760 ATATGTTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:25772663 original size:41 final size:41
Alignment explanation
Indices: 25772619--25772822 Score: 295
Period size: 41 Copynumber: 5.0 Consensus size: 41
25772609 GTACATCTAG
* * *
25772619 GGGTATCGAAGTACAAACAGGGGCACGTTTGTGCAATTCAG
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAA
* *
25772660 GGGTACCGAAGTACGAAC-GGGGACACGTATGAGCAATTCAA
1 GGGTACCGAAGTACAAACAGGGG-CACGTATGTGCAATTCAA
*
25772701 GGGTACCGAAGTACAAACAGGTGCACGTATGTGCAATTCAA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAA
** *
25772742 GGGTACTAAAGTACAAACAGGGGCACGTATGTGCAATTTAA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAA
25772783 GGGTACCGAAGTAC-AACTAGGGGCACGTATGTGCAATTCA
1 GGGTACCGAAGTACAAAC-AGGGGCACGTATGTGCAATTCA
25772823 TCATTATTCA
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 7 0.05
41 135 0.93
42 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (41 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAA
Found at i:25775362 original size:45 final size:45
Alignment explanation
Indices: 25775264--25775442 Score: 265
Period size: 45 Copynumber: 4.0 Consensus size: 45
25775254 AATAATAACA
* * *
25775264 GATACACGGTGG-ATCAGCACATAGC-ACCACCCTTATAGTCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* *
25775307 GATACTCGGTGGAATCAGCACATAGCAACCACCTTCATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
25775352 -AGTACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
1 GA-TACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* *
25775397 GATACCCGGTGGAATCAGCACACAGCAACCACATTTATAATCAAT
1 GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
25775442 G
1 G
25775443 GTAACCAGTA
Statistics
Matches: 124, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
43 11 0.09
44 14 0.11
45 98 0.79
46 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
Found at i:25796114 original size:20 final size:20
Alignment explanation
Indices: 25796089--25796149 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
25796079 ATAAATTCTA
25796089 AAATTTTTATAAA-TATTTTG
1 AAATTTTTA-AAACTATTTTG
* *
25796109 AAA-TTTAAAAATTATTTTG
1 AAATTTTTAAAACTATTTTG
*
25796128 AAGTTTTTAAAACTATTTTG
1 AAATTTTTAAAACTATTTTG
25796148 AA
1 AA
25796150 TTATTTTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
18 3 0.09
19 13 0.37
20 19 0.54
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (20 bp):
AAATTTTTAAAACTATTTTG
Found at i:25798113 original size:29 final size:29
Alignment explanation
Indices: 25798066--25798121 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
25798056 CATCACGTGG
* *
25798066 CCGTGTGGCAAACTGTGT-GAGCCACACGA
1 CCGTGTGCCAAACTATGTGGA-CCACACGA
*
25798095 CCGTGTGCCAGACTATGTGGACCACAC
1 CCGTGTGCCAAACTATGTGGACCACAC
25798122 AGGTGTGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (29 bp):
CCGTGTGCCAAACTATGTGGACCACACGA
Found at i:25802501 original size:11 final size:11
Alignment explanation
Indices: 25802485--25802521 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
25802475 CTTAATCACT
25802485 TTAATATTAAA
1 TTAATATTAAA
25802496 TTAATATTAAA
1 TTAATATTAAA
*
25802507 -T-CTATTAAA
1 TTAATATTAAA
25802516 TTAATA
1 TTAATA
25802522 GAATATTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:25802579 original size:17 final size:17
Alignment explanation
Indices: 25802487--25802569 Score: 55
Period size: 17 Copynumber: 4.6 Consensus size: 17
25802477 TAATCACTTT
25802487 AATATTAAATTAATATTA
1 AATATTAAATTAA-ATTA
25802505 AATCTATTAAATT-AA-TA
1 AA--TATTAAATTAAATTA
* *
25802522 GAATATT-CATCTACAAGATA
1 -AATATTAAAT-TA-AA-TTA
*
25802542 AATATTAAATTAAATTT
1 AATATTAAATTAAATTA
25802559 AATATTAAATT
1 AATATTAAATT
25802570 TATTAAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 19
0.69 0.05 0.25
Matches are distributed among these distances:
15 2 0.04
16 5 0.10
17 14 0.27
18 9 0.17
19 9 0.17
20 13 0.25
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:25802583 original size:20 final size:20
Alignment explanation
Indices: 25802489--25802585 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 20
25802479 ATCACTTTAA
*
25802489 TATTAAATTAATATTAAATC
1 TATTAAATTAATATTAAATT
*
25802509 TATTAAATTAATA-GAATATT
1 TATTAAATTAATATTAA-ATT
* *
25802529 CATCTACAAGATAAATATTAAA-T
1 TAT-T--AA-ATTAATATTAAATT
*
25802552 TA--AATTTAATATTAAATT
1 TATTAAATTAATATTAAATT
*
25802570 TATTAAAATAATATTA
1 TATTAAATTAATATTA
25802586 TTTTTGGAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
17 10 0.17
18 5 0.09
19 2 0.03
20 27 0.47
21 1 0.02
23 4 0.07
24 7 0.12
25 2 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (20 bp):
TATTAAATTAATATTAAATT
Found at i:25802912 original size:20 final size:20
Alignment explanation
Indices: 25802874--25802912 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25802864 GTTCGACTAG
*
25802874 TTTTGGATCTCGGTATCAAT
1 TTTTGGATCTCGATATCAAT
* *
25802894 TTTTGGTTCTCGATTTCAA
1 TTTTGGATCTCGATATCAA
25802913 CTTTCAATCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (20 bp):
TTTTGGATCTCGATATCAAT
Found at i:25805468 original size:101 final size:102
Alignment explanation
Indices: 25805348--25805532 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
25805338 AAAGTGATGG
* *
25805348 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTACCGG-ATGATAATGGTCACATGTGTAGT
*
25805411 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGCAAGCTACTATGCGTACCGGATAGTTTCGA
* *
25805449 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
25805514 CTATGTGCAAGCTACTATG
66 CTATGTGCAAGCTACTATG
25805533 TGAACTGAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 33 0.43
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGATACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAAGCTACTATGCGTACCGGATAGTTTCGA
Found at i:25805479 original size:51 final size:51
Alignment explanation
Indices: 25805344--25805530 Score: 227
Period size: 51 Copynumber: 3.7 Consensus size: 51
25805334 AGTGAAAGTG
* *
25805344 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
25805393 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * * *
25805444 TTCGATCACGTGTGTAGTACTATGTGCAGGATACTACGTGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
*
25805496 ATGGTCACATGTGTAGTACTATGTGCAAGCTACTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
25805531 TGTGAACTGA
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 40 0.35
51 71 0.62
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:25805611 original size:44 final size:45
Alignment explanation
Indices: 25805541--25805628 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 45
25805531 TGTGAACTGA
* * *
25805541 ACATCATTGATTAGTTAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
25805586 ACATCATTGA-TAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
25805629 AGTATATGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 30 0.75
45 10 0.25
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:25805699 original size:23 final size:22
Alignment explanation
Indices: 25805673--25805716 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
25805663 AATTGACTAA
25805673 GTGT-AATTGAATAATGAATATAG
1 GTGTGAATTGAAT--TGAATATAG
25805696 GTGTGGAATTGAATTGAATAT
1 GTGT-GAATTGAATTGAATAT
25805717 CGACTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (22 bp):
GTGTGAATTGAATTGAATATAG
Found at i:25813280 original size:8 final size:8
Alignment explanation
Indices: 25813263--25813293 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
25813253 GTGTCTTGCG
*
25813263 CACGGCCA
1 CACGGTCA
25813271 CACGGTCA
1 CACGGTCA
25813279 CACGGTCA
1 CACGGTCA
25813287 CACGGTC
1 CACGGTC
25813294 GTGTCTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.10
Consensus pattern (8 bp):
CACGGTCA
Found at i:25826035 original size:28 final size:28
Alignment explanation
Indices: 25825995--25826122 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
25825985 NNNNNNNNTC
*
25825995 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
25826023 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
25826052 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
25826080 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
25826109 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25826123 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25826085 original size:57 final size:57
Alignment explanation
Indices: 25825994--25826122 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
25825984 NNNNNNNNNT
*
25825994 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
25826051 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
25826108 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
25826123 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:25831699 original size:37 final size:38
Alignment explanation
Indices: 25831649--25831760 Score: 121
Period size: 37 Copynumber: 3.1 Consensus size: 38
25831639 ATGATAACCG
* *
25831649 GGCTAAGTCCCGAAGCATTTGTGCTAGTGACTA-ATTC
1 GGCTAAGTCCCGAAGCATTTGTGCGAGTGACTATATCC
* *
25831686 GGCTAAG-CTCCGAAGGATTTGTGCGAGTTACTATATCC
1 GGCTAAGTC-CCGAAGCATTTGTGCGAGTGACTATATCC
*
25831724 GGCT-AGTCCCG-AG-ATTTGTG-GAGTTACTATA-CC
1 GGCTAAGTCCCGAAGCATTTGTGCGAGTGACTATATCC
25831757 GGCT
1 GGCT
25831761 GAAGGCTTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
33 6 0.09
34 11 0.16
35 7 0.10
36 3 0.04
37 33 0.49
38 8 0.12
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (38 bp):
GGCTAAGTCCCGAAGCATTTGTGCGAGTGACTATATCC
Found at i:25832125 original size:22 final size:21
Alignment explanation
Indices: 25832084--25832127 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
25832074 GAATGTGCAT
25832084 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
25832106 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
25832128 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:25840659 original size:22 final size:22
Alignment explanation
Indices: 25840553--25840713 Score: 139
Period size: 22 Copynumber: 7.1 Consensus size: 22
25840543 TATTGATATA
*
25840553 TCAGCTCG-TAAGAGCTTGCTGTTT
1 TCAGCTCGAT-AGAGCTTACTG--T
* *
25840577 TCAGCTC-ATTGAAGCTTACCGTT
1 TCAGCTCGATAG-AGCTTACTG-T
* *
25840600 TCAACTC-ATATGAGCTTACTAT
1 TCAGCTCGATA-GAGCTTACTGT
* *
25840622 TCACACTCAATAGAGCTTACTGT
1 TCA-GCTCGATAGAGCTTACTGT
*
25840645 TTAGCTCGATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
* *
25840667 TCAACTTGATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
*
25840689 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
25840711 TCA
1 TCA
25840714 TCAGCTTAAG
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
22 62 0.54
23 34 0.30
24 19 0.17
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (22 bp):
TCAGCTCGATAGAGCTTACTGT
Found at i:25840683 original size:44 final size:44
Alignment explanation
Indices: 25840589--25840713 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
25840579 AGCTCATTGA
* * *
25840589 AGCTTACCGTTTCAACTCATATGAGCTTACTATTCACACTCAATAG
1 AGCTTACTGTTT-AGCTCATA-GAGCTTACTGTTCACACTCAATAG
**
25840635 AGCTTACTGTTTAGCTCGATAGAGCTTACTGTTCA-ACTTGATAG
1 AGCTTACTGTTTAGCTC-ATAGAGCTTACTGTTCACACTCAATAG
*
25840679 AGCTTACTGTTCAGCTCAATAGAGCTTACTGTTCA
1 AGCTTACTGTTTAGCTC-ATAGAGCTTACTGTTCA
25840714 TCAGCTTAAG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
44 40 0.56
45 17 0.24
46 14 0.20
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (44 bp):
AGCTTACTGTTTAGCTCATAGAGCTTACTGTTCACACTCAATAG
Found at i:25840912 original size:20 final size:19
Alignment explanation
Indices: 25840887--25840964 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
25840877 TGTTTATAGG
*
25840887 GATGAATTACTATTGATACA
1 GATGAACTACTATT-ATACA
* * *
25840907 GATGAATTACTGTTATTACT
1 GATGAACTACTATTA-TACA
*
25840927 GATAAACTACTATTTATACA
1 GATGAACTACTA-TTATACA
25840947 GATGAACTACTAGTTATA
1 GATGAACTACTA-TTATA
25840965 TGAATGAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.92
21 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (19 bp):
GATGAACTACTATTATACA
Found at i:25840983 original size:40 final size:40
Alignment explanation
Indices: 25840887--25840986 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
25840877 TGTTTATAGG
* *
25840887 GATGAATTACTATTGATACAGATGAATTACTGTTATTACT
1 GATGAATTACTATTTATACAGATGAACTACTGTTATTACT
* *
25840927 GATAAACTACTATTTATACAGATGAACTACTAGTTA-TA-T
1 GATGAATTACTATTTATACAGATGAACTACT-GTTATTACT
25840966 GAATGAATTAC-AGTTTATACA
1 G-ATGAATTACTA-TTTATACA
25840987 AATAGAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.06
40 44 0.86
41 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (40 bp):
GATGAATTACTATTTATACAGATGAACTACTGTTATTACT
Found at i:25845510 original size:15 final size:16
Alignment explanation
Indices: 25845492--25845521 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25845482 GAAAGCTGAA
25845492 AATTT-ATTAAATGAC
1 AATTTAATTAAATGAC
25845507 AATTTAATTAAATGA
1 AATTTAATTAAATGA
25845522 AAAAGAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (16 bp):
AATTTAATTAAATGAC
Found at i:25847153 original size:29 final size:29
Alignment explanation
Indices: 25847111--25847187 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
25847101 GAATAATTAT
*
25847111 CATGGGCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
25847140 CATGGCCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
25847169 CATGGCCCGAAGCCAAATC
1 CATGGCCCGAAGCCAAATC
25847188 GGGATAACTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.16
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:25849778 original size:48 final size:48
Alignment explanation
Indices: 25849716--25850083 Score: 244
Period size: 48 Copynumber: 7.7 Consensus size: 48
25849706 GATATGTGTA
* *
25849716 CCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACAATATGAGGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAG
* * *
25849764 CCAGTGTAAGACCATGTCTGGGACATGGCGTCGTCCGCAATATGA-AGG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGA-G
** * * * * *** *
25849812 CCAGTGTAATTCCATGTTTGGAACATGGCATCGGCAATGTTGTGTA-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATG-AGAG
* * * ** *
25849860 CTAATGTAAGACCATGTTTGGGACATGGCATCGA-CATTGATATGTGCA-
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAATATGAG-AG
* ** * *
25849908 CTAGTGTAAGACCATGTCTATGACATGGCATCAACCACATTATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAG
* * * * ** *
25849956 CCAGCGTAGGACCATGTCTGGGACATAGCATCG-GCATTGAGACT-AGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAATA-TGAGAG
* * * * * * *
25850004 CTAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAG
* * * *
25850052 CCAATGTAAGACCATGTTTAGAACATGGCATC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC
25850084 AACAATTCAC
Statistics
Matches: 247, Mismatches: 62, Indels: 22
0.75 0.19 0.07
Matches are distributed among these distances:
47 5 0.02
48 235 0.95
49 7 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAG
Found at i:25849987 original size:144 final size:142
Alignment explanation
Indices: 25849720--25850086 Score: 353
Period size: 144 Copynumber: 2.5 Consensus size: 142
25849710 TGTGTACCAG
* * * *
25849720 TGTAAGACCATGTCTGGGACATGGCGTCGACCA-CAATATGAGGGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CATCGATATG-TGACCAGTGTAAGACCATGTCT-
* * ** * * ** * *
25849784 GGACATGGCGTCGTCCGCAATATGAAGGCCAGTGTAATTCCATGTTTGGAACATGGCATCGGCAA
63 AGACATGGCATCAACCACAATATGAAGGCCAGCGTAAGACCATGTCTGGAACATAGCATCGGCAA
* **
25849849 TGTTGTGTA-AGCTAA
128 TG-AGACTAGAGCTAA
* * *
25849864 TGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGTGCACTAGTGTAAGACCATGTCTAT
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTG-ACCAGTGTAAGACCATGTCTA-
* * * *
25849929 GACATGGCATCAACCACATTATG-AGAGCCAGCGTAGGACCATGTCTGGGACATAGCATCGGCAT
64 GACATGGCATCAACCACAATATGAAG-GCCAGCGTAAGACCATGTCTGGAACATAGCATCGGCAA
*
25849993 TGAGACTAGAGCTAG
128 TGAGACTAGAGCTAA
* * * * * *
25850008 TGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAATGTAAGACCATGTTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGA-CCAGTGTAAGACCATGTCTAG
25850073 AACATGGCATCAAC
65 -ACATGGCATCAAC
25850087 AATTCACCCT
Statistics
Matches: 182, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
143 10 0.05
144 172 0.95
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (142 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGACCAGTGTAAGACCATGTCTAGA
CATGGCATCAACCACAATATGAAGGCCAGCGTAAGACCATGTCTGGAACATAGCATCGGCAATGA
GACTAGAGCTAA
Found at i:25852467 original size:6 final size:6
Alignment explanation
Indices: 25852437--25852486 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
25852427 AAGAAACATT
* * *
25852437 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
25852485 AT
1 AT
25852487 GCAGCCCATC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
5 1 0.03
6 35 0.95
7 1 0.03
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:25852479 original size:18 final size:18
Alignment explanation
Indices: 25852437--25852486 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
25852427 AAGAAACATT
*
25852437 ATCAGAACTAGAATCAAA
1 ATCAGAATTAGAATCAAA
* *
25852455 ATGAGAATTAGAATCAGA
1 ATCAGAATTAGAATCAAA
*
25852473 ATCAGAATCAGAAT
1 ATCAGAATTAGAAT
25852487 GCAGCCCATC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (18 bp):
ATCAGAATTAGAATCAAA
Found at i:25852686 original size:27 final size:27
Alignment explanation
Indices: 25852648--25852761 Score: 142
Period size: 27 Copynumber: 4.2 Consensus size: 27
25852638 AGCATGGCTG
* * *
25852648 CCAGAATAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
25852674 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* *
25852701 CCAGAACAGATATTTATGGCATAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
25852728 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
25852756 CCAGAA
1 CCAGAA
25852762 TGCTTCCTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 12 0.15
27 41 0.52
28 26 0.33
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:25853084 original size:81 final size:81
Alignment explanation
Indices: 25852956--25853279 Score: 472
Period size: 81 Copynumber: 4.0 Consensus size: 81
25852946 AGGGCAAAAT
* * * * * **
25852956 GGTAATTTTACCCCACAAGGGTATCTC-GATAATTCTACCCTATAGGGGTATTTCGGTATTTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCAATATTTCTA
25853020 CCCTACAAGGGTATTTC
65 CCCTACAAGGGTATTTC
*
25853037 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAATATTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATATTTCTAC
25853102 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* **
25853118 GGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATATTTCTAC
25853183 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
25853199 GGTAATTCTACCCTATAGAGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTT-TG
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAAT-ATTTCTA
*
25853263 CCCTACAGGGGTATTTC
65 CCCTACAAGGGTATTTC
25853280 AATAATTTTG
Statistics
Matches: 221, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 216 0.98
82 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATATTTCTAC
CCTACAAGGGTATTTC
Found at i:25853289 original size:27 final size:27
Alignment explanation
Indices: 25852957--25853286 Score: 410
Period size: 27 Copynumber: 12.2 Consensus size: 27
25852947 GGGCAAAATG
* * * *
25852957 GTAATTTTACCCCACAAGGGTATCTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
25852983 GATAATTCTACCCTATAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
25853011 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
25853038 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
25853065 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
25853092 ATATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
25853119 GTAATTCTACCCTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
25853146 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
25853173 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
25853200 GTAATTCTACCCTATAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
25853227 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
25853254 ATAATTTTGCCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
25853281 ATAATT
1 GTAATT
25853287 TTGTAAATCG
Statistics
Matches: 266, Mismatches: 36, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 264 0.99
28 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:25855020 original size:27 final size:26
Alignment explanation
Indices: 25854989--25855083 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
25854979 TTAGTTTACC
* *
25854989 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
25855016 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
25855043 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
25855070 AAATCACTAAAATA
1 AAATTACTCAAATA
25855084 AGATAGAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.84
28 6 0.11
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:25855130 original size:27 final size:27
Alignment explanation
Indices: 25855088--25855337 Score: 311
Period size: 27 Copynumber: 9.3 Consensus size: 27
25855078 AAAATAAGAT
* * *
25855088 AGAATTACCATATTACCATCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
25855115 AGAATTACTGTTTTACCCTTGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
25855142 AAAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
25855169 AGAATTACCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
**
25855196 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
25855223 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
25855250 AGAATTACCATTTTACCCTTGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
25855277 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
25855304 AAAATTACTGTTTTATCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
25855331 AAAATTA
1 AGAATTA
25855338 TTAAAATACC
Statistics
Matches: 194, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 194 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:25855337 original size:81 final size:81
Alignment explanation
Indices: 25855086--25855329 Score: 362
Period size: 81 Copynumber: 3.0 Consensus size: 81
25855076 CTAAAATAAG
* * * *
25855086 ATAGAATTACCATATTACCATCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACC
*
25855151 ATTTTACCCTCGATTT
66 GTTTTACCCTCGATTT
* * * *
25855167 ATAGAATTACCGTTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACC
25855232 GTTTTACCCTCGATTT
66 GTTTTACCCTCGATTT
* * *
25855248 ATAGAATTACCATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACC
* *
25855313 GTTTTATCCTCAATTT
66 GTTTTACCCTCGATTT
25855329 A
1 A
25855330 CAAAATTATT
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 145 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACC
GTTTTACCCTCGATTT
Found at i:25855356 original size:27 final size:27
Alignment explanation
Indices: 25855326--25855485 Score: 151
Period size: 27 Copynumber: 5.9 Consensus size: 27
25855316 TTATCCTCAA
* * * *
25855326 TTTACAAAATTATTAAAATACCCTTAG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
25855353 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACTAAAATACCCCTGG
* * *
25855379 ATCAGTAAAATTACCAAAATACCCCTGG
1 TTTA-TAAAATTACTAAAATACCCCTGG
*
25855407 TTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACTAAAATACCCCTGG
* *
25855434 TTTGTAAAATTACTAAAATACCCCTGA
1 TTTATAAAATTACTAAAATACCCCTGG
* * **
25855461 CTTGTAAAATTACCGAAATACCCCT
1 TTTATAAAATTACTAAAATACCCCT
25855486 ATAGGGTAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.05
27 103 0.90
28 6 0.05
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACTAAAATACCCCTGG
Found at i:25855364 original size:81 final size:81
Alignment explanation
Indices: 25855086--25855366 Score: 305
Period size: 81 Copynumber: 3.5 Consensus size: 81
25855076 CTAAAATAAG
* * * * *
25855086 ATAGAATTACCATATTA-CCATCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTAC
1 ATAGAATTACCATTTTACCCTTAG-TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
*
25855150 CATTTTACCCTCGATTT
65 CGTTTTACCCTCGATTT
* * * * ** *
25855167 ATAGAATTACCGTTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTTAGTTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
25855232 GTTTTACCCTCGATTT
66 GTTTTACCCTCGATTT
*
25855248 ATAGAATTACCATTTTACCCTT-GATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
1 ATAGAATTACCATTTTACCCTTAG-TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
* * *
25855312 TGTTTTATCCTCAATTT
65 CGTTTTACCCTCGATTT
* * ** *** *
25855329 ACAAAATTATTAAAATACCCTTAGTTTACAAAATTACC
1 ATAGAATTACCATTTTACCCTTAGTTTACAGAATTACC
25855367 AAAATACCCT
Statistics
Matches: 168, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
81 165 0.98
82 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTTAGTTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
GTTTTACCCTCGATTT
Found at i:25855416 original size:81 final size:81
Alignment explanation
Indices: 25855331--25855485 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
25855321 CTCAATTTAC
* *
25855331 AAAATTATTAAAATACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTACC
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTACC
25855394 AAAATACCCCTGGTTTGT
64 AAAATACCCCTGGTTTGT
* ** * * *
25855412 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCGA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
25855477 AATACCCCT
66 AATACCCCT
25855486 ATAGGGTAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 59 0.92
82 5 0.08
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGGTTTGT
Found at i:25855498 original size:27 final size:27
Alignment explanation
Indices: 25855468--25855745 Score: 369
Period size: 27 Copynumber: 10.3 Consensus size: 27
25855458 TGACTTGTAA
*
25855468 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
25855495 AATTATTGCAATA-CCTTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
25855521 AATTACCGAAATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
25855548 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
25855575 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
25855602 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
25855629 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
25855656 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
25855683 AAATATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
25855710 AATTGCTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
25855737 AATTACCGA
1 AATTACCGA
25855746 GATAGCCTGT
Statistics
Matches: 214, Mismatches: 36, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 20 0.09
27 194 0.91
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:25855499 original size:54 final size:54
Alignment explanation
Indices: 25855410--25855745 Score: 347
Period size: 54 Copynumber: 6.2 Consensus size: 54
25855400 CCCCTGGTTT
** ** * * **
25855410 GTAAAATTACTAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCCTG-ACTT
1 GTAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTGTA-GG
* * * * *
25855464 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATTGCAATA-CCTTGTATG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
* * *
25855517 GTAGAATTACCGAAATACCGCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
* * * * * * *
25855571 GCAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGGAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
* * *
25855625 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
* * *
25855679 GTAGAAA-TATCGGAATACCCCTGTAGGGTAGAATTGCTGAAATACCCCTGTAGG
1 GTA-AAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
*
25855733 GTAGAATTACCGA
1 GTAAAATTACCGA
25855746 GATAGCCTGT
Statistics
Matches: 237, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
53 46 0.19
54 189 0.80
55 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
Found at i:25856203 original size:25 final size:25
Alignment explanation
Indices: 25856171--25856238 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
25856161 TTGTATTCAC
* *
25856171 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTTTGATTCTGTCACCTA
*
25856196 ATAT-TGATTCTGATTCTGTCACCTA
1 AT-TCTGATTTTGATTCTGTCACCTA
25856221 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
25856239 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (25 bp):
ATTCTGATTTTGATTCTGTCACCTA
Found at i:25858262 original size:27 final size:26
Alignment explanation
Indices: 25858231--25858325 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
25858221 TTAGTTTACC
* *
25858231 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
25858258 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
25858285 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
25858312 AAATCACTGAAATA
1 AAATTACTCAAATA
25858326 AGATAGAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:25858370 original size:27 final size:27
Alignment explanation
Indices: 25858328--25858552 Score: 351
Period size: 27 Copynumber: 8.3 Consensus size: 27
25858318 CTGAAATAAG
25858328 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * * *
25858355 ACAGAATTACCGTTTTACCTTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
25858382 ACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
25858409 ATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * *
25858436 ATAAAATTACTATTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
25858463 ACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
25858490 ATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
25858517 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
25858544 ATAGAATTA
1 ATAGAATTA
25858553 TTGTTTTATC
Statistics
Matches: 178, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:25858393 original size:54 final size:54
Alignment explanation
Indices: 25858328--25858579 Score: 351
Period size: 54 Copynumber: 4.7 Consensus size: 54
25858318 CTGAAATAAG
* * *
25858328 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCTTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
* * *
25858382 ACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
* * *
25858436 ATAAAATTACTATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
* *
25858490 ATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
*** * * *
25858544 ATAGAATTATTGTTTTATCCTTGATTTACAAAATTA
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTA
25858580 TTGAAATACC
Statistics
Matches: 177, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 177 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
Found at i:25858578 original size:27 final size:27
Alignment explanation
Indices: 25858340--25858582 Score: 180
Period size: 27 Copynumber: 9.0 Consensus size: 27
25858330 AGAATTACCA
* **
25858340 TTTTACCCTCGATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTATTG
* * * ***
25858367 TTTTACCTTCAATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* * **
25858394 TTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTATTG
* * *
25858421 TTTTACCCTCGATTTATAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
25858448 TTTTACCCTCAATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* * **
25858475 TTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTATTG
* * ***
25858502 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTATTG
* *
25858529 TTTTACCCTCGATTTATAGAATTATTG
1 TTTTACCCTCGATTTACAAAATTATTG
* *
25858556 TTTTATCCTTGATTTACAAAATTATTG
1 TTTTACCCTCGATTTACAAAATTATTG
25858583 AAATACCCTT
Statistics
Matches: 191, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTATTG
Found at i:25858613 original size:27 final size:27
Alignment explanation
Indices: 25858583--25858728 Score: 125
Period size: 27 Copynumber: 5.4 Consensus size: 27
25858573 AAAATTATTG
*
25858583 AAATACCCTTAGTTTACAAAATTACCA
1 AAATACCCTTAGTTTATAAAATTACCA
* * *
25858610 AAATACCC-TCGATCAGTAAAATTACCA
1 AAATACCCTTAGTTTA-TAAAATTACCA
* * * *
25858637 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCTTAGTTTATAAAATTACCA
* * * *
25858664 AAATACCCCTGGTTTTTAAAATTACTA
1 AAATACCCTTAGTTTATAAAATTACCA
* * *
25858691 AAATACCCCT-GACTTGTAAAATTACCA
1 AAATACCCTTAG-TTTATAAAATTACCA
25858718 AAATACCCTTA
1 AAATACCCTTA
25858729 TAGGGTAGAA
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.05
27 93 0.92
28 3 0.03
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATACCCTTAGTTTATAAAATTACCA
Done.