Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 93 of 213
Found at i:25858658 original size:81 final size:81
Alignment explanation
Indices: 25858573--25858725 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
25858563 CTTGATTTAC
* * *
25858573 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTACC
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTACC
25858636 AAAATACCCCTGGTTTGT
64 AAAATACCCCTGGTTTGT
* ** * *
25858654 AAAATTACTAAAATACCCCTGGTTTTTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
25858719 AATACCC
66 AATACCC
25858726 TTATAGGGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 57 0.92
82 5 0.08
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGGTTTGT
Found at i:25858740 original size:27 final size:27
Alignment explanation
Indices: 25858710--25858993 Score: 365
Period size: 27 Copynumber: 10.6 Consensus size: 27
25858700 TGACTTGTAA
* *
25858710 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
25858737 AATTATCGCAATA-CCTTGTATGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
25858763 AATTACCGAAATACCGC-TGTAGGGTAG
1 AATTACCGAAATACC-CTTGTAGGGTAG
* *
25858790 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
25858817 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
25858844 AATTACTGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
25858871 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
25858898 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
25858925 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
25858952 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
25858979 AATTATCGAGATACC
1 AATTACCGAAATACC
25858994 TTCTGAGGTA
Statistics
Matches: 225, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 23 0.10
27 201 0.89
28 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:25858876 original size:81 final size:81
Alignment explanation
Indices: 25858710--25858986 Score: 405
Period size: 81 Copynumber: 3.4 Consensus size: 81
25858700 TGACTTGTAA
* * * *
25858710 AATTACCAAAATACCCTTATAGGGTAGAATTATCGCAATA-CCTTGTATGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCGAAA
25858774 TACCGC-TGTAGGGTAG
66 TACC-CTTGTAGGGTAG
* * * *
25858790 AATTACCGAAATACCCCTGTAGGGCAGAATTATCGCAATACCCCTGTAGGGTAGAATTACTGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCGAAA
25858855 TACCCTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * * *
25858871 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCGAAA
*
25858936 TACCCTTGTAGGGTAA
66 TACCCTTGTAGGGTAG
*
25858952 AATTACTGAAATACCCCTGTAGGGTAGAATTATCG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCG
25858987 AGATACCTTC
Statistics
Matches: 177, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 37 0.21
81 140 0.79
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAG
Found at i:25859444 original size:6 final size:6
Alignment explanation
Indices: 25859413--25859500 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
25859403 TTGTATTCAC
* *
25859413 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
25859462 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
25859501 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:25859451 original size:31 final size:31
Alignment explanation
Indices: 25859413--25859491 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
25859403 TTGTATTCAC
* * *
25859413 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
25859444 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
25859475 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
25859492 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:25862018 original size:49 final size:48
Alignment explanation
Indices: 25861938--25862110 Score: 152
Period size: 49 Copynumber: 3.6 Consensus size: 48
25861928 TGTTGTGTGT
** * * *
25861938 CAGTGTAAGACCTGTCTCAGATATGGTATCGATACCAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAT-CCAATAGATGAAAGC
* * * *
25861987 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGATC-CAATAGATGAAAGC
* * * ** **
25862036 CAGTGTAAGACATGCCTGGGACACGGCATCGACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-TCCAATAGATGAAAGC
25862083 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
25862111 GTCAGCATAT
Statistics
Matches: 98, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.15
48 14 0.14
49 69 0.70
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGATCCAATAGATGAAAGC
Found at i:25867707 original size:51 final size:49
Alignment explanation
Indices: 25867584--25867716 Score: 178
Period size: 49 Copynumber: 2.7 Consensus size: 49
25867574 AAGCTATCTA
* *
25867584 GTACGCATAGTAGCCTGCACTTAGTACTATACATGTGACCAACAGTCTG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTG
* * * *
25867633 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG--TCT-G
25867684 GTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GTACGCATAGTAGCCTGCACTTAGTACTACACA
25867717 TGCGACCTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
48 4 0.05
49 35 0.48
50 2 0.03
51 32 0.44
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTG
Found at i:25870472 original size:29 final size:29
Alignment explanation
Indices: 25870431--25870531 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
25870421 TAATGTGACC
*
25870431 GGGCCTAACGGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* * *
25870460 GTGCCTAATGGGCCATATACAGGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* * *
25870489 GGGCCTAATAGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATAAATGTGATTT
*
25870517 GGGCTTAATGGGCCA
1 GGGCCTAATGGGCCA
25870532 GATACAGGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
28 15 0.25
29 45 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATGTGATTT
Found at i:25870503 original size:58 final size:57
Alignment explanation
Indices: 25870431--25870540 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
25870421 TAATGTGACC
* * * *
25870431 GGGCCTAACGGGCCATATAAATGTGATTTGTGCCTAATGGGCCATATACAGGTGATTT
1 GGGCCTAACAGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATTT
* * *
25870489 GGGCCTAATAGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 GGGCCTAACAGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
25870541 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (57 bp):
GGGCCTAACAGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATTT
Found at i:25873811 original size:30 final size:30
Alignment explanation
Indices: 25873777--25873837 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25873767 TTCCCGAGCC
25873777 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
25873807 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
25873837 T
1 T
25873838 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:25874653 original size:64 final size:64
Alignment explanation
Indices: 25874572--25874755 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
25874562 AGACATTATG
* * * *
25874572 ATGTAGCTAGGTCGCATGGGTGATACTATCTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATATGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
25874636 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--T-ATGTACACCATGTAGACAAGAGAGCTACGAGAT
25874701 AA
63 AA
* * * *
25874703 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATATGTACACCATGTAG-ACAAGAGAGC
25874756 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 20 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATATGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:25878381 original size:28 final size:28
Alignment explanation
Indices: 25878338--25878446 Score: 121
Period size: 29 Copynumber: 3.9 Consensus size: 28
25878328 CATGATTATG
25878338 AATGTGATTGGGCCTAACGGG-CATATA
1 AATGTGATTGGGCCTAACGGGCCATATA
*
25878365 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGA-TTGGGCCTAACGGGCCATATA
* * * * *
25878394 CAGGTGATTTGGGCATAATGGGCCATATG
1 AATGTGA-TTGGGCCTAACGGGCCATATA
* *
25878423 AATATGATTGGGCTTAACGGGCCA
1 AATGTGATTGGGCCTAACGGGCCA
25878447 GATACAGGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 7 0.10
28 28 0.40
29 35 0.50
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAACGGGCCATATA
Found at i:25878434 original size:57 final size:56
Alignment explanation
Indices: 25878341--25878455 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 56
25878331 GATTATGAAT
* * * *
25878341 GTGATTGGGCCTAACGGGCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCCTAACGGGCCAGATACAG
* * *
25878397 GTGATTTGGGCATAATGGGCCATATGAATATGA-TTGGGCTTAACGGGCCAGATACAG
1 GTGA-TTGGGCATAACGGG-CATATAAATATGATTTGGGCCTAACGGGCCAGATACAG
25878454 GT
1 GT
25878456 ATGTGAAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 4 0.08
57 35 0.70
58 11 0.22
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (56 bp):
GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCCTAACGGGCCAGATACAG
Found at i:25883993 original size:42 final size:42
Alignment explanation
Indices: 25883946--25884030 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
25883936 TGTCGTTTAC
* *
25883946 TTGATGCCATAGT-CCA-ACTACGGTCTTACACGAAGTCCCATA
1 TTGATGCCAT-GTCCCAGAC-ACGGTCTTACACGAAATCACATA
*
25883988 TTGATGCCATGTCCCAGACATGGTCTTACACGAAATCACATA
1 TTGATGCCATGTCCCAGACACGGTCTTACACGAAATCACATA
25884030 T
1 T
25884031 CAATGCCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 2 0.05
42 34 0.89
43 2 0.05
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
TTGATGCCATGTCCCAGACACGGTCTTACACGAAATCACATA
Found at i:25884062 original size:48 final size:47
Alignment explanation
Indices: 25883991--25884266 Score: 363
Period size: 48 Copynumber: 5.8 Consensus size: 47
25883981 TCCCATATTG
* *
25883991 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* * * *
25884039 ATGCCATATCCCATATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* * *
25884087 ATACCATGTCCCAGACATGGTCTTACTGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
* * *
25884134 ATGCCATGTCCCAGACATGGTCTTATATAGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
** *
25884182 ATGTTATGTCCCAGACATGGTCTTACATATGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
*
25884230 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACA
25884267 ATACCATAGC
Statistics
Matches: 199, Mismatches: 27, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
47 44 0.22
48 155 0.78
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
Found at i:25884249 original size:143 final size:144
Alignment explanation
Indices: 25883991--25884266 Score: 430
Period size: 143 Copynumber: 1.9 Consensus size: 144
25883981 TCCCATATTG
* * *
25883991 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCAATGCCAATGCCATATCCCATATA
1 ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
*
25884056 TGGTCTTACATGGGATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTAC-TGGGATC
66 TGGTCTTACATAGGATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACATGGGATC
25884120 ACATATCGATGCCA
131 ACATATCGATGCCA
* * ** *
25884134 ATGCCATGTCCCAGACATGGTCTTATATAG-GATCACATATCAATGCCAATGTTATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-AGAAATCACATATCAATGCCAATGCCATATCCCAGAC
* *
25884198 ATGGTCTTACATATGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
65 ATGGTCTTACATAGGATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACATGGGAT
25884263 CACA
130 CACA
25884267 ATACCATAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
143 109 0.91
144 11 0.09
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
TGGTCTTACATAGGATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACATGGGATC
ACATATCGATGCCA
Found at i:25884292 original size:37 final size:37
Alignment explanation
Indices: 25884246--25884328 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
25884236 TGTCCCAGAC
*
25884246 ATGGTCTTACATGGGATCACAATACCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATACCATAGCCCAGCT
* * * ** *
25884283 ATGGCCTTACATGTCATTATGATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATACCATAGCCCAGCT
25884320 ATGGTCTTA
1 ATGGTCTTA
25884329 TACGTACTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATACCATAGCCCAGCT
Found at i:25885270 original size:20 final size:20
Alignment explanation
Indices: 25885245--25885288 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
25885235 AACAGAGGTC
*
25885245 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTAGG
*
25885265 ACACGCCTGTGTGCTTTAGG
1 ACACGCCCGTGTGCTTTAGG
25885285 ACAC
1 ACAC
25885289 ACTCGTGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTAGG
Found at i:25885296 original size:20 final size:19
Alignment explanation
Indices: 25885251--25885297 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
25885241 GGTCACACGC
* *
25885251 CCGTGTGCTTTGGGACACG
1 CCGTGTGCTTTAGGACACA
25885270 CCTGTGTGCTTTAGGACACA
1 CC-GTGTGCTTTAGGACACA
25885290 CTCGTGTG
1 C-CGTGTG
25885298 GGTAGGCCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.88
21 1 0.04
ACGTcount: A:0.13, C:0.26, G:0.32, T:0.30
Consensus pattern (19 bp):
CCGTGTGCTTTAGGACACA
Found at i:25886997 original size:43 final size:43
Alignment explanation
Indices: 25886823--25887018 Score: 191
Period size: 43 Copynumber: 4.6 Consensus size: 43
25886813 TCGTACAATA
* * *
25886823 CCAATGTCCTAGACGTGGTCTTACATGTAATC-AAATATCGATA
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAA-ATCGATG
* * * * * ** *
25886866 CCACTATCCCAGCCATGGTCTTACA--CAAAATCAGATACGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAAT-CGATG
* * *
25886908 CCGATGTCCCAGACATGGTCTTACATGTAATCCCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
*
25886951 CCAATGTCCCAGATGTGGTCTTACATGTAATCTCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
** *
25886994 CCAACATCCCAAACGTGGTCTTACA
1 CCAATGTCCCAGACGTGGTCTTACA
25887019 CAAAATCACA
Statistics
Matches: 121, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
41 4 0.03
42 26 0.21
43 85 0.70
44 6 0.05
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
CCAATGTCCCAGACGTGGTCTTACATGTAATCTCAAATCGATG
Found at i:25894841 original size:33 final size:33
Alignment explanation
Indices: 25894801--25894866 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
25894791 AAATCACTCC
*
25894801 ATATACACATATTTAGGGCATTTCACAAATTAT
1 ATATACACATATTTAAGGCATTTCACAAATTAT
25894834 ATATACACATATTTAAGGCATTTCACAAATTAT
1 ATATACACATATTTAAGGCATTTCACAAATTAT
25894867 CTCTCATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (33 bp):
ATATACACATATTTAAGGCATTTCACAAATTAT
Found at i:25915668 original size:20 final size:21
Alignment explanation
Indices: 25915633--25915671 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
25915623 ATAATAGTTT
25915633 AATAATAAAAACAAAGAAATA
1 AATAATAAAAACAAAGAAATA
*
25915654 AATAA-AAAAAGAAAGAAA
1 AATAATAAAAACAAAGAAA
25915672 GGGAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (21 bp):
AATAATAAAAACAAAGAAATA
Found at i:25916958 original size:18 final size:18
Alignment explanation
Indices: 25916901--25916977 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
25916891 GACTGTCTGC
* *
25916901 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
25916919 TACAGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
*
25916937 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
* * *
25916955 TACTGATTAACTGATTAT
1 TACTGAATAAATGACTAT
25916973 TACTG
1 TACTG
25916978 TTGACTGACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:25919281 original size:38 final size:38
Alignment explanation
Indices: 25919226--25919439 Score: 194
Period size: 38 Copynumber: 5.2 Consensus size: 38
25919216 ACGCAAATTA
* * *
25919226 ACATGTATAACCATGGCATATCCACTTAACACCACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
*
25919264 ACATGTTTAACTGTGGCATATCCACTTAGCACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
*
25919305 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* *
25919349 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCAC-GT--T
*
25919390 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
25919434 ACATGT
1 ACATGT
25919440 ATCAATATGT
Statistics
Matches: 145, Mismatches: 13, Indels: 34
0.76 0.07 0.18
Matches are distributed among these distances:
38 59 0.41
39 3 0.02
40 6 0.04
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 4 0.03
47 55 0.38
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:25919345 original size:47 final size:47
Alignment explanation
Indices: 25919271--25919477 Score: 261
Period size: 47 Copynumber: 4.6 Consensus size: 47
25919261 GTTACATGTT
*
25919271 TAACTGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
25919318 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
25919356 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
25919403 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * *
25919451 TAATCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCA
25919478 TGTTTTTTTA
Statistics
Matches: 138, Mismatches: 12, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
38 27 0.20
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 58 0.42
48 37 0.27
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:25919376 original size:85 final size:85
Alignment explanation
Indices: 25919233--25919439 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
25919223 TTAACATGTA
* * *
25919233 TAACCATGGCATATCCACTTAACACCACGTTACATGTTTAACTGTGGCATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
*
25919298 CGTTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
*
25919318 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
25919383 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
25919403 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
25919440 ATCAATATGT
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:25919465 original size:48 final size:47
Alignment explanation
Indices: 25919356--25919477 Score: 172
Period size: 48 Copynumber: 2.6 Consensus size: 47
25919346 GTTACATGTT
*
25919356 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
* * * * *
25919403 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACATTA-ATGAATCAATATATG
*
25919451 TAATCATGGTATATCCACTTAGCACCA
1 TAACCATGGTATATCCACTTAGCACCA
25919478 TGTTTTTTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 30 0.45
48 37 0.55
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (47 bp):
TAACCATGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
Found at i:25922349 original size:46 final size:46
Alignment explanation
Indices: 25922239--25922457 Score: 216
Period size: 46 Copynumber: 4.7 Consensus size: 46
25922229 CTTCTATATG
*
25922239 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ACATTTCG-
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCGA
*
25922284 TAGCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
* * * *
25922331 GGCCGATGCATGTCCCAGACATGTCTTACAGTAGCTCT-CGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA
* * * * *
25922377 TACCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT-GT
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACAT-CTCGA
*
25922425 TGCCGATGCATGTCTCAGACATGTCTTACACTA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTA
25922458 CCAAACAAAT
Statistics
Matches: 145, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 68 0.47
47 28 0.19
48 21 0.14
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:25930861 original size:27 final size:26
Alignment explanation
Indices: 25930824--25930935 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
25930814 AGCATGGCTG
** *
25930824 CCAGAACAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
25930850 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
25930878 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
25930905 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
25930932 CCAG
1 CCAG
25930936 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:25935454 original size:47 final size:47
Alignment explanation
Indices: 25935400--25935589 Score: 263
Period size: 47 Copynumber: 4.0 Consensus size: 47
25935390 GATTTCATGC
** * *
25935400 GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
25935447 GATGAATGTGAACATGCATAAATGTCATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
25935494 GATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * *
25935541 GATGAATATGAACATGCATATATGTGATAAAGCCAAACGGTCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
25935588 GA
1 GA
25935590 AATATATATA
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:25935664 original size:48 final size:48
Alignment explanation
Indices: 25935593--25935740 Score: 287
Period size: 48 Copynumber: 3.1 Consensus size: 48
25935583 AATGTGAAAT
25935593 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
25935641 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
*
25935689 ATATATATGAGATATGTATATGTAGTAAAGCCGAATGGCTAGTGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
25935737 ATAT
1 ATAT
25935741 GTAGGCGATG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
Found at i:25935998 original size:37 final size:37
Alignment explanation
Indices: 25935890--25935998 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
25935880 GGAAATATAT
*
25935890 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
25935927 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
25935964 TCCGGGTGAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
25935999 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:25942553 original size:47 final size:47
Alignment explanation
Indices: 25942475--25942699 Score: 369
Period size: 47 Copynumber: 4.8 Consensus size: 47
25942465 CCCTTCGGGA
* * * * * *
25942475 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25942522 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25942569 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25942616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25942663 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
25942700 AATCCTAAAT
Statistics
Matches: 166, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 166 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25945357 original size:20 final size:20
Alignment explanation
Indices: 25945332--25945373 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
25945322 TTTGGTGACT
25945332 CGGTTTAGCGGTCTCGAAAC
1 CGGTTTAGCGGTCTCGAAAC
25945352 CGGTTTAGCGGTCTCGAAAC
1 CGGTTTAGCGGTCTCGAAAC
25945372 CG
1 CG
25945374 CTTTCCGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (20 bp):
CGGTTTAGCGGTCTCGAAAC
Found at i:25947101 original size:40 final size:40
Alignment explanation
Indices: 25946759--25947088 Score: 475
Period size: 40 Copynumber: 8.2 Consensus size: 40
25946749 CCAGCATGAT
* * * * * *
25946759 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
25946799 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
25946839 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
25946879 TGCTCTTCGGGATTTA-ACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACTAGCACGAA
* *
25946919 TGCTCTTTGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
25946959 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
25946999 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
25947039 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
25947079 TGCTCTTCGG
1 TGCTCTTCGG
25947089 GATTTAGCCC
Statistics
Matches: 265, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.01
40 259 0.98
41 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:25948563 original size:47 final size:47
Alignment explanation
Indices: 25948487--25948615 Score: 186
Period size: 47 Copynumber: 2.7 Consensus size: 47
25948477 CTTCGGGACT
* * * * *
25948487 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
25948534 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
25948581 TATCACATATATACACTTTCACATTCATCACATCG
1 TATCACATATATACACTTTCACATTCATCACATCG
25948616 AATCCTAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:25952721 original size:26 final size:27
Alignment explanation
Indices: 25952616--25952726 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
25952606 AGCATGGCTG
* * *
25952616 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAATAGATAATTGTGGCAGAGCCA
* *
25952642 CCAGATATAGATAATCGTGGCAGAGCAA
1 CCAGA-ATAGATAATTGTGGCAGAGCCA
*
25952670 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAATAGATAAT-TGTGGCAGAGCCA
*
25952697 CCAG-ATAGATAATTGTGGCATAGCCA
1 CCAGAATAGATAATTGTGGCAGAGCCA
25952723 CCAG
1 CCAG
25952727 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 28 0.39
27 29 0.41
28 14 0.20
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAATAGATAATTGTGGCAGAGCCA
Found at i:25952726 original size:53 final size:53
Alignment explanation
Indices: 25952616--25952726 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 53
25952606 AGCATGGCTG
* *
25952616 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCAA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGA-ATAGATAATCGTGGCAGAGCAA
* * * *
25952670 CCAGAACAGAAATATGTGGCAGAGCCACCAG-ATAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGAATAGATAATCGTGGCAGAGCAA
25952723 CCAG
1 CCAG
25952727 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 23 0.46
54 11 0.22
55 16 0.32
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (53 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGAATAGATAATCGTGGCAGAGCAA
Found at i:25957045 original size:39 final size:40
Alignment explanation
Indices: 25957002--25957169 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
25956992 CTCGTTCAAG
* * * *
25957002 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
25957041 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
25957081 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
25957121 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
25957161 TGCCTTCGG
1 TGCCTTCGG
25957170 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:25957101 original size:79 final size:78
Alignment explanation
Indices: 25957002--25957221 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 78
25956992 CTCGTTCAAG
* * * *
25957002 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATACAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA-ATT
*
25957067 AA-AACTCGCACGAA
64 AATAACTCGCACAAA
* * * *
25957081 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATT
25957146 AATAACTCGCACAAA
64 AATAACTCGCACAAA
* * * *
25957161 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTC-GGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
25957222 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 51 0.43
80 59 0.50
81 7 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
TAACTCGCACAAA
Found at i:25957182 original size:40 final size:40
Alignment explanation
Indices: 25957039--25957169 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
25957029 TAACTCATAC
* *
25957039 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
25957079 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25957119 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
25957159 AATGCCTTCGG
1 AATGCCTTCGG
25957170 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25964794 original size:39 final size:40
Alignment explanation
Indices: 25964751--25964918 Score: 121
Period size: 40 Copynumber: 4.2 Consensus size: 40
25964741 CTCGTTCAAG
* * *
25964751 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACATAACCCGGATTATA-AAACTCACACGAA
* * *
25964790 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
* * * * *
25964830 TGCCTTCGGGACTTAACCCGAAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACATAACCCG-GATTA-TAAAACTCACACGAA
* * * * *
25964870 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACATAACCCGG-ATTATAAAACTCACACGAA
25964910 TGCCTTCGG
1 TGCCTTCGG
25964919 ATCTTAGTCC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
39 26 0.24
40 78 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
Found at i:25964931 original size:40 final size:40
Alignment explanation
Indices: 25964788--25964971 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
25964778 TAACTCATAC
* *
25964788 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * *
25964828 AATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25964868 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
25964908 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
25964949 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25964972 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25964955 original size:80 final size:79
Alignment explanation
Indices: 25964786--25964971 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 79
25964776 AGTAACTCAT
* * *
25964786 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGA
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGA
*
25964851 AATTAGTATCTCGC
66 AATTAGTATCTAGC
**
25964865 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACC
*
25964928 CG-GATATAGTCA-CTTAGC
63 CGAAAT-TAGT-ATC-TAGC
*
25964946 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
25964972 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.14
80 71 0.76
81 9 0.10
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGA
AATTAGTATCTAGC
Found at i:25968853 original size:46 final size:46
Alignment explanation
Indices: 25968803--25968965 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 46
25968793 TCAAGTTCGT
* *
25968803 AACATATGTAGGAGCTCGAAACCTAAACCTGTATTCTCGAGTCCAC
1 AACATATGCAGGAGCTCGAAACCTATACCTGTATTCTCGAGTCCAC
* * ***
25968849 AACATATGTAGGAGCTCGAAACCTATTCCTGTATTCTCGAGTCTGT
1 AACATATGCAGGAGCTCGAAACCTATACCTGTATTCTCGAGTCCAC
* * * *
25968895 AACATATGCAGGAGCTTTG-AACCTATTA-TTGAATTCTTGAGTCCAC
1 AACATATGCAGGAGC-TCGAAACCTA-TACCTGTATTCTCGAGTCCAC
**
25968941 AACATATGCAAAAGCTCGAAACCTA
1 AACATATGCAGGAGCTCGAAACCTA
25968966 GGCAAAACTC
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
45 2 0.02
46 92 0.95
47 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (46 bp):
AACATATGCAGGAGCTCGAAACCTATACCTGTATTCTCGAGTCCAC
Found at i:25972052 original size:25 final size:25
Alignment explanation
Indices: 25971986--25972055 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
25971976 CAAGCCCATT
* * *
25971986 TCACAGCTCATGTGAGCAATTATAG
1 TCACAGCTCGTGTGAGCATTTACAG
* * *
25972011 TTACAACTCGTGCGAGCATTTACAG
1 TCACAGCTCGTGTGAGCATTTACAG
*
25972036 TCACAGCTTGTGTGAGCATT
1 TCACAGCTCGTGTGAGCATT
25972056 GTTCCCACGT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
TCACAGCTCGTGTGAGCATTTACAG
Found at i:25972206 original size:40 final size:38
Alignment explanation
Indices: 25972144--25972290 Score: 159
Period size: 40 Copynumber: 3.7 Consensus size: 38
25972134 TATGTGAAAA
** *
25972144 AATAGATATATGAAATGGTTATATGAATCGATTATATGG
1 AATAGATATACAAAATGATTATATGAATC-ATTATATGG
*
25972183 AACTAGATATACAAAATTATTATATGAATCAATTATATGG
1 AA-TAGATATACAAAATGATTATATGAATC-ATTATATGG
* * * *
25972223 AAATAGATATACGAAATGGTTATATTAATCAGTTGTATGG
1 -AATAGATATACAAAATGATTATATGAATCA-TTATATGG
*
25972263 TAATAGATATACAGAATGATTATATGAA
1 -AATAGATATACAAAATGATTATATGAA
25972291 GTTAAACGGA
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 85 0.94
41 2 0.02
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (38 bp):
AATAGATATACAAAATGATTATATGAATCATTATATGG
Found at i:25972262 original size:80 final size:80
Alignment explanation
Indices: 25972143--25972290 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
25972133 TTATGTGAAA
* *
25972143 AAATAGATATATGAAATGGTTATATGAATCGATTATATGG-AACTAGATATACAAAATTATTATA
1 AAATAGATATACGAAATGGTTATATGAATCGATTATATGGTAA-TAGATATACAAAATGATTATA
25972207 TGAATCAATTATATGG
65 TGAATCAATTATATGG
* * *
25972223 AAATAGATATACGAAATGGTTATATTAATC-AGTTGTATGGTAATAGATATACAGAATGATTATA
1 AAATAGATATACGAAATGGTTATATGAATCGA-TTATATGGTAATAGATATACAAAATGATTATA
25972287 TGAA
65 TGAA
25972291 GTTAAACGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
79 1 0.02
80 58 0.95
81 2 0.03
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (80 bp):
AAATAGATATACGAAATGGTTATATGAATCGATTATATGGTAATAGATATACAAAATGATTATAT
GAATCAATTATATGG
Found at i:25972953 original size:14 final size:14
Alignment explanation
Indices: 25972931--25972964 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
25972921 TTTTATATGC
*
25972931 ATTTTGAATGGTTG
1 ATTTGGAATGGTTG
25972945 ATTTGGAATGGTTG
1 ATTTGGAATGGTTG
*
25972959 ACTTGG
1 ATTTGG
25972965 TACAAATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.03, G:0.32, T:0.44
Consensus pattern (14 bp):
ATTTGGAATGGTTG
Found at i:25979114 original size:2 final size:2
Alignment explanation
Indices: 25979103--25979133 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
25979093 TTTTTTTCTT
*
25979103 TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
25979134 TTGGAAAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:25979461 original size:21 final size:21
Alignment explanation
Indices: 25979435--25979480 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
25979425 CTCAAAATCA
*
25979435 TCTTACTGAGGAACCCTTTTC
1 TCTTACTGAGGAACCCTTCTC
25979456 TCTTACTGAGGAACCCTTCTC
1 TCTTACTGAGGAACCCTTCTC
25979477 TCTT
1 TCTT
25979481 TGGTCTTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.39
Consensus pattern (21 bp):
TCTTACTGAGGAACCCTTCTC
Found at i:25990391 original size:8 final size:8
Alignment explanation
Indices: 25990375--25990442 Score: 59
Period size: 8 Copynumber: 8.5 Consensus size: 8
25990365 GTTTATTAAA
*
25990375 TAGGGTTT
1 TAGGTTTT
25990383 TAGGTTTTT
1 TAGG-TTTT
*
25990392 TAGGATTT
1 TAGGTTTT
*
25990400 TA--TTAT
1 TAGGTTTT
*
25990406 TAGGGTTT
1 TAGGTTTT
25990414 TAGGTTGTT
1 TAGGTT-TT
25990423 TAGGTTTT
1 TAGGTTTT
*
25990431 TAGGGTTT
1 TAGGTTTT
25990439 TAGG
1 TAGG
25990443 GTTAGAGTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
6 4 0.08
8 29 0.60
9 15 0.31
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.54
Consensus pattern (8 bp):
TAGGTTTT
Found at i:25990432 original size:31 final size:31
Alignment explanation
Indices: 25990356--25990430 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 31
25990346 GTTTTTGTTA
*
25990356 TTGTTTAGGGTTTATTAAATAGGGTTTTAGG
1 TTGTTTAGGTTTTATTAAATAGGGTTTTAGG
* *
25990387 TTTTTTAGGATTTTATT-ATTAGGGTTTTAGG
1 TTGTTTAGG-TTTTATTAAATAGGGTTTTAGG
25990418 TTGTTTAGGTTTT
1 TTGTTTAGGTTTT
25990431 TAGGGTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
30 4 0.10
31 29 0.74
32 6 0.15
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (31 bp):
TTGTTTAGGTTTTATTAAATAGGGTTTTAGG
Found at i:25990453 original size:39 final size:41
Alignment explanation
Indices: 25990381--25990459 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 41
25990371 TAAATAGGGT
** *
25990381 TTTAGGTTTTTTAGGATTTTATTATTAGGGTTTT-AGGTTG
1 TTTAGGTTTTTTAGGATTTTAGGATTAGAGTTTTAAGGTTG
* *
25990421 TTTAGG-TTTTTAGGGTTTTAGGGTTAGAGTTTTAAGGTT
1 TTTAGGTTTTTTAGGATTTTAGGATTAGAGTTTTAAGGTT
25990460 TAAAAATGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 22 0.67
40 11 0.33
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (41 bp):
TTTAGGTTTTTTAGGATTTTAGGATTAGAGTTTTAAGGTTG
Found at i:25992402 original size:22 final size:22
Alignment explanation
Indices: 25992376--25992420 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
25992366 ATTATATGTA
25992376 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
25992398 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
25992420 T
1 T
25992421 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:25994677 original size:17 final size:17
Alignment explanation
Indices: 25994655--25994708 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
25994645 AATCGCCACA
25994655 AATATTCTTTGGTTTGT
1 AATATTCTTTGGTTTGT
25994672 AATATTTCATTT--TTT-T
1 AATA-TTC-TTTGGTTTGT
*
25994688 ATATATTCTTTGGTATGT
1 A-ATATTCTTTGGTTTGT
25994706 AAT
1 AAT
25994709 CTTCATTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
15 3 0.10
16 5 0.17
17 14 0.47
18 5 0.17
19 3 0.10
ACGTcount: A:0.24, C:0.06, G:0.11, T:0.59
Consensus pattern (17 bp):
AATATTCTTTGGTTTGT
Found at i:25995649 original size:33 final size:32
Alignment explanation
Indices: 25995612--25995702 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 32
25995602 CCGCGGGTTC
*
25995612 TGTGAAATGATAACAAATATCAACTTTTCATTT
1 TGTGAAATGATAA-AAATATCAACTGTTCATTT
* *
25995645 TGTGAAATTATAAAAAAATTACAA-TGTTCATTT
1 TGTGAAATGATAAAAATA-T-CAACTGTTCATTT
*
25995678 TGTAAAATGATAATAAATATCAACT
1 TGTGAAATGATAA-AAATATCAACT
25995703 AGCAAATATT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
32 7 0.15
33 34 0.71
34 7 0.15
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (32 bp):
TGTGAAATGATAAAAATATCAACTGTTCATTT
Found at i:26002585 original size:16 final size:17
Alignment explanation
Indices: 26002548--26002587 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
26002538 AAAGATGGAC
26002548 ATATAT-TTTTAAAGAA
1 ATATATATTTTAAAGAA
26002564 A-A-ATATTTTAAA-AA
1 ATATATATTTTAAAGAA
26002578 ATATATATTT
1 ATATATATTT
26002588 CTTTAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 5 0.24
15 9 0.43
16 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
ATATATATTTTAAAGAA
Found at i:26002863 original size:15 final size:14
Alignment explanation
Indices: 26002845--26002885 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
26002835 CCAAACAAAG
26002845 AATTTTAAAATCATA
1 AATTTTAAAATC-TA
26002860 AATTTT-AAATCTA
1 AATTTTAAAATCTA
26002873 AATATTTAAAATC
1 AAT-TTTAAAATC
26002886 CAAAATCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.21
14 8 0.33
15 11 0.46
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTTAAAATCTA
Found at i:26002880 original size:14 final size:14
Alignment explanation
Indices: 26002845--26002882 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
26002835 CCAAACAAAG
26002845 AATTTTAAAATCATA
1 AATTTT-AAATCATA
26002860 AATTTTAAATC-TA
1 AATTTTAAATCATA
26002873 AATATTTAAA
1 AAT-TTTAAA
26002883 ATCCAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 11 0.50
15 6 0.27
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTTAAATCATA
Found at i:26005830 original size:18 final size:18
Alignment explanation
Indices: 26005804--26005850 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
26005794 CATACAATAG
26005804 TATAGGTTCGC-TGAATACC
1 TATA-GTTCGCAT-AATACC
*
26005823 TATAGTTCGCATAGTACC
1 TATAGTTCGCATAATACC
26005841 TA-AGTTCGCA
1 TATAGTTCGCA
26005851 ACAGACAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 8 0.31
18 13 0.50
19 5 0.19
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (18 bp):
TATAGTTCGCATAATACC
Found at i:26010141 original size:20 final size:19
Alignment explanation
Indices: 26010091--26010145 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
26010081 ATTTTCCAAC
*
26010091 TTAGTTTAATTAATAGTTAAA
1 TTAG-TTAATTAA-ACTTAAA
*
26010112 TTAGTATAATTAAACTTTAA
1 TTAGT-TAATTAAACTTAAA
26010132 TTAAGTTAATTAAA
1 TT-AGTTAATTAAA
26010146 TAAGATTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (19 bp):
TTAGTTAATTAAACTTAAA
Found at i:26026487 original size:10 final size:10
Alignment explanation
Indices: 26026472--26026496 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26026462 AGAGGTCTTA
26026472 TTTTCAAGTG
1 TTTTCAAGTG
26026482 TTTTCAAGTG
1 TTTTCAAGTG
26026492 TTTTC
1 TTTTC
26026497 CTCATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.56
Consensus pattern (10 bp):
TTTTCAAGTG
Found at i:26026787 original size:22 final size:22
Alignment explanation
Indices: 26026761--26026802 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26026751 TTCTGACTAG
* *
26026761 GGTATCGCAATATCCTTACCTA
1 GGTATCCCAATATCCCTACCTA
*
26026783 GGTATCCCGATATCCCTACC
1 GGTATCCCAATATCCCTACC
26026803 GTGTGGGGAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (22 bp):
GGTATCCCAATATCCCTACCTA
Found at i:26030789 original size:12 final size:12
Alignment explanation
Indices: 26030774--26030834 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
26030764 CTAAATAGAA
26030774 ATAATAATATAT
1 ATAATAATATAT
26030786 ATAATAATATTAT
1 ATAATAATA-TAT
* *
26030799 AAGAATAATAGAT
1 -ATAATAATATAT
* *
26030812 AGAATAATA-AA
1 ATAATAATATAT
26030823 ATAAATAATATA
1 AT-AATAATATA
26030835 GAAATATAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
11 2 0.05
12 25 0.61
13 6 0.15
14 8 0.20
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:26030826 original size:26 final size:26
Alignment explanation
Indices: 26030776--26030826 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26030766 AAATAGAAAT
* * **
26030776 AATAATATATATAATAATATTATAAG
1 AATAATAGATAGAATAATAAAATAAG
26030802 AATAATAGATAGAATAATAAAATAA
1 AATAATAGATAGAATAATAAAATAA
26030827 ATAATATAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (26 bp):
AATAATAGATAGAATAATAAAATAAG
Found at i:26030875 original size:14 final size:14
Alignment explanation
Indices: 26030856--26030896 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
26030846 TTATAAATCG
26030856 AAATATATTAATAT
1 AAATATATTAATAT
*
26030870 AAATATAATAATAT
1 AAATATATTAATAT
26030884 AAATATTATTAAT
1 AAATA-TATTAAT
26030897 TACTTAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:26055790 original size:43 final size:43
Alignment explanation
Indices: 26055703--26055887 Score: 174
Period size: 43 Copynumber: 4.3 Consensus size: 43
26055693 TCTGCTAAAG
* * * *
26055703 TTAGTGGCGTTTTT-CCACAAACGCCGCTAAAGAACATGACCT
1 TTAGCGGCGTTTTTACCAAAAACGCCACTAAAGAACATGATCT
* * * * *
26055745 TTAGTGGCGTTTTTACTAAAAATGTCATTAAAGAACATGATCT
1 TTAGCGGCGTTTTTACCAAAAACGCCACTAAAGAACATGATCT
* * * * *
26055788 TTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACATGATCT
1 TTAGCGGCGTTTTTACCAAAAACGCCACTAAAGAACATGATCT
* * ** * *
26055831 TTAGCGGCGTTTTTCCCACAAACTTCGCTAAAGAACATGACCT
1 TTAGCGGCGTTTTTACCAAAAACGCCACTAAAGAACATGATCT
*
26055874 TTAGCAGCGTTTTT
1 TTAGCGGCGTTTTT
26055888 TTATGAGAAG
Statistics
Matches: 119, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 14 0.12
43 105 0.88
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTTTACCAAAAACGCCACTAAAGAACATGATCT
Found at i:26055863 original size:86 final size:85
Alignment explanation
Indices: 26055703--26055886 Score: 235
Period size: 86 Copynumber: 2.2 Consensus size: 85
26055693 TCTGCTAAAG
* * * *
26055703 TTAGTGGCGTTTTTCCACAAACGCCGCTAAAGAACATGACCTTTAGTGGCGTTTTTACTAAAAAT
1 TTAGCGGCGTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTACCAAAAAT
* *
26055768 GTCATTAAAGAACATGATCT
66 GTCACTAAAGAACATGACCT
* * *
26055788 TTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACATGATCTTTAGCGGCGTTTTTCCCACAAA
1 TTAGCGGCG-TTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTACCA-AAA
* *
26055853 CT-TCGCTAAAGAACATGACCT
64 ATGTCACTAAAGAACATGACCT
*
26055874 TTAGCAGCGTTTT
1 TTAGCGGCGTTTT
26055887 TTTATGAGAA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
85 12 0.14
86 69 0.81
87 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (85 bp):
TTAGCGGCGTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTACCAAAAAT
GTCACTAAAGAACATGACCT
Found at i:26060282 original size:19 final size:19
Alignment explanation
Indices: 26060241--26060283 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26060231 ATTGAACTTG
*
26060241 AAAATTGGACCTGAAATCG
1 AAAATTGGACCTGAAATCC
*
26060260 AAAATTGTACCTGAGAA-CC
1 AAAATTGGACCTGA-AATCC
26060279 AAAAT
1 AAAAT
26060284 CCGAGACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (19 bp):
AAAATTGGACCTGAAATCC
Found at i:26060611 original size:5 final size:5
Alignment explanation
Indices: 26060601--26060627 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26060591 TGAATTTAAT
26060601 ATTTA ATTTA ATTTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA AT
26060628 ATTTATGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:26060685 original size:16 final size:16
Alignment explanation
Indices: 26060662--26060718 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
26060652 TATTAAATTA
26060662 AATA-TTTATTTAGAT
1 AATATTTTATTTAGAT
* * **
26060677 AGTATTTTATTAATTT
1 AATATTTTATTTAGAT
*
26060693 AATA-TTTATCTAGAT
1 AATATTTTATTTAGAT
26060708 AATATTTTATT
1 AATATTTTATT
26060719 AATTTAATAC
Statistics
Matches: 30, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
15 14 0.47
16 16 0.53
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (16 bp):
AATATTTTATTTAGAT
Found at i:26060700 original size:31 final size:31
Alignment explanation
Indices: 26060652--26060727 Score: 116
Period size: 31 Copynumber: 2.4 Consensus size: 31
26060642 TAATATGAGA
* * *
26060652 TATTAAATTAAATATTTATTTAGATAGTATTT
1 TATT-AATTTAATATTTATCTAGATAATATTT
26060684 TATTAATTTAATATTTATCTAGATAATATTT
1 TATTAATTTAATATTTATCTAGATAATATTT
26060715 TATTAATTTAATA
1 TATTAATTTAATA
26060728 CTAATGTGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 37 0.90
32 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (31 bp):
TATTAATTTAATATTTATCTAGATAATATTT
Found at i:26060726 original size:16 final size:16
Alignment explanation
Indices: 26060679--26060727 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
26060669 ATTTAGATAG
26060679 TATTTTATTAATTTAA
1 TATTTTATTAATTTAA
26060695 TA-TTTATCTAGA--TAA
1 TATTTTAT-TA-ATTTAA
26060710 TATTTTATTAATTTAA
1 TATTTTATTAATTTAA
26060726 TA
1 TA
26060728 CTAATGTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
14 1 0.04
15 12 0.43
16 14 0.50
17 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TATTTTATTAATTTAA
Found at i:26069158 original size:3 final size:3
Alignment explanation
Indices: 26069150--26069206 Score: 69
Period size: 3 Copynumber: 19.0 Consensus size: 3
26069140 TCACTTGGTG
* * * *
26069150 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CGT CAC CAT CCT CCT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
*
26069198 CAT TAT CAT
1 CAT CAT CAT
26069207 TGGATACATC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.28, C:0.37, G:0.02, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:26070662 original size:39 final size:39
Alignment explanation
Indices: 26070607--26070690 Score: 161
Period size: 39 Copynumber: 2.2 Consensus size: 39
26070597 ATCCGTAACC
26070607 AATGT-TAAAAAAAATGAATATAGAATATAGTCAAGGAG
1 AATGTGTAAAAAAAATGAATATAGAATATAGTCAAGGAG
26070645 AATGTGTAAAAAAAATGAATATAGAATATAGTCAAGGAG
1 AATGTGTAAAAAAAATGAATATAGAATATAGTCAAGGAG
26070684 AATGTGT
1 AATGTGT
26070691 CTGAACAAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 5 0.11
39 40 0.89
ACGTcount: A:0.52, C:0.02, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGTGTAAAAAAAATGAATATAGAATATAGTCAAGGAG
Found at i:26075849 original size:2 final size:2
Alignment explanation
Indices: 26075842--26075867 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26075832 TTAACAGAAT
26075842 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
26075868 TTGCTCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26075936 original size:193 final size:193
Alignment explanation
Indices: 26075612--26076059 Score: 592
Period size: 193 Copynumber: 2.3 Consensus size: 193
26075602 AAATCTACAA
* * * *
26075612 AACACCAAAATCTTCGAAAAACGAATAGAAAATTAATAGAA-GCCGAA-AA-AGA-AGAGAGAGT
1 AACACCAAAATCTTCAAAAAACGAATAGAAAATTAACAGAATG-AGAAGAAGAGAGAGAGAGAGA
*
26075673 GATTGATTAAAACCAGTTGCGCTGGAGACGGCTCTTCCTTTCTGCTAGCCATTTTCTGAACAGGA
65 GATTGATCAAAACCAGTTGCGCTGGAGACGGCTCTTCCTTTCTGCTAGCCATTTTCTGAACAGGA
* *
26075738 AAATTAAA-ATAAATTAACATAAAATATACGTTAAATCACA-ATGTAT-TTCTTCCCTGTTTCTG
130 AAATTAAATATAAATTAACATAAAATATACATTAAATCACAGA-GTATATTCTTCCATGTTTCTG
*
26075800 AACACCAAAATCTTCTAAAAACGAATAGAAAATTAACAGAATGAGAGAGAGAGAGAGAGAGAGAG
1 AACACCAAAATCTTCAAAAAACGAATAGAAAATTAACAGAATGAGA-AGA-AGAGAGAGAGAGAG
* * *
26075865 AGATTGCTCGAAACCAGTTGCGCTGGAGACGAG-TCTTCCTTTCTGCTAGCCATTTTCTGAACAT
64 AGATTGATCAAAACCAGTTGCGCTGGAGACG-GCTCTTCCTTTCTGCTAGCCATTTTCTGAACAG
* *
26075929 GAAAATTAAATATAAATTAACGTAAAATATACATTAAATCACAGAGTATATTTTTCCATGTTTCT
128 GAAAATTAAATATAAATTAACATAAAATATACATTAAATCACAGAGTATATTCTTCCATGTTTCT
26075994 G
193 G
* * * * * *
26075995 GACACCAGAATCTTAAAAAAAACGAATAG-AAATTAACCGAATTCAAAAGAA-AGAGAGAGAGAG
1 AACACCAAAATCTT-CAAAAAACGAATAGAAAATTAACAGAA-TGAGAAGAAGAGAGAGAGAGAG
26076058 AG
64 AG
26076060 CACAACCAGT
Statistics
Matches: 229, Mismatches: 19, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
188 41 0.18
189 2 0.01
190 1 0.00
191 1 0.00
192 3 0.01
193 89 0.39
194 36 0.16
195 41 0.18
196 15 0.07
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (193 bp):
AACACCAAAATCTTCAAAAAACGAATAGAAAATTAACAGAATGAGAAGAAGAGAGAGAGAGAGAG
ATTGATCAAAACCAGTTGCGCTGGAGACGGCTCTTCCTTTCTGCTAGCCATTTTCTGAACAGGAA
AATTAAATATAAATTAACATAAAATATACATTAAATCACAGAGTATATTCTTCCATGTTTCTG
Found at i:26078762 original size:24 final size:24
Alignment explanation
Indices: 26078730--26078782 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
26078720 ATTAATATTG
* *
26078730 TTTAAATTTATCGCATATTATTAT
1 TTTAAATTTATCACATATAATTAT
*
26078754 TTTAAATTTATCATATATAATTAT
1 TTTAAATTTATCACATATAATTAT
26078778 TTTAA
1 TTTAA
26078783 GTTTTCATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTAAATTTATCACATATAATTAT
Found at i:26091263 original size:14 final size:14
Alignment explanation
Indices: 26091244--26091275 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
26091234 CAGAGCTCCA
26091244 AATTAAGATCTGTT
1 AATTAAGATCTGTT
26091258 AATTAAGATCTGTT
1 AATTAAGATCTGTT
26091272 AATT
1 AATT
26091276 TTTACTTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (14 bp):
AATTAAGATCTGTT
Found at i:26092063 original size:51 final size:50
Alignment explanation
Indices: 26092004--26092188 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 50
26091994 CCGGTTCACA
* * *
26092004 TAGTAGCCTGCACATAATACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGATACACG
* * * * * *
26092055 TAGTAGCCTGCACATAGTACTACACGCGTGATCGA-AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGATACACG
** * * *
26092106 TAGTAGCCAACACATAGTACTACACATGCGACC-TATCATTTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGATACACG
*
26092156 TAGGAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
26092189 TAGCAACTTC
Statistics
Matches: 105, Mismatches: 25, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
49 1 0.01
50 39 0.37
51 63 0.60
52 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGATACACG
Found at i:26092179 original size:101 final size:101
Alignment explanation
Indices: 26092002--26092186 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
26091992 ACCCGGTTCA
** * * *
26092002 CATAGTAGCCTGCACATAATACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCAACACATAATACTACACATGCGACCA-TATCATCCGATACACGTAGGAGCCTGCA
*
26092067 CATAGTACTACACGCGTGATCGAAGCTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* *
26092104 CATAGTAGCCAACACATAGTACTACACATGCGACC-TATCATTTCGATACACGTAGGAGCCTGCA
1 CATAGTAGCCAACACATAATACTACACATGCGACCATATCA-TCCGATACACGTAGGAGCCTGCA
26092168 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
26092187 CCTAGCAACT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 31 0.42
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCAACACATAATACTACACATGCGACCATATCATCCGATACACGTAGGAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:26094981 original size:42 final size:42
Alignment explanation
Indices: 26094901--26095014 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 42
26094891 CGTTTTCTCT
* **
26094901 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
26094943 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATATCACTCCG
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT---T--G
* *
26094990 ATGCCATATCCCAAATATGGTCTTA
1 ATGCCATAGCCCAACTATGGTCTTA
26095015 TACGGAAATC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 33 0.56
43 2 0.03
45 1 0.02
47 23 0.39
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:26097777 original size:51 final size:50
Alignment explanation
Indices: 26097719--26097903 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 50
26097709 CCAGTTCACA
* *
26097719 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TATCATCCGGTACACG
** * * * *
26097770 TAGTAGCCTGCACATAGTACTACACGCGTGATCGA-AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATATC-ATCCGGTACACG
* * * *
26097821 TAGTAGCCAGCACATAGTACTACACATGCGGCC-TATCATTTCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATATCA-TCCGGTACACG
* * *
26097871 TAGTAGCATTCACATAGTACTACACAGGTGACC
1 TAGTAGCCTGCACATAGTACTACACATGTGACC
26097904 TAGCAACTTC
Statistics
Matches: 106, Mismatches: 24, Indels: 9
0.76 0.17 0.06
Matches are distributed among these distances:
49 1 0.01
50 39 0.37
51 64 0.60
52 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATATCATCCGGTACACG
Found at i:26100656 original size:131 final size:132
Alignment explanation
Indices: 26100415--26100689 Score: 401
Period size: 131 Copynumber: 2.1 Consensus size: 132
26100405 AAACCATAAG
* * * *
26100415 TCCTGTCTCCTTATGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGAAGTA
1 TCCTGTCTCCCTAGGCAGTAGTGGAGCAAATCGAAGACGACGAATCTTATCTTCCCAAGGAAGTA
*
26100480 GGAAAACAGATTTAAGCCACTAGTACTATCTCCCTGAGCAACAGTGGAGTA-GTTGAAGATTGTA
66 GGAAAACAGATTTAAGCCACCAGTACTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTA
*
26100544 GA
131 AA
* * * *
26100546 TCCTATCTCCCTAGGCAGTAGTGGAGCAAATCTAAGACGACGAATCTTATCTTCTCAAGGTAGTA
1 TCCTGTCTCCCTAGGCAGTAGTGGAGCAAATCGAAGACGACGAATCTTATCTTCCCAAGGAAGTA
* * *
26100611 -GAGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGT
66 GGA-AAACAGATTTAAGCCACCAGTACTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGT
26100675 AAA
130 AAA
*
26100678 TCATGTCTCCCT
1 TCCTGTCTCCCT
26100690 GAGCAGCAGT
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.02
131 101 0.80
132 24 0.19
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (132 bp):
TCCTGTCTCCCTAGGCAGTAGTGGAGCAAATCGAAGACGACGAATCTTATCTTCCCAAGGAAGTA
GGAAAACAGATTTAAGCCACCAGTACTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGTA
AA
Found at i:26102475 original size:23 final size:24
Alignment explanation
Indices: 26102406--26102498 Score: 100
Period size: 24 Copynumber: 3.9 Consensus size: 24
26102396 ATTAATATTG
**
26102406 TTTAAATTTATCGCATATTATTAT
1 TTTAAATTTATCATATATTATTAT
*
26102430 TTTAAATTTATCATATATAATTAT
1 TTTAAATTTATCATATATTATTAT
*
26102454 TTTAAGTTT-TCAT-TCATTATTAT
1 TTTAAATTTATCATAT-ATTATTAT
* * *
26102477 TTCAAATTTATTATGTATTATT
1 TTTAAATTTATCATATATTATT
26102499 TTATATATCT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
22 1 0.02
23 18 0.31
24 38 0.66
25 1 0.02
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.57
Consensus pattern (24 bp):
TTTAAATTTATCATATATTATTAT
Found at i:26102673 original size:18 final size:19
Alignment explanation
Indices: 26102639--26102674 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26102629 ACAATAATAT
*
26102639 TTTATATGTATATATACAA
1 TTTATATGTATACATACAA
26102658 TTTATAT-TATACATACA
1 TTTATATGTATACATACA
26102675 TACATATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTATATGTATACATACAA
Found at i:26104574 original size:16 final size:16
Alignment explanation
Indices: 26104550--26104580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26104540 AATTCACCAT
26104550 TTGGCGAACTCTAAGA
1 TTGGCGAACTCTAAGA
*
26104566 TTGGTGAACTCTAAG
1 TTGGCGAACTCTAAG
26104581 GGTTTAGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
TTGGCGAACTCTAAGA
Found at i:26119378 original size:14 final size:14
Alignment explanation
Indices: 26119336--26119380 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
26119326 GTTTAGGTAG
*
26119336 GAAGCAAGAAAAGA
1 GAAGTAAGAAAAGA
*
26119350 AAAGTAAGAAAAGA
1 GAAGTAAGAAAAGA
*
26119364 GAAGTAGGAAAAGA
1 GAAGTAAGAAAAGA
26119378 GAA
1 GAA
26119381 TAAAGGATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.64, C:0.02, G:0.29, T:0.04
Consensus pattern (14 bp):
GAAGTAAGAAAAGA
Found at i:26124485 original size:50 final size:50
Alignment explanation
Indices: 26124360--26124656 Score: 251
Period size: 50 Copynumber: 5.8 Consensus size: 50
26124350 GATAATAACA
* * * ** * * **
26124360 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCT-TTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * * **
26124409 TGTCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * *
26124459 TGCCCATGCCATGTCCCAGACATGGTCTTAC--GGGACACCACTCATCA-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG--ACCTCTCAT-ATTGG
* * *
26124509 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* *
26124559 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T---TGG
* * *
26124615 TGCTAGTGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26124657 TTACCGAAAT
Statistics
Matches: 200, Mismatches: 35, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
48 3 0.01
49 34 0.17
50 119 0.60
51 1 0.00
52 3 0.01
53 1 0.00
56 39 0.19
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:26129427 original size:50 final size:50
Alignment explanation
Indices: 26129257--26129430 Score: 240
Period size: 50 Copynumber: 3.5 Consensus size: 50
26129247 TATCCTAGAT
** * * *
26129257 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCTATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCTATGTCCCAAAC
** * * *
26129307 ATGGTCTTACGGGGGACCTCCCATCTCGGTGCCAATCCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCTATGTCCCAAAC
* *
26129357 ATGGTCTTACATGAGACCTCTTATCTCGGTGCCAATGCTATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCTATGTCCCAAAC
26129407 ATGGTCTTACATGGGACCTCTCAT
1 ATGGTCTTACATGGGACCTCTCAT
26129431 AACCTCAATG
Statistics
Matches: 105, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 105 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCTATGTCCCAAAC
Found at i:26136958 original size:30 final size:30
Alignment explanation
Indices: 26136924--26136982 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26136914 TCATTGACTC
26136924 AAACTTTGGCAAAATTACA-TTTTTACCCCT
1 AAACTTTGGCAAAATTACACTTTTT-CCCCT
* * *
26136954 AAACTTTTGCATATTTACACTTTTTCCCC
1 AAACTTTGGCAAAATTACACTTTTTCCCC
26136983 AAAGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTTCCCCT
Found at i:26143284 original size:50 final size:50
Alignment explanation
Indices: 26143167--26143401 Score: 235
Period size: 50 Copynumber: 4.6 Consensus size: 50
26143157 AGATGTCAAA
* * * *
26143167 GCCATGTCCCAGACATGGTCTTACATGGGATCTTTCTTGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATAT-CGGTGCCAAT
* * * * *
26143216 GCCATATCCCAGATATGGTCTTACATGGGAGTTATCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATCGGTGCCAAT
* *
26143266 GCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGAG--CTCTCATATCGGTGCCAAT
* * *
26143316 GCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATAACCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCAT-A--TC---GGTGCCAAT
26143372 GCCATGTCCCAGACATGGTCTTACATGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
26143402 TTTCATTCCC
Statistics
Matches: 153, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
48 6 0.04
49 33 0.22
50 73 0.48
52 3 0.02
53 2 0.01
56 36 0.24
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATCGGTGCCAAT
Found at i:26147593 original size:43 final size:42
Alignment explanation
Indices: 26147505--26147713 Score: 269
Period size: 42 Copynumber: 5.0 Consensus size: 42
26147495 GCGTTTACAG
* * * *
26147505 AAAAAAACGTCGTTAAAGGTCATGTTCTTTAGCAGCGC-TACA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-A
* *
26147547 AAAAAAACGCCGCTAAAGATCATGTCCTTTAGCTGCGCTTAA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAA
* *
26147589 AAAAAGACGCAGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-A
*
26147632 AAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAA
* * *
26147674 ACAAAAACGCCACTACAA-ATCATGTTCTTTAGCGGTGCTT
1 AAAAAAACGCCGCTA-AAGATCATGTTCTTTAGCGGCGCTT
26147714 TCACTACAAA
Statistics
Matches: 150, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
42 105 0.70
43 45 0.30
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAA
Found at i:26147670 original size:85 final size:85
Alignment explanation
Indices: 26147518--26147756 Score: 288
Period size: 85 Copynumber: 2.8 Consensus size: 85
26147508 AAAACGTCGT
* * *
26147518 TAAAGGTCATGTTCTTTAGCAGCGC-TACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCTG
1 TAAAGATCATGTTCTTTAGCGGCGCTTACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCGG
26147582 CGCTTAAA-AAAAGACG-CAGC
66 CGCTTAAACAAAA-ACGCCA-C
* * *
26147602 TAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGG
1 TAAAGATCATGTTCTTTAGCGGCGCTTACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCGG
26147667 CGCTTAAACAAAAACGCCAC
66 CGCTTAAACAAAAACGCCAC
* * ** * * * * *
26147687 TACAA-ATCATGTTCTTTAGCGGTGCTTTCACTACAAACGCCGCTATAGAACATGACTTTTAGCG
1 TA-AAGATCATGTTCTTTAGCGGCGCTTACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCG
26147751 GCGCTT
65 GCGCTT
26147757 TTATAAAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
84 23 0.17
85 102 0.77
86 8 0.06
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (85 bp):
TAAAGATCATGTTCTTTAGCGGCGCTTACAAAAAAAACGCCGCTAAAGATCATGTCCTTTAGCGG
CGCTTAAACAAAAACGCCAC
Found at i:26148185 original size:21 final size:21
Alignment explanation
Indices: 26148161--26148229 Score: 111
Period size: 21 Copynumber: 3.3 Consensus size: 21
26148151 GCTTCTCTCG
26148161 CTGCTTCTCTCGTTGCAGCCT
1 CTGCTTCTCTCGTTGCAGCCT
*
26148182 CTGCTTCTCTCGTTGTAGCCT
1 CTGCTTCTCTCGTTGCAGCCT
* *
26148203 CTGCTTCCCTCGCTGCAGCCT
1 CTGCTTCTCTCGTTGCAGCCT
26148224 CTGCTT
1 CTGCTT
26148230 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.04, C:0.39, G:0.19, T:0.38
Consensus pattern (21 bp):
CTGCTTCTCTCGTTGCAGCCT
Found at i:26152728 original size:9 final size:9
Alignment explanation
Indices: 26152689--26153034 Score: 248
Period size: 9 Copynumber: 39.8 Consensus size: 9
26152679 TATGTATTAA
*
26152689 GTAAATTAT
1 GTAAGTTAT
26152698 GTAAGTTAT
1 GTAAGTTAT
26152707 GTATGAG-TA-
1 GTA--AGTTAT
26152716 -TAAGTTAT
1 GTAAGTTAT
26152724 GTAAGTTAT
1 GTAAGTTAT
*
26152733 GT-A-TTAA
1 GTAAGTTAT
*
26152740 GTAAGCTAT
1 GTAAGTTAT
*
26152749 GTAAGTTGT
1 GTAAGTTAT
26152758 GT-A-TTAT
1 GTAAGTTAT
26152765 GTAAGTTAT
1 GTAAGTTAT
26152774 GTAAGTTAT
1 GTAAGTTAT
** *
26152783 CAAAGTAAT
1 GTAAGTTAT
*
26152792 GTATGTTAT
1 GTAAGTTAT
*
26152801 ATAAG-T-T
1 GTAAGTTAT
26152808 GTAAGTTAT
1 GTAAGTTAT
*
26152817 -TATGTATTAT
1 GTAAG--TTAT
26152827 GTAAGTTAT
1 GTAAGTTAT
26152836 GTAAGTTAT
1 GTAAGTTAT
26152845 GTAAGTTAAAT
1 GTAAGTT--AT
26152856 GT-A-TTAT
1 GTAAGTTAT
*
26152863 GTAGGTTAT
1 GTAAGTTAT
*
26152872 GTAATTTGA-
1 GTAAGTT-AT
*
26152881 GTAAGATAT
1 GTAAGTTAT
*
26152890 TTAAGTTAT
1 GTAAGTTAT
*
26152899 GTAAGTTTT
1 GTAAGTTAT
26152908 GT-A-TTAT
1 GTAAGTTAT
26152915 GTAAGTTAT
1 GTAAGTTAT
*
26152924 GTAAGTAAT
1 GTAAGTTAT
26152933 GTAAGTTAAAT
1 GTAAGTT--AT
26152944 GT-A-TTAT
1 GTAAGTTAT
*
26152951 GTAGGTTAT
1 GTAAGTTAT
* *
26152960 GCAAGTTGT
1 GTAAGTTAT
*
26152969 GTAAGATAT
1 GTAAGTTAT
*
26152978 TTAAGTTAT
1 GTAAGTTAT
*
26152987 GTAAGTTTT
1 GTAAGTTAT
26152996 GT-A-TTAT
1 GTAAGTTAT
26153003 GTAAGTTAT
1 GTAAGTTAT
* *
26153012 GTATGCTAT
1 GTAAGTTAT
26153021 GT-A-TTAT
1 GTAAGTTAT
26153028 GTAAGTT
1 GTAAGTT
26153035 GTTATGTTAT
Statistics
Matches: 260, Mismatches: 47, Indels: 60
0.71 0.13 0.16
Matches are distributed among these distances:
6 2 0.01
7 40 0.15
8 17 0.07
9 179 0.69
10 9 0.03
11 13 0.05
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:26152864 original size:36 final size:35
Alignment explanation
Indices: 26152678--26153030 Score: 213
Period size: 34 Copynumber: 10.2 Consensus size: 35
26152668 TGATATATAA
* *
26152678 TTATGTA-TTAAGTAAATTATGTAAGTTATGTATGAG
1 TTATGTAGTTATGTAAGTTATGTAAGTTATGTA--AG
* *
26152714 -TAT-AAGTTATGTAAGTTATGT-A-TTAAGTAAG
1 TTATGTAGTTATGTAAGTTATGTAAGTTATGTAAG
* *
26152745 CTATGTAAGTTGTGT-A-TTATGTAAGTTATGTAAG
1 TTATGT-AGTTATGTAAGTTATGTAAGTTATGTAAG
** * * *
26152779 TTATCAAAGTAATGTATGTTATATAAG-T-TGTAAG
1 TTAT-GTAGTTATGTAAGTTATGTAAGTTATGTAAG
26152813 TTAT-TATGTATTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGTA-G--TTATGTAAGTTATGTAAGTTATGTAAG
* *
26152850 TTAAATGTA-TTATGTAGGTTATGTAATTTGA-GTAAG
1 TT--ATGTAGTTATGTAAGTTATGTAAGTT-ATGTAAG
* * *
26152886 ATATTTAAGTTATGTAAGTTTTGT-A-TTATGTAAG
1 TTATGT-AGTTATGTAAGTTATGTAAGTTATGTAAG
* *
26152920 TTATGTAAGTAATGTAAGTTAAATGT-A-TTATGTAGG
1 TTATGT-AGTTATGTAAGTT--ATGTAAGTTATGTAAG
* * * *
26152956 TTATGCAAGTTGTGTAAGATATTTAAGTTATGTAAG
1 TTATG-TAGTTATGTAAGTTATGTAAGTTATGTAAG
* * *
26152992 TTTTGTA-TTATGTAAGTTATGTATGCTATGT-A-
1 TTATGTAGTTATGTAAGTTATGTAAGTTATGTAAG
26153024 TTATGTA
1 TTATGTA
26153031 AGTTGTTATG
Statistics
Matches: 248, Mismatches: 43, Indels: 56
0.71 0.12 0.16
Matches are distributed among these distances:
31 2 0.01
32 16 0.06
33 11 0.04
34 85 0.34
35 36 0.15
36 85 0.34
37 9 0.04
39 2 0.01
40 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.45
Consensus pattern (35 bp):
TTATGTAGTTATGTAAGTTATGTAAGTTATGTAAG
Found at i:26152924 original size:88 final size:88
Alignment explanation
Indices: 26152716--26153023 Score: 362
Period size: 88 Copynumber: 3.5 Consensus size: 88
26152706 TGTATGAGTA
* * * *
26152716 TAAGTTATGTAAGTTATGTATTAAGTAAGCTATGTAAGTTGTGT-A-TT--ATGTAAGTTATGTA
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGT-A-TTATGTA
* * * * *
26152777 AGTTAT-CAAAG-TAATGTATGTTATA
64 GGTTATGC-AAGTTGA-GTAAGATATT
26152802 TAAG-T-TGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGT
1 TAAGTTATGTAAG-T-TT-TGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGT
* *
26152865 AGGTTATGTAATTTGAGTAAGATATT
63 AGGTTATGCAAGTTGAGTAAGATATT
*
26152891 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTAATGTAAGTTAAATGTATTATGTAGG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGG
*
26152956 TTATGCAAGTTGTGTAAGATATT
66 TTATGCAAGTTGAGTAAGATATT
* *
26152979 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTATGCTATGTA
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTA
26153024 TTATGTAAGT
Statistics
Matches: 193, Mismatches: 18, Indels: 20
0.84 0.08 0.09
Matches are distributed among these distances:
84 6 0.03
85 2 0.01
86 5 0.03
87 25 0.13
88 111 0.58
89 29 0.15
90 5 0.03
91 10 0.05
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.45
Consensus pattern (88 bp):
TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGG
TTATGCAAGTTGAGTAAGATATT
Found at i:26153031 original size:25 final size:25
Alignment explanation
Indices: 26152678--26153034 Score: 242
Period size: 25 Copynumber: 13.7 Consensus size: 25
26152668 TGATATATAA
* *
26152678 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
26152703 TTATGTATGAGTATAAGTTATGTAAG
1 TTATGTATTA-TGTAAGTTATGTAAG
* *
26152729 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
*
26152754 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
** * * *
26152779 TTATCAAAGTAATGTATGTTATATAAG
1 TTAT-GTA-TTATGTAAGTTATGTAAG
*
26152806 TTGTAAGTTATTATGT-A-TTATGTAAG
1 -T-TATG-TATTATGTAAGTTATGTAAG
26152832 TTATGTAAGTTATGTAAGTTAAATGT-A-
1 TTATGT-A-TTATGTAAGTT--ATGTAAG
*
26152859 TTATGTAGGTTATGTAATTTGA-GTAAG
1 TTATGTA--TTATGTAAGTT-ATGTAAG
* * *
26152886 ATATTTAAGTTATGTAAGTTTTGT-A-
1 TTATGT-A-TTATGTAAGTTATGTAAG
*
26152911 TTATGTAAGTTATGTAAGTAATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
* *
26152938 TTAAATGTATTATGTAGGTTATGCAAG
1 TT--ATGTATTATGTAAGTTATGTAAG
* * *
26152965 TTGTGTAAGATATTTAAGTTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
* *
26152992 TTTTGTATTATGTAAGTTATGTATG
1 TTATGTATTATGTAAGTTATGTAAG
*
26153017 CTATGTATTATGTAAGTT
1 TTATGTATTATGTAAGTT
26153035 GTTATGTTAT
Statistics
Matches: 261, Mismatches: 48, Indels: 46
0.74 0.14 0.13
Matches are distributed among these distances:
23 1 0.00
24 4 0.02
25 109 0.42
26 38 0.15
27 89 0.34
28 9 0.03
29 11 0.04
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.45
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:26154809 original size:6 final size:6
Alignment explanation
Indices: 26154800--26154831 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
26154790 AGCAGAGAGC
*
26154800 GACGGT GACGGT GACGGT GACGGT GACAGT GA
1 GACGGT GACGGT GACGGT GACGGT GACGGT GA
26154832 TGCAGTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.47, T:0.16
Consensus pattern (6 bp):
GACGGT
Found at i:26156184 original size:7 final size:7
Alignment explanation
Indices: 26156172--26156213 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
26156162 ACTAAAGTGG
26156172 CCTAAAC
1 CCTAAAC
26156179 CCTAAAC
1 CCTAAAC
*
26156186 CCCAAAC
1 CCTAAAC
*
26156193 CTTAAAC
1 CCTAAAC
26156200 CCTAAAC
1 CCTAAAC
*
26156207 CCAAAAC
1 CCTAAAC
26156214 ACCAAAACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.45, C:0.43, G:0.00, T:0.12
Consensus pattern (7 bp):
CCTAAAC
Found at i:26156198 original size:14 final size:14
Alignment explanation
Indices: 26156175--26156219 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
26156165 AAAGTGGCCT
26156175 AAACCCTAAACCCC
1 AAACCCTAAACCCC
* *
26156189 AAACCTTAAACCCT
1 AAACCCTAAACCCC
* *
26156203 AAACCCAAAACACC
1 AAACCCTAAACCCC
26156217 AAA
1 AAA
26156220 ACCAACATCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (14 bp):
AAACCCTAAACCCC
Found at i:26156200 original size:21 final size:21
Alignment explanation
Indices: 26156174--26156213 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26156164 TAAAGTGGCC
*
26156174 TAAACCCTAAACCCCAAACCT
1 TAAACCCTAAACCCAAAACCT
26156195 TAAACCCTAAACCCAAAAC
1 TAAACCCTAAACCCAAAAC
26156214 ACCAAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.12
Consensus pattern (21 bp):
TAAACCCTAAACCCAAAACCT
Found at i:26156476 original size:49 final size:47
Alignment explanation
Indices: 26156365--26156476 Score: 118
Period size: 49 Copynumber: 2.3 Consensus size: 47
26156355 ACAAACTCCC
* **
26156365 AAACCTTAAACCAAAAACACTAAACTTACATCGTAAACCCTAAACCCT
1 AAACC-TAAACCAAAAACAATAAACTTACATAATAAACCCTAAACCCT
* * *
26156413 AAA-CTACAATCCAAAAATAATAAACATTATATAATGAACCCTAATACCCT
1 AAACCTA-AA-CCAAAAACAATAAAC-TTACATAATAAACCCTAA-ACCCT
26156463 AAACCTAAACCAAA
1 AAACCTAAACCAAA
26156477 TATGACAAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
46 2 0.04
47 3 0.06
48 16 0.30
49 19 0.36
50 10 0.19
51 3 0.06
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.20
Consensus pattern (47 bp):
AAACCTAAACCAAAAACAATAAACTTACATAATAAACCCTAAACCCT
Found at i:26156502 original size:16 final size:17
Alignment explanation
Indices: 26156483--26156517 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26156473 CAAATATGAC
26156483 AAACTA-AATATATAAT
1 AAACTACAATATATAAT
*
26156499 AAACTACATTATATAAT
1 AAACTACAATATATAAT
26156516 AA
1 AA
26156518 CCTAGCGACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (17 bp):
AAACTACAATATATAAT
Found at i:26156778 original size:114 final size:114
Alignment explanation
Indices: 26156537--26157327 Score: 904
Period size: 114 Copynumber: 6.9 Consensus size: 114
26156527 GCTTCCCAAA
* * * * * * * * *
26156537 ACGCGCCGCTAATAATATGTTTTCGCGGTGTTTTCCCGTAAGCGCCACTACTGCTAGTATACATC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * * ** *
26156602 AAGTCCAAATCGCTGCGTTTTTGTTAATATATTTTGCGGCGCTTTCCACC
66 AAGACCAAA-CTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * * *
26156652 AAGCGCCACTAATACTATGCATTAGCGGCGTTTTCCCATAAGTGCCACTAATTCTAATATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * *
26156717 AAGACCAAACTCTACGTTTTGGTTAAGATATTTTGCGGCGCTTCTGACG
66 AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * **
26156766 ACGCGCCGCTAATACTATGCATTAGCGGCATTTTCGAATAAGCGCCACTAATTCTAATATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* *
26156831 AAGACCAAACTCTGCGTTTTGGTTAAGATATGTTGCGGCGCTTTTGACG
66 AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * *
26156880 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCAATAAGCGCTACTAATTCTAGTATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * *
26156945 AAGACCAAACTTTGCATTTTGGTTAAGATATGTTGTGGCGCTTTTTACA
66 AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* * * *
26156994 ACACGCCACTAATACTATGCGTTAGCGGCATTTTCCCATAAGCGCCACTAATTCTAATATACCTC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * *
26157059 AAGACCAAAATCTGCATTTTGGTTAATATATTTTGCGGCGCTTTTCACA
66 AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
** * ** * * * *
26157108 AATCGCTGCTAATACT-TGCTTTAGCGGCGTTTTTTCATATGCACCACTAATTCTAATATACATA
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * *
26157172 AAGACCAAACTCTGCATTTTGGTTAAGATATGTTGCGGCGCGTTTGGCG
66 AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
* ** * * * * *
26157221 A-TCGATGCTAATACT-TTCTTTAGCGGCGTTTTCCTATAATCGCCACTAATTCTAGTATACATC
1 ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
* * * * *
26157284 TAGACCAAAACGCTACATTTTGGTTAAGAGATTTTGTGGCGCTT
66 AAGACC-AAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTT
26157328 GATAGTAAAC
Statistics
Matches: 585, Mismatches: 90, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
112 57 0.10
113 114 0.19
114 354 0.61
115 60 0.10
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (114 bp):
ACGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTC
AAGACCAAACTCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTGACG
Found at i:26158400 original size:10 final size:10
Alignment explanation
Indices: 26158387--26158415 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
26158377 TTTTTTTCCA
26158387 TTTTAGTTTT
1 TTTTAGTTTT
26158397 TTTTAGTTTT
1 TTTTAGTTTT
26158407 TTTTA-TTTT
1 TTTTAGTTTT
26158416 GGGTAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.10, C:0.00, G:0.07, T:0.83
Consensus pattern (10 bp):
TTTTAGTTTT
Found at i:26159024 original size:15 final size:15
Alignment explanation
Indices: 26159004--26159034 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26158994 AAAACAACAT
26159004 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26159019 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26159034 A
1 A
26159035 CTTACATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:26163379 original size:15 final size:15
Alignment explanation
Indices: 26163355--26163385 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26163345 AAAACAACAT
26163355 AACTCCTGACCTTTC
1 AACTCCTGACCTTTC
*
26163370 AACTCTTGACCTTTC
1 AACTCCTGACCTTTC
26163385 A
1 A
26163386 CTTACATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.35
Consensus pattern (15 bp):
AACTCCTGACCTTTC
Found at i:26164269 original size:14 final size:14
Alignment explanation
Indices: 26164240--26164283 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
26164230 TCCTGATTGG
* *
26164240 TTTATTGATTTTTT
1 TTTATTTATTTCTT
* *
26164254 TTTGTTTATTTGTT
1 TTTATTTATTTCTT
26164268 TTTATTTATTTCTT
1 TTTATTTATTTCTT
26164282 TT
1 TT
26164284 CATTGTTTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.80
Consensus pattern (14 bp):
TTTATTTATTTCTT
Found at i:26164301 original size:31 final size:28
Alignment explanation
Indices: 26164240--26164303 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 28
26164230 TCCTGATTGG
*
26164240 TTTATTGATTTTTTTTTGTTTATTTGTT
1 TTTATTGATTTTTTTTTGTTTATTTATT
* *
26164268 TTTATTTATTTCTTTTCATTGTTTGTTTATT
1 TTTATTGATTT-TTTT--TTGTTTATTTATT
26164299 TTTAT
1 TTTAT
26164304 CTCTTCAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 10 0.33
29 4 0.13
31 16 0.53
ACGTcount: A:0.12, C:0.03, G:0.08, T:0.77
Consensus pattern (28 bp):
TTTATTGATTTTTTTTTGTTTATTTATT
Found at i:26167717 original size:22 final size:22
Alignment explanation
Indices: 26167674--26167719 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26167664 AATTATGCTT
*
26167674 TTGCGGGAAAATAAATGCATAA
1 TTGCGGGAAAATAAATGAATAA
*
26167696 TTGCTGGAAAATAAAAT-AATAA
1 TTGCGGGAAAAT-AAATGAATAA
26167718 TT
1 TT
26167720 ATTGAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (22 bp):
TTGCGGGAAAATAAATGAATAA
Found at i:26167933 original size:277 final size:279
Alignment explanation
Indices: 26167400--26167954 Score: 1006
Period size: 277 Copynumber: 2.0 Consensus size: 279
26167390 ATAAATTCAT
26167400 AAAATAAATGCATAATTGCTGGAAAATAACAATAATAATAATTATTGAAATATTGTATTTATTTA
1 AAAATAAATGCATAATTGCTGGAAAAT-A-AATAATAATAATTATTGAAATATTGTATTTATTTA
26167465 CCGTAAACTTACCTCGGTACAAAATTTGACCAAATCTACCAACTTAGTCCTCTATCTATTTCTTT
64 CCGTAAACTTACCTCGGTACAAAATTTGACCAAATCTACCAACTTAGTCCTCTATCTATTTCTTT
* * *
26167530 CCCCGGTCTAACTCTAAATTTCGTTCTTCTTGATATAAAATAGAAAATTTAACTCATTTAATACT
129 CCCCAGTCTAACTCCAAATTTCGTTCTTCTTGATATAAAATAGAAAATTTAACTCATTTAAAACT
* *
26167595 CACATTTATCAAAACAGCCCTCGACTCTAACTTTGGAAAAATTACGATTTTGCCCCTACACTTTT
194 CACATTTATCAAAACAGCCCTCGACTCTAACTTTGGAAAAATTACAATTTTGCCACTACACTTTT
26167660 ACATAATTATGCTTTTGCGGG
259 ACATAATTATGCTTTTGCGGG
26167681 AAAATAAATGCATAATTGCTGGAAAAT-AA-AATAATAATTATTGAAATATTGTATTTATTTACC
1 AAAATAAATGCATAATTGCTGGAAAATAAATAATAATAATTATTGAAATATTGTATTTATTTACC
*
26167744 GTAAACTTACCTCGGTACAAAATTTGACCAAATCTACCAACTTAGTCCTCTATCTTTTTCTTTCC
66 GTAAACTTACCTCGGTACAAAATTTGACCAAATCTACCAACTTAGTCCTCTATCTATTTCTTTCC
* *
26167809 CCAGTCTAACTCCGAATTTCGTTCTTCTTGATCTAAAATAGAAAATTTAACTCATTTAAAACTCA
131 CCAGTCTAACTCCAAATTTCGTTCTTCTTGATATAAAATAGAAAATTTAACTCATTTAAAACTCA
26167874 CATTTATCAAAACAGCCCTCGACTCTAACTTTGGAAAAATTACAATTTTGCCACTACACTTTTAC
196 CATTTATCAAAACAGCCCTCGACTCTAACTTTGGAAAAATTACAATTTTGCCACTACACTTTTAC
26167939 ATAATTATGCTTTTGC
261 ATAATTATGCTTTTGC
26167955 CCCAAAGTTT
Statistics
Matches: 266, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
277 237 0.89
278 2 0.01
281 27 0.10
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (279 bp):
AAAATAAATGCATAATTGCTGGAAAATAAATAATAATAATTATTGAAATATTGTATTTATTTACC
GTAAACTTACCTCGGTACAAAATTTGACCAAATCTACCAACTTAGTCCTCTATCTATTTCTTTCC
CCAGTCTAACTCCAAATTTCGTTCTTCTTGATATAAAATAGAAAATTTAACTCATTTAAAACTCA
CATTTATCAAAACAGCCCTCGACTCTAACTTTGGAAAAATTACAATTTTGCCACTACACTTTTAC
ATAATTATGCTTTTGCGGG
Found at i:26172125 original size:40 final size:40
Alignment explanation
Indices: 26172081--26172342 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
26172071 GCTCCTCGTT
* *
26172081 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26172121 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26172161 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26172200 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26172239 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26172278 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
26172319 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26172343 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26177811 original size:50 final size:50
Alignment explanation
Indices: 26177695--26177884 Score: 272
Period size: 50 Copynumber: 3.8 Consensus size: 50
26177685 TGATAATAAC
* * *
26177695 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATCTCG
* * **
26177746 ATGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACTTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCG
* * * *
26177796 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGTCCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCG
26177846 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
26177885 CTCTTTACCC
Statistics
Matches: 121, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 88 0.73
51 33 0.27
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCG
Found at i:26177873 original size:100 final size:101
Alignment explanation
Indices: 26177696--26177877 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 101
26177686 GATAATAACA
** *
26177696 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGATGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGATGCCAATGCCATGT
26177761 CCCAAACATGGTCTTACGGGGGACTTCTCATCTCGG
66 CCCAAACATGGTCTTACGGGGGACTTCTCATCTCGG
* *
26177797 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGG-TCCTCTCATCTCGATGCCAATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGATGCCAATGCCATGT
*
26177861 CCCAGACATGGTCTTAC
66 CCCAAACATGGTCTTAC
26177878 ATGGGACCTC
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
100 40 0.53
101 35 0.47
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.26
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGATGCCAATGCCATGT
CCCAAACATGGTCTTACGGGGGACTTCTCATCTCGG
Found at i:26180873 original size:16 final size:16
Alignment explanation
Indices: 26180852--26180883 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26180842 GTTTTGTCGC
*
26180852 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
26180868 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
26180884 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:26181176 original size:51 final size:51
Alignment explanation
Indices: 26181111--26181301 Score: 221
Period size: 51 Copynumber: 3.8 Consensus size: 51
26181101 CCAGTTCACA
*
26181111 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
* * * * *
26181162 TAGTAGTCTTCACATAGTACTACACACGTGATCGA--AGCTATCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATACACG
* * *
26181213 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-T-CTAGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGA-TACACG
*
26181263 TAGTAGCCTGCACATAGTACCACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
26181302 TTCACTTTCA
Statistics
Matches: 116, Mismatches: 17, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
49 5 0.04
50 39 0.34
51 69 0.59
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
Found at i:26181331 original size:101 final size:102
Alignment explanation
Indices: 26181104--26181293 Score: 278
Period size: 102 Copynumber: 1.9 Consensus size: 102
26181094 AATGATACCA
* * *
26181104 GTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGT
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGC
* * *
26181169 CTTCACATAGTACTACACACGTGATCGAAGCTATCCG
66 CTGCACATAGTACCACACACGTGATCCAAGCTATCCG
*
26181206 GTACACATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTAG-TACACGTAGTA
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATC-AGATACACGTAGTA
26181268 GCCTGCACATAGTACCACACACGTGA
64 GCCTGCACATAGTACCACACACGTGA
26181294 CCATCACTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
101 36 0.45
102 40 0.50
103 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGC
CTGCACATAGTACCACACACGTGATCCAAGCTATCCG
Done.