Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 95 of 213
Found at i:26590073 original size:43 final size:43
Alignment explanation
Indices: 26589900--26590189 Score: 175
Period size: 43 Copynumber: 6.7 Consensus size: 43
26589890 GTGAAAGCGG
* * * * **
26589900 CGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTACTAGAAGTGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
* * * * * **
26589943 CACTAAAGATCAGGGTCTTTAACGGCGTTTTTCCGAGAGTCGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
* * * * * * * *
26589986 TGTTGAAGATCAGGGTCTTTAGCAGCGTTTTTGCGACAAGCGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
*
26590029 CGCTAAAGATTAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
* * ** ** * * ***
26590072 CGCAAAAGACCCTGAACTATAGCGGCGCCTCGACCACAAACGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
* **** *
26590115 CACTAAAGATCTTAATCTTTAGCGGCGCTTTCCCCACAAACGC
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
* * * * * *
26590158 CGCGAAAGACCATGATCTTTAGGGGCACTTTT
1 CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTT
26590190 TCCATAAATG
Statistics
Matches: 190, Mismatches: 57, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
43 190 1.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (43 bp):
CGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTCCCACAAACGC
Found at i:26590209 original size:86 final size:86
Alignment explanation
Indices: 26590044--26590231 Score: 198
Period size: 86 Copynumber: 2.2 Consensus size: 86
26590034 AAGATTAGGG
* * *
26590044 TCTTTAGCGGCGCTTTTCCCACAAACGCCGCAAAAGACCCTGAACTATAGCGGCGCCTCGACCAC
1 TCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAAAGACCATGAACTATAGCGGCACCTCGACCAC
* * *
26590109 AAACGCCACTAAAG-ATCTTAA
66 AAACGACACAAAAGAACCTT-A
* * * * * *** *
26590130 TCTTTAGCGGCGCTTTCCCCACAAACGCCGCGAAAGACCATGATCTTTAGGGGCACTTTTTCCAT
1 TCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAAAGACCATGAACTATAGCGGCACCTCGACCAC
* *
26590195 AAATGACGCAAAAGAACCTTA
66 AAACGACACAAAAGAACCTTA
*
26590216 TCTTTAGCGGTGCTTT
1 TCTTTAGCGGCGCTTT
26590232 TACCAAAGAC
Statistics
Matches: 83, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
86 79 0.95
87 4 0.05
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (86 bp):
TCTTTAGCGGCGCTTTCCCCACAAACGCCGCAAAAGACCATGAACTATAGCGGCACCTCGACCAC
AAACGACACAAAAGAACCTTA
Found at i:26590629 original size:21 final size:21
Alignment explanation
Indices: 26590603--26590736 Score: 151
Period size: 21 Copynumber: 6.4 Consensus size: 21
26590593 TTTAACGCTA
26590603 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
26590624 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* **
26590645 CTCTGCTTCCCTCGTTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
26590666 CTTTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
26590687 CTGTACTTCTCTCGCTACCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
26590708 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
26590729 ATCTGCTT
1 CTCTGCTT
26590737 TAAGCTACTG
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 96 1.00
ACGTcount: A:0.05, C:0.43, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:26590798 original size:66 final size:66
Alignment explanation
Indices: 26590707--26590873 Score: 185
Period size: 66 Copynumber: 2.5 Consensus size: 66
26590697 CTCGCTACCG
* *
26590707 CCTCTGCTTCTCTT-GCTGCCGCATCTGCTTTAAGCTACT-GCTGGAGTTCTTCATACTTTCGTT
1 CCTCAGCTTCT-TTCGCTGCTGCATCTGCTTTAAG-TACTAGCTGGAGTTCTTCATACTTTCGTT
26590770 GAA
64 GAA
* ** * **
26590773 CCTCAGCTTCTTTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATTTTTTTTGA
1 CCTCAGCTTCTTTCGCTGCTGCATCTGCTTTAAGTACTAGCTGGAGTTCTTCATACTTTCGTTGA
26590838 A
66 A
* * * * *
26590839 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGT
1 CCTCAGCTTCTTTCGCTGCTGCATCTGCTTTAAGT
26590874 TGTGTAATTT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
65 4 0.05
66 81 0.95
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTTTCGCTGCTGCATCTGCTTTAAGTACTAGCTGGAGTTCTTCATACTTTCGTTGA
A
Found at i:26596311 original size:16 final size:16
Alignment explanation
Indices: 26596290--26596323 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26596280 ATAGTTAAGC
26596290 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
26596306 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
26596322 TA
1 TA
26596324 CCCAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:26596355 original size:25 final size:25
Alignment explanation
Indices: 26596304--26596359 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26596294 TAAGTTATGT
* *
26596304 ATTATGTAAGTTATTTATTACCCAA
1 ATTATGTAAGTTATGTATTACCAAA
* **
26596329 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATGTATTACCAAA
26596354 ATTATG
1 ATTATG
26596360 CTATGTAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTACCAAA
Found at i:26596373 original size:9 final size:9
Alignment explanation
Indices: 26596361--26596596 Score: 126
Period size: 9 Copynumber: 27.3 Consensus size: 9
26596351 AAAATTATGC
26596361 TATGTAAGT
1 TATGTAAGT
26596370 TATGTAAGT
1 TATGTAAGT
* *
26596379 CATATAAGT
1 TATGTAAGT
26596388 TATGTAAG-
1 TATGTAAGT
26596396 T-TGTAAGT
1 TATGTAAGT
*
26596404 GATGTAAGT
1 TATGTAAGT
*
26596413 TAT-TTA-T
1 TATGTAAGT
* *
26596420 TATGAAAAT
1 TATGTAAGT
*
26596429 TAAGTAAGT
1 TATGTAAGT
*
26596438 TATGTAATT
1 TATGTAAGT
*
26596447 TACG-AA-T
1 TATGTAAGT
* **
26596454 AAT-TAAAAA
1 TATGT-AAGT
*
26596463 AATGTAAGT
1 TATGTAAGT
26596472 TATGTAAG-
1 TATGTAAGT
26596480 T-TGTAAGT
1 TATGTAAGT
26596488 TATGTAAG-
1 TATGTAAGT
26596496 T-TGTAAGT
1 TATGTAAGT
26596504 TATGTAAGT
1 TATGTAAGT
*
26596513 TATGTATA-A
1 TATGTA-AGT
26596522 TAT-TAA-T
1 TATGTAAGT
** *
26596529 TAACTAACT
1 TATGTAAGT
*
26596538 TATGTAATT
1 TATGTAAGT
* *
26596547 TAAGTATAATAT
1 T-A-TGTAA-GT
26596559 TAATGTAAGT
1 T-ATGTAAGT
26596569 TATGTAAG-
1 TATGTAAGT
26596577 T-TGTAAGT
1 TATGTAAGT
26596585 TATGTAAGT
1 TATGTAAGT
26596594 TAT
1 TAT
26596597 TTATTATGAA
Statistics
Matches: 176, Mismatches: 31, Indels: 40
0.71 0.13 0.16
Matches are distributed among these distances:
7 33 0.19
8 19 0.11
9 107 0.61
10 5 0.03
11 8 0.05
12 4 0.02
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (9 bp):
TATGTAAGT
Found at i:26596486 original size:16 final size:16
Alignment explanation
Indices: 26596465--26596594 Score: 103
Period size: 16 Copynumber: 8.1 Consensus size: 16
26596455 ATTAAAAAAA
26596465 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596481 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596497 TGTAAGTTATGTAAGTT
1 TGTAAGTTATGTAAG-T
*
26596514 ATGTATA-ATAT-TAA-T
1 -TGTA-AGTTATGTAAGT
* *
26596529 TAACTAACTTATGTAA-T
1 T--GTAAGTTATGTAAGT
*
26596546 T-TAAGTATAATATTAA--
1 TGTAAGT-T-AT-GTAAGT
26596562 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596578 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596594 T
1 T
26596595 ATTTATTATG
Statistics
Matches: 95, Mismatches: 6, Indels: 26
0.75 0.05 0.20
Matches are distributed among these distances:
14 8 0.08
15 5 0.05
16 57 0.60
17 17 0.18
18 7 0.07
19 1 0.01
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:26596492 original size:25 final size:25
Alignment explanation
Indices: 26596361--26596596 Score: 90
Period size: 25 Copynumber: 9.5 Consensus size: 25
26596351 AAAATTATGC
*
26596361 TATGTAAGTTATGTAAGTCATATAAGT
1 TATGTAAGTTATGTAAGT--TGTAAGT
26596388 TATGTAAG-T-TGTAAGTGATGTAAGT
1 TATGTAAGTTATGTAAGT--TGTAAGT
* * *
26596413 TAT-TTA-TTATGAAAATTAAGTAAGT
1 TATGTAAGTTATGTAAGTT--GTAAGT
* * * **
26596438 TATGTAATTTACGAATAA-TT-AAAAA
1 TATGTAAGTTATG--TAAGTTGTAAGT
*
26596463 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAAGTTATGTAAGTTGTAAGT
26596488 TATGTAAG-T-TGTAAGTTATGTAAGT
1 TATGTAAGTTATGTAAG-T-TGTAAGT
* * *
26596513 TATGTATA-ATAT-TAA-TTAACTAACT
1 TATGTA-AGTTATGTAAGTT--GTAAGT
* *
26596538 TATGTAA--T-T-TAAG-TATAATAT
1 TATGTAAGTTATGTAAGTTGTAA-GT
26596559 TAATGTAAGTTATGTAAGTTGTAAGT
1 T-ATGTAAGTTATGTAAGTTGTAAGT
26596585 TATGTAAGTTAT
1 TATGTAAGTTAT
26596597 TTATTATGAA
Statistics
Matches: 160, Mismatches: 24, Indels: 52
0.68 0.10 0.22
Matches are distributed among these distances:
20 3 0.02
21 2 0.01
22 11 0.07
23 12 0.08
24 10 0.06
25 87 0.54
26 14 0.09
27 17 0.11
28 2 0.01
29 2 0.01
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (25 bp):
TATGTAAGTTATGTAAGTTGTAAGT
Found at i:26596716 original size:22 final size:22
Alignment explanation
Indices: 26596691--26596736 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
26596681 TAACTAACTT
*
26596691 ATGTAATTTAAGTATAATATTA
1 ATGTAAGTTAAGTATAATATTA
*
26596713 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTAAGTATAATATTA
26596735 AT
1 AT
26596737 TAACAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (22 bp):
ATGTAAGTTAAGTATAATATTA
Found at i:26596720 original size:56 final size:56
Alignment explanation
Indices: 26596658--26597136 Score: 559
Period size: 56 Copynumber: 8.2 Consensus size: 56
26596648 TTATGTAAGT
* * *
26596658 TGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
**
26596714 TGTAAGTTATGTATAATATTAATTAACAAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
26596770 TGTAATTAGTTATGTAATTTATGTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TGT-A--AGTTATGT-A--TA---ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
* * *** * **
26596835 TGTAAGTTATGTA-ATTTATGAA-TAATTATAAAAATGTAAGTTATGTAAGTTGTAAGTT-A
1 TGTAAGTTATGTATA-ATATTAATTAATTA-AGTTATGTAATTTATGT-A-TAAT-A-TTAA
*
26596894 TGTAAGTTATGTATTATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
* ** * *
26596950 TGTAAGCAATGTAATTTATGTGTAATAATTAATTAAGTTATGTAATTTATGTATAATACTAA
1 TGTAAG---T-T-ATGTAT-AATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
26597012 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
*
26597068 TGCAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
*
26597124 TGTAACTTATGTA
1 TGTAAGTTATGTA
26597137 ATTTATGTAT
Statistics
Matches: 366, Mismatches: 34, Indels: 46
0.82 0.08 0.10
Matches are distributed among these distances:
55 8 0.02
56 187 0.51
57 9 0.02
58 5 0.01
59 43 0.12
60 10 0.03
61 6 0.02
62 55 0.15
64 1 0.00
65 42 0.11
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (56 bp):
TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
Found at i:26596752 original size:177 final size:178
Alignment explanation
Indices: 26596383--26596736 Score: 510
Period size: 177 Copynumber: 2.0 Consensus size: 178
26596373 GTAAGTCATA
26596383 TAAGTTATGTAAGTTGTAAGTGATGTAAGTTATTTATTATGAAAATTAAGTAAGTTATGTAATTT
1 TAAGTTATGTAAGTTGTAAGTGATGTAAGTTATTTATTATGAAAATT-A-TAAGTTATGTAATTT
* ** *
26596448 ACGAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTGTAAGTTATGTAAGT
64 ACGAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTAAATTGTAAGTTAACTAACT
*
26596513 TATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATG
129 TATG-ATAATATTAATTAACTAACTTATGTAAGTTAAGTATAATATTAATG
*
26596564 TAAGTTATGTAAGTTGTAAGTTATGTAAGTTATTTATTATGAAAA-T-TAAGTTATGTAATTTAC
1 TAAGTTATGTAAGTTGTAAGTGATGTAAGTTATTTATTATGAAAATTATAAGTTATGTAATTTAC
26596627 GAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATAT-TAA-TTAACTAACT
66 GAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTA-AAT-TGTAAGTTAACTAACT
*
26596690 TATG-TAAT-TTAAGTATAA-T-A-TTAATGTAAGTTATGTATAATATTAAT
129 TATGATAATATTAA-T-TAACTAACTT-ATGTAAGTTAAGTATAATATTAAT
26596737 TAACAAAGTT
Statistics
Matches: 161, Mismatches: 7, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
173 2 0.01
174 27 0.17
175 6 0.04
176 3 0.02
177 72 0.45
178 5 0.03
179 1 0.01
180 1 0.01
181 44 0.27
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.43
Consensus pattern (178 bp):
TAAGTTATGTAAGTTGTAAGTGATGTAAGTTATTTATTATGAAAATTATAAGTTATGTAATTTAC
GAATAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTAAATTGTAAGTTAACTAACTTA
TGATAATATTAATTAACTAACTTATGTAAGTTAAGTATAATATTAATG
Found at i:26596758 original size:34 final size:34
Alignment explanation
Indices: 26596713--26596860 Score: 186
Period size: 31 Copynumber: 4.5 Consensus size: 34
26596703 TATAATATTA
* *
26596713 ATGTAAGTTATGTATAATATTAAT-TAACAAAGTT
1 ATGTAATTTATGTATAATATTAATGTAA-TAAGTT
*
26596747 ATGTAATTTATGTATAATATTAATGTAATTAGTT
1 ATGTAATTTATGTATAATATTAATGTAATAAGTT
26596781 ATGTAATTTATG--T-ATATTAAT-TAATTAAGTT
1 ATGTAATTTATGTATAATATTAATGTAA-TAAGTT
26596812 ATGTAATTTATGTATAATATTAATG---TAAGTT
1 ATGTAATTTATGTATAATATTAATGTAATAAGTT
*
26596843 ATGTAATTTATGAATAAT
1 ATGTAATTTATGTATAAT
26596861 TATAAAAATG
Statistics
Matches: 103, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
30 3 0.03
31 48 0.47
32 1 0.01
33 1 0.01
34 47 0.46
35 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (34 bp):
ATGTAATTTATGTATAATATTAATGTAATAAGTT
Found at i:26596759 original size:9 final size:9
Alignment explanation
Indices: 26596745--26597145 Score: 89
Period size: 9 Copynumber: 41.8 Consensus size: 9
26596735 ATTAACAAAG
26596745 TTATGTAAT
1 TTATGTAAT
26596754 TTATGTATAAT
1 TTATG--TAAT
26596765 ATTAATGTAATT
1 -TT-ATGTAA-T
26596777 AGTTATGTAAT
1 --TTATGTAAT
26596788 TTATGT-A-
1 TTATGTAAT
26596795 -TAT-TAAT
1 TTATGTAAT
* *
26596802 TAAT-TAAG
1 TTATGTAAT
26596810 TTATGTAAT
1 TTATGTAAT
26596819 TTATGTATAAT
1 TTATG--TAAT
*
26596830 ATTAATGTAAG
1 -TT-ATGTAAT
26596841 TTATGTAAT
1 TTATGTAAT
26596850 TTATGAATAAT
1 TTATG--TAAT
*
26596861 TATAAAAATGTAAG
1 T-T----ATGTAAT
26596875 TTATGTAA-
1 TTATGTAAT
* *
26596883 GT-TGTAAG
1 TTATGTAAT
*
26596891 TTATGTAAG
1 TTATGTAAT
26596900 TTATGT-AT
1 TTATGTAAT
26596908 TATAT-TAAT
1 T-TATGTAAT
* *
26596917 TAAT-TAAG
1 TTATGTAAT
26596925 TTATGTAAT
1 TTATGTAAT
26596934 TTATGTATAAT
1 TTATG--TAAT
*
26596945 ATTAATGTAAG
1 -TT-ATGTAAT
**
26596956 CAATGTAAT
1 TTATGTAAT
26596965 TTATGTGTAAT
1 TTA--TGTAAT
*
26596976 AATTAAT-TAAG
1 --TT-ATGTAAT
26596987 TTATGTAAT
1 TTATGTAAT
26596996 TTATGTATAAT
1 TTATG--TAAT
* *
26597007 ACTAATGTAAG
1 --TTATGTAAT
26597018 TTATGT-AT
1 TTATGTAAT
*
26597026 AATAT-TAAT
1 -TTATGTAAT
* *
26597035 TAAT-TAAG
1 TTATGTAAT
26597043 TTATGTAAT
1 TTATGTAAT
26597052 TTATGTATAAT
1 TTATG--TAAT
* *
26597063 ATTAATGCAAG
1 -TT-ATGTAAT
26597074 TTATGT-AT
1 TTATGTAAT
*
26597082 AATAT-TAAT
1 -TTATGTAAT
* *
26597091 TAAT-TAAG
1 TTATGTAAT
26597099 TTATGTAAT
1 TTATGTAAT
26597108 TTATGTATAAT
1 TTATG--TAAT
*
26597119 ATTAATGTAAC
1 -TT-ATGTAAT
26597130 TTATGTAAT
1 TTATGTAAT
26597139 TTATGTA
1 TTATGTA
26597146 TATTAATTAA
Statistics
Matches: 293, Mismatches: 45, Indels: 108
0.66 0.10 0.24
Matches are distributed among these distances:
5 1 0.00
6 4 0.01
7 5 0.02
8 44 0.15
9 126 0.43
10 6 0.02
11 56 0.19
12 19 0.06
13 24 0.08
14 5 0.02
16 3 0.01
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (9 bp):
TTATGTAAT
Found at i:26596772 original size:22 final size:22
Alignment explanation
Indices: 26596745--26596847 Score: 76
Period size: 22 Copynumber: 4.7 Consensus size: 22
26596735 ATTAACAAAG
26596745 TTATGTAATTTATGTA-TAATA
1 TTATGTAATTTATGTATTAATA
26596766 TTAATGTAA-TTA-GTTATGTAAT-
1 TT-ATGTAATTTATG-TAT-TAATA
* *
26596788 TTATGTATATTAAT-TAATTAA-G
1 TTATGTA-ATTTATGT-ATTAATA
26596810 TTATGTAATTTATGTA-TAATA
1 TTATGTAATTTATGTATTAATA
*
26596831 TTAATGTAAGTTATGTA
1 TT-ATGTAATTTATGTA
26596848 ATTTATGAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 23
0.71 0.04 0.25
Matches are distributed among these distances:
20 4 0.06
21 20 0.30
22 34 0.52
23 8 0.12
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (22 bp):
TTATGTAATTTATGTATTAATA
Found at i:26596801 original size:31 final size:31
Alignment explanation
Indices: 26596729--26597159 Score: 202
Period size: 31 Copynumber: 14.5 Consensus size: 31
26596719 GTTATGTATA
**
26596729 ATATTAATTAACAAAGTTATGTAATTTATGTAT
1 ATATTAATTAATTAAGTTATGTAATTTATG--T
26596762 AATATTAATGTAATT-AGTTATGTAATTTATGT
1 -ATATTAAT-TAATTAAGTTATGTAATTTATGT
26596794 ATATTAATTAATTAAGTTATGTAATTTATGT
1 ATATTAATTAATTAAGTTATGTAATTTATGT
* *
26596825 ATAAT-ATTAATGTAAGTTATGTAATTTATGA
1 ATATTAATTAAT-TAAGTTATGTAATTTATGT
** *
26596856 ATAATTATAAAAATGTAAGTTATGTAA-GT-TGT
1 AT-ATTA-ATTAAT-TAAGTTATGTAATTTATGT
* *
26596888 A-AGTT-ATGTAAGTTATG-TAT-TATATTAAT-T
1 ATA-TTAAT-TAA-TTAAGTTATGTA-ATTTATGT
* *
26596918 A-ATTAAGTT-ATGTAATTTATGT-ATAATAT-T
1 ATATTAA-TTAAT-TAAGTTATGTAAT-TTATGT
** * * *
26596948 A-ATGTAAGCAATGTAATTTATG---TGTA-AT
1 ATAT-TAATTAAT-TAAGTTATGTAATTTATGT
26596976 A-ATTAATTAAGTT-A-T---GTAATTTATGT
1 ATATTAATTAA-TTAAGTTATGTAATTTATGT
* *
26597002 ATAAT-ACTAATGTAAGTTATGT-A--TA---
1 ATATTAATTAAT-TAAGTTATGTAATTTATGT
26597027 ATATTAATTAATTAAGTTATGTAATTTATGT
1 ATATTAATTAATTAAGTTATGTAATTTATGT
* *
26597058 ATAAT-ATTAATGCAAGTTATGT-A--TA---
1 ATATTAATTAAT-TAAGTTATGTAATTTATGT
26597083 ATATTAATTAATTAAGTTATGTAATTTATGT
1 ATATTAATTAATTAAGTTATGTAATTTATGT
* *
26597114 ATAAT-ATTAATGTAACTTATGTAATTTATGT
1 ATATTAATTAAT-TAAGTTATGTAATTTATGT
26597145 ATATTAATTAATTAA
1 ATATTAATTAATTAA
26597160 ATGATATGTA
Statistics
Matches: 311, Mismatches: 36, Indels: 103
0.69 0.08 0.23
Matches are distributed among these distances:
22 1 0.00
25 32 0.10
26 21 0.07
27 9 0.03
28 19 0.06
29 13 0.04
30 45 0.14
31 114 0.37
32 12 0.04
33 1 0.00
34 41 0.13
35 3 0.01
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (31 bp):
ATATTAATTAATTAAGTTATGTAATTTATGT
Found at i:26596890 original size:16 final size:16
Alignment explanation
Indices: 26596869--26596901 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26596859 ATTATAAAAA
26596869 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596885 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26596901 T
1 T
26596902 ATGTATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:26597015 original size:22 final size:22
Alignment explanation
Indices: 26596989--26597039 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
26596979 TAATTAAGTT
26596989 ATGTAATTTATGTATAATACTA
1 ATGTAATTTATGTATAATACTA
* *
26597011 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATACTA
26597033 AT-TAATT
1 ATGTAATT
26597040 AAGTTATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (22 bp):
ATGTAATTTATGTATAATACTA
Found at i:26597329 original size:22 final size:22
Alignment explanation
Indices: 26597304--26597421 Score: 65
Period size: 22 Copynumber: 5.6 Consensus size: 22
26597294 TAATTAAGTT
26597304 ATGTAATTTAAGTATAATATTA
1 ATGTAATTTAAGTATAATATTA
** *
26597326 ATGTAA-GCAA-TGTAAT-TTA
1 ATGTAATTTAAGTATAATATTA
* *
26597345 TGTGTAATAATTAA-T-TAA-GTT-
1 -ATGTAAT--TTAAGTATAATATTA
* *
26597366 ATGTAATTTATGTATAATACTA
1 ATGTAATTTAAGTATAATATTA
* *
26597388 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTAAGTATAATATTA
26597410 AT-TAA-TTAAGTA
1 ATGTAATTTAAGTA
26597422 GTGTAATTTA
Statistics
Matches: 74, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
18 3 0.04
19 4 0.05
20 25 0.34
21 6 0.08
22 33 0.45
23 3 0.04
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (22 bp):
ATGTAATTTAAGTATAATATTA
Found at i:26597342 original size:31 final size:30
Alignment explanation
Indices: 26597280--26597462 Score: 184
Period size: 31 Copynumber: 6.2 Consensus size: 30
26597270 TGATATATAA
*
26597280 AATTTAA-TATTA-ATTAATTAAGTTATGT
1 AATTTAAGTATAATATTAATTAAGTTATGT
**
26597308 AATTTAAGTATAATATTAATGTAAGCAATGT
1 AATTTAAGTATAATATTAAT-TAAGTTATGT
* *
26597339 AATTTATGTGTAATAATTAATTAAGTTATGT
1 AATTTAAGTATAAT-ATTAATTAAGTTATGT
* *
26597370 AATTTATGTATAATACTAATGTAAGTTATGT
1 AATTTAAGTATAATATTAAT-TAAGTTATGT
*
26597401 -A--TAA-TATTA-ATTAATTAAG-TAGTGT
1 AATTTAAGTATAATATTAATTAAGTTA-TGT
*
26597426 AATTTATGTATAATATTAATGTAAGTTATGT
1 AATTTAAGTATAATATTAAT-TAAGTTATGT
26597457 AATTTA
1 AATTTA
26597463 TGAATAATTA
Statistics
Matches: 128, Mismatches: 14, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
24 2 0.02
25 7 0.05
26 6 0.05
27 4 0.03
28 11 0.09
29 8 0.06
30 18 0.14
31 64 0.50
32 8 0.06
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.46
Consensus pattern (30 bp):
AATTTAAGTATAATATTAATTAAGTTATGT
Found at i:26597486 original size:34 final size:31
Alignment explanation
Indices: 26597298--26597563 Score: 162
Period size: 31 Copynumber: 9.1 Consensus size: 31
26597288 ATTAATTAAT
* * *
26597298 TAAGTTATGTAATTTAAGTATAATATTAATG
1 TAAGTTATGTAATTTATGAATAATATAAATG
** ** *
26597329 TAAGCAATGTAATTTATGTGTAATAATTAAT-
1 TAAGTTATGTAATTTATGAATAAT-ATAAATG
*
26597360 TAAGTTATGTAATTTATGTATAATACT-AATG
1 TAAGTTATGTAATTTATGAATAATA-TAAATG
* *
26597391 TAAGTTATGT-A-TAAT-ATTAAT-T-AAT-
1 TAAGTTATGTAATTTATGAATAATATAAATG
* *
26597416 TAAG-TAGTGTAATTTATGTATAATATTAATG
1 TAAGTTA-TGTAATTTATGAATAATATAAATG
26597447 TAAGTTATGTAATTTATGAATAATTATAAAAATG
1 TAAGTTATGTAATTTATGAATAA-TAT--AAATG
*
26597481 TAAGTTATGTAA-GT-TG--TAAGT-T--ATG
1 TAAGTTATGTAATTTATGAATAA-TATAAATG
*
26597506 TAAGTTATGT-A-TTAT-ATTAAT-T-AAT-
1 TAAGTTATGTAATTTATGAATAATATAAATG
* *
26597531 TAAGTTATGTAATTTATGTATAATATTAATG
1 TAAGTTATGTAATTTATGAATAATATAAATG
26597562 TA
1 TA
26597564 TTAATATAAA
Statistics
Matches: 191, Mismatches: 20, Indels: 48
0.74 0.08 0.19
Matches are distributed among these distances:
24 4 0.02
25 33 0.17
26 11 0.06
27 7 0.04
28 12 0.06
29 6 0.03
30 15 0.08
31 73 0.38
32 13 0.07
33 1 0.01
34 16 0.08
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (31 bp):
TAAGTTATGTAATTTATGAATAATATAAATG
Found at i:26597492 original size:9 final size:9
Alignment explanation
Indices: 26597478--26597550 Score: 68
Period size: 9 Copynumber: 8.6 Consensus size: 9
26597468 AATTATAAAA
26597478 ATGTAAGTT
1 ATGTAAGTT
26597487 ATGTAAG-T
1 ATGTAAGTT
26597495 -TGTAAGTT
1 ATGTAAGTT
26597503 ATGTAAGTT
1 ATGTAAGTT
26597512 ATGT-A-TT
1 ATGTAAGTT
*
26597519 ATATTAA-TT
1 AT-GTAAGTT
26597528 AAT-TAAGTT
1 -ATGTAAGTT
*
26597537 ATGTAATTT
1 ATGTAAGTT
26597546 ATGTA
1 ATGTA
26597551 TAATATTAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
7 10 0.18
8 9 0.16
9 34 0.62
10 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:26597500 original size:16 final size:16
Alignment explanation
Indices: 26597479--26597511 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26597469 ATTATAAAAA
26597479 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26597495 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
26597511 T
1 T
26597512 ATGTATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:26597814 original size:15 final size:17
Alignment explanation
Indices: 26597775--26597807 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26597765 CTAATCCGAC
26597775 CCTCTTAAAACCCTAAA
1 CCTCTTAAAACCCTAAA
*
26597792 CCTCTTAAATCCCTAA
1 CCTCTTAAAACCCTAA
26597808 CTCTTAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.27
Consensus pattern (17 bp):
CCTCTTAAAACCCTAAA
Found at i:26598851 original size:114 final size:114
Alignment explanation
Indices: 26598669--26599362 Score: 976
Period size: 114 Copynumber: 6.1 Consensus size: 114
26598659 GCTTTAACAA
* * * * *
26598669 AAACGCCGCTAAAAC-CTATATTATTCGTGGCGCTAATCTAAAAACGCCACTAA-AGTCACCGAA
1 AAACGCCGCTAATACTC-ATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATA-TCACCGAA
*
26598732 GTGTCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATAG
64 GTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
* * *
26598783 AAACACCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAATGCCATTAATATCACCGAAGT
1 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATATCACCGAAGT
* *
26598848 GTCTCCAGACGACGTCGTCTGGGTTTTAGTTTTTGCGGCGTTTTGTAT--
66 GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTT-TATAG
* ** *
26598896 --A--CCGCTAATACTCATATTATTAGCGGCGCTACTCGGAAAACGCCACTAATGTCACCGAAGT
1 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATATCACCGAAGT
** * * * * *
26598957 GTCTCCAAATAAAGTCGTTTGGGTTTTAGTTTTTCCGGCGTTTTTGTAG
66 GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
26599006 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATT-AGAAAAACGCCACTAA-AGTCACCGAA
1 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCA-AAAAACGCCACTAATA-TCACCGAA
* *
26599069 GTGTCTCCAAACGACATCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATAG
64 GTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
* *
26599120 AAACGCCACTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATGTCACCGAAGT
1 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATATCACCGAAGT
*
26599185 GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTACAG
66 GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
* * *
26599234 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCGAAAAATGCCACTAATGTCACCGAAGT
1 AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATATCACCGAAGT
* *
26599299 TTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCGTTTTTATAG
66 GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
*
26599348 AAACGCCCCTAATAC
1 AAACGCCGCTAATAC
26599363 AAAATCGGTT
Statistics
Matches: 518, Mismatches: 49, Indels: 26
0.87 0.08 0.04
Matches are distributed among these distances:
108 2 0.00
109 92 0.18
111 1 0.00
112 1 0.00
114 416 0.80
115 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (114 bp):
AAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGCCACTAATATCACCGAAGT
GTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCATTTTTATAG
Found at i:26600720 original size:125 final size:125
Alignment explanation
Indices: 26600459--26600870 Score: 727
Period size: 125 Copynumber: 3.3 Consensus size: 125
26600449 CCCAAACATG
* * * * *
26600459 CTACTATAGCAAAAACGCGTCCATGTAGGAGAGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
* *
26600524 TTGAAGC-GTTTTTAGACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
26600583 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
26600648 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
26600708 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGTGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
*
26600773 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
*
26600833 CTAATGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
26600871 CTTAATAAAT
Statistics
Matches: 276, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
124 67 0.24
125 209 0.76
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:26601076 original size:6 final size:6
Alignment explanation
Indices: 26601058--26601090 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
26601048 AAATCCTAAA
26601058 AACCCT AAACCCT AACCCT AACCCT AACCCT AA
1 AACCCT -AACCCT AACCCT AACCCT AACCCT AA
26601091 AAACCCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:26601406 original size:5 final size:5
Alignment explanation
Indices: 26601396--26601431 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
26601386 TAAATTTTAT
26601396 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
26601432 ACACCGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:26603204 original size:24 final size:24
Alignment explanation
Indices: 26603176--26603227 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
26603166 TAGCACCCAT
* *
26603176 TAAATGTAAAATTTTA-AAAATCTA
1 TAAATATAAAATTATATAAAAT-TA
*
26603200 TAAATATTAAATTATATAAAATTA
1 TAAATATAAAATTATATAAAATTA
26603224 TAAA
1 TAAA
26603228 GAATTTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
TAAATATAAAATTATATAAAATTA
Found at i:26603232 original size:10 final size:9
Alignment explanation
Indices: 26603208--26603260 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 9
26603198 TATAAATATT
26603208 AAATTATATA
1 AAATTATA-A
26603218 AAATTATAA
1 AAATTATAA
26603227 AGAATTTACTAA
1 A-AA-TTA-TAA
26603239 AAGATTATTAA
1 AA-ATTA-TAA
26603250 AAATTATAA
1 AAATTATAA
26603259 AA
1 AA
26603261 TACAATTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
9 7 0.18
10 14 0.37
11 12 0.32
12 5 0.13
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (9 bp):
AAATTATAA
Found at i:26603259 original size:20 final size:18
Alignment explanation
Indices: 26603208--26603260 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 18
26603198 TATAAATATT
26603208 AAATTATATAAAATTATAA
1 AAATTATA-AAAATTATAA
26603227 AGAATTTACTAAAAGATTATTAA
1 A-AA-TTA-TAAAA-ATTA-TAA
26603250 AAATTATAAAA
1 AAATTATAAAA
26603261 TACAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
19 1 0.03
20 7 0.24
21 9 0.31
22 8 0.28
23 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (18 bp):
AAATTATAAAAATTATAA
Found at i:26603803 original size:15 final size:15
Alignment explanation
Indices: 26603783--26603812 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26603773 CATAATGAAA
26603783 ATTATTGAAAAAAAT
1 ATTATTGAAAAAAAT
*
26603798 ATTATTTAAAAAAAT
1 ATTATTGAAAAAAAT
26603813 TTAAAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
ATTATTGAAAAAAAT
Found at i:26604554 original size:19 final size:20
Alignment explanation
Indices: 26604532--26604586 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
26604522 TAAATTTTAA
26604532 AAATATATAAAATA-GAAAG
1 AAATATATAAAATATGAAAG
* *
26604551 AAATATACAAAA-ATGTAAG
1 AAATATATAAAATATGAAAG
26604570 AAGTATATATAAAATAT
1 AA--ATATATAAAATAT
26604587 CTATATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 1 0.03
19 17 0.59
21 9 0.31
22 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (20 bp):
AAATATATAAAATATGAAAG
Found at i:26604620 original size:13 final size:13
Alignment explanation
Indices: 26604602--26604626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26604592 TATAAATTTA
26604602 AAGAAGAAGAAAG
1 AAGAAGAAGAAAG
26604615 AAGAAGAAGAAA
1 AAGAAGAAGAAA
26604627 TTCATGGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAAG
Found at i:26608432 original size:26 final size:27
Alignment explanation
Indices: 26608350--26608439 Score: 107
Period size: 26 Copynumber: 3.5 Consensus size: 27
26608340 AGCAAGCCAT
*
26608350 ATCGGGAAGCTC-CGGAGAGCCAT-TA
1 ATCGGGAAGCTCACGAAGAGCCATATA
* * *
26608375 ATCAGGAAGCTCACAAAGAGCC-TTTA
1 ATCGGGAAGCTCACGAAGAGCCATATA
26608401 ATCGGGAAGCTCACGAAGAGCCATATA
1 ATCGGGAAGCTCACGAAGAGCCATATA
*
26608428 A-CGGGACGCTCA
1 ATCGGGAAGCTCA
26608440 TAAAAGTTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
25 12 0.22
26 39 0.71
27 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.27, T:0.16
Consensus pattern (27 bp):
ATCGGGAAGCTCACGAAGAGCCATATA
Found at i:26608540 original size:25 final size:25
Alignment explanation
Indices: 26608495--26608578 Score: 68
Period size: 25 Copynumber: 3.4 Consensus size: 25
26608485 GAGCTATTAA
26608495 CGGGAAGCTCGCATGA-A-CCATATAGT
1 CGGGAAGCT--CATGAGAGCCATATA-T
*
26608521 -GGGAAGCTCATGAGAGCCATTTAT
1 CGGGAAGCTCATGAGAGCCATATAT
* * *
26608545 CGAGATGCTCATGAGAGCTA-ATAT
1 CGGGAAGCTCATGAGAGCCATATAT
*
26608569 CGGGATGCTC
1 CGGGAAGCTC
26608579 TTTCGAGCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
23 5 0.10
24 14 0.29
25 30 0.61
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (25 bp):
CGGGAAGCTCATGAGAGCCATATAT
Found at i:26608575 original size:24 final size:25
Alignment explanation
Indices: 26608512--26608578 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
26608502 CTCGCATGAA
*
26608512 CCATATAGT-GGGAAGCTCATGAGAG
1 CCATATA-TCGGGATGCTCATGAGAG
* *
26608537 CCATTTATCGAGATGCTCATGAGAG
1 CCATATATCGGGATGCTCATGAGAG
*
26608562 CTA-ATATCGGGATGCTC
1 CCATATATCGGGATGCTC
26608579 TTTCGAGCTG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
24 13 0.37
25 22 0.63
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (25 bp):
CCATATATCGGGATGCTCATGAGAG
Found at i:26612333 original size:16 final size:16
Alignment explanation
Indices: 26612312--26612342 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26612302 GTATATTTAT
*
26612312 TTATGTATTTTATATA
1 TTATGTAATTTATATA
26612328 TTATGTAATTTATAT
1 TTATGTAATTTATAT
26612343 CATAAGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (16 bp):
TTATGTAATTTATATA
Found at i:26616654 original size:16 final size:15
Alignment explanation
Indices: 26616633--26616684 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
26616623 AGAGTGAAAA
26616633 GAAAATTGGAAGGATG
1 GAAAATT-GAAGGATG
* *
26616649 GAAAATTGAAGGGTA
1 GAAAATTGAAGGATG
* *
26616664 GAAAACTAGATGGATG
1 GAAAA-TTGAAGGATG
26616680 GAAAA
1 GAAAA
26616685 CATAATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 11 0.38
16 18 0.62
ACGTcount: A:0.48, C:0.02, G:0.33, T:0.17
Consensus pattern (15 bp):
GAAAATTGAAGGATG
Found at i:26618290 original size:18 final size:18
Alignment explanation
Indices: 26618248--26618301 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
26618238 AAAGAGCAAG
* *
26618248 GACAGGGACAGGGAAAGG
1 GACAGGGACAGAGAAAGA
*
26618266 GAGAGGGACAGAGAAAGA
1 GACAGGGACAGAGAAAGA
*
26618284 GACAGGGAGAGAGCAAAG
1 GACAGGGACAGAG-AAAG
26618302 GCCCGGGATC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.44, C:0.09, G:0.46, T:0.00
Consensus pattern (18 bp):
GACAGGGACAGAGAAAGA
Found at i:26622097 original size:29 final size:29
Alignment explanation
Indices: 26622041--26622099 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26622031 ATGACTTTCA
* * *
26622041 CTATTTGCATCTTTTACTATCCCAGGTGG
1 CTATTTGCATATTCTACCATCCCAGGTGG
* *
26622070 CTATTTGCATATTCTACCATCTCGGGTGG
1 CTATTTGCATATTCTACCATCCCAGGTGG
26622099 C
1 C
26622100 CCGACAACGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (29 bp):
CTATTTGCATATTCTACCATCCCAGGTGG
Found at i:26622142 original size:49 final size:48
Alignment explanation
Indices: 26622070--26622166 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 48
26622060 TCCCAGGTGG
* *
26622070 CTATTTGCATATTCTACCATCTCGGGTGGCCCGACAACGATGGCTTTTA
1 CTATTTGCATATTCTACCATCTCGAGTAGCCCGACAACGATGG-TTTTA
26622119 CTATTTGCA-ATTTCTACCATCTCGAGTAGCCCGACAACGATGGTTTTA
1 CTATTTGCATA-TTCTACCATCTCGAGTAGCCCGACAACGATGGTTTTA
26622167 AATCACTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 6 0.13
49 39 0.87
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (48 bp):
CTATTTGCATATTCTACCATCTCGAGTAGCCCGACAACGATGGTTTTA
Found at i:26623866 original size:61 final size:60
Alignment explanation
Indices: 26623779--26623928 Score: 182
Period size: 56 Copynumber: 2.5 Consensus size: 60
26623769 AGTAAAAGTC
* * * * * *
26623779 TGGGCCTGAGCCCTATTCAGTGACAGTACAGTGTGGGCCTTAGCCCAATACAAAATTAGTG
1 TGGGCCTTAGCCCAATACAGT-ACAGTACAGTGTGGGCCTTAGCCCAATACAAAATCAATA
*
26623840 TGGGCCTTAGCCCAATACAGT--A--ACAGTGTGGGCCTTAGCCCAATACAGAATCAATA
1 TGGGCCTTAGCCCAATACAGTACAGTACAGTGTGGGCCTTAGCCCAATACAAAATCAATA
*
26623896 TGGGCCTTAGCCCAATACAGTAACAGTGCAGTG
1 TGGGCCTTAGCCCAATACAGT-ACAGTACAGTG
26623929 CAATAATGCA
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
56 51 0.67
58 1 0.01
59 1 0.01
61 23 0.30
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (60 bp):
TGGGCCTTAGCCCAATACAGTACAGTACAGTGTGGGCCTTAGCCCAATACAAAATCAATA
Found at i:26623883 original size:56 final size:56
Alignment explanation
Indices: 26623801--26623923 Score: 203
Period size: 56 Copynumber: 2.2 Consensus size: 56
26623791 CTATTCAGTG
* * *
26623801 ACAGT-ACAGTGTGGGCCTTAGCCCAATACAAAATTAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAATACAAAATCAATATGGGCCTTAGCCCAAT
*
26623856 ACAGTAACAGTGTGGGCCTTAGCCCAATACAGAATCAATATGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAATACAAAATCAATATGGGCCTTAGCCCAAT
26623912 ACAGTAACAGTG
1 ACAGTAACAGTG
26623924 CAGTGCAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
55 5 0.08
56 58 0.92
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.22
Consensus pattern (56 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAATACAAAATCAATATGGGCCTTAGCCCAAT
Found at i:26623915 original size:28 final size:28
Alignment explanation
Indices: 26623807--26623923 Score: 166
Period size: 28 Copynumber: 4.2 Consensus size: 28
26623797 AGTGACAGTA
*
26623807 CAGTGTGGGCCTTAGCCCAATACAAAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
*
26623835 TAGTGTGGGCCTTAGCCCAATACAGTAA-
1 CAGTGTGGGCCTTAGCCCAATACAG-AAT
26623863 CAGTGTGGGCCTTAGCCCAATACAGAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
* *
26623891 CAATATGGGCCTTAGCCCAATACAGTAA-
1 CAGTGTGGGCCTTAGCCCAATACAG-AAT
26623919 CAGTG
1 CAGTG
26623924 CAGTGCAATA
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 73 0.92
29 4 0.05
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACAGAAT
Found at i:26624347 original size:27 final size:27
Alignment explanation
Indices: 26624313--26624751 Score: 396
Period size: 27 Copynumber: 16.3 Consensus size: 27
26624303 GGGTATAACA
26624313 TTACCCTATGGGGGTATTTCGATCATT
1 TTACCCTATGGGGGTATTTCGATCATT
*
26624340 TTACCCTATAGGGGTATTTCGATCATT
1 TTACCCTATGGGGGTATTTCGATCATT
* *
26624367 TTTCCCT-TCGGGGGTATTTCGGTCATT
1 TTACCCTAT-GGGGGTATTTCGATCATT
* * * *
26624394 TTATCCTATGAGAGTATTTAGATCATT
1 TTACCCTATGGGGGTATTTCGATCATT
* *
26624421 TTA-CCTTTCGGGGGTATTTCAATCATT
1 TTACCCTAT-GGGGGTATTTCGATCATT
* *
26624448 TTACCCT-TCGAGGGTATTTCGATAATT
1 TTACCCTAT-GGGGGTATTTCGATCATT
* * *
26624475 TTA-CCTTTCGAGGGTATTTCGATAATT
1 TTACCCTAT-GGGGGTATTTCGATCATT
* * * * *
26624502 TTACCCTTTGAGGGTAATTCGGTCGTT
1 TTACCCTATGGGGGTATTTCGATCATT
* * *
26624529 TTACCCTTTGGGGGTAATTCGATCGTT
1 TTACCCTATGGGGGTATTTCGATCATT
* *
26624556 TTACCCTTTGGGGGTAATTC-AGTCATT
1 TTACCCTATGGGGGTATTTCGA-TCATT
*
26624583 TTACCCT-TCGAGGGTAATTT-GATCATT
1 TTACCCTAT-GGGGGT-ATTTCGATCATT
*
26624610 TTATCCTATGGGGGTATTTC-AGTCATT
1 TTACCCTATGGGGGTATTTCGA-TCATT
* * * *
26624637 TTATCCTATTGGGGTATTT-TAGTAATT
1 TTACCCTATGGGGGTATTTCGA-TCATT
*
26624664 TTACCCTATGGGGGTATTTCAATCATT
1 TTACCCTATGGGGGTATTTCGATCATT
26624691 TTACCCTATGGGGGTATTTC-AGTCATT
1 TTACCCTATGGGGGTATTTCGA-TCATT
* **
26624718 TTACCCTTTAAGGGTATTTC-ATTCATT
1 TTACCCTATGGGGGTATTTCGA-TCATT
26624745 TTACCCT
1 TTACCCT
26624752 TCGAAGGTAT
Statistics
Matches: 357, Mismatches: 39, Indels: 32
0.83 0.09 0.07
Matches are distributed among these distances:
26 16 0.04
27 326 0.91
28 15 0.04
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
TTACCCTATGGGGGTATTTCGATCATT
Found at i:26625030 original size:19 final size:19
Alignment explanation
Indices: 26625006--26625050 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
26624996 ATCCGTGTGG
26625006 GGCCCACATAGCCCATTTC
1 GGCCCACATAGCCCATTTC
* *
26625025 GGCCCAACGTGGCCCATTTC
1 GGCCC-ACATAGCCCATTTC
26625045 GGCCCA
1 GGCCCA
26625051 AGTCCATGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.18, C:0.42, G:0.22, T:0.18
Consensus pattern (19 bp):
GGCCCACATAGCCCATTTC
Found at i:26636935 original size:408 final size:407
Alignment explanation
Indices: 26635660--26636949 Score: 1831
Period size: 411 Copynumber: 3.2 Consensus size: 407
26635650 AAGCCTTTTG
* * * *
26635660 TTATTAAGTTAGTTTTCAAACCCTGTAAAAGTAATACATTTTC-AGGTCAAGGAAAA-ATTTAAT
1 TTATTAAGTTAGTTTTCAATCACTGTACAAGTAATACATTTTCAAGGTCAA-GAAAACCTTTAAT
* * * * * * *
26635723 TGTGTTATTACTTGTGGCAAAATTAGATGAGACAACACGTGTTGTTTACCCAAAACACAATCTCC
65 TGTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTTTCCCCAAAACACAATCTCC
* * * * * *
26635788 ACAAGGTCTGATCACAACACATTCAAGTTTTGAAAATCTTCTAATTGCATCATATTGATCAAGTC
130 ACAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCATCTAATTGCATCATATTGATCAAGTC
* * * *
26635853 TTTGTAAGTTTCGATAGTTCACATCACCAATGTTTTGATGTAACACCTCCAGATCTTGCATAGTA
195 TTTGTAAGTTTCGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTA
* **
26635918 GCTTTATTGCAAATAACTTCATTAAAAACTTTGTAACAAGTTTCAAATTTTTTTGCTCCTCTTAT
260 GCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAA-TTTCAAAAATTTTTGCTCCTCTTAT
* *
26635983 TATAAGAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCTCATATTAAGCCTTTGG
324 TATAACAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCACATATTAAGCCTTTGG
26636048 TCACATAGTTGACTTATGC
389 TCACATAGTTGACTTATGC
* * * * *
26636067 TTATTAAGTTAGTTTTCAATCCCTGTACAAGTAGTACATTATCAAGGTTAAGAAAATCTTTAATT
1 TTATTAAGTTAGTTTTCAATCACTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAATT
* * * *
26636132 GTGTCACTACTTATGGCAAAATTAGATAGGTCACTATGTGTTGTTTCCTCAAAACACAATCTCCA
66 GTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTTTCCCCAAAACACAATCTCCA
* * *
26636197 CAAGGTTTGGTCACAACACTTTTGAGTTTTGAAAGT-ATTCTAATTACATCATATTGATAAAGTC
131 CAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCA-TCTAATTGCATCATATTGATCAAGTC
* *
26636261 TTTGTAAGTTTTGATAATTCACATCACCAATCTTTTGATATTGTCACACCTTTAGATCTTGCATA
195 TTTGTAAGTTTCGATAATTCACATCACCAATCTTTTG--A-TGTCACACCTCTAGATCTTGCATA
* *
26636326 GTAGCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTTCAAAAAATTTTGCTCCTCC
257 GTAGCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAA-TTTCAAAAATTTTTGCTCCTCT
* *
26636391 TATTATAACAATTCTTTTCATTAATTACATCCCAACTATTTTTGTTAAAT-ATCATATTAAGCCT
321 TATTATAACAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCA-CATATTAAGCCT
*
26636455 TTGGTCATATAGTTGACTTATGC
385 TTGGTCACATAGTTGACTTATGC
* * * * *
26636478 TTATTAACTTAGCTTTCAATCCAC-ATACAAGTAATATATTTTAAAGGTCAAGAAAACCTTTAAT
1 TTATTAAGTTAGTTTTCAAT-CACTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAAT
*
26636542 TGTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTCTCCCCAAAACACAATCTCC
65 TGTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTTTCCCCAAAACACAATCTCC
* *
26636607 ACAACGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCATCTAATTGCATCATATTGATCAATTC
130 ACAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCATCTAATTGCATCATATTGATCAAGTC
* *
26636672 TTTGTAAGTTTCGATAATTCACACCACCAATCTTTTGATGTCACACATCTAGATCTTGCATAGTA
195 TTTGTAAGTTTCGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTA
* * * * *
26636737 GCTTTATTGAAAATAACTTCATTCAAAACTTTGTAGCAATTATCAAAAGTTTTTACTCTTCTTAT
260 GCTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATT-TCAAAAATTTTTGCTCCTCTTAT
* * *
26636802 TCTAA-ATTTTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCACATATTAAGTCTTTG
324 TATAACA-ATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCACATATTAAGCCTTTG
26636866 GTCACAT-GCTTGACTTATGC
388 GTCACATAG-TTGACTTATGC
*
26636886 TTATTACA-TTAGTTTTCAATCATTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAAT
1 TTATTA-AGTTAGTTTTCAATCACTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAAT
26636950 AAAGTATACA
Statistics
Matches: 783, Mismatches: 85, Indels: 29
0.87 0.09 0.03
Matches are distributed among these distances:
407 50 0.06
408 361 0.46
409 3 0.00
410 1 0.00
411 365 0.47
412 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.39
Consensus pattern (407 bp):
TTATTAAGTTAGTTTTCAATCACTGTACAAGTAATACATTTTCAAGGTCAAGAAAACCTTTAATT
GTGTCACTACTTGTGGCAAAATTAGATGGGTCACCATGTGTTGTTTCCCCAAAACACAATCTCCA
CAAGGTTTGGTCACAACACTTTCGAGTTTTGAAAGTCATCTAATTGCATCATATTGATCAAGTCT
TTGTAAGTTTCGATAATTCACATCACCAATCTTTTGATGTCACACCTCTAGATCTTGCATAGTAG
CTTTATTGCAAATAACTTCATTAAAAACTTTGTAGCAATTTCAAAAATTTTTGCTCCTCTTATTA
TAACAATTTTTTTCATTAATTACATCACAACTATTTTTGTTAAATCACATATTAAGCCTTTGGTC
ACATAGTTGACTTATGC
Found at i:26640686 original size:20 final size:20
Alignment explanation
Indices: 26640657--26640699 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26640647 AAAATAAAAA
* **
26640657 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
26640677 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
26640697 TAT
1 TAT
26640700 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:26640694 original size:32 final size:32
Alignment explanation
Indices: 26640658--26640718 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
26640648 AAATAAAAAT
26640658 ATAATTATTCATTT-AATA-TTATAACTATTCAA
1 ATAA-TATT-ATTTAAATAGTTATAACTATTCAA
*
26640690 ATAATATTATTTAAATAGTTATAATTATT
1 ATAATATTATTTAAATAGTTATAACTATT
26640719 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 4 0.15
31 8 0.31
32 14 0.54
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (32 bp):
ATAATATTATTTAAATAGTTATAACTATTCAA
Found at i:26650759 original size:5 final size:5
Alignment explanation
Indices: 26650749--26650774 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26650739 TTTATTCATC
26650749 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
26650775 TGAATAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:26654046 original size:6 final size:6
Alignment explanation
Indices: 26654035--26654071 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
26654025 TGAAGTTCTT
26654035 GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA G
1 GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA GGGTTA G
26654072 TTTGAGGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.32
Consensus pattern (6 bp):
GGGTTA
Found at i:26655520 original size:31 final size:32
Alignment explanation
Indices: 26655470--26655530 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
26655460 TGAATTATTC
* *
26655470 AAAAATTTTCATTTTAGTCAATAAACTATTTA
1 AAAAAATTTCATTTAAGTCAATAAACTATTTA
* *
26655502 AAAAAATTT-ATTTAAGTCACTAGACTATT
1 AAAAAATTTCATTTAAGTCAATAAACTATT
26655531 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (32 bp):
AAAAAATTTCATTTAAGTCAATAAACTATTTA
Found at i:26666314 original size:12 final size:12
Alignment explanation
Indices: 26666265--26666307 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
26666255 TCATTTTATC
*
26666265 ATCAAGTCTTGA
1 ATCAAGTCATGA
26666277 ATCAAGTCATGA
1 ATCAAGTCATGA
*
26666289 ATCAAGTCATTA
1 ATCAAGTCATGA
26666301 ATCAAGT
1 ATCAAGT
26666308 TTTTAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (12 bp):
ATCAAGTCATGA
Found at i:26667570 original size:15 final size:15
Alignment explanation
Indices: 26667552--26667586 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26667542 TTTAGTTTTA
*
26667552 ATTTTTTTTCTTATT
1 ATTTTTTTTATTATT
*
26667567 ATTTTTTTTATTTTT
1 ATTTTTTTTATTATT
26667582 ATTTT
1 ATTTT
26667587 GTAGGGAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTTTTTATTATT
Found at i:26671220 original size:20 final size:20
Alignment explanation
Indices: 26671197--26671279 Score: 57
Period size: 20 Copynumber: 4.3 Consensus size: 20
26671187 TAATAAGATC
26671197 TAATAAAATAATAAATAATT
1 TAATAAAATAATAAATAATT
* * **
26671217 TAATCATATTTTAATATAA-T
1 TAATAAAATAATAA-ATAATT
* **
26671237 T-ATTATTTAAT--ATAATT
1 TAATAAAATAATAAATAATT
*
26671254 TAATAAAATAATATATAATT
1 TAATAAAATAATAAATAATT
26671274 TAATAA
1 TAATAA
26671280 TATTTTTAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
16 4 0.09
17 2 0.04
18 7 0.15
19 6 0.13
20 24 0.51
21 4 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATAAAATAATAAATAATT
Found at i:26671256 original size:10 final size:10
Alignment explanation
Indices: 26671211--26671295 Score: 63
Period size: 11 Copynumber: 8.6 Consensus size: 10
26671201 AAAATAATAA
26671211 ATAATTTAAT
1 ATAATTTAAT
*
26671221 CATATTTTAAT
1 -ATAATTTAAT
26671232 ATAA-TT-AT
1 ATAATTTAAT
26671240 -T-ATTTAAT
1 ATAATTTAAT
26671248 ATAATTTAAT
1 ATAATTTAAT
* *
26671258 A-AAATAATAT
1 ATAATTTA-AT
26671268 ATAATTTAAT
1 ATAATTTAAT
*
26671278 AATATTTTTAAT
1 -ATA-ATTTAAT
26671290 ATAATT
1 ATAATT
26671296 ATTTTTATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
6 1 0.02
7 3 0.05
8 4 0.07
9 7 0.12
10 18 0.31
11 19 0.33
12 6 0.10
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:26671272 original size:57 final size:58
Alignment explanation
Indices: 26671184--26671302 Score: 181
Period size: 57 Copynumber: 2.1 Consensus size: 58
26671174 TGTTATTAAA
*
26671184 ATTTAATAAGATCTAATAAAATAATAAATAATTTAATCATA-TTTTAATATAATTATT
1 ATTTAATAAGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
* *
26671241 ATTTAATATA-ATTTAATAAAATAATATATAATTTAATAATATTTTTAATATAATTATT
1 ATTTAATA-AGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
26671299 -TTTA
1 ATTTA
26671303 TATTAAATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
57 40 0.70
58 17 0.30
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (58 bp):
ATTTAATAAGATCTAATAAAATAATAAATAATTTAATAATATTTTTAATATAATTATT
Found at i:26671313 original size:16 final size:15
Alignment explanation
Indices: 26671225--26671302 Score: 58
Period size: 15 Copynumber: 5.3 Consensus size: 15
26671215 TTTAATCATA
26671225 TTTTAATATAATTAT
1 TTTTAATATAATTAT
26671240 TATTTAATATAA-T-T
1 T-TTTAATATAATTAT
** *
26671254 TAATAAAATAATATAT
1 TTTTAATATAAT-TAT
*
26671270 AATTT-A-ATAA-TAT
1 -TTTTAATATAATTAT
26671283 TTTTAATATAATTAT
1 TTTTAATATAATTAT
26671298 TTTTA
1 TTTTA
26671303 TATTAAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 16
0.68 0.10 0.23
Matches are distributed among these distances:
12 3 0.06
13 11 0.23
14 6 0.12
15 15 0.31
16 12 0.25
17 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTTTAATATAATTAT
Found at i:26671315 original size:10 final size:10
Alignment explanation
Indices: 26671300--26671379 Score: 57
Period size: 10 Copynumber: 8.6 Consensus size: 10
26671290 ATAATTATTT
26671300 TTATATTAAA
1 TTATATTAAA
26671310 TTATATTAAA
1 TTATATTAAA
26671320 --ATATT---
1 TTATATTAAA
*
26671325 TTATTTTAAA
1 TTATATTAAA
26671335 TTATATT-AA
1 TTATATTAAA
* **
26671344 TT-TTTTAGTT
1 TTATATTA-AA
26671354 TTATATTAAA
1 TTATATTAAA
26671364 TTATATTAAA
1 TTATATTAAA
*
26671374 ATATAT
1 TTATAT
26671380 CTTTATATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
7 4 0.08
8 8 0.15
9 4 0.08
10 33 0.62
11 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (10 bp):
TTATATTAAA
Found at i:26674423 original size:22 final size:22
Alignment explanation
Indices: 26674398--26674442 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
26674388 AGCGTTTTGG
*
26674398 ACAAGAATCAGGTTTATATACA
1 ACAAGAATCACGTTTATATACA
26674420 ACAAGAATCACGTTTATATACA
1 ACAAGAATCACGTTTATATACA
26674442 A
1 A
26674443 TATTAAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (22 bp):
ACAAGAATCACGTTTATATACA
Found at i:26677285 original size:124 final size:126
Alignment explanation
Indices: 26676990--26677326 Score: 421
Period size: 124 Copynumber: 2.7 Consensus size: 126
26676980 ATTTCTAATA
*
26676990 AAATAATATAAAATCGCTTCTAGCAGGATGGTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
* *
26677055 GGACGCACTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTTTTGACGTTTTTGAGC
66 AGACGCACTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
* * * *
26677116 AAATAGTATAAAATCGCTTCCAGCAGGATGCTATTTGAGAAGAATTTATGAAATTGCGGCCTCGT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
* **** ***
26677181 CAG-CGCGCTTTTGCTACAGTAGGTCTTTTAATCTATAA-T-TTTTTTTGACGTTTCTGAGC
66 -AGACGCACTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
* * * * * **
26677240 AAATAACATAAAATCGCTTATACCAGGATGCTATTTGGGAAGAATTTGTGAAATCGCGCCCTAAT
1 AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
*
26677305 GGACGCGA-TTTTGCTACAGTAG
66 AGACGC-ACTTTTGCTACAGTAG
26677327 CATGTTTGGG
Statistics
Matches: 180, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
123 1 0.01
124 90 0.50
125 1 0.01
126 87 0.48
127 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (126 bp):
AAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGT
AGACGCACTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTTTTGACGTTTCTGAGC
Found at i:26680586 original size:23 final size:23
Alignment explanation
Indices: 26680560--26680788 Score: 137
Period size: 23 Copynumber: 9.5 Consensus size: 23
26680550 CATTACGTTA
26680560 AGGTTAGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
*
26680583 AGGTTAGGGTTAGGGTTTTTATTAAATT
1 AGGTTAGGG-T----TTTTAATTAAATT
*
26680611 AGGTTAGGGTTTTT-ATTTAA--
1 AGGTTAGGGTTTTTAATTAAATT
* *
26680631 GGGTTTAGGGCTTTTAATTAAATTAAGTT
1 AGG-TTAGGG--TTT--TT-AATTAAATT
*
26680660 AGAGTTAGGGTTTTTAATTGAATT
1 AG-GTTAGGGTTTTTAATTAAATT
* *** * * *
26680684 AGATTAGGGTTAGGATTTTTATTT
1 AGGTTAGGGTTTTTA-ATTAAATT
*
26680708 AAGGGTTTAGGGCTTTTAATTAAATT
1 -A-GG-TTAGGGTTTTTAATTAAATT
26680734 AGGTTAGGGTTTTTAATT-AA--
1 AGGTTAGGGTTTTTAATTAAATT
*
26680754 GGGTTTAGGGTTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
26680778 AGGTTAGGGTT
1 AGGTTAGGGTT
26680789 AGGGTTTTCA
Statistics
Matches: 157, Mismatches: 26, Indels: 46
0.69 0.11 0.20
Matches are distributed among these distances:
20 4 0.03
21 21 0.13
22 9 0.06
23 47 0.30
24 19 0.12
25 6 0.04
26 6 0.04
27 16 0.10
28 21 0.13
29 7 0.04
30 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (23 bp):
AGGTTAGGGTTTTTAATTAAATT
Found at i:26680610 original size:28 final size:29
Alignment explanation
Indices: 26680551--26680621 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
26680541 CAAATCTAAC
* *
26680551 ATTACGTTAAGGTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTAGGGTTTTTAATTAA
26680580 ATTAGGTTAGGGTTAGGGTTTTT-ATTAA
1 ATTAGGTTAGGGTTAGGGTTTTTAATTAA
26680608 ATTAGGTTAGGGTT
1 ATTAGGTTAGGGTT
26680622 TTTATTTAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (29 bp):
ATTAGGTTAGGGTTAGGGTTTTTAATTAA
Found at i:26680638 original size:21 final size:20
Alignment explanation
Indices: 26680588--26680651 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
26680578 AAATTAGGTT
*
26680588 AGGGTTAGGGTTTTTATTAA
1 AGGGTTAGGGTTTTTATTTA
*
26680608 ATTAGGTTAGGGTTTTTATTTA
1 A--GGGTTAGGGTTTTTATTTA
* *
26680630 AGGGTTTAGGGCTTTTAATTA
1 AGGG-TTAGGGTTTTTATTTA
26680651 A
1 A
26680652 ATTAAGTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.08
21 15 0.42
22 18 0.50
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.47
Consensus pattern (20 bp):
AGGGTTAGGGTTTTTATTTA
Found at i:26680668 original size:29 final size:29
Alignment explanation
Indices: 26680635--26680697 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
26680625 ATTTAAGGGT
26680635 TTAGGGCTTTTAATTAAATTA-AGTTAGAG
1 TTAGGGCTTTTAATTAAATTAGA-TTAGAG
* * *
26680664 TTAGGGTTTTTAATTGAATTAGATTAGGG
1 TTAGGGCTTTTAATTAAATTAGATTAGAG
26680693 TTAGG
1 TTAGG
26680698 ATTTTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 29 0.97
30 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (29 bp):
TTAGGGCTTTTAATTAAATTAGATTAGAG
Found at i:26680702 original size:29 final size:29
Alignment explanation
Indices: 26680642--26680709 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
26680632 GGTTTAGGGC
*
26680642 TTTTAATTAAATTAAGTTAGAGTTAGGGT
1 TTTTAATTAAATTAAGTTAGAGTTAGGAT
* *
26680671 TTTTAATTGAATT-AGATTAGGGTTAGGAT
1 TTTTAATTAAATTAAG-TTAGAGTTAGGAT
*
26680700 TTTTATTTAA
1 TTTTAATTAA
26680710 GGGTTTAGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 2 0.06
29 31 0.94
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (29 bp):
TTTTAATTAAATTAAGTTAGAGTTAGGAT
Found at i:26680706 original size:79 final size:72
Alignment explanation
Indices: 26680563--26680740 Score: 257
Period size: 79 Copynumber: 2.4 Consensus size: 72
26680553 TACGTTAAGG
* * *
26680563 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTAAATTAGGTTAGGGTTTTTATT
1 TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTATTAAATTAGGTTAGGATTTTTATT
26680628 TAAGGGT
66 TAAGGGT
*
26680635 TTAGGGCTTTTAATTAAATTAAGTTAGAGTTAGGGTTTTTAATTGAATTAGATTAGGGTTAGGAT
1 TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTT-ATT--A--A-ATTA-GGTTAGGAT
26680700 TTTTATTTAAGGGT
59 TTTTATTTAAGGGT
26680714 TTAGGGCTTTTAATTAAATTAGGTTAG
1 TTAGGGCTTTTAATTAAATTAGGTTAG
26680741 GGTTTTTAAT
Statistics
Matches: 94, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
72 37 0.39
73 3 0.03
75 1 0.01
77 1 0.01
78 4 0.04
79 48 0.51
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.47
Consensus pattern (72 bp):
TTAGGGCTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTATTAAATTAGGTTAGGATTTTTATT
TAAGGGT
Found at i:26680718 original size:50 final size:50
Alignment explanation
Indices: 26680664--26681218 Score: 654
Period size: 50 Copynumber: 10.9 Consensus size: 50
26680654 TAAGTTAGAG
* * *
26680664 TTAGGGTTTTTAATTGAATTAGATTAGGGTTAGGATTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* *
26680714 TTAGGGCTTTTAATT-AA--A--TTA-GGTTAGGGTTTTTAATTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
*
26680758 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* ** *
26680808 TTAGGGTTTTTAATTAAATTATGTTAATGTTAGGGTTTTCATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* **
26680858 TTAGGGTTTTTAATTGAATTAGACTAGGGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* * *
26680908 TTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTTTAAT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGG-------T
*
26680965 TAAGGGTTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
1 T-----T--AGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* *
26681022 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* *
26681072 TTAGGGTTTTTAATTGAATTAGGTTAAGGTTAGGGTTTTTATTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
* * ** **
26681122 TTAGGGCTTTTAATTAAATTAGATTAGGGTTAGGGTTATTGGTAGAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTT-TTTATTTAAGGGT
* * * *
26681173 TTAGGGTTTTTAAATGAATTAGGTTAGGATTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAA
26681219 ATTAGGTTAG
Statistics
Matches: 433, Mismatches: 51, Indels: 42
0.82 0.10 0.08
Matches are distributed among these distances:
44 35 0.08
45 5 0.01
47 2 0.00
49 5 0.01
50 296 0.68
51 41 0.09
52 1 0.00
57 4 0.01
62 1 0.00
64 43 0.10
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (50 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGT
Found at i:26680724 original size:21 final size:21
Alignment explanation
Indices: 26680689--26680824 Score: 96
Period size: 21 Copynumber: 6.0 Consensus size: 21
26680679 GAATTAGATT
* *
26680689 AGGG-TTAGGATTTTTATTTA
1 AGGGTTTAGGGTTTTTAATTA
*
26680709 AGGGTTTAGGGCTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATT-A
*
26680731 ATTAGG-TTAGGGTTTTTAATTA
1 A--GGGTTTAGGGTTTTTAATTA
26680753 AGGGTTTAGGGTTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATT-A
* * *
26680775 ATTAGGTTAGGGTTAGGGTTTTCATTTA
1 A--GGGTT-----TAGGGTTTTTAATTA
26680803 AGGGTTTAGGGTTTTTAATTA
1 AGGGTTTAGGGTTTTTAATTA
26680824 A
1 A
26680825 ATTATGTTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
20 6 0.07
21 41 0.45
22 6 0.07
23 14 0.15
24 6 0.07
26 4 0.04
28 2 0.02
29 12 0.13
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.46
Consensus pattern (21 bp):
AGGGTTTAGGGTTTTTAATTA
Found at i:26680908 original size:20 final size:21
Alignment explanation
Indices: 26680883--26680924 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26680873 GAATTAGACT
* *
26680883 AGGG-TTAGGGTTTTTATTTA
1 AGGGTTTAGGGCTTTTAATTA
26680903 AGGGTTTAGGGCTTTTAATTA
1 AGGGTTTAGGGCTTTTAATTA
26680924 A
1 A
26680925 ATCAGGTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (21 bp):
AGGGTTTAGGGCTTTTAATTA
Found at i:26680958 original size:14 final size:14
Alignment explanation
Indices: 26680939--26680973 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
26680929 GGTTAGGGTT
26680939 AGGGTTTTTAATTA
1 AGGGTTTTTAATTA
26680953 AGGGTTTTTAATTA
1 AGGGTTTTTAATTA
26680967 AGGGTTT
1 AGGGTTT
26680974 AGGGTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (14 bp):
AGGGTTTTTAATTA
Found at i:26680961 original size:64 final size:64
Alignment explanation
Indices: 26680889--26681023 Score: 225
Period size: 64 Copynumber: 2.1 Consensus size: 64
26680879 GACTAGGGTT
*
26680889 AGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTA
1 AGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTA
* * * *
26680953 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTA
1 AGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTA
26681017 AGGGTTT
1 AGGGTTT
26681024 AGGGCTTTTA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (64 bp):
AGGGTTTTTAATTAAGGGTTTAGGGCTTTTAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTA
Found at i:26680978 original size:21 final size:21
Alignment explanation
Indices: 26680953--26681038 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
26680943 TTTTTAATTA
26680953 AGGGTTTTTAATTAAGGGTTT
1 AGGGTTTTTAATTAAGGGTTT
*
26680974 AGGGTTTTTAATTGAATTAGGTTAGGGTT
1 AGGGTTTTTAATT-AA--GGGTT-----T
*
26681003 AGGGTTTTTATTTAAGGGTTT
1 AGGGTTTTTAATTAAGGGTTT
*
26681024 AGGGCTTTTAATTAA
1 AGGGTTTTTAATTAA
26681039 ATTAGGTTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
21 27 0.52
22 2 0.04
24 4 0.08
26 4 0.08
28 2 0.04
29 13 0.25
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (21 bp):
AGGGTTTTTAATTAAGGGTTT
Found at i:26680986 original size:164 final size:164
Alignment explanation
Indices: 26680789--26681123 Score: 517
Period size: 164 Copynumber: 2.0 Consensus size: 164
26680779 GGTTAGGGTT
* * *
26680789 AGGGTTTTCATTTAAGGGTTTAGGGTTTTTAATTAAATTATGTTAATGTTAGGGTTTTCATTTAA
1 AGGGTTTTCAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTCATTTAA
* * *
26680854 GGGTTTAGGGTTTTTAATTGAATTAGACTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTT
66 GGGTTTAGGGCTTTTAATTAAATTAGACTAGGGTTAGGGTATTTATTTAAGGGTTTAGGGCTTTT
*
26680919 AATTAAATCAGGTTAGGGTTAGGGTTTTTAATTA
131 AATTAAATCAGGTTAAGGTTAGGGTTTTTAATTA
* * * *
26680953 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTAA
1 AGGGTTTTCAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTCATTTAA
** *
26681018 GGGTTTAGGGCTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTATTTAAGGGTTTAGGGTTTTT
66 GGGTTTAGGGCTTTTAATTAAATTAGACTAGGGTTAGGGTATTTATTTAAGGGTTTAGGGCTTTT
* * *
26681083 AATTGAATTAGGTTAAGGTTAGGGTTTTTATTTA
131 AATTAAATCAGGTTAAGGTTAGGGTTTTTAATTA
26681117 AGGGTTT
1 AGGGTTT
26681124 AGGGCTTTTA
Statistics
Matches: 154, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
164 154 1.00
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (164 bp):
AGGGTTTTCAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTCATTTAA
GGGTTTAGGGCTTTTAATTAAATTAGACTAGGGTTAGGGTATTTATTTAAGGGTTTAGGGCTTTT
AATTAAATCAGGTTAAGGTTAGGGTTTTTAATTA
Found at i:26681018 original size:214 final size:214
Alignment explanation
Indices: 26680739--26681158 Score: 725
Period size: 214 Copynumber: 2.0 Consensus size: 214
26680729 AAATTAGGTT
26680739 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAA
1 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAA
* * *
26680804 GGGTTTAGGGTTTTTAATTAAATTATGTTAATGTTAGGGT-TTTCATTTAAGGGTTTAGGGTTTT
66 GGGTTTAGGGCTTTTAATTAAATTAGGTTAAGGTTAGGGTATTT-ATTTAAGGGTTTAGGGTTTT
* *
26680868 TAATTGAATTAGACTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATCAGGTT
130 TAATTGAATTAGACTAAGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATCAGATT
26680933 AGGGTTAGGGTTTTTAATTA
195 AGGGTTAGGGTTTTTAATTA
* *
26680953 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTAA
1 AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAA
*
26681018 GGGTTTAGGGCTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTATTTAAGGGTTTAGGGTTTTT
66 GGGTTTAGGGCTTTTAATTAAATTAGGTTAAGGTTAGGGTATTTATTTAAGGGTTTAGGGTTTTT
** *
26681083 AATTGAATTAGGTTAAGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGATTA
131 AATTGAATTAGACTAAGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATCAGATTA
26681148 GGGTTAGGGTT
196 GGGTTAGGGTT
26681159 ATTGGTAGAA
Statistics
Matches: 194, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
214 191 0.98
215 3 0.02
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.46
Consensus pattern (214 bp):
AGGGTTTTTAATTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTCATTTAA
GGGTTTAGGGCTTTTAATTAAATTAGGTTAAGGTTAGGGTATTTATTTAAGGGTTTAGGGTTTTT
AATTGAATTAGACTAAGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATCAGATTA
GGGTTAGGGTTTTTAATTA
Found at i:26681156 original size:29 final size:30
Alignment explanation
Indices: 26681117--26681230 Score: 86
Period size: 29 Copynumber: 4.1 Consensus size: 30
26681107 TTTTTATTTA
*
26681117 AGGGTTTAGGGCTTTTAATTAAATTAGATT
1 AGGGTTTAGGGTTTTTAATTAAATTAGATT
**
26681147 AGGG-TTAGGG---TT-ATT--GGTAGA--
1 AGGGTTTAGGGTTTTTAATTAAATTAGATT
* * *
26681168 AGGGTTTAGGGTTTTTAAATGAATTAGGTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGATT
* *
26681198 A-GGATTAGGGTTTTTAATTAAATTAGGTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGATT
26681227 AGGG
1 AGGG
26681231 CTTTTATTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
21 4 0.06
22 6 0.09
23 4 0.06
25 5 0.08
26 4 0.06
28 3 0.05
29 32 0.49
30 7 0.11
ACGTcount: A:0.28, C:0.01, G:0.31, T:0.40
Consensus pattern (30 bp):
AGGGTTTAGGGTTTTTAATTAAATTAGATT
Found at i:26681235 original size:23 final size:23
Alignment explanation
Indices: 26681196--26681308 Score: 124
Period size: 23 Copynumber: 5.0 Consensus size: 23
26681186 ATGAATTAGG
26681196 TTAGGATTAGGGTTTTTAATTAAA
1 TTAGG-TTAGGGTTTTTAATTAAA
* *
26681220 TTAGGTTAGGGCTTTT-ATTTAA
1 TTAGGTTAGGGTTTTTAATTAAA
* * *
26681242 --GGGTTTAGAGCTTTTAATTAAA
1 TTAGG-TTAGGGTTTTTAATTAAA
**
26681264 TTAGACTAGGGTTTTTAATTAAA
1 TTAGGTTAGGGTTTTTAATTAAA
26681287 TTAGGTTAGGGTTTTTAATTAA
1 TTAGGTTAGGGTTTTTAATTAA
26681309 GGGTTTTGAA
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
20 2 0.03
21 10 0.14
22 10 0.14
23 45 0.62
24 6 0.08
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.46
Consensus pattern (23 bp):
TTAGGTTAGGGTTTTTAATTAAA
Found at i:26681870 original size:18 final size:18
Alignment explanation
Indices: 26681836--26681870 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26681826 CGGAAAAGGA
**
26681836 TACATATAAGGGTTAGGG
1 TACATATAAGGACTAGGG
26681854 TACATATAAGGACTAGG
1 TACATATAAGGACTAGG
26681871 AAACGCACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (18 bp):
TACATATAAGGACTAGGG
Found at i:26682528 original size:7 final size:7
Alignment explanation
Indices: 26682518--26682542 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26682508 TTATATACAT
26682518 AATACTA
1 AATACTA
26682525 AATACTA
1 AATACTA
26682532 AATACTA
1 AATACTA
26682539 AATA
1 AATA
26682543 TCAATCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:26683750 original size:51 final size:52
Alignment explanation
Indices: 26683690--26683801 Score: 145
Period size: 52 Copynumber: 2.2 Consensus size: 52
26683680 TTAAAAAAGA
* * * * *
26683690 AAATTGAGAAGAAATTTAAATTAAATATG-AATTTGAGAGAATTTTTGAAGG
1 AAATTGAGAAGAAATTGAAATTAAAGAAGAAAATTGAGAGAATTTTGGAAGG
***
26683741 AAATTGAGAAGAAATTGAAATTTTGGAAGAAAATTGAGAGAATTTTGGAAGG
1 AAATTGAGAAGAAATTGAAATTAAAGAAGAAAATTGAGAGAATTTTGGAAGG
26683793 AAATTGAGA
1 AAATTGAGA
26683802 GAATTTTGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
51 23 0.44
52 29 0.56
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.29
Consensus pattern (52 bp):
AAATTGAGAAGAAATTGAAATTAAAGAAGAAAATTGAGAGAATTTTGGAAGG
Found at i:26683787 original size:22 final size:22
Alignment explanation
Indices: 26683759--26683824 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
26683749 AAGAAATTGA
*
26683759 AATTTTGGAAGAAAATTGAGAG
1 AATTTTGGAAGGAAATTGAGAG
26683781 AATTTTGGAAGGAAATTGAGAG
1 AATTTTGGAAGGAAATTGAGAG
*
26683803 AATTTTGGAAGGAATTTGAGAG
1 AATTTTGGAAGGAAATTGAGAG
26683825 GGATTGAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.29
Consensus pattern (22 bp):
AATTTTGGAAGGAAATTGAGAG
Found at i:26684501 original size:31 final size:30
Alignment explanation
Indices: 26684466--26684533 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
26684456 AACCATTTGG
* *
26684466 AAAGATTTGA-CATTCATTTGAGCATTTTATA
1 AAAGATTTGACCATT-ATATGACCATTTTA-A
*
26684497 AAAGATTAGACCATTATATGACCATTTTAA
1 AAAGATTTGACCATTATATGACCATTTTAA
26684527 AAA-ATTT
1 AAAGATTT
26684534 AACTTTACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 3 0.09
30 4 0.12
31 21 0.66
32 4 0.12
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (30 bp):
AAAGATTTGACCATTATATGACCATTTTAA
Found at i:26696127 original size:19 final size:19
Alignment explanation
Indices: 26696099--26696138 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
26696089 ATATATTATA
*
26696099 TATATTCATGTATTAAAAT
1 TATATACATGTATTAAAAT
26696118 TATATACATGTATTAAAAT
1 TATATACATGTATTAAAAT
26696137 TA
1 TA
26696139 AATAATCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TATATACATGTATTAAAAT
Found at i:26696154 original size:2 final size:2
Alignment explanation
Indices: 26696147--26696203 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
26696137 TAAATAATCT
* * * * *
26696147 TA TA TA TA TT TA TA TA CA TA TA AA TC T- TA TA TA TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
26696188 TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA
26696204 CATGTATTAA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:26696160 original size:39 final size:39
Alignment explanation
Indices: 26696117--26696235 Score: 131
Period size: 41 Copynumber: 3.1 Consensus size: 39
26696107 TGTATTAAAA
26696117 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
1 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
* *
26696156 TTATATACA--TA-TAAATCTTATATATATATTTATATATATAT
1 TTATATACATGTATTAAA-ATTA-A-ATA-ATCT-TATATATAT
*
26696197 TTATATACATGTATTAAAATTAAATAA-C-TAAATATAT
1 TTATATACATGTATTAAAATTAAATAATCTTATATATAT
26696234 TT
1 TT
26696236 GAGGATTCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
36 4 0.06
37 15 0.22
38 1 0.01
39 12 0.18
40 4 0.06
41 21 0.31
42 1 0.01
43 5 0.07
44 4 0.06
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (39 bp):
TTATATACATGTATTAAAATTAAATAATCTTATATATAT
Found at i:26696167 original size:12 final size:12
Alignment explanation
Indices: 26696147--26696203 Score: 69
Period size: 12 Copynumber: 4.3 Consensus size: 12
26696137 TAAATAATCT
26696147 TATATATATTTA
1 TATATATATTTA
26696159 TATACATATAAATCTTA
1 TAT--ATAT--AT-TTA
26696176 TATATATATTTA
1 TATATATATTTA
26696188 TATATATATTTA
1 TATATATATTTA
26696200 TATA
1 TATA
26696204 CATGTATTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
12 22 0.55
13 2 0.05
14 4 0.10
15 4 0.10
16 2 0.05
17 6 0.15
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATATATTTA
Found at i:26700219 original size:21 final size:21
Alignment explanation
Indices: 26700178--26700220 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
26700168 AATAAAGTAG
*
26700178 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
26700199 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
26700220 A
1 A
26700221 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:26700529 original size:42 final size:44
Alignment explanation
Indices: 26700444--26700533 Score: 141
Period size: 42 Copynumber: 2.1 Consensus size: 44
26700434 ATTACAACAT
26700444 CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
*
26700488 CATTCCATTCAACCAAACA-ATTG-A-ACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATA-AGAATACTATTACAGTTCTATTC
26700530 CATT
1 CATT
26700534 ACAACTCTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
42 22 0.50
43 2 0.05
44 20 0.45
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACATAAGAATACTATTACAGTTCTATTC
Found at i:26700536 original size:16 final size:16
Alignment explanation
Indices: 26700515--26700554 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26700505 CAATTGAACT
26700515 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
** *
26700531 ATTACAACTCTATTCT
1 ATTACAGTTCTATTCC
26700547 ATTACAGT
1 ATTACAGT
26700555 GAACCAAACG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:26701657 original size:25 final size:25
Alignment explanation
Indices: 26701625--26701687 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
26701615 TTAAACTAAG
*
26701625 CAGAATACAGATTTAACATACAATC
1 CAGAATACAGATTGAACATACAATC
*
26701650 CAGAATACAAATTGAACATACAATC
1 CAGAATACAGATTGAACATACAATC
26701675 CAGAATACAGATT
1 CAGAATACAGATT
26701688 CCAAAATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (25 bp):
CAGAATACAGATTGAACATACAATC
Found at i:26705919 original size:35 final size:35
Alignment explanation
Indices: 26705866--26706004 Score: 131
Period size: 35 Copynumber: 4.0 Consensus size: 35
26705856 AAGGTATGTG
** *
26705866 TATATATGCAATATATATATATGCATGGGTTTTGT
1 TATATATATAATATATATATATGTATGGGTTTTGT
* * * *
26705901 TATATATATAATACATATATGTGTATGGGTCTTGA
1 TATATATATAATATATATATATGTATGGGTTTTGT
* * *
26705936 T-TATATATAATATATATATGCATATATGGGTATTAT
1 TATATATATAATATATATAT--ATGTATGGGTTTTGT
* *
26705972 TTTATATATAATATATATGTA--TATGGGTTTTGT
1 TATATATATAATATATATATATGTATGGGTTTTGT
26706005 AATGTTTGCG
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
33 10 0.12
34 17 0.20
35 30 0.35
36 11 0.13
37 17 0.20
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (35 bp):
TATATATATAATATATATATATGTATGGGTTTTGT
Found at i:26706289 original size:36 final size:36
Alignment explanation
Indices: 26706231--26706312 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 36
26706221 TTGTGAACCA
* * *
26706231 TGTTAACTTAGTGAATTATATTATTATGGAAAACTG
1 TGTTAATTTGGTGAATTATATTAATATGGAAAACTG
* * **
26706267 TGTTAATTTGGTGATTTGTATTAATATGGCGAACTG
1 TGTTAATTTGGTGAATTATATTAATATGGAAAACTG
*
26706303 TATTAATTTG
1 TGTTAATTTG
26706313 CCAAACTATG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (36 bp):
TGTTAATTTGGTGAATTATATTAATATGGAAAACTG
Found at i:26713276 original size:13 final size:14
Alignment explanation
Indices: 26713230--26713276 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
26713220 GATTCATGTC
26713230 ATGAAATA-ATTAT
1 ATGAAATAGATTAT
*
26713243 ATG-AATCGATTAT
1 ATGAAATAGATTAT
26713256 ATGAAAATAGA-TAT
1 ATG-AAATAGATTAT
26713270 ATGAAAT
1 ATGAAAT
26713277 GGAACATTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
14 6 0.21
15 5 0.17
ACGTcount: A:0.51, C:0.02, G:0.13, T:0.34
Consensus pattern (14 bp):
ATGAAATAGATTAT
Found at i:26716442 original size:29 final size:29
Alignment explanation
Indices: 26716410--26716467 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
26716400 CATTTAAACC
*
26716410 CTTTTTTAT-CTTATTTATTTATTTATTTA
1 CTTTTTT-TGCTTATTTATATATTTATTTA
*
26716439 CTTTTTTTGCTTATTTATATCTTTATTTA
1 CTTTTTTTGCTTATTTATATATTTATTTA
26716468 AACTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.71
Consensus pattern (29 bp):
CTTTTTTTGCTTATTTATATATTTATTTA
Found at i:26717244 original size:112 final size:110
Alignment explanation
Indices: 26716942--26717270 Score: 541
Period size: 110 Copynumber: 3.0 Consensus size: 110
26716932 CATCAAAAAC
* *
26716942 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTTGAGAAAACGTGCCCTAAGGTACT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
26717007 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* * *
26717052 AAAAATTTTCAAAAAAGGCAATGTTTTGCGTTTGGAAAATTCGAGAGAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
26717117 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
*
26717162 AAAAATTTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
1 AAAAA-TTTTC-AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
* * * *
26717227 CTGGGTGTCGATATTTCTCGTTTAACCAAATAGCCAAATATCCT
64 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCT
26717271 CTCGAATTTC
Statistics
Matches: 203, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
110 109 0.54
111 5 0.02
112 89 0.44
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (110 bp):
AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
Found at i:26721487 original size:14 final size:14
Alignment explanation
Indices: 26721465--26721509 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
26721455 AAAAGAAAAG
26721465 AAAA-GAAAAATG-
1 AAAATGAAAAATGA
*
26721477 AGAATGAAAAATGA
1 AAAATGAAAAATGA
26721491 AAAATG-AAAATGA
1 AAAATGAAAAATGA
26721504 AAAATG
1 AAAATG
26721510 GAGAGGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 3 0.10
13 21 0.72
14 5 0.17
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:26721491 original size:7 final size:7
Alignment explanation
Indices: 26721465--26721509 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
26721455 AAAAGAAAAG
26721465 AAAA-GA
1 AAAATGA
26721471 AAAATG-
1 AAAATGA
*
26721477 AGAATGA
1 AAAATGA
26721484 AAAATGA
1 AAAATGA
26721491 AAAATG-
1 AAAATGA
26721497 AAAATGA
1 AAAATGA
26721504 AAAATG
1 AAAATG
26721510 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 15 0.44
7 19 0.56
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:26721494 original size:20 final size:20
Alignment explanation
Indices: 26721453--26721509 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
26721443 ACTCTGAGTC
*
26721453 AAAAAAGAAAA-G-AAAA-G
1 AAAAATGAAAATGAAAAATG
*
26721470 AAAAATGAGAATGAAAAATG
1 AAAAATGAAAATGAAAAATG
26721490 AAAAATGAAAATGAAAAATG
1 AAAAATGAAAATGAAAAATG
26721510 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.26
18 1 0.03
19 4 0.12
20 20 0.59
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.11
Consensus pattern (20 bp):
AAAAATGAAAATGAAAAATG
Found at i:26722901 original size:43 final size:43
Alignment explanation
Indices: 26722768--26722903 Score: 107
Period size: 43 Copynumber: 3.2 Consensus size: 43
26722758 GGAGCTGGAT
* * *
26722768 CTTGCCTTTCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGAGTTAACAGCGAAGCAGATCGAAAACAAAGC
* * * * * * * * *
26722811 CTTGCC-TCCATCAGTT-GCAGTGGAGCTGGTTGAAGAAGCAGA-T
1 CTTGCCTTCC-TGAGTTAACAGCGAAGCAGATCGAA-AA-CAAAGC
*
26722854 CTTGCCTTCCTGTGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGAGTTAACAGCGAAGCAGATCGAAAACAAAGC
26722897 CTTGCCT
1 CTTGCCT
26722904 CCATCGGTTG
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
42 16 0.25
43 31 0.48
44 18 0.28
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (43 bp):
CTTGCCTTCCTGAGTTAACAGCGAAGCAGATCGAAAACAAAGC
Found at i:26722914 original size:86 final size:85
Alignment explanation
Indices: 26722765--26723205 Score: 656
Period size: 86 Copynumber: 5.3 Consensus size: 85
26722755 AGTGGAGCTG
* * *
26722765 GATCTTGCCTTTCTGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26722830 GTGGAGCTGGTTGAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
*
26722851 GATCTTGCCTTCCTGTGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26722916 GTGGAGC----T--G--G-A
66 GTGGAGCTGGTTAAGAAGCA
* *
26722927 -A-CTTACCTTCCTGTGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
26722990 GTGGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
* *
26723011 GATCTTGCCTTCCTGCATTAATAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGG--GCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
26723074 GTAGAGCTGGTTAAAGAAGCA
66 GTGGAGCTGGTT-AAGAAGCA
*
26723095 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCACCGGTTGCA
1 GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
*
26723160 GTGGAGCTGGTTATAGAAACA
66 GTGGAGCTGGTTA-AGAAGCA
26723181 GATCTTGCCTTCCTGCGTTAACAGC
1 GATCTTGCCTTCCTGCGTTAACAGC
26723206 AGACCAGACT
Statistics
Matches: 325, Mismatches: 15, Indels: 30
0.88 0.04 0.08
Matches are distributed among these distances:
74 68 0.21
75 1 0.00
76 1 0.00
77 1 0.00
78 1 0.00
79 1 0.00
81 1 0.00
82 1 0.00
83 1 0.00
84 81 0.25
85 2 0.01
86 166 0.51
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (85 bp):
GATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCA
GTGGAGCTGGTTAAGAAGCA
Found at i:26722991 original size:160 final size:159
Alignment explanation
Indices: 26722721--26723205 Score: 695
Period size: 160 Copynumber: 3.0 Consensus size: 159
26722711 AGATTAGTGA
* * * *
26722721 AGATCAAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGATCTTGCCTTTCTGCGTTAA
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGAACTTGCCTTCCTGCGTTAA
* *
26722786 CAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTGAAGAAGCA
66 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT-AAGAAGCA
*
26722851 GATCTTGCCTTCCTGTGTTAACAGCGAAGC
130 GATCTTGCCTTCCTGCGTTAACAGCGAAGC
* *
26722881 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGAACTTACCTTCCTGTGTTAA
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGAACTTGCCTTCCTGCGTTAA
26722946 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCA
66 CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTT-AAGAAGCA
* *
26723011 GATCTTGCCTTCCTGCATTAATAGCGAAGC
130 GATCTTGCCTTCCTGCGTTAACAGCGAAGC
*
26723041 AGATCGAAAACAAAGCCTTGCCTCCATCGG--GCAGTAGAGCTGGTTAAAGAAGCAGATCTTGCC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGC----T---G--G-A-A-CTTGCC
*
26723104 TTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCACCGGTTGCAGTGGAGCTG
54 TTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
*
26723169 GTTATAGAAACAGATCTTGCCTTCCTGCGTTAACAGC
119 GTTA-AGAAGCAGATCTTGCCTTCCTGCGTTAACAGC
26723206 AGACCAGACT
Statistics
Matches: 293, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
158 9 0.03
160 178 0.61
162 1 0.00
165 1 0.00
167 1 0.00
168 1 0.00
169 2 0.01
170 100 0.34
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (159 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGAACTTGCCTTCCTGCGTTAA
CAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAGAAGCAG
ATCTTGCCTTCCTGCGTTAACAGCGAAGC
Found at i:26723265 original size:44 final size:44
Alignment explanation
Indices: 26723217--26723496 Score: 190
Period size: 43 Copynumber: 6.5 Consensus size: 44
26723207 GACCAGACTG
* *
26723217 AAGACCA-CATATCTTATCTCCCTAAACAGTAGTGGAGCAGATCA
1 AAGACCACCA-ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * * * * * **
26723261 AAGACGGA-AAATCTTATCTTCCTAAGCAGTAGTGAAGCTGATTT
1 AAGAC-CACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
26723305 AA-ACTACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCA
1 AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
**** *
26723348 AAGA-TGGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAAATC-
1 AAGACCACCA-ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
26723391 --G--CATCAAGTCTTATCTCCCTAAGCAGTTGTGGAGCAGA-CA
1 AAGACCACCAA-TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
26723431 GAAGA-AACCAATCCTATCTCCCTAAGTAGTAGTGGAGTAGAT-A
1 -AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
*
26723474 GAAGA-AACCAATCCTATCTCCCT
1 -AAGACCACCAATCCTATCTCCCT
26723497 GAAGTTATAG
Statistics
Matches: 188, Mismatches: 37, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
39 2 0.01
40 28 0.15
41 1 0.01
42 1 0.01
43 84 0.45
44 70 0.37
45 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (44 bp):
AAGACCACCAATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCA
Found at i:26725140 original size:30 final size:29
Alignment explanation
Indices: 26725098--26725154 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
26725088 ATTTAAACCC
*
26725098 TTTTTTATCTTATTTATTTATTTATTTAG
1 TTTTTTATCTTATTTATATATTTATTTAG
* *
26725127 TTTTTTTTGCTTATTTATATCTTTATTT
1 TTTTTTAT-CTTATTTATATATTTATTT
26725155 TAAACTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.74
Consensus pattern (29 bp):
TTTTTTATCTTATTTATATATTTATTTAG
Found at i:26725912 original size:112 final size:110
Alignment explanation
Indices: 26725629--26725957 Score: 505
Period size: 110 Copynumber: 3.0 Consensus size: 110
26725619 CATCAAAAAC
* *
26725629 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTTGAGAAAACGTGCCCTAAGGTACT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* *
26725694 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* * *
26725739 AAAAATTTTCAAAAAAGGCAATGTTTTGCGTTTGGAAAATTCGAGAGAACGTGCCCTAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* *
26725804 GGGTGTCGATTTTTCTCGTTCAACCAAATGGGTAACTATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* *
26725849 AAAATTTTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
1 AAAA-ATTTTC-AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
* * * *
26725914 CTGGGTGTCGATATTTCTCGTTTAACCAAATAGCCAAATATCCT
64 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCT
26725958 CTCGAATTTC
Statistics
Matches: 197, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
110 105 0.53
111 5 0.03
112 87 0.44
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (110 bp):
AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
Found at i:26739913 original size:47 final size:47
Alignment explanation
Indices: 26739849--26740414 Score: 938
Period size: 47 Copynumber: 12.0 Consensus size: 47
26739839 AATGATAGTG
*
26739849 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26739896 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26739943 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
* *
26739992 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26740039 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26740086 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26740133 AGG-CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26740179 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
26740225 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAAGTAATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26740272 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
26740319 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * * * *
26740366 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26740413 AG
1 AG
26740415 TCCCGAAGGG
Statistics
Matches: 494, Mismatches: 21, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 92 0.19
47 355 0.72
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:26740295 original size:233 final size:235
Alignment explanation
Indices: 26739849--26740414 Score: 947
Period size: 233 Copynumber: 2.4 Consensus size: 235
26739839 AATGATAGTG
26739849 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
*
26739914 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--
* ** *
26739979 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
129 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAAGTAATAAGGCC
26740044 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
194 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26740086 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATAGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
26740150 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-A
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
26740214 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAAGTAATAAGGCCTA
131 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAAGTAATAAGGCCTA
*
26740279 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
196 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * *
26740319 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
* * *
26740384 GATGGATGTGAAAGTGCATAAATGTGATAAG
66 GATGAATGTGAAAGTGTATATATGTGATAAG
26740415 TCCCGAAGGG
Statistics
Matches: 310, Mismatches: 18, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
233 148 0.48
234 37 0.12
236 76 0.25
237 49 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (235 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAAGTAATAAGGCCTA
ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:26740589 original size:37 final size:37
Alignment explanation
Indices: 26740533--26740611 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26740523 CCGAGCTCTA
* *
26740533 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26740570 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26740607 AAGAC
1 AAGAC
26740612 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26742524 original size:43 final size:43
Alignment explanation
Indices: 26742476--26742578 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
26742466 TTGGTTTTCA
*
26742476 GCACTAAGTGTGTGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
26742519 GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
26742562 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGTGGGC
26742579 TTGAATTGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.13, G:0.36, T:0.29
Consensus pattern (43 bp):
GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26742595 original size:29 final size:29
Alignment explanation
Indices: 26742560--26742633 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
26742550 GTTGTGAGAT
* * * *
26742560 TGGCACTAAGTGTGCGGGCTTGAATTGCA
1 TGGCACTAAGTGTGCGAGCTTAAAGTACA
*
26742589 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTAAAGTACA
26742618 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26742634 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAGTACA
Found at i:26743070 original size:40 final size:40
Alignment explanation
Indices: 26743026--26743179 Score: 236
Period size: 40 Copynumber: 3.9 Consensus size: 40
26743016 TTACTAAATT
*
26743026 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
26743066 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
26743106 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * *
26743146 CGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
26743180 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:26743081 original size:80 final size:80
Alignment explanation
Indices: 26742944--26743173 Score: 225
Period size: 80 Copynumber: 2.9 Consensus size: 80
26742934 TCGAATGATG
** * * *
26742944 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** *
26743005 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
* *
26743024 TTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
* **
26743089 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * * *
26743104 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
26743169 CATGC
66 CATGC
26743174 TGGTGACGTG
Statistics
Matches: 125, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.01
80 100 0.80
81 18 0.14
82 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:26743159 original size:120 final size:120
Alignment explanation
Indices: 26742944--26743174 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
26742934 TCGAATGATG
** *
26742944 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
* * * *
26743009 GTGCGAGTTACTAAATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
** * *
26743064 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
* * *
26743127 TTCGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCT
63 TTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
26743175 GGTGACGTGT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 20 0.21
122 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
Found at i:26747143 original size:24 final size:24
Alignment explanation
Indices: 26747116--26747167 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26747106 TTAGTAAGTC
*
26747116 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26747140 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26747164 AAAT
1 AAAT
26747168 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26749104 original size:24 final size:24
Alignment explanation
Indices: 26749077--26749128 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26749067 TTAGTAAGTC
*
26749077 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26749101 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26749125 AAAT
1 AAAT
26749129 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26749394 original size:47 final size:47
Alignment explanation
Indices: 26749284--26749709 Score: 683
Period size: 47 Copynumber: 9.0 Consensus size: 47
26749274 AATGATAGTG
26749284 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
*
26749333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26749380 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26749427 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
26749474 AGGCGTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
26749520 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26749567 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
26749614 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * * *
26749661 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26749708 AG
1 AG
26749710 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 45 0.13
47 278 0.78
49 34 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:26749612 original size:187 final size:188
Alignment explanation
Indices: 26749284--26749709 Score: 676
Period size: 187 Copynumber: 2.3 Consensus size: 188
26749274 AATGATAGTG
* *
26749284 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCGTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGAT
* *
26749349 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
64 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
26749414 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
129 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
26749474 AGGCGTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCTAATAGCCGATGT
1 AGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
*
26749538 GATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
26749603 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
131 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* * * * * * *
26749661 GGGCCG-AGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 AGG-CGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26749710 TCCCGAAGGG
Statistics
Matches: 219, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
187 172 0.79
188 15 0.07
190 32 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (188 bp):
AGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
GATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
Found at i:26749884 original size:37 final size:37
Alignment explanation
Indices: 26749828--26749906 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26749818 CCGAGCTCTA
* *
26749828 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26749865 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26749902 AAGAC
1 AAGAC
26749907 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26758903 original size:25 final size:26
Alignment explanation
Indices: 26758875--26758927 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
26758865 AATAATTTTC
* * *
26758875 TTATCCCAATTTTACCC-TGGTAAAA
1 TTATCACAACTTTACCCTTGATAAAA
*
26758900 TTATGACAACTTTACCCTTGATAAAA
1 TTATCACAACTTTACCCTTGATAAAA
26758926 TT
1 TT
26758928 TTCGAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (26 bp):
TTATCACAACTTTACCCTTGATAAAA
Found at i:26759128 original size:6 final size:7
Alignment explanation
Indices: 26759078--26759128 Score: 74
Period size: 6 Copynumber: 7.9 Consensus size: 7
26759068 CTAAATGAAT
26759078 TCATTTC
1 TCATTTC
26759085 TCATTTC
1 TCATTTC
26759092 TCATTTC
1 TCATTTC
26759099 TCATTT-
1 TCATTTC
26759105 TCATTT-
1 TCATTTC
26759111 TCATTT-
1 TCATTTC
26759117 TCATTTC
1 TCATTTC
26759124 T-ATTT
1 TCATTT
26759129 TTATTTCAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.51
7 21 0.49
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.63
Consensus pattern (7 bp):
TCATTTC
Done.