Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 96 of 213
Found at i:26759128 original size:12 final size:13
Alignment explanation
Indices: 26759077--26759135 Score: 86
Period size: 12 Copynumber: 4.6 Consensus size: 13
26759067 TCTAAATGAA
26759077 TTCATTTCTCATT
1 TTCATTTCTCATT
26759090 TCTCATTTCTCATT
1 T-TCATTTCTCATT
26759104 TTCATTT-TCATT
1 TTCATTTCTCATT
26759116 TTCATTTCT-ATT
1 TTCATTTCTCATT
*
26759128 TTTATTTC
1 TTCATTTC
26759136 AATTTTGAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
12 22 0.51
13 8 0.19
14 13 0.30
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
TTCATTTCTCATT
Found at i:26759134 original size:6 final size:6
Alignment explanation
Indices: 26759077--26759122 Score: 65
Period size: 7 Copynumber: 7.2 Consensus size: 6
26759067 TCTAAATGAA
26759077 TTCATT TCTCATT TCTCATT TCTCATT TTCATT TTCATT TTCATT T
1 TTCATT T-TCATT T-TCATT T-TCATT TTCATT TTCATT TTCATT T
26759123 CTATTTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 19 0.49
7 20 0.51
ACGTcount: A:0.15, C:0.22, G:0.00, T:0.63
Consensus pattern (6 bp):
TTCATT
Found at i:26759140 original size:12 final size:11
Alignment explanation
Indices: 26759085--26759141 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 11
26759075 AATTCATTTC
26759085 TCATTTCTCATTT
1 TCATTT-TCA-TT
26759098 CTCATTTTCATTT
1 -TCATTTTCA-TT
26759111 TCATTTTCATT
1 TCATTTTCATT
*
26759122 TCTATTTTTATT
1 TC-ATTTTCATT
26759134 TCAATTTT
1 TC-ATTTT
26759142 GAGAAAACCA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
11 4 0.10
12 24 0.60
13 6 0.15
14 6 0.15
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.65
Consensus pattern (11 bp):
TCATTTTCATT
Found at i:26770097 original size:23 final size:23
Alignment explanation
Indices: 26770067--26770164 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 23
26770057 AAACACATAA
26770067 TATTCTATAAAGCCTTTGTGGCG
1 TATTCTATAAAGCCTTTGTGGCG
* *
26770090 TATTCTATAAAGACTTTGTGGCA
1 TATTCTATAAAGCCTTTGTGGCG
* *
26770113 TATTCTATAAAGCCTTTCTAGCG
1 TATTCTATAAAGCCTTTGTGGCG
* * *
26770136 TATTCTGTGATG-CTTGTGTGGCG
1 TATTCTATAAAGCCTT-TGTGGCG
26770159 TATTCT
1 TATTCT
26770165 GTGATGCCCT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 3 0.05
23 60 0.95
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.42
Consensus pattern (23 bp):
TATTCTATAAAGCCTTTGTGGCG
Found at i:26782377 original size:128 final size:128
Alignment explanation
Indices: 26780831--26782366 Score: 2660
Period size: 128 Copynumber: 12.0 Consensus size: 128
26780821 TCAGTGAAAT
** ** *
26780831 CACAAGTCCTATAACCCTGGGCAGCAGTGGAATAGGTTAGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26780896 CAGTAGCGGAGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26780959 CACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGGTTGGAAATTGCAAATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * *
26781024 CAGTAGGGGAGCAGATCAAAGACGATGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26781087 CACAAGTCCTATGTCCCTGACCGGCAGTGGAATAGGTTAGAAATTGCAGATATTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
*
26781152 CAGTAGCGGAGCAGATCGAAGACGGCG-ATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26781214 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26781279 CAGTAGCGGAGCAGATCAAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCATATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26781342 CACAAGTCTTATGTCCCTGACCAGCAGTAGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26781407 CAGTAGCGGAGCACATCAAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26781470 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26781535 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATTTTCAAGTGTAAGGAAGCAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
26781598 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
*
26781663 CAGTAGCGGAGCAGATCGGAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26781726 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * * *
26781791 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATTTTCAAGTGTAAGAAAGCGGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
26781854 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
*
26781919 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATTTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26781982 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26782047 CAGTAGCGGAGCACATCAAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26782110 CACAAGTCCTATGTCCCTGACCAGTAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* * *
26782175 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATTTTCAAGTGTAAGGAAGTAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26782238 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTAGAAATTGCAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
* *
26782303 CAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGC
66 CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
26782366 C
1 C
26782367 GATGATCCTA
Statistics
Matches: 1332, Mismatches: 75, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
127 121 0.09
128 1211 0.91
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (128 bp):
CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAG
CAGTAGCGGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
Found at i:26782759 original size:217 final size:216
Alignment explanation
Indices: 26782351--26782896 Score: 867
Period size: 217 Copynumber: 2.5 Consensus size: 216
26782341 CAAGTGTAAG
* * * * *
26782351 GAAGCAGATTGAAGCCGATGATCCTATCTCACTGAAGTTGTAGTGGAACACATTAAAGTAATAGA
1 GAAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGA
* * *
26782416 TCTTATCTCTCTGAAGTTGCAGTAGAGTGATCGTATCAGGTCTTACCTCCCTGAAGTCACAGTGG
66 TCTTATCTCTCTGAAGTTGCAGTAGAGAGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGG
* * *
26782481 AGCAGACTAAGAATACAAGTCTTATCCCCCTGAGGTCACAGTGGGGCAGGCGAAAGAAGAAAATC
131 AGCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGAAAGAAGAAAATC
26782546 TTATCTCCCTGAAGTTGCAGT
196 TTATCTCCCTGAAGTTGCAGT
*
26782567 GAAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTTTAGTGGAGCAGATTAAAGTAATAGA
1 GAAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGA
* * *
26782632 TCTAATCTCTCTGAAGTTGCAGTAGAGAGGATCGCATTAGGTCTTACCTTCCTAAAGTCACAGTG
66 TCTTATCTCTCTGAAGTTGCAGTAGAGA-GATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTG
*
26782697 GAGCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGGAAGAAGAAAAT
130 GAGCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGAAAGAAGAAAAT
*
26782762 CTTATCTCCCTGAGGTTGCAGT
195 CTTATCTCCCTGAAGTTGCAGT
* * *
26782784 GGAGCAGATTGAAGTCGATAATTCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGA
1 GAAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGA
* * *
26782849 TCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAAGTATTACC
66 TCTTATCTCTCTGAAGTTGCAGTAGAG-AGATCGCATCAGGTCTTACC
26782897 GACTAGAGAT
Statistics
Matches: 302, Mismatches: 26, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
216 85 0.28
217 216 0.72
218 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (216 bp):
GAAGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAGA
TCTTATCTCTCTGAAGTTGCAGTAGAGAGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGG
AGCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGACGAAAGAAGAAAATC
TTATCTCCCTGAAGTTGCAGT
Found at i:26782856 original size:44 final size:44
Alignment explanation
Indices: 26782353--26782880 Score: 236
Period size: 44 Copynumber: 12.2 Consensus size: 44
26782343 AGTGTAAGGA
** * * *
26782353 AGCAGATTGAAGCCGAT-GATCCTATCTCACTGAAGTTGTAGTGG
1 AGCAGATTGAAG-TAATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
26782397 AACACATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGT--
1 AGCAGATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * * **
26782439 AG-AG--TGATCGT-ATCAGGTCTTACCTCCCTGAAGTCACAGTGG
1 AGCAGATTGA-AGTAAT-AGATCTTATCTCCCTGAAGTTGCAGTGG
* * * * **
26782481 AGCAGACT-AAG-AATACAAGTCTTATCCCCCTGAGGTCACAGTGG
1 AGCAGATTGAAGTAATA-GA-TCTTATCTCCCTGAAGTTGCAGTGG
* ** *
26782525 GGCAGGCGAAAGAAG-AA-A-ATCTTATCTCCCTGAAGTTGCAGTGA
1 AGCA---GATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * **
26782569 AGCAGATTGAAGTCGATA-ATCCTATCTCCCTGAAGTTTTAGTGG
1 AGCAGATTGAAGT-AATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
26782613 AGCAGATTAAAGTAATAGATCTAATCTCTCTGAAGTTGCAGTAG
1 AGCAGATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * * * * * **
26782657 AG-AGGATCGCA-T--TAGGTCTTACCTTCCTAAAGTCACAGTGG
1 AGCA-GATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
* * * * **
26782698 AGCAGACT-AAG-AAAACAAGTCTTATCCCCCTGAAGTCACAGTGG
1 AGCAGATTGAAGTAATA-GA-TCTTATCTCCCTGAAGTTGCAGTGG
* ** * * *
26782742 GGCAGACGGAAG-AAGAAAATCTTATCTCCCTGAGGTTGCAGTGG
1 AGCAGATTGAAGTAA-TAGATCTTATCTCCCTGAAGTTGCAGTGG
* *
26782786 AGCAGATTGAAGTCGATA-AT-TCTATCTCCCTGAAGTTGTAGTGG
1 AGCAGATTGAAGT-AATAGATCT-TATCTCCCTGAAGTTGCAGTGG
* * * * *
26782830 AGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAG
1 AGCAGATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
26782874 AGCAGAT
1 AGCAGAT
26782881 CGCATCAAGT
Statistics
Matches: 361, Mismatches: 90, Indels: 66
0.70 0.17 0.13
Matches are distributed among these distances:
39 4 0.01
40 24 0.07
41 31 0.09
42 6 0.02
43 17 0.05
44 257 0.71
45 11 0.03
46 3 0.01
47 3 0.01
48 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AGCAGATTGAAGTAATAGATCTTATCTCCCTGAAGTTGCAGTGG
Found at i:26784739 original size:15 final size:15
Alignment explanation
Indices: 26784695--26784739 Score: 65
Period size: 14 Copynumber: 3.0 Consensus size: 15
26784685 AAAAAATAGC
26784695 AAAATAGCAATAGAAA
1 AAAATAG-AATAGAAA
26784711 AAAATAG-ATAGAAA
1 AAAATAGAATAGAAA
*
26784725 AAAATAGAATGGAAA
1 AAAATAGAATAGAAA
26784740 TGTATGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 14 0.52
15 6 0.22
16 7 0.26
ACGTcount: A:0.69, C:0.02, G:0.16, T:0.13
Consensus pattern (15 bp):
AAAATAGAATAGAAA
Found at i:26791766 original size:61 final size:61
Alignment explanation
Indices: 26791667--26791828 Score: 182
Period size: 61 Copynumber: 2.7 Consensus size: 61
26791657 AACAGAGGTT
* * * *** ** *
26791667 GCCACAAAGGCTTACCTTTCTAGAGTTCCGCCACAAAGGTTTTCCTTTACATCTAGTACTC
1 GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGTAGTCCTTTACATCTAATACTC
* *
26791728 GTCACAAATGCTTTCCTATCCA-ATGTTTTACCACAAAGGTAGTCCTTTACATCTAATACTC
1 GCCACAAAGGCTTTCCTATCCAGA-GTTTTACCACAAAGGTAGTCCTTTACATCTAATACTC
* * *
26791789 GCCACAAAGGCTTTCCTGTCTAGAGTTTTGCCACAAAGGT
1 GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGT
26791829 GTCTTTTTTC
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
60 1 0.01
61 81 0.98
62 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (61 bp):
GCCACAAAGGCTTTCCTATCCAGAGTTTTACCACAAAGGTAGTCCTTTACATCTAATACTC
Found at i:26792029 original size:53 final size:52
Alignment explanation
Indices: 26791972--26792158 Score: 189
Period size: 53 Copynumber: 3.5 Consensus size: 52
26791962 TATAACTCGC
** * *
26791972 CAGTTACGATCTTACATGATATGGTCTTCTTCCTATATGATGCCATAACCCTT
1 CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCC-A
* * * * *
26792025 CAGTTACGGTCTTATACAATTTGGTGTTCTTCCCATATGATGTCATAACCCA
1 CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
* * *
26792077 CCTGTTA-TAGTTTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
1 -CAGTTACGA-TCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
* *
26792130 CTAGTTATGGTCTTACA-AGATATGGTCTT
1 C-AGTTACGATCTTACACA-ATATGGTCTT
26792159 ATAATGTTAT
Statistics
Matches: 108, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.02
53 106 0.98
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.37
Consensus pattern (52 bp):
CAGTTACGATCTTACACAATATGGTCTTCTTCCCATATGATGCCATAACCCA
Found at i:26797849 original size:13 final size:13
Alignment explanation
Indices: 26797833--26797860 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26797823 TTAACCCTGC
26797833 ATTTTATAATTTA
1 ATTTTATAATTTA
26797846 ATTTTATAATTTA
1 ATTTTATAATTTA
26797859 AT
1 AT
26797861 CTAACTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTTATAATTTA
Found at i:26797943 original size:17 final size:17
Alignment explanation
Indices: 26797921--26797960 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26797911 TTTAGTTAGA
26797921 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
*
26797938 TAAATTATTTTCTCAAT
1 TAAATTAATTTCTCAAT
*
26797955 CAAATT
1 TAAATT
26797961 TTAATTTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:26815637 original size:136 final size:136
Alignment explanation
Indices: 26815393--26815663 Score: 452
Period size: 136 Copynumber: 2.0 Consensus size: 136
26815383 AGCCACATGT
*
26815393 CTACCCCTGTTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
1 CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
*
26815458 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATGGAAGAGCACCACCCAATTGA
66 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
26815523 TGTTGC
131 TGTTGC
* * * *
26815529 CTACCCCTGCTTTACGATACATCTATGCCATATTGGCACACACAGTGACGAGTCGAAAAGAAAGC
1 CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
* * * *
26815594 ACGGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAGGAGCGCCACCCGATTGA
66 ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
26815659 TGTTG
131 TGTTG
26815664 AGTATTTTGT
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 125 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (136 bp):
CTACCCCTGCTTTACGATACATCCATGCCATATTGGCACACACAGTGACGAGACAAAAAGAAAGA
ACAGGGGTCATGAGTACTTTGGACGCATATTTTTTATGAAGTATAGAAGAGCACCACCCAATTGA
TGTTGC
Found at i:26819630 original size:21 final size:21
Alignment explanation
Indices: 26819559--26819631 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
26819549 TGATGGCAAG
26819559 AAAAATAAAGGTTTACATCACC
1 AAAAAT-AAGGTTTACATCACC
* ***
26819581 TAAACAATAACGAAGTTTAAATTGGC
1 -AAA-AATAA-G--GTTTACATCACC
26819607 AAAAATAAGGTTTACATCACC
1 AAAAATAAGGTTTACATCACC
26819628 AAAA
1 AAAA
26819632 CTAGAGGTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
21 12 0.32
23 6 0.16
24 9 0.24
25 3 0.08
26 8 0.21
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.23
Consensus pattern (21 bp):
AAAAATAAGGTTTACATCACC
Found at i:26819834 original size:21 final size:21
Alignment explanation
Indices: 26819804--26819843 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26819794 AATAAACACC
*
26819804 AAAAATTATTTTAAAAATAAA
1 AAAAAGTATTTTAAAAATAAA
26819825 AAAAAGTATTTTAAAAATA
1 AAAAAGTATTTTAAAAATA
26819844 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAAAGTATTTTAAAAATAAA
Found at i:26820326 original size:4 final size:4
Alignment explanation
Indices: 26820317--26820355 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
26820307 CACGAACTAT
26820317 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
26820356 TTGATAACGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:26822500 original size:105 final size:101
Alignment explanation
Indices: 26822385--26822570 Score: 266
Period size: 105 Copynumber: 1.8 Consensus size: 101
26822375 GTCATAACTT
* *
26822385 AGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGATCTTACACATGT-ATCTATACTGC
1 AGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTT--ACATGTAAAC-AT--TGC
26822449 CATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
61 CATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
* * * *
26822490 AGTTATGGTCTTTTCATTAAAATGCCATAGCCCAACTATGGTCTTACATTTAAACATTGCCATGG
1 AGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTTACATGTAAACATTGCCATGG
26822555 TCCAACCATGGTCTTA
66 TCCAACCATGGTCTTA
26822571 TCCGTCAATT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
101 24 0.32
103 7 0.09
104 2 0.03
105 41 0.55
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
AGTTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGATCTTACATGTAAACATTGCCATGG
TCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
Found at i:26822543 original size:33 final size:33
Alignment explanation
Indices: 26822388--26822570 Score: 91
Period size: 33 Copynumber: 5.3 Consensus size: 33
26822378 ATAACTTAGT
* *
26822388 TATGGTCTTATCA-TCAGAATGCCATAGCCCAAC
1 TATGGTCTTA-CATTTAAAATGCCATAGCCCAAC
* * * * *
26822421 TATGATCTTACACATGTATCTATACTGCCATGGTCCAAC
1 TATGGTCTT--ACA--T-T-TAAAATGCCATAGCCCAAC
* * * ** * **
26822460 CATGGTCTTACGTTCAAGGTGCCATAACCCAGT
1 TATGGTCTTACATTTAAAATGCCATAGCCCAAC
*
26822493 TATGGTCTTTTCA-TTAAAATGCCATAGCCCAAC
1 TATGGTC-TTACATTTAAAATGCCATAGCCCAAC
* *
26822526 TATGGTCTTACATTTAAACATTGCCATGGTCCAAC
1 TATGGTCTTACATTTAAA-A-TGCCATAGCCCAAC
*
26822561 CATGGTCTTA
1 TATGGTCTTA
26822571 TCCGTCAATT
Statistics
Matches: 108, Mismatches: 31, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
32 4 0.04
33 50 0.46
34 7 0.06
35 23 0.21
37 2 0.02
38 1 0.01
39 21 0.19
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (33 bp):
TATGGTCTTACATTTAAAATGCCATAGCCCAAC
Found at i:26825466 original size:70 final size:70
Alignment explanation
Indices: 26825376--26825531 Score: 206
Period size: 70 Copynumber: 2.2 Consensus size: 70
26825366 AAATCATTTG
*
26825376 TGTGCCCAACACTAGTCAAACTAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAAC-
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
*
26825440 GATAGT
66 G-TAAT
* * * ** * *
26825446 TGTGCCCAACACTAGTCAAACGAGTCAACAATTTTTTGCACCTAGTGCTAGTCAGATAACTGACA
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
26825511 GTAAT
66 GTAAT
*
26825516 TGTGCCCAGCACTAGT
1 TGTGCCCAACACTAGT
26825532 TAGATAAACT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
70 74 0.99
71 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (70 bp):
TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTGCACCCAGCACTAGTCAAATAACTAACA
GTAAT
Found at i:26827930 original size:25 final size:25
Alignment explanation
Indices: 26827902--26827983 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
26827892 CATGTAAACA
26827902 GGAAGCTC-TTCCGAGCCATATAACG
1 GGAAGCTCATT-CGAGCCATATAACG
* *
26827927 GGAAGTTCATTTGAGCCATATAACG
1 GGAAGCTCATTCGAGCCATATAACG
* * * *
26827952 GGAAGCTAATGCGAGCCA-ATATCA
1 GGAAGCTCATTCGAGCCATATAACG
26827976 GGAAGCTC
1 GGAAGCTC
26827984 CGGAGAGCCA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
24 11 0.23
25 34 0.72
26 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATTCGAGCCATATAACG
Found at i:26828031 original size:25 final size:25
Alignment explanation
Indices: 26827953--26828166 Score: 134
Period size: 25 Copynumber: 8.6 Consensus size: 25
26827943 CATATAACGG
* *
26827953 GAAGCTAATGCGAGCCAA-TATC-A
1 GAAGCTCATGAGAGCCAATTATCGA
** *
26827976 GGAAGCTCCGGAGAGCC-ATTAAT-TA
1 -GAAGCTCATGAGAGCCAATT-ATCGA
26828001 GTAAGCTCATGAGAGCCAATTATCGA
1 G-AAGCTCATGAGAGCCAATTATCGA
* * * *
26828027 GAAGCTCGTGAGAGCCAAATAACGG
1 GAAGCTCATGAGAGCCAATTATCGA
*
26828052 GAAGCTCAAGAGAGCC-ATATATCGA
1 GAAGCTCATGAGAGCCAAT-TATCGA
* * * * * *
26828077 TATGCTCATAAGAGCTAAATAACGA
1 GAAGCTCATGAGAGCCAATTATCGA
* * * *
26828102 GAAGCTCGTGAGAGCCTAGTATCGG
1 GAAGCTCATGAGAGCCAATTATCGA
*
26828127 GAAGCTCATGAGAGTCAATTATC-A
1 GAAGCTCATGAGAGCCAATTATCGA
* *
26828151 GGATGCTCATAAGAGC
1 -GAAGCTCATGAGAGC
26828167 TAAAAATGGG
Statistics
Matches: 141, Mismatches: 40, Indels: 17
0.71 0.20 0.09
Matches are distributed among these distances:
23 1 0.01
24 15 0.11
25 119 0.84
26 6 0.04
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.20
Consensus pattern (25 bp):
GAAGCTCATGAGAGCCAATTATCGA
Found at i:26828057 original size:50 final size:50
Alignment explanation
Indices: 26827939--26828140 Score: 171
Period size: 50 Copynumber: 4.1 Consensus size: 50
26827929 AAGTTCATTT
* * * **
26827939 GAGCCATATAACGGGAAGCTAATGCGAGCCAA-TATC-AGGAAGCTCCGGA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCCAATTATCGA-GAAGCTCATGA
* * *
26827988 GAGCCATTAATTA--GTAAGCTCATGAGAGCCAATTATCGAGAAGCTCGTGA
1 GAGCCA--AATAACGGGAAGCTCATGAGAGCCAATTATCGAGAAGCTCATGA
* * * *
26828038 GAGCCAAATAACGGGAAGCTCAAGAGAGCC-ATATATCGATATGCTCATAA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCCAAT-TATCGAGAAGCTCATGA
* * * * * *
26828088 GAGCTAAATAACGAGAAGCTCGTGAGAGCCTAGTATCGGGAAGCTCATGA
1 GAGCCAAATAACGGGAAGCTCATGAGAGCCAATTATCGAGAAGCTCATGA
26828138 GAG
1 GAG
26828141 TCAATTATCA
Statistics
Matches: 122, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
48 4 0.03
49 24 0.20
50 89 0.73
51 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (50 bp):
GAGCCAAATAACGGGAAGCTCATGAGAGCCAATTATCGAGAAGCTCATGA
Found at i:26828157 original size:75 final size:75
Alignment explanation
Indices: 26828005--26828170 Score: 210
Period size: 75 Copynumber: 2.2 Consensus size: 75
26827995 TAATTAGTAA
* * * * *
26828005 GCTCATGAGAGCCAATTATCGAGAAGCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCCAT
1 GCTCATAAGAGCTAAATAACGAGAAGCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCAAT
*
26828070 ATATCGATAT
66 ATATCGAGAT
* * * *
26828080 GCTCATAAGAGCTAAATAACGAGAAGCTCGTGAGAGCCTAGTATCGGGAAGCTCATGAGAGTCAA
1 GCTCATAAGAGCTAAATAACGAGAAGCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAG-CAA
26828145 T-TATC-AGGAT
65 TATATCGA-GAT
26828155 GCTCATAAGAGCTAAA
1 GCTCATAAGAGCTAAA
26828171 AATGGGACAC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
74 1 0.01
75 75 0.95
76 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (75 bp):
GCTCATAAGAGCTAAATAACGAGAAGCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCAAT
ATATCGAGAT
Found at i:26831346 original size:128 final size:127
Alignment explanation
Indices: 26830956--26831418 Score: 437
Period size: 131 Copynumber: 3.6 Consensus size: 127
26830946 AATCAACGAC
* * * * * * *
26830956 ATTTTAAAGTTGTTGTTAATATTTTAATGTTTAACAATAACTCATTTTGTCATTTACAAA-CTTA
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAAC-A-ACCT-ATTTTTTC-GTTACAAATTTTA
* * * *
26831020 TTAAGAATTTACAATGACAAATCGTGTTATTGCAACTAATAAGTAGAAAATTAAAATAGCTAACG
62 TTAAGAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTA-CTAACA
*
26831085 AC
126 AT
*** *
26831087 ATTTTAAGGTTGTTGCTAATATTTTTAACGTTTAACAATAAATTATTTATTGTTACAAATTTTAT
1 ATTTTAAGGTTGTTGCTAATA-TTTTAACGTTTAACAACCTATT-TTT-TCGTTACAAATTTTAT
* * * * * *
26831152 T-AGTAATTCACAACT-ACAAATCATTTCATTGCTATTAATAAGCAGAAAATTAAATTACTTATC
63 TAAG-AATTTACAA-TGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTAC-TAAC
26831215 AAT
125 AAT
* * * * *
26831218 ATTTTAAGGTTGTTGCTAAGATTTTAATGTTTAACAACCTGTTTTTTCGTTACAACTTTTTTTAA
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAACCTATTTTTTCGTTACAAATTTTATTAA
* * * * *
26831283 GAATTTGCAATGACAAATTGTGTCATTGCAACGAATAAGCATAAAATTAAATTTCATAACAAT
66 GAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTAC-TAACAAT
* * * * * *
26831346 ATTTTAAGGTTTTTTCTAATATTTTAACATTTACAACAACCTATTTTGTCTTTATAAATTTTATT
1 ATTTTAAGGTTGTTGCTAATATTTTAACGTTT--AACAACCTATTTTTTCGTTACAAATTTTATT
26831411 AAGAATTT
64 AAGAATTT
26831419 TAGTCGTATC
Statistics
Matches: 268, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
127 1 0.00
128 89 0.33
129 8 0.03
130 63 0.24
131 93 0.35
132 14 0.05
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (127 bp):
ATTTTAAGGTTGTTGCTAATATTTTAACGTTTAACAACCTATTTTTTCGTTACAAATTTTATTAA
GAATTTACAATGACAAATCGTGTCATTGCAACTAATAAGCAGAAAATTAAATTACTAACAAT
Found at i:26832636 original size:25 final size:24
Alignment explanation
Indices: 26832608--26832727 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 24
26832598 AACACACATC
*
26832608 CTCTGCTTAGTTCTGTTCTGTTATG
1 CTCTGCTT-GTTCTGTTCTGTTCTG
* *
26832633 CTCTGCTTTGTTTTGTTATGTTCTG
1 CTCTGC-TTGTTCTGTTCTGTTCTG
* * *
26832658 CTTTGCTCTGTTCTATTCTGTTCTA
1 CTCTGCT-TGTTCTGTTCTGTTCTG
* *
26832683 CTTTGCTTTGTTTTGTGT-TGTTCTG
1 CTCTGC-TTGTTCTGT-TCTGTTCTG
*
26832708 CTCTGCTCTGTCCTGTTCTG
1 CTCTGCT-TGTTCTGTTCTG
26832728 GTTGGGTTGT
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
24 3 0.04
25 68 0.91
26 4 0.05
ACGTcount: A:0.04, C:0.21, G:0.19, T:0.56
Consensus pattern (24 bp):
CTCTGCTTGTTCTGTTCTGTTCTG
Found at i:26832644 original size:20 final size:20
Alignment explanation
Indices: 26832621--26832669 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
26832611 TGCTTAGTTC
26832621 TGTTCTGTTATGCTCTGCTT
1 TGTTCTGTTATGCTCTGCTT
* *
26832641 TGTTTTGTTATGTTCTGCTT
1 TGTTCTGTTATGCTCTGCTT
*
26832661 TGCTCTGTT
1 TGTTCTGTT
26832670 CTATTCTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.04, C:0.16, G:0.20, T:0.59
Consensus pattern (20 bp):
TGTTCTGTTATGCTCTGCTT
Found at i:26832676 original size:20 final size:20
Alignment explanation
Indices: 26832624--26832677 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
26832614 TTAGTTCTGT
** *
26832624 TCTGTTATGCTCTGCTTTGT
1 TCTGTTATATTCTGCTTTGC
* *
26832644 TTTGTTATGTTCTGCTTTGC
1 TCTGTTATATTCTGCTTTGC
*
26832664 TCTGTTCTATTCTG
1 TCTGTTATATTCTG
26832678 TTCTACTTTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.57
Consensus pattern (20 bp):
TCTGTTATATTCTGCTTTGC
Found at i:26832692 original size:50 final size:50
Alignment explanation
Indices: 26832608--26832727 Score: 154
Period size: 50 Copynumber: 2.4 Consensus size: 50
26832598 AACACACATC
*
26832608 CTCTGCT-TAGTTCTGTTCTGTTATGCTCTGCTTTGTTTTGT-TATGTTCTG
1 CTCTGCTCT-GTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGT-TGTTCTG
* * * *
26832658 CTTTGCTCTGTTCTATTCTGTTCTACTTTGCTTTGTTTTGTGTTGTTCTG
1 CTCTGCTCTGTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTG
*
26832708 CTCTGCTCTGTCCTGTTCTG
1 CTCTGCTCTGTTCTGTTCTG
26832728 GTTGGGTTGT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 58 0.97
51 2 0.03
ACGTcount: A:0.04, C:0.21, G:0.19, T:0.56
Consensus pattern (50 bp):
CTCTGCTCTGTTCTGTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTG
Found at i:26834626 original size:130 final size:128
Alignment explanation
Indices: 26834264--26834645 Score: 425
Period size: 124 Copynumber: 3.0 Consensus size: 128
26834254 ATATCAAATC
* *
26834264 AACGACATTTTAAGGTTGTTGCTAATATTTTAATGTTTAACAATAACTTATTTTAT-TGTTACAA
1 AACGAAATTTTAAGGTTGTTGCTAATATTTTAATGTTT-ACAACAACTTATTTT-TCT-TTACAA
* ** * * * *
26834328 ATTTTATTAATAATTCACAACTACAAATCGTGTCATTACTATTAATAAGCAGAAAATTAAATTAC
63 ATTTTATTAAGAATTTGCAA-TACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTAC
*
26834393 GT
127 AT
**** * * *
26834395 CTTAAAATTTTAAGGTTGTTGTTAATATTTTAATGTTT--AAC-A--TGTTTTTCCTTACAAATT
1 AACGAAATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTTTCTTTACAAATT
* *
26834455 TTATTGAGAATTTGCAATAACAAATTGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
66 TTATTAAGAATTTGCAAT-ACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
* **
26834519 AACGATATTTTAAGGTTGTTGCTAATATTTTAACATTTACAACAACTTATTTTGTCTTTACAAAT
1 AACGAAATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTT-TCTTTACAAAT
* * **
26834584 TTTATTAAGAATTTGCAATGACAAATCATATTGTTGCAATGAATAAGCATAAAATTAAATTA
65 TTTATTAAGAATTTGCAAT-ACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTA
26834646 TGTATTGTTG
Statistics
Matches: 207, Mismatches: 36, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
123 1 0.00
124 92 0.44
125 5 0.02
126 3 0.01
127 2 0.01
128 2 0.01
129 5 0.02
130 65 0.31
131 32 0.15
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (128 bp):
AACGAAATTTTAAGGTTGTTGCTAATATTTTAATGTTTACAACAACTTATTTTTCTTTACAAATT
TTATTAAGAATTTGCAATACAAATCGTGTCATTGCAATGAATAAGCATAAAATTAAATTACAT
Found at i:26834666 original size:116 final size:117
Alignment explanation
Indices: 26834534--26834766 Score: 326
Period size: 117 Copynumber: 2.0 Consensus size: 117
26834524 TATTTTAAGG
* *
26834534 TTGTTGCTAATATTTTAACATTT-ACAACAACTTATTTTG-TCTTTACAAATTTTATTAAGAATT
1 TTGTTGCTAATATTTTAACATTTAACAACAACTT-GTTTGATCGTTACAAATTTTATTAAGAATT
* *
26834597 TGCAATGACAAATCATATTGTTGCAATGAATAAGCATAAAATTAAATTATGTA
65 TGCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
* **
26834650 TTGTTGCTAATATTTTAACATTTAACAACAGCTTGTTTGATCGTTACGCATTTTATTAAGAATTT
1 TTGTTGCTAATATTTTAACATTTAACAACAACTTGTTTGATCGTTACAAATTTTATTAAGAATTT
* * * * * *
26834715 GTAATTAAAAATCGTGTTGTTGCAATGAATAAGTATACAAGTAAATTATGTA
66 GCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
26834767 ACGACATTTT
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
116 27 0.26
117 75 0.74
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (117 bp):
TTGTTGCTAATATTTTAACATTTAACAACAACTTGTTTGATCGTTACAAATTTTATTAAGAATTT
GCAATGAAAAATCATATTGTTGCAATGAATAAGCATAAAAGTAAATTATGTA
Found at i:26838960 original size:9 final size:9
Alignment explanation
Indices: 26838946--26838973 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26838936 TTTTGTTACA
26838946 ACAATTAAT
1 ACAATTAAT
26838955 ACAATTAAT
1 ACAATTAAT
26838964 ACAATTAAT
1 ACAATTAAT
26838973 A
1 A
26838974 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:26838995 original size:68 final size:66
Alignment explanation
Indices: 26838916--26839057 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 66
26838906 TCAAGTTTGT
*
26838916 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
26838981 AAA
64 AAA
26838984 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
*
26839049 T
66 A
26839050 TTTACTAA
1 TTTACTAA
26839058 CAATTAATTT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 44 0.61
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
A
Found at i:26839067 original size:16 final size:16
Alignment explanation
Indices: 26839046--26839087 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
26839036 AATAATTTGA
*
26839046 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
26839062 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
26839078 TAGTTTTAAT
1 TAATTTTAAT
26839088 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:26839071 original size:22 final size:23
Alignment explanation
Indices: 26839061--26839116 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
26839051 TTACTAACAA
* * *
26839061 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
26839083 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
26839106 TTAATTTTAAT
1 TTAATTTTAAT
26839117 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:26839076 original size:59 final size:66
Alignment explanation
Indices: 26838916--26839079 Score: 216
Period size: 68 Copynumber: 2.5 Consensus size: 66
26838906 TCAAGTTTGT
*
26838916 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATACAATTAATACAATTAATAATTTGAT
26838981 AAA
64 AAA
26838984 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
26839047 AAT
64 AAA
*
26839050 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTA
26839080 GTTTTAATTT
Statistics
Matches: 92, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
59 9 0.10
61 6 0.07
62 3 0.03
64 2 0.02
65 1 0.01
66 27 0.29
67 1 0.01
68 43 0.47
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:26841189 original size:21 final size:23
Alignment explanation
Indices: 26841158--26841218 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 23
26841148 ACGAGTCCCG
26841158 TTATA-TA-TTATCAAAATAATA
1 TTATATTATTTATCAAAATAATA
* * *
26841179 -TA-CTTATTTATTAAAAAAATA
1 TTATATTATTTATCAAAATAATA
*
26841200 TTATATTTTTTATCAAAAT
1 TTATATTATTTATCAAAAT
26841219 TTATTTATAA
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
20 4 0.14
21 12 0.41
22 2 0.07
23 11 0.38
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
TTATATTATTTATCAAAATAATA
Found at i:26841211 original size:23 final size:24
Alignment explanation
Indices: 26841170--26841217 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
26841160 ATATATTATC
*
26841170 AAAATAATATACTTATTTATTAAA
1 AAAATAATATACTTATTTATCAAA
* *
26841194 AAAATATTATA-TTTTTTATCAAA
1 AAAATAATATACTTATTTATCAAA
26841217 A
1 A
26841218 TTTATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
AAAATAATATACTTATTTATCAAA
Found at i:26853573 original size:20 final size:20
Alignment explanation
Indices: 26853548--26853594 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26853538 CGTACCTAAG
26853548 CCGTGTGAAAGGT-TACACAC
1 CCGTGTG-AAGGTCTACACAC
**
26853568 CCGTGTGGTGGTCTACACAC
1 CCGTGTGAAGGTCTACACAC
26853588 CCGTGTG
1 CCGTGTG
26853595 CAAGCTGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (20 bp):
CCGTGTGAAGGTCTACACAC
Found at i:26857217 original size:23 final size:24
Alignment explanation
Indices: 26857175--26857235 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
26857165 CGTTCTTTAT
26857175 TAAATTAGTTATCTATAGCAA-CA
1 TAAATTAGTTATCTATAGCAAGCA
26857198 TAAATTA-TT-TCATATAAGCAAGCA
1 TAAATTAGTTATC-TAT-AGCAAGCA
*
26857222 T--ATTAATTATCTAT
1 TAAATTAGTTATCTAT
26857236 CATTTATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
21 2 0.06
22 9 0.27
23 17 0.52
24 5 0.15
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (24 bp):
TAAATTAGTTATCTATAGCAAGCA
Found at i:26862656 original size:18 final size:18
Alignment explanation
Indices: 26862635--26862670 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26862625 AACTGGGCTG
*
26862635 AAAATCACAAAATCAAAA
1 AAAATCAAAAAATCAAAA
26862653 AAAATCAAAAAATCAAAA
1 AAAATCAAAAAATCAAAA
26862671 GCATGCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.75, C:0.14, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAATCAAAAAATCAAAA
Found at i:26873311 original size:29 final size:28
Alignment explanation
Indices: 26873279--26873373 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 28
26873269 CAACTCACTT
26873279 TTTTATTTAATAAACAAGCCCTCAACCTA
1 TTTT-TTTAATAAACAAGCCCTCAACCTA
* * * * * *
26873308 TTTTTGTAGTTAAATAAGCTCTTAATCTA
1 TTTTTTTA-ATAAACAAGCCCTCAACCTA
*
26873337 TGATTTTTACTCATAAACAAGCCCTCAACCTA
1 T--TTTTT--TAATAAACAAGCCCTCAACCTA
26873369 TTTTT
1 TTTTT
26873374 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 13, Indels: 9
0.69 0.19 0.13
Matches are distributed among these distances:
28 3 0.06
29 20 0.42
30 4 0.08
31 4 0.08
32 16 0.33
33 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (28 bp):
TTTTTTTAATAAACAAGCCCTCAACCTA
Found at i:26874585 original size:16 final size:16
Alignment explanation
Indices: 26874542--26874586 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
26874532 ACTTTAGGTA
26874542 AAATATATTTACTTTAAT
1 AAAT-TATTTA-TTTAAT
* *
26874560 AAGTTTTTTATTTAAT
1 AAATTATTTATTTAAT
26874576 AAATTATTTAT
1 AAATTATTTAT
26874587 GAGTAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 15 0.65
17 5 0.22
18 3 0.13
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
AAATTATTTATTTAAT
Found at i:26877884 original size:16 final size:17
Alignment explanation
Indices: 26877863--26877900 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26877853 GGTAGATTTA
26877863 TTAAAA-TTAAAAAAAC
1 TTAAAATTTAAAAAAAC
* *
26877879 TTAAAATTTTAAAAGAC
1 TTAAAATTTAAAAAAAC
26877896 TTAAA
1 TTAAA
26877901 TGAAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (17 bp):
TTAAAATTTAAAAAAAC
Found at i:26880807 original size:13 final size:13
Alignment explanation
Indices: 26880789--26880816 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26880779 ATTTAAAGTG
26880789 AATATGGCTTTTT
1 AATATGGCTTTTT
26880802 AATATGGCTTTTT
1 AATATGGCTTTTT
26880815 AA
1 AA
26880817 GAATTATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
AATATGGCTTTTT
Found at i:26881991 original size:20 final size:20
Alignment explanation
Indices: 26881955--26881993 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26881945 ATGAATATTG
*
26881955 TGTGGTGTGAATGGTGGTCT
1 TGTGGTGTGAATAGTGGTCT
*
26881975 TGTGGTGTGATTAGTGGTC
1 TGTGGTGTGAATAGTGGTC
26881994 GGTAAGGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.05, G:0.44, T:0.41
Consensus pattern (20 bp):
TGTGGTGTGAATAGTGGTCT
Found at i:26889983 original size:30 final size:31
Alignment explanation
Indices: 26889928--26889995 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
26889918 ACCCTTAAAA
* * * **
26889928 TATTTACACTATTTATCCTTCAAATTTTTTG
1 TATTTACACTATTAACCCCTCAAATTTTGAG
26889959 TATTTACACT-TTAACCCCTCAAATTTTGAG
1 TATTTACACTATTAACCCCTCAAATTTTGAG
26889989 TATTTAC
1 TATTTAC
26889996 TATTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAACCCCTCAAATTTTGAG
Found at i:26890175 original size:23 final size:23
Alignment explanation
Indices: 26890144--26890194 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
26890134 ACCTACTTTC
* **
26890144 TTACTGTAGTAATTTTTTGGATA
1 TTACAGTAGTAATTTTCGGGATA
26890167 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26890190 TTACA
1 TTACA
26890195 ATAATATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26910934 original size:18 final size:18
Alignment explanation
Indices: 26910911--26910949 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26910901 TCTGAGGAGC
26910911 AAGGAAACGAAGAAGAGG
1 AAGGAAACGAAGAAGAGG
** *
26910929 AAGGAAGTGATGAAGAGG
1 AAGGAAACGAAGAAGAGG
26910947 AAG
1 AAG
26910950 TTGAGGAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.41, T:0.05
Consensus pattern (18 bp):
AAGGAAACGAAGAAGAGG
Found at i:26924176 original size:50 final size:50
Alignment explanation
Indices: 26924052--26924297 Score: 232
Period size: 50 Copynumber: 4.8 Consensus size: 50
26924042 GATAATAACA
* ** * *
26924052 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATAT-CGG
* * **
26924101 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26924151 TGCCCATGCCATGTCCCAGACATGGTCTTAC-TGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCATATCGG
* * *
26924201 TGCCAACGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
26924257 TG-CAATGCCATGTTCCAGACATGGCCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26924298 TTACCCAAAT
Statistics
Matches: 166, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
48 6 0.04
49 37 0.22
50 82 0.49
51 1 0.01
53 2 0.01
55 35 0.21
56 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26937871 original size:20 final size:20
Alignment explanation
Indices: 26937848--26937911 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
26937838 TTGAAATTTT
26937848 TTTAAATATTGGAAAATATG
1 TTTAAATATTGGAAAATATG
*
26937868 TTTAAATCTTGG-AAAT-T-
1 TTTAAATATTGGAAAATATG
26937885 TTTAAATATTGGAAAATATG
1 TTTAAATATTGGAAAATATG
26937905 TTTAAAT
1 TTTAAAT
26937912 CTTTGATAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 11 0.28
18 5 0.13
19 5 0.13
20 18 0.46
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTAAATATTGGAAAATATG
Found at i:26938022 original size:20 final size:20
Alignment explanation
Indices: 26937999--26938036 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26937989 ATTAAATGAT
26937999 TATTTTATA-ACTTATATTAA
1 TATTTTATATA-TTATATTAA
26938019 TATTTTATATATTATATT
1 TATTTTATATATTATATT
26938037 TTTTTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTATATATTATATTAA
Found at i:26944315 original size:18 final size:17
Alignment explanation
Indices: 26944292--26944339 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
26944282 TAGAAAAATT
26944292 AATATTTTCTTATGGTAA
1 AATATTTTCTTAT-GTAA
*
26944310 AATATTTTTTCTTATTTAA
1 AATA--TTTTCTTATGTAA
*
26944329 AAAATTTTCTT
1 AATATTTTCTT
26944340 TAAATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.27
18 4 0.15
19 6 0.23
20 9 0.35
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (17 bp):
AATATTTTCTTATGTAA
Found at i:26944329 original size:19 final size:20
Alignment explanation
Indices: 26944296--26944336 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
26944286 AAAATTAATA
*
26944296 TTTTCTTATGGTAAAATATT
1 TTTTCTTATGGTAAAAAATT
*
26944316 TTTTCTTAT-TTAAAAAATT
1 TTTTCTTATGGTAAAAAATT
26944335 TT
1 TT
26944337 CTTTAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTCTTATGGTAAAAAATT
Found at i:26950407 original size:71 final size:70
Alignment explanation
Indices: 26950291--26950432 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 70
26950281 TTTTGAGCCG
26950291 GGTGATATTAATATCAGTCTTTTTCGACAAAAAAAATATTGTAAAAAGGGTTATAAGTAAAAATA
1 GGTGATATTAATATCAGTCTTTTTCGACAAAAAAAATATTGT-AAAAGGGTTATAAGTAAAAATA
26950356 AATATT
65 AATATT
26950362 GGTGATATTAATATCAGTCTTTTTCGACAAAAAAAATATTGTAAAAGGGTTATAAGTAAAAATAA
1 GGTGATATTAATATCAGTCTTTTTCGACAAAAAAAATATTGTAAAAGGGTTATAAGTAAAAATAA
26950427 ATATT
66 ATATT
26950432 G
1 G
26950433 TATAAATATA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 29 0.41
71 42 0.59
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.34
Consensus pattern (70 bp):
GGTGATATTAATATCAGTCTTTTTCGACAAAAAAAATATTGTAAAAGGGTTATAAGTAAAAATAA
ATATT
Found at i:26950613 original size:23 final size:24
Alignment explanation
Indices: 26950570--26950616 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26950560 TTATTAAAAC
26950570 TAATTATTGTTTAAAAAAATTAAG
1 TAATTATTGTTTAAAAAAATTAAG
26950594 TAATTATTGTTT-AAAAAATTAAG
1 TAATTATTGTTTAAAAAAATTAAG
26950617 GTTTAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (24 bp):
TAATTATTGTTTAAAAAAATTAAG
Found at i:26950963 original size:20 final size:19
Alignment explanation
Indices: 26950931--26950973 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26950921 AAATTAGAAA
* **
26950931 AAAAATTGTAAAATTTTAT
1 AAAAATCGTAAAAAATTAT
26950950 AAAAATCGTAAAAAAATTAT
1 AAAAATCGT-AAAAAATTAT
26950970 AAAA
1 AAAA
26950974 TATATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (19 bp):
AAAAATCGTAAAAAATTAT
Found at i:26950979 original size:29 final size:29
Alignment explanation
Indices: 26950912--26951026 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 29
26950902 AAAAAAGTTC
* * *
26950912 AAATAT-TAAAAATTAGAAAAAAAATTGTA
1 AAATATATAAAAA-TCGTAAAAAAATTATA
*
26950941 AAATTTTATAAAAATCGTAAAAAAATTATA
1 AAA-TATATAAAAATCGTAAAAAAATTATA
* * *
26950971 AAATATATAGAAAT-AT-AAAAAATTTTA
1 AAATATATAAAAATCGTAAAAAAATTATA
* * *
26950998 AAAT-TTTATGAAATCGTAAGAAAATTATA
1 AAATATATA-AAAATCGTAAAAAAATTATA
26951027 CAAAATGTTA
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.04
27 19 0.28
28 2 0.03
29 21 0.30
30 18 0.26
31 6 0.09
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (29 bp):
AAATATATAAAAATCGTAAAAAAATTATA
Found at i:26951302 original size:18 final size:18
Alignment explanation
Indices: 26951276--26951334 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
26951266 AATTCTAATG
*
26951276 TTTAATAAATTTTATATT
1 TTTATTAAATTTTATATT
*
26951294 TTTATTAAACTTTAATAATT
1 TTTATTAAA-TTTTAT-ATT
* *
26951314 TTT-CTAAAATTTAT-TT
1 TTTATTAAATTTTATATT
26951330 TTTAT
1 TTTAT
26951335 ATTTTTTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
16 5 0.16
18 12 0.38
19 9 0.28
20 6 0.19
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATTAAATTTTATATT
Found at i:26951460 original size:88 final size:88
Alignment explanation
Indices: 26951361--26951558 Score: 254
Period size: 89 Copynumber: 2.2 Consensus size: 88
26951351 TAATAAGAGC
* * * *
26951361 AAGGGCTTAATTGTTTTTTTGAAAAAATTTGAGTGTCTTTTTGATGCATTTTAAAAATTCAAGTA
1 AAGGGCTTAATTGTTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTA
26951426 CCCAATTGAGT-GAAAAAAAAAGA
66 CCCAATTGAGTCGAAAAAAAAA-A
* * * * *
26951449 AGGGGCTTAATTGCTTTTCTTGAAGAAGTTTAAGGGTCTTTTTAATACATTTTAAAAGTTCAAGT
1 AAGGGCTTAATTG-TTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGT
* *
26951514 GCTCAATTGAGTGCGAAAAAAAAAA
65 ACCCAATTGAGT-CGAAAAAAAAAA
*
26951539 AAGAGCTTAATTGTTTTTTT
1 AAGGGCTTAATTGTTTTTTT
26951559 TTTAAGCCAA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
88 12 0.13
89 59 0.63
90 12 0.13
91 10 0.11
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (88 bp):
AAGGGCTTAATTGTTTTTTTGAAAAAATTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTA
CCCAATTGAGTCGAAAAAAAAAA
Found at i:26952856 original size:45 final size:46
Alignment explanation
Indices: 26952806--26952922 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 46
26952796 GTTGTAATAA
*
26952806 ACATTTTGCTGCTATTTTTGTTGAGT-AAATGTCGCATATGTGTGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
* * *
26952851 ACATTTTGTTGTTGTTTTTGTTGAGTAAAATGCCGCATATGTGTGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
* * *
26952897 ACA-TCTGCTGCTGCTTTTTGATGAGT
1 ACATTTTGCTGCT-ATTTTTGTTGAGT
26952923 TTAATGATGC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 29 0.48
46 32 0.52
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.44
Consensus pattern (46 bp):
ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGTGC
Found at i:26952935 original size:46 final size:46
Alignment explanation
Indices: 26952806--26952936 Score: 131
Period size: 46 Copynumber: 2.9 Consensus size: 46
26952796 GTTGTAATAA
* * * *
26952806 ACATTTTGCTGCTATTTTTGTTGAGT-AAATGTCGCATATGTGTGC
1 ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
* * * * *
26952851 ACATTTTGTTGTTGTTTTTGTTGAGTAAAATGCCGCATATGTGTGC
1 ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
** *
26952897 ACA-TCTGCTGCTGCTTTTTGATGAGTTTAATGATGCATAT
1 ACATTCTGCTGCTG-TTTTTGATGAGTAAAATGACGCATAT
26952937 ATGAGCCTAG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
45 30 0.42
46 42 0.58
ACGTcount: A:0.21, C:0.13, G:0.22, T:0.44
Consensus pattern (46 bp):
ACATTCTGCTGCTGTTTTTGATGAGTAAAATGACGCATATGTGTGC
Found at i:26954250 original size:5 final size:5
Alignment explanation
Indices: 26954240--26954265 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26954230 TTAAAACTTC
26954240 TGGGT TGGGT TGGGT TGGGT TGGGT T
1 TGGGT TGGGT TGGGT TGGGT TGGGT T
26954266 TTGGGGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TGGGT
Found at i:26971851 original size:17 final size:18
Alignment explanation
Indices: 26971822--26971869 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
26971812 TGATAATGTA
26971822 CAAAAGAAT-GTATAAA-T
1 CAAAA-AATAGTATAAATT
26971839 CAAAAAATAGTATAAATT
1 CAAAAAATAGTATAAATT
*
26971857 AAAAAAATAGTAT
1 CAAAAAATAGTAT
26971870 TTTATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 3 0.11
17 12 0.43
18 13 0.46
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.25
Consensus pattern (18 bp):
CAAAAAATAGTATAAATT
Found at i:26972042 original size:24 final size:23
Alignment explanation
Indices: 26972011--26972213 Score: 137
Period size: 24 Copynumber: 8.6 Consensus size: 23
26972001 TAATAGATGG
*
26972011 AATTAAAATAATAATATATGATA
1 AATTAAAATAATAATACATGATA
*
26972034 AATTAAAA-AAGCAATTGCACATGA-A
1 AATTAAAATAA-TAA-T--ACATGATA
*
26972059 AACTTAGAATAATAATACAT-ATAA
1 AA-TTAAAATAATAATACATGAT-A
*
26972083 AACTTAAAATAATAATACATGATG
1 AA-TTAAAATAATAATACATGATA
* *
26972107 AATTTAAATAACAAATACATGATA
1 AATTAAAATAA-TAATACATGATA
* * **
26972131 AATTTAAGTAATGGTA-ATGATA
1 AATTAAAATAATAATACATGATA
* * *
26972153 AATTTAAAATAATAATATATTACA
1 AA-TTAAAATAATAATACATGATA
**
26972177 AATTAAAATAAT-ATTGATGATA
1 AATTAAAATAATAATACATGATA
26972199 AATTTAAGAATAATA
1 AA-TTAA-AATAATA
26972214 TTAAGCTTAA
Statistics
Matches: 142, Mismatches: 23, Indels: 28
0.74 0.12 0.15
Matches are distributed among these distances:
22 19 0.13
23 48 0.34
24 55 0.39
25 6 0.04
26 12 0.08
27 2 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
AATTAAAATAATAATACATGATA
Found at i:26974582 original size:20 final size:22
Alignment explanation
Indices: 26974546--26974585 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
26974536 ATTCAATACA
26974546 TACATACAAAGAAATAAAAAAT
1 TACATACAAAGAAATAAAAAAT
26974568 TACATA-AAA-AAATAAAAA
1 TACATACAAAGAAATAAAAA
26974586 TATACTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (22 bp):
TACATACAAAGAAATAAAAAAT
Found at i:26979530 original size:39 final size:39
Alignment explanation
Indices: 26979487--26979567 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
26979477 AAATTGTGAC
26979487 AAGCAAATATTAGCTCATTGATTGTCTAAGTTCAAACTG
1 AAGCAAATATTAGCTCATTGATTGTCTAAGTTCAAACTG
26979526 AAGCAAATATTAGCTCATTGATTGTCTAAGTTCAAACTG
1 AAGCAAATATTAGCTCATTGATTGTCTAAGTTCAAACTG
26979565 AAG
1 AAG
26979568 ATAAGTGGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (39 bp):
AAGCAAATATTAGCTCATTGATTGTCTAAGTTCAAACTG
Found at i:26981105 original size:37 final size:36
Alignment explanation
Indices: 26981054--26981170 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 36
26981044 ATTTCAAAAA
* *
26981054 TAATAATATTTTAATAGTTTAATATTAAATTTAATT
1 TAATAGTATCTTAATAGTTTAATATTAAATTTAATT
*
26981090 TAATACGTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-GTATCTTAATAGT-TTAATATTAAATTTAAT-T
26981127 TAA-AGTGA--TT-ATA--TTAATATTAAATTTAATT
1 TAATAGT-ATCTTAATAGTTTAATATTAAATTTAATT
*
26981158 TAATGTGTATCTT
1 TAAT-AGTATCTT
26981171 GTAGATAAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
30 2 0.03
31 8 0.12
32 9 0.14
33 5 0.08
34 4 0.06
35 2 0.03
36 15 0.23
37 19 0.29
38 2 0.03
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (36 bp):
TAATAGTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:26982726 original size:10 final size:12
Alignment explanation
Indices: 26982689--26982722 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26982679 TTTATCAAAA
* *
26982689 TAAATATTAAAT
1 TAAATCTTATAT
26982701 TAAATCTTATAT
1 TAAATCTTATAT
26982713 TAAATCTTAT
1 TAAATCTTAT
26982723 TAAAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAATCTTATAT
Found at i:27005535 original size:37 final size:37
Alignment explanation
Indices: 27005485--27005563 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
27005475 TTATTACGAA
* *
27005485 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
27005522 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
27005559 GTCTT
1 GTCTT
27005564 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:27005760 original size:47 final size:47
Alignment explanation
Indices: 27005682--27005935 Score: 391
Period size: 47 Copynumber: 5.4 Consensus size: 47
27005672 CCCTTCGGGA
* * * * * * *
27005682 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27005729 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27005776 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27005823 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27005870 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27005917 CTTATCACATATATACACT
1 CTTATCACATATATACACT
27005936 GTCTTGGCTG
Statistics
Matches: 191, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 191 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27016885 original size:14 final size:15
Alignment explanation
Indices: 27016846--27016887 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
27016836 TTTTAACATA
*
27016846 ATTATTATTAAATAT
1 ATTATAATTAAATAT
27016861 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
27016875 A-TATAATTTAATA
1 ATTATAATTAAATA
27016888 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:27017169 original size:29 final size:27
Alignment explanation
Indices: 27017134--27017193 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
27017124 CAAAAGTCGA
*
27017134 TATATATGTAATATTTTTAAAATAATATTTT
1 TATAT-TGTAAT-TATTT-AAA-AATATTTT
*
27017165 TATATTTTAATTATTTAAAAATATTTT
1 TATATTGTAATTATTTAAAAATATTTT
27017192 TA
1 TA
27017194 ATTAATGCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 10 0.37
28 3 0.11
29 4 0.15
30 5 0.19
31 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (27 bp):
TATATTGTAATTATTTAAAAATATTTT
Found at i:27019259 original size:13 final size:13
Alignment explanation
Indices: 27019241--27019267 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27019231 AGCTTTTAAG
27019241 CAATGGTAATATC
1 CAATGGTAATATC
27019254 CAATGGTAATATC
1 CAATGGTAATATC
27019267 C
1 C
27019268 TTGAACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (13 bp):
CAATGGTAATATC
Found at i:27020122 original size:13 final size:13
Alignment explanation
Indices: 27020104--27020128 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27020094 GAATCGGTGG
27020104 AGACAGAAAGGTA
1 AGACAGAAAGGTA
27020117 AGACAGAAAGGT
1 AGACAGAAAGGT
27020129 GAGGAGAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (13 bp):
AGACAGAAAGGTA
Found at i:27024607 original size:15 final size:15
Alignment explanation
Indices: 27024561--27024609 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
27024551 AATATATATA
*
27024561 TTTATATTATTTTTAA
1 TTTATA-TATTTTTAT
27024577 TTTA-ATATTTAGTTAT
1 TTTATATATTT--TTAT
27024593 TTTATATATTTTTAT
1 TTTATATATTTTTAT
27024608 TT
1 TT
27024610 GTTAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
16 11 0.38
17 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTATATATTTTTAT
Found at i:27043624 original size:2 final size:2
Alignment explanation
Indices: 27043617--27043644 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
27043607 TATCATGATC
27043617 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
27043645 TAATTGATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:27053426 original size:12 final size:12
Alignment explanation
Indices: 27053401--27053437 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
27053391 AACAGAAAGG
27053401 AAAAAGAAAG-A
1 AAAAAGAAAGAA
27053412 AAAAAGAAAGAA
1 AAAAAGAAAGAA
*
27053424 AAAAGGAAAGAA
1 AAAAAGAAAGAA
27053436 AA
1 AA
27053438 GGAGAAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:27053445 original size:12 final size:11
Alignment explanation
Indices: 27053352--27053437 Score: 77
Period size: 11 Copynumber: 7.7 Consensus size: 11
27053342 AAACAAAATA
27053352 AAAG-AAAAAG
1 AAAGAAAAAAG
*
27053362 AAATAATAAAAG
1 AAAGAA-AAAAG
* * *
27053374 AAACAAGATAG
1 AAAGAAAAAAG
*
27053385 AAACG-AAACAG
1 AAA-GAAAAAAG
*
27053396 AAAGGAAAAAG
1 AAAGAAAAAAG
27053407 AAAGAAAAAAG
1 AAAGAAAAAAG
27053418 AAAGAAAAAAGG
1 AAAGAAAAAA-G
27053430 AAAGAAAA
1 AAAGAAAA
27053438 GGAGAAAGGG
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
10 4 0.06
11 39 0.63
12 19 0.31
ACGTcount: A:0.74, C:0.03, G:0.19, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAAG
Found at i:27061051 original size:24 final size:24
Alignment explanation
Indices: 27061024--27061070 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
27061014 ATTGAAATGG
27061024 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
27061048 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
27061071 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:27061352 original size:40 final size:40
Alignment explanation
Indices: 27061231--27061370 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
27061221 GACTTCGATT
* *
27061231 CGATGAGACACTGGGTGTCAAATTATTATTTCGGATATATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGAT-TATC
* * * * * *
27061272 CGATGAGGCACTAGGTG-CCAA-T-TTACTTTGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
*
27061309 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
* *
27061349 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
27061371 CTAGTGTGTT
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 17 0.22
38 11 0.14
39 2 0.03
40 34 0.43
41 15 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
Found at i:27064620 original size:49 final size:49
Alignment explanation
Indices: 27064548--27064647 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
27064538 AACCTCAACC
27064548 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
1 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
27064597 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
1 CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
27064646 CT
1 CT
27064648 AGAAAATATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (49 bp):
CTTTATCGTTTTCATTGCTAAAAGTAAAAAAGAAAATATTCTATTCCAA
Found at i:27067161 original size:3 final size:3
Alignment explanation
Indices: 27067153--27067178 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
27067143 TGGTTATAAT
27067153 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
27067179 TGTATGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:27072299 original size:36 final size:37
Alignment explanation
Indices: 27072251--27072324 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
27072241 TGTTAGTCCC
27072251 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
1 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
27072288 TGTAC-TTGACAAAATTTGAGATTTAGTCATTATACT
1 TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
27072324 T
1 T
27072325 AAAAAGTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 32 0.86
37 5 0.14
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (37 bp):
TGTACTTTGACAAAATTTGAGATTTAGTCATTATACT
Found at i:27089951 original size:249 final size:249
Alignment explanation
Indices: 27089480--27090011 Score: 877
Period size: 249 Copynumber: 2.1 Consensus size: 249
27089470 AACAAATAAG
* * * *
27089480 TCGCGCCCACGTGTATGCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTTT
* * * * *
27089545 TTGAGCAAATAGTATAAAATCGCTTCTAGTAGGATGCTGTTTGATAAGAATTTGTGAAATCGCAC
66 TTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCCCAC
* *
27089610 CCTCATCAAGGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGACGTTTCTGAG
131 CCTCATCAACGCGCTTTTGCTACAGTAAGTCCTGGAAGAAATAATTTTGACTTGACGTTTCTGAG
27089675 CAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
196 CAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * *
27089729 TCGTGCCCTCGTGGACGCTCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
1 TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGACTTGACGTT
*
27089794 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCCCG
65 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCCCA
** **
27089859 CCCTTGTGGACGCGCTTTTGCTACAGTAAGTCCTGGAA-AAATAATTTTGACTTGACGTTTCTGA
130 CCCTCATCAACGCGCTTTTGCTACAGTAAGTCCTGGAAGAAATAATTTTGACTTGACGTTTCTGA
27089923 GCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
195 GCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
27089978 TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAG
1 TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAG
27090012 CATGTTTGGG
Statistics
Matches: 261, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
249 147 0.56
250 114 0.44
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (249 bp):
TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTTT
TTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCCCAC
CCTCATCAACGCGCTTTTGCTACAGTAAGTCCTGGAAGAAATAATTTTGACTTGACGTTTCTGAG
CAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:27089977 original size:124 final size:125
Alignment explanation
Indices: 27089480--27090011 Score: 825
Period size: 125 Copynumber: 4.3 Consensus size: 125
27089470 AACAAATAAG
* * * * * *
27089480 TCGCGCCCACGTGTATGCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGAGTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
* * * *
27089544 TTTGAGCAAATAGTATAAAATCGCTTCTAGTAGGATGCTGTTTGATAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * ** * *
27089604 TCGCACCCTCATCAAGGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
27089669 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
27089729 TCGTGCCCTCGTGGACGCTCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
* *
27089794 TTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* * * *
27089854 TCCCGCCCTTGTGGACGCGCTTTTGCTACAGTAAGTCCTGGAA-AAATAATTTTGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
27089918 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
27089978 TCGCGCCCTCGTGGACGCACTTTTGCTACAGTAG
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
27090012 CATGTTTGGG
Statistics
Matches: 371, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
124 140 0.38
125 231 0.62
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (125 bp):
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:27095466 original size:21 final size:21
Alignment explanation
Indices: 27093178--27095478 Score: 2663
Period size: 21 Copynumber: 109.2 Consensus size: 21
27093168 ACCTTAAGGC
27093178 TTTTAAGTTAAGGGTTTAGGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
27093200 TTTTAAGTTAAGGTTTTAGAGT
1 TTTTAAGTTAAGG-GTTAGGGT
* *
27093222 TTTTAAGTTAAGAGTTAGAGT
1 TTTTAAGTTAAGGGTTAGGGT
27093243 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093264 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
27093286 TTTTAAGTTAAGGTTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27093307 TATTAAGTTAAAGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27093328 TTTTAATTTAAAGGTTAGTGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093349 TTTTAAGTTAATGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27093370 TTTTAAATTAAGGTTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * **
27093391 TATTAAGTTAAGGTTTAGCAT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093412 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093433 TTGTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27093454 TTTTAAATTATGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* * *
27093476 TTTTAAGATAAAGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093497 TTTTAAGTTGAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27093518 TTTTAATTTAAAGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093539 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27093560 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* ***
27093581 TTTTAAATTAACAATTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093602 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
*
27093624 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093645 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093666 TTTTAATTTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093687 TTTTAAGTTAAGGGTTATGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093708 TTTTAAGTTAAGGGTTACGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093729 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27093750 TTTTAAGTGT-AGGGTTAGGGT
1 TTTTAAGT-TAAGGGTTAGGGT
**
27093771 TTTTAAGTTAAGGGTTTATTGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
27093793 TTTTAAGTTAAGGTTTAGGGC
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093814 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093835 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27093856 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
*
27093878 TTTTAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093899 TTTTAAGTTAATGGTTTATGGT
1 TTTTAAGTTAA-GGGTTAGGGT
*
27093921 TTTTTAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
**
27093942 TTTTAAGTTAAGGGTTATAGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093963 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27093984 TTTTAATTTAAGGGTTAGAGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094005 TTTTAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094026 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
27094048 TTTTAAGTTAAGGTTTACGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094069 TGTTAAGTTAAGGGTTAGGGG
1 TTTTAAGTTAAGGGTTAGGGT
27094090 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27094111 TTTTAATTTAATGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094132 TTTTAAGTGAAGGTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
27094152 TTTTAAGTTAAGGGTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27094172 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094193 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094214 TATTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094235 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094256 TTTTAAGTTTAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094277 TTTTAAGTTAAGAGTTTATGGT
1 TTTTAAGTTAAG-GGTTAGGGT
*
27094299 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* **
27094320 TATTAAGTTAAGATTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094340 TTTTAATTTAAGGGTTATGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27094360 TTTTAAGTTTAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094381 TTTTAAGTTAAGAGTTTATGGT
1 TTTTAAGTTAAG-GGTTAGGGT
*
27094403 TTTTAAGTTAAGGTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27094423 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094444 TTTTAAGTTAAGAGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094465 TTTTAAGTTAAGGGCGTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
***
27094487 TTTTAAGTTAAACTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
***
27094507 TTTTAAGTTAAACTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27094527 TTTTAAGTTAAGGGTTAAGGTT
1 TTTTAAGTTAAGGGTT-AGGGT
* *
27094549 TTTTAAGTTAAGGGTTTATGAT
1 TTTTAAGTTAAGGG-TTAGGGT
*
27094571 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * **
27094592 TATGAAGTTAAGATTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094613 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27094634 TTTTAAGTTAAGGGTT-GTGGT
1 TTTTAAGTTAAGGGTTAG-GGT
* * *
27094655 TTTTAATTTAACGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094676 TTTTAAGTTAA-GATATAGAGT
1 TTTTAAGTTAAGGGT-TAGGGT
*
27094697 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094718 TTTTAAGTTAAGAGTTTGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094739 TTTTAAGTTAAGGGTTTGTGAT
1 TTTTAAGTTAAGGGTTAG-GGT
*
27094761 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27094782 TATTAAATTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094803 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094824 TTTTAAGTTAAGGGTTTATGGT
1 TTTTAAGTTAAGGG-TTAGGGT
* *
27094846 TTTGAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27094867 TTTTAGGTGAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27094888 TTTTAGGTGAAGGTTTAGGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27094908 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27094929 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094950 TTTTAATTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27094971 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27094992 TTTGAAGTTAAGGGTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27095013 TTTTAAGTTAATGGTTTATGGT
1 TTTTAAGTTAA-GGGTTAGGGT
* * * *
27095035 TTTTAAGTTATGGTTTACGAT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095056 TATTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27095077 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095098 TTTTAA-TTGAAGGTTTAGGGT
1 TTTTAAGTT-AAGGGTTAGGGT
*
27095119 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095140 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095161 TTTT-AGTGT-AGGGTTAGGAT
1 TTTTAAGT-TAAGGGTTAGGGT
* *
27095181 TTTTAAGTTAATGGTTTATGGT
1 TTTTAAGTTAA-GGGTTAGGGT
*
27095203 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27095224 TATTAAGTTAAGGTTTAGGAT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095245 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095266 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* * *
27095287 TATTAAGTTAAGGTTTAAGG-
1 TTTTAAGTTAAGGGTTAGGGT
*
27095307 TTTTAATTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095328 TTTTAAGGTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095349 TTTTAAGTTAAGGTTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
*
27095370 TATTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
* *
27095391 TTTTAATTTAAGGGTTAAGGT
1 TTTTAAGTTAAGGGTTAGGGT
27095412 TTTTAA-TTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
27095432 TTTTAAGTTAAGGGTTAGGGT
1 TTTTAAGTTAAGGGTTAGGGT
** *
27095453 TTTTTTGTTAAGGGTTGAAGGT
1 TTTTAAGTTAAGGGTT-AGGGT
27095475 TTTT
1 TTTT
27095479 GTCAATTAAA
Statistics
Matches: 1959, Mismatches: 284, Indels: 72
0.85 0.12 0.03
Matches are distributed among these distances:
20 194 0.10
21 1437 0.73
22 326 0.17
23 2 0.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (21 bp):
TTTTAAGTTAAGGGTTAGGGT
Found at i:27096940 original size:20 final size:20
Alignment explanation
Indices: 27096903--27096940 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27096893 TTTTATTTTA
*
27096903 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
27096923 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
27096941 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:27113859 original size:45 final size:45
Alignment explanation
Indices: 27113810--27114022 Score: 237
Period size: 45 Copynumber: 4.7 Consensus size: 45
27113800 ATACTAGAAA
*
27113810 CGAGTAAGATCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
** * *
27113855 CGAGTAAGACCGCAGCTAAAAGACGTTATGGCATCACAATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * * *
27113900 TGAGCAAGACCATAGTTGAAAGACGTTATGGCATCATGATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * ** * * *
27113945 CGAGTAAGACCATAGCTGAAGGATGCCATGGCATCACGAATCAAA
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * * **
27113990 CAAATAAGACCATAGTTGAAAGACACTATGGCA
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCA
27114023 GCACAACGGA
Statistics
Matches: 137, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (45 bp):
CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
Found at i:27114049 original size:46 final size:45
Alignment explanation
Indices: 27113992--27114159 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
27113982 GAATCAAACA
*
27113992 AATAAGACCATAGTTGAAAGACACTATGGCAGCACAACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACA-AACGGAAAATG
* * *
27114038 AATAAGACCATAGTTTAAAGAAACTATGGCAACATGGA-GGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACA--AACGGAAAATG
* * * * *
27114084 AATAAGACCATGGTTGAAAGACATTATGG-AATCAAGTC-GAGAATA
1 AATAAGACCATAGTTGAAAGACACTATGGCAA-CAA-ACGGAAAATG
* *
27114129 AATAAGACCATGGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
27114160 CCCTCCGATC
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
45 34 0.33
46 67 0.66
47 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18
Consensus pattern (45 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACAAACGGAAAATG
Found at i:27122251 original size:27 final size:27
Alignment explanation
Indices: 27122220--27122397 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
27122210 TAAACTGTAC
*
27122220 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
27122247 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
27122273 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
27122301 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
27122329 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
27122356 AGCCCTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
27122383 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27122398 GGCTCAATAA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:27122285 original size:54 final size:55
Alignment explanation
Indices: 27122220--27122397 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
27122210 TAAACTGTAC
* *
27122220 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
* * ** *
27122275 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAT-GAATATGAT
* * * * * *
27122329 GGCACTAAGTGTGCGATTTGATTACGTAGCCCTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
*
27122383 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27122398 GGCTCAATAA
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
54 60 0.58
55 43 0.42
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
Found at i:27122364 original size:82 final size:81
Alignment explanation
Indices: 27122221--27122376 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
27122211 AAACTGTACA
* * * *
27122221 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
27122286 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
27122302 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCCCTAAGT
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
27122366 GTGCGAGTTGA
64 GTGCGAATTGA
27122377 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 16 0.25
82 48 0.75
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27122388 original size:82 final size:81
Alignment explanation
Indices: 27122217--27122397 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
27122207 GATTAAACTG
* * * *
27122217 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27122282 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
27122298 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCCCT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27122362 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27122380 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27122398 GGCTCAATAA
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27126109 original size:27 final size:27
Alignment explanation
Indices: 27125807--27126106 Score: 301
Period size: 27 Copynumber: 11.1 Consensus size: 27
27125797 AATGGGCCAC
*
27125807 AAATTACC-AAATACCC-CTATAGGGTA
1 AAATTACCAAAATACCCTCGA-AGGGTA
*
27125833 AAATTA-CAGAAATGCCCTCGAAGGGTA
1 AAATTACCA-AAATACCCTCGAAGGGTA
* *
27125860 AAAATACCAAAATACCCTCAAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
* *
27125887 AAATTACCGAAATAACCC-C-ATAGGGTG
1 AAATTACCAAAAT-ACCCTCGA-AGGGTA
* * **
27125914 AAATTATCGAAATACCCTTAAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
*
27125941 AAATTACCGAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
27125968 AAATTACCAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
**
27125995 AAATTATTAAAATACCCAT--ATAGGGTA
1 AAATTACCAAAATACCC-TCGA-AGGGTA
*
27126022 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
** *
27126049 AAAAGACCAAAATACCCTCGAAAGAG-A
1 AAATTACCAAAATACCCTCG-AAGGGTA
* * *
27126076 AAATGACCGAAATACCCCCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
27126103 AAAT
1 AAAT
27126107 GACTGTTATA
Statistics
Matches: 234, Mismatches: 26, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.00
26 17 0.07
27 201 0.86
28 15 0.06
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGAAGGGTA
Found at i:27126357 original size:26 final size:26
Alignment explanation
Indices: 27126291--27126367 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
27126281 ACATATACTG
* * * *
27126291 TTACTGGCAGCTTTACTGCGTTACTG
1 TTACTGGCAGCTTTGCTGTGTTATTA
27126317 TTACTGGCAGCTTTGCTGTGTTATTA
1 TTACTGGCAGCTTTGCTGTGTTATTA
* *
27126343 TTACTGGTAGCTTTGCTGTGATATT
1 TTACTGGCAGCTTTGCTGTGTTATT
27126368 GGTGTGTTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.16, C:0.17, G:0.23, T:0.44
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGTGTTATTA
Found at i:27128406 original size:41 final size:40
Alignment explanation
Indices: 27128334--27128456 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 40
27128324 GTAATCACAT
* * * *
27128334 ATCGATGCCACTGTCCCAGATAGGGTTTTACACGAAACAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACAA
*
27128374 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAACACAA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACG-AA-ACAA
* * * *
27128417 GTCGGTGCTAACGTCCCAGACATGGTCTTACACGATAACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGA-AACA
27128457 TATATCGGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
40 2 0.03
41 31 0.45
42 31 0.45
43 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACAA
Found at i:27136127 original size:27 final size:27
Alignment explanation
Indices: 27136089--27136550 Score: 376
Period size: 27 Copynumber: 17.1 Consensus size: 27
27136079 AATGGGCCAC
* *
27136089 AAATTACCGAAATACCCCGATAGGGTT
1 AAATTATCGAAATACCCCGATAGGGTA
* *
27136116 AAATTACCGAAATGCCCTCGA-AGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
* *** *
27136143 AAATTATCAAAATACCTTTAAAGGGTA
1 AAATTATCGAAATACCCCGATAGGGTA
* * *
27136170 AAATTACCGAAATAACCCC-ATTGGGTT
1 AAATTATCGAAAT-ACCCCGATAGGGTA
**
27136197 AAATTATCGAAATA-CCCTTTAAGGGTA
1 AAATTATCGAAATACCCCGAT-AGGGTA
* *
27136224 AAATTACCGAAATACCCTC-AAAGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
* * *
27136251 AAATTA-CTGAAATACCCCCATTGTGTA
1 AAATTATC-GAAATACCCCGATAGGGTA
27136278 AAATTATCGAAATACCCTCGA-AGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
27136305 AAATTATCGAAATACCCTC-ATAGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
* *
27136332 AAAATATCGAAATACTCTCGA-AGGGTA
1 AAATTATCGAAATAC-CCCGATAGGGTA
* *
27136359 AAATTA-CTAAAATACCCCAATAGGGTA
1 AAATTATC-GAAATACCCCGATAGGGTA
27136386 AAATTATC-AAAGTACCCTCGA-AGGGTA
1 AAATTATCGAAA-TACCC-CGATAGGGTA
* * * * *
27136413 AAATTACCAAAATACCCCTATCGGGTT
1 AAATTATCGAAATACCCCGATAGGGTA
* *
27136440 AAATTATTGAAATACCCTGGA-AGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
* * * *
27136467 AAATTACCAAAATACCCTTGA-GGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
*
27136494 AAATTATCGAAATACCCCTATAGGGTA
1 AAATTATCGAAATACCCCGATAGGGTA
*
27136521 AAATTATCAAAATACCCTCG-TAGGGTA
1 AAATTATCGAAATACCC-CGATAGGGTA
27136548 AAA
1 AAA
27136551 AGACAAAAAT
Statistics
Matches: 353, Mismatches: 58, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 3 0.01
26 16 0.05
27 312 0.88
28 21 0.06
29 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (27 bp):
AAATTATCGAAATACCCCGATAGGGTA
Found at i:27136174 original size:54 final size:54
Alignment explanation
Indices: 27136110--27136578 Score: 441
Period size: 54 Copynumber: 8.7 Consensus size: 54
27136100 ATACCCCGAT
* * * *
27136110 AGGGTTAAATTACCGAAATGCCCTCGAAGGGTAAAATTATCAAAATACCTTTAA
1 AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTTAA
* * * * *
27136164 AGGGTAAAATTACCGAAATAACCC-C-ATTGGGTTAAATTATCGAAATACCCTTTA
1 AGGGTAAAATTATCGAAAT-ACCCTCGA-AGGGTAAAATTATCAAAATACCCTTAA
* * * ** *
27136218 AGGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTA-CTGAAATACCCCCAT
1 AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATC-AAAATACCCTTAA
* * * * *
27136272 TGTGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCAT
1 AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTTAA
* * *
27136326 AGGGTAAAAATATCGAAATACTCTCGAAGGGTAAAATTA-CTAAAATACCC-CAA
1 AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATC-AAAATACCCTTAA
* * *
27136379 TAGGGTAAAATTATC-AAAGTACCCTCGAAGGGTAAAATTACCAAAATACCCCTAT
1 -AGGGTAAAATTATCGAAA-TACCCTCGAAGGGTAAAATTATCAAAATACCCTTAA
* * * * * *
27136434 CGGGTTAAATTATTGAAATACCCTGGAAGGGTAAAATTACCAAAATACCCTTGA
1 AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTTAA
* * ***
27136488 GGGGTAAAATTATCGAAATACCC-CTATAGGGTAAAATTATCAAAATACCCTCGT
1 AGGGTAAAATTATCGAAATACCCTCGA-AGGGTAAAATTATCAAAATACCCTTAA
** * *
27136542 AGGGTAAAAAGA-CAAAAATACCCCCGAAGGGTAAAAT
1 AGGGTAAAATTATC-GAAATACCCTCGAAGGGTAAAAT
27136579 AACTGTTATA
Statistics
Matches: 352, Mismatches: 48, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
53 14 0.04
54 326 0.93
55 12 0.03
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (54 bp):
AGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTTAA
Found at i:27136224 original size:81 final size:81
Alignment explanation
Indices: 27136089--27136578 Score: 522
Period size: 81 Copynumber: 6.0 Consensus size: 81
27136079 AATGGGCCAC
* * * *
27136089 AAATTACCGAAATACCCCGATAGGGTTAAATTACCGAAATGCCCTCGAAGGGTAAAATTATCAAA
1 AAATTACCGAAATACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
* *
27136154 ATACCTTTAAAGGGTA
66 ATACCCTCAAAGGGTA
* * ** * *
27136170 AAATTACCGAAATAACCCC-ATTGGGTTAAATTATCGAAATACCCTTTAAGGGTAAAATTACCGA
1 AAATTACCGAAAT-ACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAA
27136234 AATACCCTCAAAGGGTA
65 AATACCCTCAAAGGGTA
* * * * *
27136251 AAATTACTGAAATACCCCCATTGTGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCGAA
1 AAATTACCGAAATACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
*
27136316 ATACCCTCATAGGGTA
66 ATACCCTCAAAGGGTA
* * * * * *
27136332 AAAATATCGAAATACTCTCGA-AGGGTAAAATTA-CTAAAATACCC-CAATAGGGTAAAATTATC
1 AAATTACCGAAATAC-CCCTATAGGGTAAAATTATC-GAAATACCCTCGA-AGGGTAAAATTATC
* *
27136394 AAAGTACCCTCGAAGGGTA
63 AAAATACCCTCAAAGGGTA
* * * * * *
27136413 AAATTACCAAAATACCCCTATCGGGTTAAATTATTGAAATACCCTGGAAGGGTAAAATTACCAAA
1 AAATTACCGAAATACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
** *
27136478 ATACCCTTGAGGGGTA
66 ATACCCTCAAAGGGTA
* * * **
27136494 AAATTATCGAAATACCCCTATAGGGTAAAATTATCAAAATACCCTCGTAGGGTAAAAAGA-CAAA
1 AAATTACCGAAATACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATC-AA
* *
27136558 AATACCCCCGAAGGGTA
65 AATACCCTCAAAGGGTA
27136575 AAAT
1 AAAT
27136579 AACTGTTATA
Statistics
Matches: 343, Mismatches: 57, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
80 12 0.03
81 322 0.94
82 9 0.03
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (81 bp):
AAATTACCGAAATACCCCTATAGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTATCAAA
ATACCCTCAAAGGGTA
Found at i:27136789 original size:26 final size:26
Alignment explanation
Indices: 27136734--27136833 Score: 94
Period size: 26 Copynumber: 3.8 Consensus size: 26
27136724 AGGGGAAGTA
** * *
27136734 TACTA-TACTGGTGGCTTTGCCATAT
1 TACTATTACTGGCAGCTTTGCTACAT
*
27136759 ATACTATTACTGGCAGCTTTGCTACGT
1 -TACTATTACTGGCAGCTTTGCTACAT
* * **
27136786 TACTGTTACTGGTAGCTTTGCTGTAT
1 TACTATTACTGGCAGCTTTGCTACAT
*
27136812 TATTATTACTGGCAGCTTTGCT
1 TACTATTACTGGCAGCTTTGCT
27136834 GCGATATTAG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 45 0.75
27 15 0.25
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTACAT
Found at i:27136834 original size:26 final size:26
Alignment explanation
Indices: 27136760--27136835 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
27136750 TTGCCATATA
* *
27136760 TACTATTACTGGCAGCTTTGCTACGT
1 TACTATTACTGGCAGCTTTGCTGCAT
* * *
27136786 TACTGTTACTGGTAGCTTTGCTGTAT
1 TACTATTACTGGCAGCTTTGCTGCAT
*
27136812 TATTATTACTGGCAGCTTTGCTGC
1 TACTATTACTGGCAGCTTTGCTGC
27136836 GATATTAGTG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCAT
Found at i:27139826 original size:45 final size:45
Alignment explanation
Indices: 27139724--27139850 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 45
27139714 TTTCTTGAAG
* * * * * *
27139724 GAAATGATTAAGACCATAG-TAGAAAGACACTACGACACTATATCG
1 GAAATGAATAAGACCATAGCTA-AAAGACACTATGGCACCATACCA
*
27139769 GAAATAAATAAGACCATAGCTAAAAGACACTATGGCACCATACCA
1 GAAATGAATAAGACCATAGCTAAAAGACACTATGGCACCATACCA
* * * **
27139814 TAAATGAGTAAGACCATAGCTGAAAGACGTTATGGCA
1 GAAATGAATAAGACCATAGCTAAAAGACACTATGGCA
27139851 TCATGATTCT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 66 0.97
46 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (45 bp):
GAAATGAATAAGACCATAGCTAAAAGACACTATGGCACCATACCA
Found at i:27139928 original size:46 final size:46
Alignment explanation
Indices: 27139818--27139977 Score: 171
Period size: 45 Copynumber: 3.5 Consensus size: 46
27139808 ATACCATAAA
**
27139818 TGAGTAAGACCATAGCTGAAAGACGTTATGGCATCA-TGATTCTAT
1 TGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAAATTCTAT
* * * * *
27139863 CGAGTAAAACTATAGCTGAAAGATGTTATGGAATCACAAATTCTAT
1 TGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAAATTCTAT
* ** * *
27139909 TGAGTAAGACCATAACTGAAAGACACTATGGCATCACAAA-TCAAA
1 TGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAAATTCTAT
* * *
27139954 CGAATAAGACCATAGTTGAAAGAC
1 TGAGTAAGACCATAGCTGAAAGAC
27139978 ACTATGATAA
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 54 0.58
46 39 0.42
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (46 bp):
TGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACAAATTCTAT
Found at i:27139978 original size:45 final size:45
Alignment explanation
Indices: 27139770--27140081 Score: 182
Period size: 46 Copynumber: 6.9 Consensus size: 45
27139760 ACTATATCGG
* * * * *
27139770 AAATAAATAAGACCATAGCTAAAAGACACTATGGCACCATACCAT-
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCACA-AATC
* ** ** *
27139815 AAATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTC
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCACAAATC
* * * * *** *
27139860 -TATCGAGTAAAACTATAGCTGAAAGATGTTATGGAATCACAAATTC
1 AAAT-GAATAAGACCATAGCTGAAAGACACTATGGCATCACAAA-TC
* * * *
27139906 TATTGAGTAAGACCATAACTGAAAGACACTATGGCATCACAAATC
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCACAAATC
* * ** * * **
27139951 AAACGAATAAGACCATAGTTGAAAGACACTATGATAACACGACAGA
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCAC-AAATC
* ** * *
27139997 AAATGAATAAAACCATAATTGAAAGACACTATGGCA--ACATGATGAA
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCACA-AAT--C
* * *
27140043 AAATGAATAAGACCATGGTTGAAAGACACTATGACATCA
1 AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCA
27140082 AGTCCCGAAT
Statistics
Matches: 208, Mismatches: 49, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.00
44 6 0.03
45 99 0.48
46 100 0.48
47 1 0.00
48 1 0.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGCTGAAAGACACTATGGCATCACAAATC
Found at i:27153368 original size:15 final size:14
Alignment explanation
Indices: 27153341--27153400 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
27153331 CACGATCAAC
*
27153341 AAAAATTAAAAGAA
1 AAAAATGAAAAGAA
27153355 AAAAATGAAGAAGAA
1 AAAAATGAA-AAGAA
* *
27153370 AAAGAAGGAAAGGAA
1 AAA-AATGAAAAGAA
27153385 CAAAGAA-GAAAAGAA
1 -AAA-AATGAAAAGAA
27153400 A
1 A
27153401 CTAAAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 9 0.23
15 19 0.49
16 11 0.28
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (14 bp):
AAAAATGAAAAGAA
Found at i:27153389 original size:16 final size:17
Alignment explanation
Indices: 27153370--27153412 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
27153360 TGAAGAAGAA
* *
27153370 AAAGAAGGAAAGGAAC-
1 AAAGAAGAAAAGAAACT
27153386 AAAGAAGAAAAGAAACT
1 AAAGAAGAAAAGAAACT
27153403 AAAGAA-AAAA
1 AAAGAAGAAAA
27153413 ATTATAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.72, C:0.05, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAGAAGAAAAGAAACT
Found at i:27159292 original size:42 final size:42
Alignment explanation
Indices: 27159215--27159318 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 42
27159205 ATGCCACATG
* ** *
27159215 GCCTGGACACACGCCCATGTCCTTGTCCATATGACTCATACA
1 GCCTGGACACATGCCCATGTCCTTACCCATATGACTCACACA
* * **
27159257 GCCTGGACACATGCCCATGTCCTTACCCGTGTGACTCACATG
1 GCCTGGACACATGCCCATGTCCTTACCCATATGACTCACACA
* *
27159299 GCATGGGCACATGCCCATGT
1 GCCTGGACACATGCCCATGT
27159319 GTTCTGCCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (42 bp):
GCCTGGACACATGCCCATGTCCTTACCCATATGACTCACACA
Found at i:27165469 original size:45 final size:45
Alignment explanation
Indices: 27165404--27165535 Score: 124
Period size: 45 Copynumber: 3.0 Consensus size: 45
27165394 ACGTGTATCG
* * * *
27165404 GGTACCATTGATTATAAAGGTGGTTGTTGTATGTTGATTCCACCA
1 GGTACCATTGATTATAAAGGTGATTGCTATATGCTGATTCCACCA
* * *
27165449 GGTACTATTGATTATGAAGGTGATTGCTATGTGCTGATTCCACCA
1 GGTACCATTGATTATAAAGGTGATTGCTATATGCTGATTCCACCA
* * ** * * *
27165494 AGTATCATTGACCATAAGGGTG-GTGCTATGTGCTGA-TCCACC
1 GGTACCATTGATTATAAAGGTGATTGCTATATGCTGATTCCACC
27165536 GTGTATCTGT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 6 0.08
44 13 0.18
45 53 0.74
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (45 bp):
GGTACCATTGATTATAAAGGTGATTGCTATATGCTGATTCCACCA
Found at i:27170282 original size:45 final size:45
Alignment explanation
Indices: 27170213--27170317 Score: 165
Period size: 45 Copynumber: 2.3 Consensus size: 45
27170203 TATTACGTGT
*
27170213 ACCGGGTACCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
1 ACCGGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* *
27170258 ACCGGGTACTATTGATTATGAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* *
27170303 ACCGAGTATCATTGA
1 ACCGGGTACCATTGA
27170318 CCATGTGATG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (45 bp):
ACCGGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
Found at i:27174907 original size:53 final size:53
Alignment explanation
Indices: 27174827--27174933 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
27174817 TATTTTGAAT
* *
27174827 TGAATCATCTCTAATTTTTGCATATTTCTAATAAGTTTGTTGCTAATTGTGCA
1 TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
*
27174880 TGAATCATCTCTAATTTTTGCATATTTCCAGTAAGTTCGTTGCTAATTGTGCA
1 TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
27174933 T
1 T
27174934 TAATTTTCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.46
Consensus pattern (53 bp):
TGAATCATCTCTAATTTTTGCATATTTCCAATAAGTTCGTTGCTAATTGTGCA
Found at i:27185839 original size:16 final size:17
Alignment explanation
Indices: 27185808--27185840 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27185798 TATAAAAATT
27185808 AAATTAAAAACAAATAA
1 AAATTAAAAACAAATAA
27185825 AAATTAAAAA-AAATAA
1 AAATTAAAAACAAATAA
27185841 TGGCTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATTAAAAACAAATAA
Found at i:27186955 original size:14 final size:12
Alignment explanation
Indices: 27186926--27186957 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
27186916 GTCACATGGT
27186926 TGTGTGGCAGCC
1 TGTGTGGCAGCC
*
27186938 TGTGTGGCAGTC
1 TGTGTGGCAGCC
27186950 TGTGTGGC
1 TGTGTGGC
27186958 TCACACGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.19, G:0.44, T:0.31
Consensus pattern (12 bp):
TGTGTGGCAGCC
Found at i:27191991 original size:3 final size:3
Alignment explanation
Indices: 27191985--27192013 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
27191975 AGAAGAAGAA
27191985 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
27192014 CCCTGCAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:27195836 original size:14 final size:14
Alignment explanation
Indices: 27195812--27195848 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
27195802 TATCTTATTA
27195812 ATTGT-AAAATTTT
1 ATTGTCAAAATTTT
*
27195825 ATTTTCAAAA-TTT
1 ATTGTCAAAATTTT
27195838 ATTGTCAAAAT
1 ATTGTCAAAAT
27195849 CCCCCCAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (14 bp):
ATTGTCAAAATTTT
Found at i:27196161 original size:14 final size:13
Alignment explanation
Indices: 27196125--27196178 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
27196115 TAAGATGAAT
*
27196125 TAAAATAAATAAA
1 TAAAAGAAATAAA
27196138 TAAAAGAAATAAA
1 TAAAAGAAATAAA
*
27196151 TAATGAGAAATAAA
1 TAA-AAGAAATAAA
* * *
27196165 CAAATGAACTAAA
1 TAAAAGAAATAAA
27196178 T
1 T
27196179 CGATAAACCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
13 22 0.67
14 11 0.33
ACGTcount: A:0.69, C:0.04, G:0.07, T:0.20
Consensus pattern (13 bp):
TAAAAGAAATAAA
Found at i:27198893 original size:19 final size:18
Alignment explanation
Indices: 27198854--27198898 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
27198844 TTTAAAATTT
27198854 TTAAATTTTAATTAAATAA
1 TTAAATTTTAA-TAAATAA
27198873 TTAAATTTTAA-AAATGGAA
1 TTAAATTTTAATAAAT--AA
27198892 TTAAATT
1 TTAAATT
27198899 AATTAGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
19 20 0.83
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
TTAAATTTTAATAAATAA
Found at i:27202828 original size:27 final size:26
Alignment explanation
Indices: 27202795--27203203 Score: 388
Period size: 27 Copynumber: 15.2 Consensus size: 26
27202785 TTACACTATT
* *
27202795 ATGACCAAAATACTTCCATAGGGTAAA
1 ATGACCGAAATAC-CCCATAGGGTAAA
* * * *
27202822 ATCACCAAAATACCCCCATAAGGTAGA
1 ATGACCGAAATA-CCCCATAGGGTAAA
27202849 ATGACCGAAATACCTCCATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
* * *
27202876 ATGACCAAAACACCCCCATATGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
27202903 ATAATCGAAATACCCTCATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
* *
27202930 ATGACCAAAATACCCCCATAGGATAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
* *
27202957 ATAACCGGAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
27202984 ATGATCGAAATACCCTCATAGGGTAGA
1 ATGACCGAAATACCC-CATAGGGTAAA
* *
27203011 ATAACCGAAATACCTCCATAGGCTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
* *
27203038 ATAACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
27203065 ATGACCAAAATACCCTCATAGGATAAA
1 ATGACCGAAATACCC-CATAGGGTAAA
*
27203092 ATGA-CTAGAATACCCCTATAGGGTAAA
1 ATGACCGA-AATACCCC-ATAGGGTAAA
* *
27203119 ATGACCGGAATACCCTCATAGGGTAGA
1 ATGACCGAAATACCC-CATAGGGTAAA
* * * * *
27203146 ATAACTGAAATACTCCGTAGGCTAAA
1 ATGACCGAAATACCCCATAGGGTAAA
*
27203172 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATA-CCCCATAGGGTAAA
27203199 ATGAC
1 ATGAC
27203204 TATTATACCT
Statistics
Matches: 312, Mismatches: 55, Indels: 30
0.79 0.14 0.08
Matches are distributed among these distances:
26 31 0.10
27 270 0.87
28 11 0.04
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:27202854 original size:54 final size:53
Alignment explanation
Indices: 27202795--27203203 Score: 433
Period size: 54 Copynumber: 7.6 Consensus size: 53
27202785 TTACACTATT
* * * * *
27202795 ATGACCAAAATACTTCCATAGGGTAAAATCACCAAAATACCCCCATAAGGTAGA
1 ATGACCGAAATAC-CCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* *
27202849 ATGACCGAAATACCTCCATAGGGTAAAATGACCAAAACACCCCCATATGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* * *
27202903 ATAATCGAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGATAAA
1 ATGACCGAAATACCC-CATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* * * * * *
27202957 ATAACCGGAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAGA
1 ATGACCGAAATACCCC-ATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* * * *
27203011 ATAACCGAAATACCTCCATAGGCTAAAATAACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* * * * *
27203065 ATGACCAAAATACCCTCATAGGATAAAATGACTAGAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCC-CATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* * * ** * * *
27203119 ATGACCGGAATACCCTCATAGGGTAGAATAACTGAAATA-CTCCGTAGGCTAAA
1 ATGACCGAAATACCC-CATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
*
27203172 ATGATCGAAATACCCCCATAGGGTAAAATGAC
1 ATGACCGAAATA-CCCCATAGGGTAAAATGAC
27203204 TATTATACCT
Statistics
Matches: 302, Mismatches: 47, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
53 37 0.12
54 263 0.87
55 2 0.01
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (53 bp):
ATGACCGAAATACCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
Found at i:27202933 original size:81 final size:81
Alignment explanation
Indices: 27202795--27203203 Score: 444
Period size: 81 Copynumber: 5.1 Consensus size: 81
27202785 TTACACTATT
** * * * * *
27202795 ATGACCAAAATACTTCCATAGGGTAAAATCACCAAAATACCCCCATAAGGTAGAATGACCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
27202860 ACCTCCATAGGGTAAA
66 ACCCCCATAGGGTAAA
* * * *
27202876 ATGACCAAAACACCCCCATATGGTAAAATAATCGAAATACCCTCATAGGGTAAAATGACCAAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
*
27202941 ACCCCCATAGGATAAA
66 ACCCCCATAGGGTAAA
* ** * * * * *
27202957 ATAACCGGAATACCCCTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAGAATAACCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
* *
27203022 ACCTCCATAGGCTAAA
66 ACCCCCATAGGGTAAA
* * * * * *
27203038 ATAACCAAAATACCCCTATAGGGTAAAATGACCAAAATACCCTCATAGGATAAAATGA-CTAGAA
1 ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGA-AA
*
27203102 TACCCCTATAGGGTAAA
65 TACCCCCATAGGGTAAA
** * * * * * * *
27203119 ATGACCGGAATACCCTCATAGGGTAGAATAACTGAAATACTC-CGTAGGCTAAAATGATCGAAAT
1 ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
27203183 ACCCCCATAGGGTAAA
66 ACCCCCATAGGGTAAA
27203199 ATGAC
1 ATGAC
27203204 TATTATACCT
Statistics
Matches: 276, Mismatches: 50, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
80 38 0.14
81 238 0.86
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (81 bp):
ATGACCAAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAATGACCGAAAT
ACCCCCATAGGGTAAA
Found at i:27208278 original size:20 final size:20
Alignment explanation
Indices: 27208205--27208278 Score: 50
Period size: 21 Copynumber: 3.8 Consensus size: 20
27208195 TGTTAAGAAG
27208205 AAATTTTCTA-GTTAAGAA-TT
1 AAATTTT-TATGTTAA-AATTT
*
27208225 AAATTTTT-T-TTTAAATTT
1 AAATTTTTATGTTAAAATTT
* *
27208243 -CATTTGTTCTGTTTAAAATTT
1 AAATTT-TTATG-TTAAAATTT
27208264 AAATTTTTATGTTAA
1 AAATTTTTATGTTAA
27208279 TAAAGGGGGT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
17 6 0.14
18 7 0.17
19 2 0.05
20 11 0.26
21 12 0.29
22 4 0.10
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (20 bp):
AAATTTTTATGTTAAAATTT
Done.