Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 97 of 213
Found at i:27209523 original size:15 final size:15
Alignment explanation
Indices: 27209503--27209533 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27209493 TTTCTTCAGA
27209503 TTTATTTAACTATTT
1 TTTATTTAACTATTT
*
27209518 TTTATTTAATTATTT
1 TTTATTTAACTATTT
27209533 T
1 T
27209534 CAGCTTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATTTAACTATTT
Found at i:27229333 original size:25 final size:25
Alignment explanation
Indices: 27229287--27229334 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
27229277 AGATTTCAAT
* *
27229287 TTTATTTAATTATTTAATTTTTAAA
1 TTTATTGAATTATTAAATTTTTAAA
27229312 TTTATTGAATTA-TAAATATTTTA
1 TTTATTGAATTATTAAAT-TTTTA
27229335 TACTAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTATTGAATTATTAAATTTTTAAA
Found at i:27231023 original size:50 final size:50
Alignment explanation
Indices: 27230959--27231090 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
27230949 TTATTAGATA
* * *
27230959 TCCCACGTAAGACCATGTCTGGGACATTGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
* * * **
27231009 TCCCCCGTAAGACCATGTTTGGGACATGGCATAGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
* ** * *
27231059 TCTCATATAAGACCATATCTGGGATATGGCAT
1 TCCCACGTAAGACCATGTCTGGGACATGGCAT
27231091 TTGCAATATA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAGG
Found at i:27231129 original size:49 final size:50
Alignment explanation
Indices: 27230965--27231141 Score: 144
Period size: 50 Copynumber: 3.6 Consensus size: 50
27230955 GATATCCCAC
* * * * * * ** * **
27230965 GTAAGACCATGTCTGGGACATTGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTTGCACAGATAGGAGAACTCTCAT
* ** * *
27231015 GTAAGACCATGTTTGGGACATGGCATAGGCACCGATATGAGAACTCTCAT
1 GTAAGACCATGTCTGGGACATGGCATTTGCACAGATAGGAGAACTCTCAT
* * * *
27231065 ATAAGACCATATCTGGGATATGGCATTTGCA-ATATAGGA-AACATCTCAT
1 GTAAGACCATGTCTGGGACATGGCATTTGCACAGATAGGAGAAC-TCTCAT
27231114 GTAAGACCATGTCTGGGACATGGC-TTTG
1 GTAAGACCATGTCTGGGACATGGCATTTG
27231142 GCATGTTATT
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
48 7 0.07
49 32 0.31
50 65 0.62
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTTGCACAGATAGGAGAACTCTCAT
Found at i:27235370 original size:21 final size:21
Alignment explanation
Indices: 27235341--27235382 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
27235331 TATTAATTCA
27235341 TAATATAA-TTAATTTTAATTT
1 TAATATAATTTAA-TTTAATTT
*
27235362 TAATCTAATTTAATTTAATTT
1 TAATATAATTTAATTTAATTT
27235383 GGTTTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATATAATTTAATTTAATTT
Found at i:27237273 original size:31 final size:32
Alignment explanation
Indices: 27237224--27237286 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
27237214 TAAGGATGAA
27237224 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
1 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
27237256 ATTTTGTTAA-GGGGGAGAGTTGTAATACCTC
1 ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
27237287 GGTTTCGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.35
Consensus pattern (32 bp):
ATTTTGTTAAGGGGGGAGAGTTGTAATACCTC
Found at i:27238553 original size:27 final size:27
Alignment explanation
Indices: 27238523--27238693 Score: 127
Period size: 27 Copynumber: 6.3 Consensus size: 27
27238513 TGTCAGCAAT
*
27238523 GGAATGCCTTTGTGGTG-AATTATGAAA
1 GGAAAGCCTTTGTGGTGCAA-TATGAAA
*
27238550 GGAACA-CCTTTGTGGTGTAATATGAAA
1 GGAA-AGCCTTTGTGGTGCAATATGAAA
* *
27238577 GGAAAGCCTTTATGGCGCAATATGAAA
1 GGAAAGCCTTTGTGGTGCAATATGAAA
* *
27238604 -GAAATG-TTGTTGTGGTG-AATTATAAAA
1 GGAAA-GCCT-TTGTGGTGCAA-TATGAAA
* * * *
27238631 GGAACGTCTTTATGGTGCAATATAAAA
1 GGAAAGCCTTTGTGGTGCAATATGAAA
* * *
27238658 GGAAAGCCTTTTTAGCGCAATATGAAA
1 GGAAAGCCTTTGTGGTGCAATATGAAA
* *
27238685 AGAACGCCT
1 GGAAAGCCT
27238694 CTATGGAGAA
Statistics
Matches: 116, Mismatches: 19, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.07
27 100 0.86
28 8 0.07
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (27 bp):
GGAAAGCCTTTGTGGTGCAATATGAAA
Found at i:27238667 original size:81 final size:81
Alignment explanation
Indices: 27238532--27238684 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
27238522 TGGAATGCCT
* * * * *
27238532 TTGTGGTGAATTATGAAAGGAACACCTTTGTGGTGTAATATGAAAGGAAAGCCTTTATGGCGCAA
1 TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
27238597 TATGAAAGAAATGTTG
66 TATGAAAGAAATGTTG
** *
27238613 TTGTGGTGAATTATAAAAGGAACGTCTTTATGGTGCAATATAAAAGGAAAGCCTTTTTAGCGCAA
1 TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
27238678 TATGAAA
66 TATGAAA
27238685 AGAACGCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (81 bp):
TTGTGGTGAATTATAAAAGGAACACCTTTATGGTGCAATATAAAAGGAAAGCCTTTATAGCGCAA
TATGAAAGAAATGTTG
Found at i:27240578 original size:18 final size:18
Alignment explanation
Indices: 27240529--27240579 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
27240519 CTCCTCATAT
*
27240529 TCTTCATATTCATCTTTA
1 TCTTCATCTTCATCTTTA
* * * *
27240547 CCTTGAGCTCCATCTTTA
1 TCTTCATCTTCATCTTTA
27240565 TCTTCATCTTCATCT
1 TCTTCATCTTCATCT
27240580 CATTCCTCCG
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.18, C:0.29, G:0.04, T:0.49
Consensus pattern (18 bp):
TCTTCATCTTCATCTTTA
Found at i:27247722 original size:23 final size:23
Alignment explanation
Indices: 27247694--27247739 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
27247684 TTTAATTAAA
*
27247694 TTATTA-AAAGGTTTGATGATAAG
1 TTATTACAAA-GTTTCATGATAAG
27247717 TTATTACAAAGTTTCATGATAAG
1 TTATTACAAAGTTTCATGATAAG
27247740 GTTGACAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.39
Consensus pattern (23 bp):
TTATTACAAAGTTTCATGATAAG
Found at i:27251202 original size:17 final size:17
Alignment explanation
Indices: 27251180--27251218 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
27251170 AAGTTAGATA
*
27251180 AAATAATTAAAATAAAT
1 AAATAACTAAAATAAAT
*
27251197 AAATAACTAAGATAAAT
1 AAATAACTAAAATAAAT
27251214 AAATA
1 AAATA
27251219 GAACAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAATAACTAAAATAAAT
Found at i:27252137 original size:27 final size:27
Alignment explanation
Indices: 27252107--27252161 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
27252097 CATCGATACT
27252107 CATAGAAAGGTGTATCGAGACTTCGTA
1 CATAGAAAGGTGTATCGAGACTTCGTA
*
27252134 CATAGGAAGGTGTATCGAGACTTCGTA
1 CATAGAAAGGTGTATCGAGACTTCGTA
27252161 C
1 C
27252162 TGTAGGTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (27 bp):
CATAGAAAGGTGTATCGAGACTTCGTA
Found at i:27254158 original size:33 final size:33
Alignment explanation
Indices: 27254096--27254167 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
27254086 AGTATTCTAT
* *
27254096 TTTTTGTACATAATTAACTATTTGAATTTTGAA
1 TTTTTGTACATAATTAAATATTTGAATTTTAAA
** **
27254129 TTTTTGTAGTTAATTAAATATTTTTATTTTAAA
1 TTTTTGTACATAATTAAATATTTGAATTTTAAA
27254162 TATTTT
1 T-TTTT
27254168 TACTTACCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (33 bp):
TTTTTGTACATAATTAAATATTTGAATTTTAAA
Found at i:27255526 original size:27 final size:27
Alignment explanation
Indices: 27255471--27255544 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
27255461 GGCGATCCTA
* *
27255471 GTTCACC-AACCTATTGGCAAAATCCT
1 GTTCACCAAACCTACTGGCAAAACCCT
*
27255497 GTTCACCAAACCTACTGGC-TAACCCTT
1 GTTCACCAAACCTACTGGCAAAACCC-T
* * *
27255524 GTTCGCCAATCATACTGGCAA
1 GTTCACCAAACCTACTGGCAA
27255545 TCTCAACTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 11 0.29
27 27 0.71
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (27 bp):
GTTCACCAAACCTACTGGCAAAACCCT
Found at i:27261379 original size:26 final size:26
Alignment explanation
Indices: 27261337--27261388 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27261327 GTTAATCCTA
27261337 TTTGATATGGCAATGTTTGTGCTTTTG
1 TTTGATATGGCAATGTTT-TGCTTTTG
* *
27261364 TTTGATA-GGCATTGTTTTGGTTTTG
1 TTTGATATGGCAATGTTTTGCTTTTG
27261389 GTAATTCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 9 0.39
27 7 0.30
ACGTcount: A:0.13, C:0.06, G:0.27, T:0.54
Consensus pattern (26 bp):
TTTGATATGGCAATGTTTTGCTTTTG
Found at i:27267452 original size:43 final size:43
Alignment explanation
Indices: 27267359--27267456 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
27267349 TGACATCTAT
* * *
27267359 ATGTAAGACCATGTCTGGGACATTGGCATCGATATGTAATTTC
1 ATGTAAGACCATGGCTGGGACATTGGCATCGATACGTAATTAC
* *
27267402 GTATAAGACCATGGCTGGG-CTATTGGCATCGATACG-AGATTAC
1 ATGTAAGACCATGGCTGGGAC-ATTGGCATCGATACGTA-ATTAC
27267445 ATGTAAGACCAT
1 ATGTAAGACCAT
27267457 ATTTGGGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.04
43 44 0.96
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCATGGCTGGGACATTGGCATCGATACGTAATTAC
Found at i:27270059 original size:16 final size:16
Alignment explanation
Indices: 27270040--27270091 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
27270030 TAATGAATAT
27270040 TGGGTTTAAATTTTAA
1 TGGGTTTAAATTTTAA
**
27270056 TGGGTTTAGGCTTTTAA
1 TGGGTTTA-AATTTTAA
*
27270073 -GGGTATTTAATTTTAA
1 TGGGT-TTAAATTTTAA
27270089 TGG
1 TGG
27270092 TATTTAAGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (16 bp):
TGGGTTTAAATTTTAA
Found at i:27270093 original size:16 final size:16
Alignment explanation
Indices: 27270067--27270106 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
27270057 GGGTTTAGGC
27270067 TTTTAAGGGTATTTAA
1 TTTTAAGGGTATTTAA
*
27270083 TTTTAATGGTATTTAA
1 TTTTAAGGGTATTTAA
*
27270099 GTTTAAGG
1 TTTTAAGG
27270107 TTTAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTTTAAGGGTATTTAA
Found at i:27270632 original size:21 final size:21
Alignment explanation
Indices: 27270608--27270649 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
27270598 AATTTTGTTG
*
27270608 TATTTTCTTTTAATT-TTTAAA
1 TATTTT-TTGTAATTATTTAAA
27270629 TATTTTTTGTAATTATTTAAA
1 TATTTTTTGTAATTATTTAAA
27270650 AAATCATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTTTTGTAATTATTTAAA
Found at i:27270746 original size:21 final size:20
Alignment explanation
Indices: 27270703--27270747 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
27270693 ATTAAAAAAA
*
27270703 TAATTATTTTTAAGATTTTT
1 TAATTATTTTTAAAATTTTT
27270723 TAATT-TTTTTAAAATATTTGT
1 TAATTATTTTTAAAAT-TTT-T
27270744 TAAT
1 TAAT
27270748 ACGAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 8 0.36
21 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
TAATTATTTTTAAAATTTTT
Found at i:27272708 original size:54 final size:54
Alignment explanation
Indices: 27272637--27272746 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
27272627 AATTGAGTTA
* * * *
27272637 AATAATTAAGCTTTATTAAAATATGAAATAGAATAAAAGGATAAAACACACTTG
1 AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
** *
27272691 AATAATTAAACTCTATTAAAATATAAAATAGAATAGGAGAATAAAACGCACTTG
1 AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
27272745 AA
1 AA
27272747 CATGATTGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (54 bp):
AATAATTAAACTCTATTAAAATATAAAATAGAATAAAAGAATAAAACACACTTG
Found at i:27273753 original size:27 final size:27
Alignment explanation
Indices: 27273721--27273785 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
27273711 TTAAAAAAAT
27273721 ATGTAGACTTAAATAACACTAAGATTA
1 ATGTAGACTTAAATAACACTAAGATTA
*
27273748 ATGTAGACTTAAATAACACTAGGATTA
1 ATGTAGACTTAAATAACACTAAGATTA
*
27273775 ATGCA-ACTTAA
1 ATGTAGACTTAA
27273786 CAAGCAAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (27 bp):
ATGTAGACTTAAATAACACTAAGATTA
Found at i:27273870 original size:14 final size:14
Alignment explanation
Indices: 27273848--27273883 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
27273838 ACAATATCCA
*
27273848 AATAATAACAACAT
1 AATAGTAACAACAT
27273862 AATAGTAACAACAT
1 AATAGTAACAACAT
27273876 AATAGTAA
1 AATAGTAA
27273884 AATGGTAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (14 bp):
AATAGTAACAACAT
Found at i:27275165 original size:31 final size:32
Alignment explanation
Indices: 27275101--27275167 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 32
27275091 CAAAAAAAAA
* *
27275101 TTATTGTTTTTTTTACTATTTTCTTGCTTTTT
1 TTATTGTTTTTGTTACTATTTTCTTGATTTTT
27275133 TTATTG-TTTTGTTACTATTTTCTT-ATTGTTT
1 TTATTGTTTTTGTTACTATTTTCTTGATT-TTT
27275164 TTAT
1 TTAT
27275168 CACTATTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 2 0.06
31 24 0.75
32 6 0.19
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.73
Consensus pattern (32 bp):
TTATTGTTTTTGTTACTATTTTCTTGATTTTT
Found at i:27279031 original size:3 final size:3
Alignment explanation
Indices: 27279023--27279063 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
27279013 GGCTTTAATA
27279023 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
27279064 AGCCAATTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:27279618 original size:21 final size:21
Alignment explanation
Indices: 27279593--27279637 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
27279583 AATATTTTAC
27279593 TAAATATTTACGAAGTGTTAT
1 TAAATATTTACGAAGTGTTAT
*
27279614 TAAATATTTATGAAGTGTTAT
1 TAAATATTTACGAAGTGTTAT
27279635 TAA
1 TAA
27279638 GGTTGTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (21 bp):
TAAATATTTACGAAGTGTTAT
Found at i:27285293 original size:20 final size:20
Alignment explanation
Indices: 27285263--27285300 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27285253 TTGAAAGAAA
27285263 AACTCAAAGAGAA-TTGATT
1 AACTCAAAGAGAAGTTGATT
27285282 AACTCGAAAGAGAAGTTGA
1 AACTC-AAAGAGAAGTTGA
27285301 ATAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (20 bp):
AACTCAAAGAGAAGTTGATT
Found at i:27288676 original size:18 final size:19
Alignment explanation
Indices: 27288648--27288683 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
27288638 TTGATGGAAA
27288648 GGATGTTGAATTATACTTT
1 GGATGTTGAATTATACTTT
*
27288667 GGAT-TTGAATTTTACTT
1 GGATGTTGAATTATACTT
27288684 GCCAACCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (19 bp):
GGATGTTGAATTATACTTT
Found at i:27297314 original size:30 final size:29
Alignment explanation
Indices: 27297273--27297329 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
27297263 GCTTTGGGGA
*
27297273 AAAAGTGTAATTATGTAAAAGTTTAGAGGT
1 AAAAGTGTAATTATGCAAAAG-TTAGAGGT
* *
27297303 AAAATTGTAATTTTGCAAAAGTTAGAG
1 AAAAGTGTAATTATGCAAAAGTTAGAG
27297330 TCGAGGGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (29 bp):
AAAAGTGTAATTATGCAAAAGTTAGAGGT
Found at i:27297751 original size:56 final size:50
Alignment explanation
Indices: 27297668--27297909 Score: 195
Period size: 50 Copynumber: 4.7 Consensus size: 50
27297658 GGTGATGAGA
* * * *
27297668 TCCCATGTAAGACTATGTTTGGAACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-TA--AGAGG
* *
27297724 TCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
* * * * * **
27297774 TCCCCTGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
* * * * * *
27297824 TCCCATGTAAGACCATATCTGGGATATGACATTGGCAGTACAAGA-AACA--
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGATAAGAGG
*
27297873 TCCCATGTAATACCATGTCTGGGACATGG-ATTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
27297910 TGTTATTATC
Statistics
Matches: 153, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.01
49 31 0.20
50 77 0.50
51 2 0.01
52 5 0.03
53 4 0.03
55 1 0.01
56 32 0.21
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
Found at i:27299521 original size:12 final size:12
Alignment explanation
Indices: 27299506--27299531 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
27299496 CTAATTGTCT
27299506 ATACTTAGGTAC
1 ATACTTAGGTAC
27299518 ATACTTAGGTAC
1 ATACTTAGGTAC
27299530 AT
1 AT
27299532 TTAATTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (12 bp):
ATACTTAGGTAC
Found at i:27302593 original size:16 final size:17
Alignment explanation
Indices: 27302565--27302597 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
27302555 AAGAACAGGA
27302565 ATAAGTTAGAAAATTAG
1 ATAAGTTAGAAAATTAG
27302582 ATAAGTTA-AAAATTAG
1 ATAAGTTAGAAAATTAG
27302598 CAATCGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (17 bp):
ATAAGTTAGAAAATTAG
Found at i:27307541 original size:30 final size:30
Alignment explanation
Indices: 27307485--27307542 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
27307475 ATTTTCAAGG
* * **
27307485 TAGGTTATTTTTGTAAATAATTAAAAATTT
1 TAGGTCATTTTTATAAATAAAAAAAAATTT
27307515 TAGGTCATTTTTATAAATAAAAAAAAAT
1 TAGGTCATTTTTATAAATAAAAAAAAAT
27307543 CAAAGAACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.43
Consensus pattern (30 bp):
TAGGTCATTTTTATAAATAAAAAAAAATTT
Found at i:27324927 original size:4 final size:4
Alignment explanation
Indices: 27324913--27324946 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
27324903 ATTATACAGC
*
27324913 AATA TATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
27324947 AGAAATCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:27350741 original size:56 final size:51
Alignment explanation
Indices: 27350706--27350892 Score: 204
Period size: 50 Copynumber: 3.8 Consensus size: 51
27350696 CATTGAAATT
27350706 ATGAGAGG-CCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAG
1 ATGAGAGGTCCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAG
* * * *
27350756 ATGAGAGGTCCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAG
** * * * * *
27350806 ATGAGAACT-CCCATGTAAGACCATATCTGGGATATAGCATTGGCA-GTAC
1 ATGAGAGGTCCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAG
* * **
27350855 AGGAAACAT-CCCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGAGGTCCCCATGTAAGACCATGTCTGGGACATGGC
27350893 TTTGCCATGT
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
49 35 0.31
50 75 0.66
51 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (51 bp):
ATGAGAGGTCCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAG
Found at i:27351785 original size:16 final size:16
Alignment explanation
Indices: 27351766--27351817 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
27351756 TTATATTATA
27351766 AAAATATTATTAAATT
1 AAAATATTATTAAATT
27351782 AAAATATTA-TAAATT
1 AAAATATTATTAAATT
27351797 ---ATATTAATTAAAATT
1 AAAATATT-ATT-AAATT
27351812 AAAATA
1 AAAATA
27351818 ATATATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 1 0.03
15 11 0.37
16 9 0.30
18 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATATTATTAAATT
Found at i:27351801 original size:25 final size:26
Alignment explanation
Indices: 27351758--27351810 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
27351748 TTCTTGATTT
27351758 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATT-AATTAAA
*
27351785 ATATTAT-AAATTA-TATTAATTAAA
1 ATATTATAAAAATATTATTAATTAAA
27351809 AT
1 AT
27351811 TAAAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 9 0.36
25 4 0.16
26 5 0.20
27 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATTATAAAAATATTATTAATTAAA
Found at i:27351813 original size:30 final size:27
Alignment explanation
Indices: 27351758--27351822 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 27
27351748 TTCTTGATTT
27351758 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATTAAATTAAA
*
27351785 ATATTATAAATTATATTAATTAAAATTAAA
1 ATATTATAAA-AATATT-ATT-AAATTAAA
*
27351815 ATAATATA
1 ATATTATA
27351823 TTATAGGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 10 0.30
28 5 0.15
29 3 0.09
30 15 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
ATATTATAAAAATATTATTAAATTAAA
Found at i:27352508 original size:108 final size:106
Alignment explanation
Indices: 27352330--27352529 Score: 328
Period size: 108 Copynumber: 1.9 Consensus size: 106
27352320 TGGATTGAGA
*
27352330 TTTAAGAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
*
27352395 CCTCGAATTTCCAAACGCAAAATATTGTCTTACTTCGAAAT
66 CCTCGAATTTCCAAACGCAAAACATTGTCTTACTTCGAAAT
* * *
27352436 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGACACCCAGCACATTAGGGCGCGT
1 TTTAAAAGGATATTTGGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGGCACGT
*
27352501 TTTCTCGAATTTCCAAACGCAAAACATTG
64 TTCCTCGAATTTCCAAACGCAAAACATTG
27352530 CCTTTATTAT
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
106 32 0.37
108 54 0.63
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (106 bp):
TTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
CCTCGAATTTCCAAACGCAAAACATTGTCTTACTTCGAAAT
Found at i:27353221 original size:12 final size:12
Alignment explanation
Indices: 27353204--27353233 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
27353194 ATACACGTAT
27353204 ATGTATATAAAA
1 ATGTATATAAAA
27353216 ATGTATATAAAA
1 ATGTATATAAAA
27353228 AT-TATA
1 ATGTATA
27353234 AAATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
ATGTATATAAAA
Found at i:27354862 original size:41 final size:42
Alignment explanation
Indices: 27354798--27354992 Score: 168
Period size: 41 Copynumber: 4.6 Consensus size: 42
27354788 TCTTCTATCC
27354798 GCTCCACTGCAACTTCAGGGAGATAAGG-CTGGATGCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGGACTGGATGCGATCT
* * * *** *
27354839 GCTCTACTGCAACTTCAGAGAGATAA-GATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGGA-C--TGGATGCGATCT
* *
27354883 GCTCCACTGCAACTT-AGGGAGAT-AGGATTGGATTCTTTTG-TCT
1 GCTCCACTGCAACTTCAGGGAGATAAGGACTGGATGC----GATCT
* *
27354926 GCTCCACTGTAACTTTAGGGAGAT-AGGACTGGATGCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGGACTGGATGCGATCT
* *
27354967 GCTCTACTGCAACTTCAGAGAGATAA
1 GCTCCACTGCAACTTCAGGGAGATAA
27354993 TATCTGTGGT
Statistics
Matches: 121, Mismatches: 21, Indels: 23
0.73 0.13 0.14
Matches are distributed among these distances:
40 7 0.06
41 47 0.39
42 3 0.02
43 25 0.21
44 39 0.32
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (42 bp):
GCTCCACTGCAACTTCAGGGAGATAAGGACTGGATGCGATCT
Found at i:27354897 original size:44 final size:43
Alignment explanation
Indices: 27354745--27355035 Score: 175
Period size: 44 Copynumber: 6.8 Consensus size: 43
27354735 GAATTCATCA
* * * * *
27354745 TTTTAATCCGCTCCACTACAACTTCAGGGAGACAGGAT-TAGC
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *
27354787 TTCTTCTATCCGCTCCACTGCAACTTCAGGGAGATAAG-GC-TGG
1 TT-TT-AATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *** * * *
27354830 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCT-TGG
*
27354874 TTTTAATCCGCTCCACTGCAACTT-AGGGAGATAGGA--TTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
** * * * *
27354914 ATTCTTTTGTCTGCTCCACTGTAACTTTAGGGAGATAGGA-C-TGG
1 --T-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
* *** * * * *
27354958 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAATATCTGTGG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCT-TGG
* * *
27355002 TTTTAATCCGCTCTATTGTAACTTCAGGGAGATA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
27355036 GGATTGGTTT
Statistics
Matches: 189, Mismatches: 46, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
40 3 0.02
41 55 0.29
42 5 0.03
43 33 0.17
44 93 0.49
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (43 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTTGG
Found at i:27354946 original size:128 final size:129
Alignment explanation
Indices: 27354745--27355055 Score: 473
Period size: 128 Copynumber: 2.4 Consensus size: 129
27354735 GAATTCATCA
* * * * * * *
27354745 TTTTAATCCGCTCCACTACAACTTCAGGGAGACAGGATTAGCTTCTTCTATCCGCTCCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
27354810 CTTCAGGGAGATAAGG-CTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
66 CTTCAGGGAGAT-AGGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
*
27354874 TTTTAATCCGCTCCACTGCAACTT-AGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGTAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
* *
27354938 CTTTAGGGAGATAGGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAATATCTGTGG
66 CTTCAGGGAGATAGGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* * * *
27355002 TTTTAATCCGCTCTATTGTAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTG
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTG
27355056 TTTAACTGTA
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
127 3 0.02
128 112 0.67
129 51 0.31
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (129 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGATTCTTTTGTCTGCTCCACTGCAA
CTTCAGGGAGATAGGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
Found at i:27355148 original size:49 final size:49
Alignment explanation
Indices: 27355072--27356154 Score: 621
Period size: 50 Copynumber: 21.7 Consensus size: 49
27355062 TGTAATGTCG
* ** * *
27355072 GGGAAGTAAGATTTGCCGTCATAGCTTCAATCTATTCCATTACACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * ** ** * *
27355122 GGGAA-TAAGATTCTCTGTTGTGGCTTCAATCTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCCATTGCACCGCCT
* * *
27355170 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* ** * **** *
27355220 GGGAAAGTAAGA-TCTGCCGTTGTGGATTCAATCTTTTAATTACAATATCG
1 GGG-AAGTAAGATTC-GCCGTTGTGGCTTCAATCTTTCCATTGCACCGCCT
** * **
27355270 GGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACAGCACCGCCT
1 GGG-AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
** * * ** ** * *
27355320 GGGAGAGTAAGACCCGCCGTTGTGGTTTTAATCTTTTAATTGCAATGTCA
1 GGGA-AGTAAGATTCGCCGTTGTGGCTTCAATCTTTCCATTGCACCGCCT
* * * *
27355370 GGGAAAG-AAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCGCAT
1 GGG-AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* ** ** *
27355420 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTTAATTGCAATGTC-
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * * ** *
27355469 GTGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCCA
1 G-GGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * ** ** * *
27355520 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * * * * *
27355570 GGGAAGCAAGATTCGTCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* ** ** * *
27355620 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * * * ** *
27355670 GGGAAGCAAGATTCACCGTTGTAGCTTCAATTTGTTCCGCTGCATCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * * * * ** * ** * *
27355720 GAGATGTAAGATTCACCATTGTAGCTTCAATCTTTTTAATTGTAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * * *
27355770 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTTCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
** * * ** *
27355820 GTAAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAATTGCAATG-TT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * * * *
27355869 GGAGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCACCT
1 GG-GAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * ** * ** * *
27355920 GGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAATTACAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * **
27355970 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * * ** **** *
27356020 GGGAAGTAAGATTCACCGTTGTGGCCTCAACCTTTTTAATTGCAATATCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCCATTGCACCGCCT
* * *
27356070 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCGTTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCCATTGCACCGCCT
* * * *
27356120 GAGAAGTAAGATTCACCGTTGTGGCCTCAGTCTTT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
27356155 TAATTGCAAA
Statistics
Matches: 752, Mismatches: 252, Indels: 59
0.71 0.24 0.06
Matches are distributed among these distances:
48 14 0.02
49 99 0.13
50 584 0.78
51 55 0.07
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (49 bp):
GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCCATTGCACCGCCT
Found at i:27355281 original size:100 final size:100
Alignment explanation
Indices: 27355056--27356163 Score: 1467
Period size: 100 Copynumber: 11.1 Consensus size: 100
27355046 CTTTTGTCTG
* * * * ** * *
27355056 TTTAACTGTAATGTCGGGGAAGTAAGATTTGCCGTCATAGCTTCAATCTATTCCATTACACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* *
27355121 TGGGAA-TAAGATTCTCTGTTGTGGCTTCAATC-T
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
*
27355154 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
*
27355219 TGGGAAAGTAAGA-TCTGCCGTTGTGGATTCAATC-T
66 TGGG-AAGTAAGATTC-GCCGTTGTGGCTTCAATCTT
* * ** *
27355254 TTTAATTACAATATCGGGGAAAG-AAGATTCGTTGTTGTAGCTTCAATCTATTCCACAGCACCGC
1 TTTAATTGCAATGTCGGGG-AAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGC
** * *
27355318 CTGGGAGAGTAAGACCCGCCGTTGTGGTTTTAATC-T
65 CTGGGA-AGTAAGATTCGCCGTTGTGGCTTCAATCTT
* *
27355354 TTTAATTGCAATGTCAGGGAAAG-AAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCGC
1 TTTAATTGCAATGTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGC
* *
27355418 ATGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTT
65 CTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* * * *
27355454 TTTAATTGCAATGTCGTGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCGCTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* * *
27355519 AGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* * *
27355554 TTTAATTGCAATGTCGGGGAAGCAAGATTCGTCGTTGTAGCTTCAATTTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* *
27355619 AGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* * * * *
27355654 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATTTGTTCCGCTGCATCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* * * * *
27355719 TGAGATGTAAGATTCACCATTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* *
27355754 TTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTTCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
** *
27355819 TGTAAAGTAAGATTCGCCGTTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* * * * *
27355854 TTCAATTGCAATGTTGGAGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTGCACCACC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* *
27355919 TGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* * *
27355954 TTTAATTACAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* * *
27356019 TGGGAAGTAAGATTCACCGTTGTGGCCTCAACCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
* **
27356054 TTTAATTGCAATATCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCGTTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
* * * *
27356119 TGAGAAGTAAGATTCACCGTTGTGGCCTCAGTC-T
66 TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
27356153 TTTAATTGCAA
1 TTTAATTGCAA
27356164 ACTATGGTTT
Statistics
Matches: 905, Mismatches: 96, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
98 60 0.07
99 45 0.05
100 793 0.88
101 7 0.01
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (100 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCC
TGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTT
Found at i:27356520 original size:24 final size:25
Alignment explanation
Indices: 27356460--27356521 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
27356450 TCGGATTGCC
27356460 CCCACTGTAATTTTCAAAGTTCAAT
1 CCCACTGTAATTTTCAAAGTTCAAT
* *
27356485 -CCATTGTGATTTTCAAA--TCTAAT
1 CCCACTGTAATTTTCAAAGTTC-AAT
27356508 CCCACTGTAATTTT
1 CCCACTGTAATTTT
27356522 GGGACTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 2 0.06
23 3 0.10
24 26 0.84
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (25 bp):
CCCACTGTAATTTTCAAAGTTCAAT
Found at i:27360604 original size:108 final size:105
Alignment explanation
Indices: 27360432--27360630 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 105
27360422 TGGATTGAGA
*
27360432 TTTAAGAGAATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
1 TTTAAAAGAATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
* * *
27360497 CCTCGAATTTTCAAATGCAAAATATTGTCTTACTTCGAAAT
66 CCTCGAA-TTCCAAACGCAAAACATTGTCTTACTTCGAAAT
* * * *
27360538 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGACACCCAGCACATTAGGGCGCGT
1 TTTAAAAGAATATTTGGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGGCACGT
*
27360603 TTTCTCGAATTCCAAACGCAAAACATTG
64 TTCCTCGAATTCCAAACGCAAAACATTG
27360631 CCTTTATTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
106 31 0.38
107 16 0.20
108 35 0.43
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (105 bp):
TTTAAAAGAATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACGTTT
CCTCGAATTCCAAACGCAAAACATTGTCTTACTTCGAAAT
Found at i:27361336 original size:11 final size:12
Alignment explanation
Indices: 27361307--27361336 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
27361297 ATACACGTAT
27361307 ATGTATATAAAA
1 ATGTATATAAAA
27361319 ATGTATATAAAA
1 ATGTATATAAAA
27361331 AT-TATA
1 ATGTATA
27361337 AAATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
ATGTATATAAAA
Found at i:27361345 original size:7 final size:7
Alignment explanation
Indices: 27361323--27361357 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
27361313 ATAAAAATGT
27361323 ATATAAAA
1 ATAT-AAA
27361331 ATTATAAA
1 A-TATAAA
27361339 ATATAAA
1 ATATAAA
27361346 ATATAAA
1 ATATAAA
27361353 ATATA
1 ATATA
27361358 TATATAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 18 0.69
8 5 0.19
9 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATATAAA
Found at i:27362158 original size:19 final size:20
Alignment explanation
Indices: 27362129--27362166 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27362119 GCACAAAACA
*
27362129 AAATAAAAAATGAATAAAAT
1 AAATAAAAAATGAACAAAAT
27362149 AAAT-AAAAATGAACAAAA
1 AAATAAAAAATGAACAAAA
27362167 AAGGATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (20 bp):
AAATAAAAAATGAACAAAAT
Found at i:27363245 original size:21 final size:21
Alignment explanation
Indices: 27363198--27363281 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
27363188 TTTGCCAATT
*
27363198 AGGCACTTTATGTGTCTTATCTC
1 AGGCACTTTATGTGTCGTA--TC
27363221 AGGCACTTTATGTGTCGTATC
1 AGGCACTTTATGTGTCGTATC
* ** * *
27363242 AGGCACCTCGTGTGTCGTTTT
1 AGGCACTTTATGTGTCGTATC
27363263 AGGCAC-TTATGTGTCGTAT
1 AGGCACTTTATGTGTCGTAT
27363282 ACTGATCAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 10 0.19
21 24 0.46
23 18 0.35
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (21 bp):
AGGCACTTTATGTGTCGTATC
Found at i:27369732 original size:20 final size:20
Alignment explanation
Indices: 27369699--27369748 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
27369689 TTGTACAGGT
* * *
27369699 TTAATAAATTTATTTAAAAA
1 TTAATTAATATATTGAAAAA
27369719 TTAATTAATATATTGAAAAA
1 TTAATTAATATATTGAAAAA
27369739 TTAATGTAAT
1 TTAAT-TAAT
27369749 TATAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (20 bp):
TTAATTAATATATTGAAAAA
Found at i:27370167 original size:20 final size:20
Alignment explanation
Indices: 27370125--27370167 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
27370115 CTCTTATTAT
**
27370125 ATTTGAAAAATATAAATTTA
1 ATTTGAAAAATATAAATACA
*
27370145 ATTTGAGAAATATAAATACA
1 ATTTGAAAAATATAAATACA
27370165 ATT
1 ATT
27370168 ATGCTCGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (20 bp):
ATTTGAAAAATATAAATACA
Found at i:27376986 original size:19 final size:19
Alignment explanation
Indices: 27376964--27377012 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
27376954 CAGCACAATA
*
27376964 TGCTGATGTGGATGCACTT
1 TGCTGATGTGGACGCACTT
* *
27376983 TGCTAATGTGGACGCGCTT
1 TGCTGATGTGGACGCACTT
*
27377002 TGTTGATGTGG
1 TGCTGATGTGG
27377013 CAAAATCGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.14, C:0.14, G:0.35, T:0.37
Consensus pattern (19 bp):
TGCTGATGTGGACGCACTT
Found at i:27378079 original size:53 final size:53
Alignment explanation
Indices: 27377995--27378098 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
27377985 CCGTATTGGA
* *
27377995 AACATTGTATCGAGAGATGTGTGGGGCGACACCACCAAATAAAGCCAAAATCC
1 AACATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAATCC
*
27378048 AACATTGTACCGAGAGATGTGCGGGGTGACACCACCAAATAAAGCCAAAAT
1 AACATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAAT
27378099 TGGAGGTTGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (53 bp):
AACATTGTACCGAGAGATGTGCGGGGCGACACCACCAAATAAAGCCAAAATCC
Found at i:27378786 original size:15 final size:14
Alignment explanation
Indices: 27378759--27378788 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
27378749 CGGGATCACT
27378759 ACTAATATAATCTA
1 ACTAATATAATCTA
27378773 ACTAATACTAATCTA
1 ACTAATA-TAATCTA
27378788 A
1 A
27378789 TACTAATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
ACTAATATAATCTA
Found at i:27378790 original size:11 final size:11
Alignment explanation
Indices: 27378758--27378795 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
27378748 CCGGGATCAC
*
27378758 TACTAATATAA
1 TACTAATCTAA
27378769 T-CTAA-CTAA
1 TACTAATCTAA
27378778 TACTAATCTAA
1 TACTAATCTAA
27378789 TACTAAT
1 TACTAAT
27378796 AGAATAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 4 0.17
10 8 0.33
11 12 0.50
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (11 bp):
TACTAATCTAA
Found at i:27379515 original size:18 final size:18
Alignment explanation
Indices: 27379488--27379523 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
27379478 TGCCAGGTGC
*
27379488 GTATCCTAACCCTTATAT
1 GTATCATAACCCTTATAT
27379506 GTATCATAACCCTTATAT
1 GTATCATAACCCTTATAT
27379524 ATTTCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (18 bp):
GTATCATAACCCTTATAT
Found at i:27379530 original size:18 final size:18
Alignment explanation
Indices: 27379489--27379530 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
27379479 GCCAGGTGCG
* *
27379489 TATCCTAACCCTTATATG
1 TATCATAACCCTTATATA
27379507 TATCATAACCCTTATATA
1 TATCATAACCCTTATATA
*
27379525 TTTCAT
1 TATCAT
27379531 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (18 bp):
TATCATAACCCTTATATA
Found at i:27380006 original size:62 final size:60
Alignment explanation
Indices: 27379886--27380010 Score: 162
Period size: 62 Copynumber: 2.0 Consensus size: 60
27379876 TATATTTGTA
* * ***
27379886 CAAATTGTTTTTATATTCTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAG
1 CAAATTATTTTTATATTCTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
*
27379946 CAAATTATTTTTATATT-TTGTCTTATTTAATAAAATAGAAGTTCTTTTGAATAAGGTAATAG
1 CAAATTATTTTTATATTCTT-TC--ATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
27380008 CAA
1 CAA
27380011 TAATGCAACA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
59 2 0.04
60 18 0.32
62 36 0.64
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.47
Consensus pattern (60 bp):
CAAATTATTTTTATATTCTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
Found at i:27383248 original size:126 final size:126
Alignment explanation
Indices: 27383023--27383543 Score: 681
Period size: 126 Copynumber: 4.1 Consensus size: 126
27383013 GGCCAAACAG
* * * * * *
27383023 GAACTACTGTAGAAAAAGAACGTCTATGTGGGAGCCTTTTTCAGTAATTTTGCTAACAGTGCATA
1 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * ** * * * *
27383088 TTGCTTGAAGTATTTTTGACACTATTTTTTCAGAACTGCCTTCTCAAAATTATTTTTAT-AA
66 CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTT-TCAA
* *
27383149 GAACTACTGTAGAAAAAGAGCGT-TCACGTGGGAGTTTTTTTCAGTAATTTTGCTGATAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCT-ACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCAT
* * * *
27383213 CCTGCTTGAAGCTTTTTTGACATTATTTTTTCAGAACCGTTTTCTCAAAATTATTTTTTCAA
65 CCTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * *
27383275 GAACTACTGTAGAAAAAGAGCAT-TCACGTAGGAGCTTTTTTCATTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCT-ACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCAT
* *
27383339 CTTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAG
65 CCTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * *
27383401 GAACTACTATAGAAAAATAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATGGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
* * * *
27383466 CTACTTAAAGCGTTTTTGACATTATCTTTTCAGAACTGTCTTCTCAAAATTAATTTTTC-T
66 CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
*
27383526 GAAACTACTATAGAAAAA
1 G-AACTACTGTAGAAAAA
27383544 AATCTTTCTT
Statistics
Matches: 354, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
125 3 0.01
126 350 0.99
127 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
CTGCTTAAAGCGTTTTTGACATTATCTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
Found at i:27383662 original size:34 final size:33
Alignment explanation
Indices: 27383628--27383753 Score: 128
Period size: 34 Copynumber: 3.7 Consensus size: 33
27383618 CAAAAATTAT
* * *
27383628 TTTAAAAAACTAAACCCTAATTTAATTTATTTA
1 TTTAAAAACCTAAAACCTAATTTAATTAATTTA
* *
27383661 TTTAAAACCCCTAAAATCTAATTTAATTAATTTA
1 TTTAAAA-ACCTAAAACCTAATTTAATTAATTTA
*
27383695 TTTAAAACCCTTAAAACCTAATTTAATTAATTT-
1 TTTAAAAACC-TAAAACCTAATTTAATTAATTTA
* * *
27383728 TTAGAAAAATTCTAAACCCTAATTTA
1 TT-TAAAAA-CCTAAAACCTAATTTA
27383754 TTTTTTAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
33 12 0.15
34 66 0.84
35 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.40
Consensus pattern (33 bp):
TTTAAAAACCTAAAACCTAATTTAATTAATTTA
Found at i:27393276 original size:51 final size:51
Alignment explanation
Indices: 27393153--27393392 Score: 236
Period size: 51 Copynumber: 4.7 Consensus size: 51
27393143 GTGAAAGTGA
* * * * **
27393153 TGATCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGA-A-TGAA
1 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGATAGT-TT
* * * * * * * *
27393203 AGGTCTCATGTGTAGTACTATGTGCAGGCTACTATGCGCACCAGATAGTTT
1 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGATAGTTT
* * * *
27393254 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATA-TTAA
1 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGATAGTT-T
* *
27393305 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TT
1 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGATAGTTT
* *
27393355 TGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTG
1 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTG
27393393 TATTGAATGA
Statistics
Matches: 155, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
50 73 0.47
51 81 0.52
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (51 bp):
TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGATAGTTT
Found at i:27393395 original size:101 final size:101
Alignment explanation
Indices: 27393153--27393395 Score: 335
Period size: 101 Copynumber: 2.4 Consensus size: 101
27393143 GTGAAAGTGA
* * * *
27393153 TGATCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGAATGAAAGGTCTCATGTGTAG
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAG
* * *
27393218 TACTATGTGCAGGCTACTATGCGCACCAGATAGTTT
66 TACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* * * * *
27393254 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATATTAATGGTCACGTGTGTA
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGA-ATGAAAGGTCACATGTGTA
* *
27393319 GTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TT
65 GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
*
27393355 TGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTAT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTAT
27393396 TGAATGATAA
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
101 80 0.65
102 44 0.35
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAG
TACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
Found at i:27393424 original size:101 final size:100
Alignment explanation
Indices: 27393153--27393431 Score: 296
Period size: 101 Copynumber: 2.8 Consensus size: 100
27393143 GTGAAAGTGA
* * * * * *
27393153 TGATCACATGTGCAGTACTATGTGAAGGCTACTACGTGTACCGGAATGA-AAGGTCTCATGTGTA
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGT-TCACGTGTG
* * *
27393217 GTACTATGTGCAGGCTACTATGCGCACCAGATAGTTT
64 GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* * * *
27393254 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGAT-ATTAATGGTCACGTGTGT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA-TAATGTTCACGTGTG-
* *
27393318 AGTACTATGTGCAGGCTACTACGTGAACCGGAAAG-TT
64 -GTACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
* *
27393355 TGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATTGAATGATAATAGTTACACAG-GT
1 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT-GTT-CAC-GTGT
*
27393419 GGTACTATATGCA
63 GGTACTATGTGCA
27393432 AACCACCGAA
Statistics
Matches: 148, Mismatches: 22, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
99 1 0.01
100 10 0.07
101 98 0.66
102 32 0.22
103 6 0.04
104 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (100 bp):
TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGTTCACGTGTGGT
ACTATGTGCAGGCTACTACGCGAACCAGAAAGTTT
Found at i:27395986 original size:64 final size:64
Alignment explanation
Indices: 27395885--27396004 Score: 195
Period size: 64 Copynumber: 1.9 Consensus size: 64
27395875 ACGAGCATCC
* * * *
27395885 TGATCGGTATTGATCCTGCATGTGTTGCGGATATACCGCAGCTCTTTGTGAGCGTCTTGTTATA
1 TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCTTGTTATA
*
27395949 TGATCGGTATTGATCCTGCTTATATTGCGGACATACCGCAGCTCTTTATGAGCGTC
1 TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTC
27396005 CCAATATAGG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (64 bp):
TGATCGGTATTGATCCTGCATATATTGCGGACATACCGCAGCTCTTTATGAGCGTCTTGTTATA
Found at i:27401350 original size:21 final size:21
Alignment explanation
Indices: 27401305--27401422 Score: 71
Period size: 21 Copynumber: 5.6 Consensus size: 21
27401295 TAGATCGAGT
*
27401305 TTTATGGTTTAAGGATTATGG
1 TTTATGGTTTAAGGATTAGGG
*
27401326 TTTATGGTTTAAGGGTT-GGG
1 TTTATGGTTTAAGGATTAGGG
* *
27401346 ATTTAGGGGTT-AGGATTAGGGG
1 -TTTATGGTTTAAGGATTA-GGG
* * * *
27401368 TTTA-GGTTTTATGGTTTATGA
1 TTTATGG-TTTAAGGATTAGGG
* * *
27401389 TTTAGGGTTTAGGAGATAAGGG
1 TTTATGGTTTAAG-GATTAGGG
*
27401411 TTTAGGGTTTAA
1 TTTATGGTTTAA
27401423 TTAGTGTTTT
Statistics
Matches: 74, Mismatches: 16, Indels: 13
0.72 0.16 0.13
Matches are distributed among these distances:
20 9 0.12
21 40 0.54
22 25 0.34
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (21 bp):
TTTATGGTTTAAGGATTAGGG
Found at i:27401396 original size:28 final size:28
Alignment explanation
Indices: 27401305--27401402 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 28
27401295 TAGATCGAGT
* *
27401305 TTTATGGTTTAAGGA-TTATGGTTTATGG
1 TTTAGGGTTT-AGGATTTATGGTTTATGA
* * * *
27401333 TTTAAGGG-TTGGGATTTAGGGGTTAGGA
1 TTT-AGGGTTTAGGATTTATGGTTTATGA
*
27401361 -TTAGGGGTTTAGGTTTTATGGTTTATGA
1 TTTA-GGGTTTAGGATTTATGGTTTATGA
27401389 TTTAGGGTTTAGGA
1 TTTAGGGTTTAGGA
27401403 GATAAGGGTT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 38 0.72
29 6 0.11
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (28 bp):
TTTAGGGTTTAGGATTTATGGTTTATGA
Found at i:27401400 original size:7 final size:7
Alignment explanation
Indices: 27401305--27401421 Score: 60
Period size: 7 Copynumber: 16.6 Consensus size: 7
27401295 TAGATCGAGT
*
27401305 TTTATGG
1 TTTAGGG
*
27401312 TTTAAGG
1 TTTAGGG
* *
27401319 ATTATGG
1 TTTAGGG
*
27401326 TTTATGG
1 TTTAGGG
27401333 TTTAAGGG
1 TTT-AGGG
27401341 -TT-GGG
1 TTTAGGG
27401346 ATTTAGGG
1 -TTTAGGG
*
27401354 GTTA-GG
1 TTTAGGG
*
27401360 ATTAGGGG
1 TTTA-GGG
*
27401368 TTTAGGT
1 TTTAGGG
*
27401375 TTTATGG
1 TTTAGGG
* *
27401382 TTTATGA
1 TTTAGGG
27401389 TTTAGGG
1 TTTAGGG
27401396 TTTAGGAG
1 TTTAGG-G
* *
27401404 ATAAGGG
1 TTTAGGG
27401411 TTTAGGG
1 TTTAGGG
27401418 TTTA
1 TTTA
27401422 ATTAGTGTTT
Statistics
Matches: 85, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
5 3 0.04
6 5 0.06
7 61 0.72
8 16 0.19
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:27401577 original size:15 final size:14
Alignment explanation
Indices: 27401547--27401588 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
27401537 AGTTACTATT
27401547 TTAAGGTTTATGGA
1 TTAAGGTTTATGGA
27401561 TTAAGAGTTTA-GAGA
1 TTAAG-GTTTATG-GA
*
27401576 TTATGGTTTATGG
1 TTAAGGTTTATGG
27401589 TTTATGGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (14 bp):
TTAAGGTTTATGGA
Found at i:27401593 original size:14 final size:14
Alignment explanation
Indices: 27401580--27401656 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
27401570 TAGAGATTAT
* *
27401580 GGTTTATGGTTTAT
1 GGTTTAAGGTTTAG
* * *
27401594 GGTGTAAGGGTTGG
1 GGTTTAAGGTTTAG
27401608 GGTTTAAGGTTTAG
1 GGTTTAAGGTTTAG
* *
27401622 GGGTTAAGGGTTAAG
1 GGTTTAA-GGTTTAG
* *
27401637 AGTTTAGGGTTTAG
1 GGTTTAAGGTTTAG
27401651 GGTTTA
1 GGTTTA
27401657 TGTTTTATAA
Statistics
Matches: 47, Mismatches: 15, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
14 37 0.79
15 10 0.21
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.40
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Found at i:27401620 original size:28 final size:28
Alignment explanation
Indices: 27401580--27401652 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
27401570 TAGAGATTAT
* *
27401580 GGTTTATGGTTTA-TGGTGTAAGGGTTGG
1 GGTTTAAGGTTTAGGGGT-TAAGGGTTGG
*
27401608 GGTTTAAGGTTTAGGGGTTAAGGGTTAAG
1 GGTTTAAGGTTTAGGGGTTAAGGGTT-GG
* *
27401637 AGTTTAGGGTTTAGGG
1 GGTTTAAGGTTTAGGG
27401653 TTTATGTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 20 0.53
29 18 0.47
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.38
Consensus pattern (28 bp):
GGTTTAAGGTTTAGGGGTTAAGGGTTGG
Found at i:27401625 original size:21 final size:21
Alignment explanation
Indices: 27401518--27401656 Score: 75
Period size: 22 Copynumber: 6.5 Consensus size: 21
27401508 TCATTATAAT
*
27401518 TTAGGGTTTAAGGTTTAGGAG
1 TTAGGGTTTAAGGTTTAGGGG
*** * *
27401539 TTACTATTTTAAGGTTTATGGA
1 TTA-GGGTTTAAGGTTTAGGGG
* * * *
27401561 TTAAGAGTTT-AGAGATTATGGT
1 TT-AGGGTTTAAG-GTTTAGGGG
* * * *
27401583 TTATGGTTTATGGTGTAAGGG
1 TTAGGGTTTAAGGTTTAGGGG
*
27401604 TTGGGGTTTAAGGTTTAGGGG
1 TTAGGGTTTAAGGTTTAGGGG
*
27401625 TTAAGGG-TTAAGAGTTTAGGGT
1 TT-AGGGTTTAAG-GTTTAGGGG
27401647 TTAGGGTTTA
1 TTAGGGTTTA
27401657 TGTTTTATAA
Statistics
Matches: 87, Mismatches: 24, Indels: 13
0.70 0.19 0.10
Matches are distributed among these distances:
21 42 0.48
22 44 0.51
23 1 0.01
ACGTcount: A:0.24, C:0.01, G:0.34, T:0.42
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTTAGGGG
Found at i:27402075 original size:19 final size:19
Alignment explanation
Indices: 27402048--27402096 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
27402038 AAATTATAAC
* *
27402048 AAATGAAAATAAAATGCAA
1 AAATAAAAATAAAATACAA
27402067 AAATAAAAATAAAATACAA
1 AAATAAAAATAAAATACAA
27402086 AAACTAAAAAT
1 AAA-TAAAAAT
27402097 TATAATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.16
Consensus pattern (19 bp):
AAATAAAAATAAAATACAA
Found at i:27404730 original size:19 final size:19
Alignment explanation
Indices: 27404703--27404779 Score: 100
Period size: 19 Copynumber: 4.0 Consensus size: 19
27404693 ATTTTTGAGG
27404703 ATATACAATCTTAGATATA
1 ATATACAATCTTAGATATA
* *
27404722 ATATGCAATCTTAGATATG
1 ATATACAATCTTAGATATA
* *
27404741 ATATATAATCTTAGATATG
1 ATATACAATCTTAGATATA
*
27404760 ATATGCAATCTTAGAATATA
1 ATATACAATCTTAG-ATATA
27404780 TAATTTTGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 46 0.92
20 4 0.08
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (19 bp):
ATATACAATCTTAGATATA
Found at i:27404744 original size:38 final size:37
Alignment explanation
Indices: 27404702--27404781 Score: 126
Period size: 38 Copynumber: 2.2 Consensus size: 37
27404692 AATTTTTGAG
27404702 GATATACAATCTTAGATATAATATGCAATCTTAGATAT
1 GATATACAATCTTAGATATAATATGCAATCTTAGA-AT
* *
27404740 GATATATAATCTTAGATATGATATGCAATCTTAGAAT
1 GATATACAATCTTAGATATAATATGCAATCTTAGAAT
27404777 -ATATA
1 GATATA
27404782 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
36 5 0.12
37 2 0.05
38 33 0.82
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (37 bp):
GATATACAATCTTAGATATAATATGCAATCTTAGAAT
Found at i:27406239 original size:98 final size:98
Alignment explanation
Indices: 27406106--27406302 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
27406096 TTTAAAATAA
* * *
27406106 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
27406171 TTAAATCTTGGATACGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
27406204 TAAAGAAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
27406269 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
27406302 T
1 T
27406303 TTTATTGTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGAAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:27407789 original size:86 final size:86
Alignment explanation
Indices: 27407644--27407867 Score: 256
Period size: 86 Copynumber: 2.6 Consensus size: 86
27407634 ATTTGGTACT
* * ** * *
27407644 TTTAGCGGCGTTTGTAATAAAAGTGCCGTTAAAGGTTATGTTCTTTAGCGGCGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
*
27407709 ACATTGCTAAATG-TTATGTTC
66 ACATCGCTAAA-GATTATGTTC
*
27407730 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGTGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
* *
27407795 GCGTCGCTAAAGATTATGTTC
66 ACATCGCTAAAGATTATGTTC
* * * * * *
27407816 TTTAATGGCATTTGTGGGT-ATAGTGTTA-CTAAAGGTCATGCTCTATAGCGGC
1 TTTAGTGGCGTTTGT-GATAAAAGTG-TAGCTAAAGGTTATGCTCTTTAGCGGC
27407868 ATTTTTGTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
85 1 0.01
86 113 0.96
87 4 0.03
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (86 bp):
TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTCTTTAGCGGCGTTTGTGATAAAA
ACATCGCTAAAGATTATGTTC
Found at i:27407831 original size:43 final size:43
Alignment explanation
Indices: 27407644--27407819 Score: 226
Period size: 43 Copynumber: 4.1 Consensus size: 43
27407634 ATTTGGTACT
* * * *
27407644 TTTAGCGGCGTTTGTAATAAAAGTGCCGTTAAAGGTTATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* * * *
27407687 TTTAGCGGCGTTTGTGATAAAAACATTGCTAAATGTTATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* * * *
27407730 TTTAGTGGCGTTTGTGATAAAAGTGTAGCTAAAGGTTATGCTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
* *
27407773 TTTAGCGGTGTTTGTGATAAAAGCGTCGCTAAAGATTATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
27407816 TTTA
1 TTTA
27407820 ATGGCATTTG
Statistics
Matches: 112, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 112 1.00
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTTATGTTC
Found at i:27408107 original size:32 final size:32
Alignment explanation
Indices: 27408069--27408131 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
27408059 ATTAATCAAT
*
27408069 ATGAGTTATCAAATT-AAATTAATTAATTTATC
1 ATGAGTTATCAAATTCAAA-TAATCAATTTATC
**
27408101 ATGAGTTATTGAATTCAAATAATCAATTTAT
1 ATGAGTTATCAAATTCAAATAATCAATTTAT
27408132 AAGTTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 24 0.89
33 3 0.11
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (32 bp):
ATGAGTTATCAAATTCAAATAATCAATTTATC
Found at i:27410446 original size:14 final size:13
Alignment explanation
Indices: 27410427--27410456 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
27410417 TCAATTTTGC
27410427 ATCTAGTTAAATTA
1 ATCTAGTTAAA-TA
27410441 ATCTAGTTAAATA
1 ATCTAGTTAAATA
27410454 ATC
1 ATC
27410457 ATCACTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (13 bp):
ATCTAGTTAAATA
Found at i:27415480 original size:29 final size:29
Alignment explanation
Indices: 27415446--27415518 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
27415436 TCATCGATGA
*
27415446 ATGAAAATGGATGGATTT-AACCATCGACT
1 ATGAAAAGGGATGG-TTTCAACCATCGACT
* * *
27415475 ATGAAAAGGGATAGTTTCAACTATCGATT
1 ATGAAAAGGGATGGTTTCAACCATCGACT
27415504 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
27415519 AACGGCCATC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTCAACCATCGACT
Found at i:27415583 original size:29 final size:28
Alignment explanation
Indices: 27415551--27415640 Score: 108
Period size: 29 Copynumber: 3.1 Consensus size: 28
27415541 AGTTTTGACA
27415551 ATCAAATATAAAAATGGATGGTGACGACC
1 ATCAAATAT-AAAATGGATGGTGACGACC
* *
27415580 ATCAACTATGAAAAGGGATGGTGACGACC
1 ATCAAATAT-AAAATGGATGGTGACGACC
* * *
27415609 ATCGAATATGAAATGGGATGGTTACGACC
1 ATCAAATATAAAAT-GGATGGTGACGACC
27415638 ATC
1 ATC
27415641 CTTAGCACAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 3 0.06
29 49 0.94
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (28 bp):
ATCAAATATAAAATGGATGGTGACGACC
Found at i:27418696 original size:87 final size:87
Alignment explanation
Indices: 27418533--27418759 Score: 314
Period size: 87 Copynumber: 2.6 Consensus size: 87
27418523 ACGGTGTATC
* ** * * *
27418533 GACGATCATCGATTAATGAAAAGGGATGGAT-TTGACCATTGACTATGAAAAGGGATAGTTTTGA
1 GACGACCATCGATTAATGAAAAGGGATGG-TGACGACCATCGA-TATGAAAAGAGATAGTTTCGA
* *
27418597 CTATCGATTATGAAAAGGGATGGT
64 CTATCAAATATGAAAAGGGATGGT
*
27418621 GACGACCATCAATT-ATGAAAAGGGATGGTGACGACCATCGTATATGAAAAGAGATAGTTTCGAC
1 GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCG-ATATGAAAAGAGATAGTTTCGAC
27418685 TATCAAATATGAAAAGGGATGGT
65 TATCAAATATGAAAAGGGATGGT
*
27418708 GACGACCATCGATTAATGAAAAGGGATGGTGACGGCCATCGAATATGAAAAG
1 GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCG-ATATGAAAAG
27418760 GGATGGTTAC
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
86 1 0.01
87 75 0.60
88 48 0.39
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (87 bp):
GACGACCATCGATTAATGAAAAGGGATGGTGACGACCATCGATATGAAAAGAGATAGTTTCGACT
ATCAAATATGAAAAGGGATGGT
Found at i:27418713 original size:29 final size:29
Alignment explanation
Indices: 27418533--27418777 Score: 242
Period size: 29 Copynumber: 8.4 Consensus size: 29
27418523 ACGGTGTATC
* *
27418533 GACGATCATCGATTAATGAAAAGGGATGGAT
1 GACGACCATCGAAT-ATGAAAAGGGATGG-T
** * * *
27418564 -TTGACCATTGACTATGAAAAGGGATAGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*** * *
27418592 TTTGACTATCGATTATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
27418621 GACGACCATC-AATTATGAAAAGGGATGGT
1 GACGACCATCGAA-TATGAAAAGGGATGGT
* * *
27418650 GACGACCATCGTATATGAAAAGAGATAGT
1 GACGACCATCGAATATGAAAAGGGATGGT
** * *
27418679 TTCGACTATCAAATATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*
27418708 GACGACCATCGATTAATGAAAAGGGATGGT
1 GACGACCATCGAAT-ATGAAAAGGGATGGT
*
27418738 GACGGCCATCGAATATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*
27418767 TACGACCATCG
1 GACGACCATCG
27418778 TTAGCACACT
Statistics
Matches: 176, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.01
29 138 0.78
30 36 0.20
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
GACGACCATCGAATATGAAAAGGGATGGT
Found at i:27419804 original size:13 final size:13
Alignment explanation
Indices: 27419786--27419816 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
27419776 GCACACAAGG
27419786 GTGTGGCTTGGCC
1 GTGTGGCTTGGCC
*
27419799 GTGTGGCTTGGCT
1 GTGTGGCTTGGCC
27419812 GTGTG
1 GTGTG
27419817 ACCTAAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.35
Consensus pattern (13 bp):
GTGTGGCTTGGCC
Found at i:27423842 original size:17 final size:18
Alignment explanation
Indices: 27423809--27423842 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
27423799 TAAAATTAAC
27423809 TAAATTAATTTTGTCAAT
1 TAAATTAATTTTGTCAAT
*
27423827 TAAATT-ATTTTTTCAA
1 TAAATTAATTTTGTCAA
27423843 CCAAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (18 bp):
TAAATTAATTTTGTCAAT
Found at i:27426974 original size:18 final size:18
Alignment explanation
Indices: 27426951--27426985 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27426941 TAGTTATCAA
27426951 TGCTACCTCTACCTCTAC
1 TGCTACCTCTACCTCTAC
* *
27426969 TGCTACGTCTAGCTCTA
1 TGCTACCTCTACCTCTA
27426986 TATGAATTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.37, G:0.11, T:0.34
Consensus pattern (18 bp):
TGCTACCTCTACCTCTAC
Found at i:27427851 original size:18 final size:18
Alignment explanation
Indices: 27427830--27427870 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
27427820 GATGAAAATA
*
27427830 TTAATTAAACTAATTAAC
1 TTAATTAAACTAACTAAC
*
27427848 TTAATTAACCTAACTAAC
1 TTAATTAAACTAACTAAC
*
27427866 CTAAT
1 TTAAT
27427871 GGAATTTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (18 bp):
TTAATTAAACTAACTAAC
Found at i:27431454 original size:14 final size:14
Alignment explanation
Indices: 27431435--27431467 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
27431425 TATGTTATGG
27431435 CAAAGTTACTACGA
1 CAAAGTTACTACGA
27431449 CAAAGTTACTACGA
1 CAAAGTTACTACGA
27431463 CAAAG
1 CAAAG
27431468 AATAAGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.18
Consensus pattern (14 bp):
CAAAGTTACTACGA
Found at i:27436265 original size:15 final size:15
Alignment explanation
Indices: 27436245--27436274 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27436235 TTTATATGTT
*
27436245 TATTCTTTTTTTTTC
1 TATTCTTTCTTTTTC
27436260 TATTCTTTCTTTTTC
1 TATTCTTTCTTTTTC
27436275 CCCATTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTCTTTCTTTTTC
Found at i:27447351 original size:836 final size:836
Alignment explanation
Indices: 27445739--27447413 Score: 3323
Period size: 836 Copynumber: 2.0 Consensus size: 836
27445729 AACTTGCTAA
27445739 AATTATGGCCAACCACCCATGGAAGATGCTTGCAAAGATGGAAACTCCTATTTTTAGCAAACTAT
1 AATTATGGCCAACCACCCATGGAAGATGCTTGCAAAGATGGAAACTCCTATTTTTAGCAAACTAT
27445804 CTCTCTCTCATGACCTGTAAATAAGACCCTTTCATTCCTTCATTCATCATCTTTCAAGCATCCAT
66 CTCTCTCTCATGACCTGTAAATAAGACCCTTTCATTCCTTCATTCATCATCTTTCAAGCATCCAT
*
27445869 CAAACATCATTCTCTCTTTTTCTCTTAGCCTTTTCCATTCCCATGCCTAGCATCATCTCTTCATA
131 CAAACATCATTCTCTCTTTTTCTCTTAGCCTTTTCCATTCCCATGCCTAGCATAATCTCTTCATA
27445934 GAGATTTTAGCAATTAAGCCTCTCAAAGAACCCTTGCTTGGCCACCTTGGAGAACCATCAGTAAA
196 GAGATTTTAGCAATTAAGCCTCTCAAAGAACCCTTGCTTGGCCACCTTGGAGAACCATCAGTAAA
27445999 GAAGTAAAACAAAGGAACAAATGAGTCTCGTCAGTCAGAGTCTTGGGTGACAACCACTCTAAATT
261 GAAGTAAAACAAAGGAACAAATGAGTCTCGTCAGTCAGAGTCTTGGGTGACAACCACTCTAAATT
27446064 GGGTTTAATCTTTCTTTTCTTTAACTTAATACAAAGATGTTGCTATATGTTCTTTGTTCTTGTTT
326 GGGTTTAATCTTTCTTTTCTTTAACTTAATACAAAGATGTTGCTATATGTTCTTTGTTCTTGTTT
27446129 ACAACAATGTTAGCTTAATTTTATTTAAGCTAGGATGATTGCTTTGATTAAATAATATTTATTTG
391 ACAACAATGTTAGCTTAATTTTATTTAAGCTAGGATGATTGCTTTGATTAAATAATATTTATTTG
27446194 ATTAATGCTTATAACGTTTGTGCCTCAATCGATCATGTTGTCAATTAAAATCAAGTCTGTATTTC
456 ATTAATGCTTATAACGTTTGTGCCTCAATCGATCATGTTGTCAATTAAAATCAAGTCTGTATTTC
*
27446259 GTTCATACGTGATTGAAATGCACTTGAATTAGCTGAGTGATCCTAACAAGAAGACGGCTACTGGA
521 GTTCATACGTGATTGAAATGCACTTGAATTAGCTGAGTGATCCTAACAAGAAGACGGCTAATGGA
27446324 CACATAATTGAAATGTGCATGCTCAATTTAGATCTTAACATGATTAAATTGTAGGTTGCATAACA
586 CACATAATTGAAATGTGCATGCTCAATTTAGATCTTAACATGATTAAATTGTAGGTTGCATAACA
27446389 ACACTAACCAATCTCTGTTATCTGCATAGGTTTTAGATTTGTGTGATTAAATTGTTTCAAACCTA
651 ACACTAACCAATCTCTGTTATCTGCATAGGTTTTAGATTTGTGTGATTAAATTGTTTCAAACCTA
27446454 ACATGTCCTTGTTACCTCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCATTAAATTGCA
716 ACATGTCCTTGTTACCTCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCATTAAATTGCA
27446519 TATTTCGAAAGGACCTAATGTGGTTTCCAAACTCATGAAAGATCGAGTTGCCATGG
781 TATTTCGAAAGGACCTAATGTGGTTTCCAAACTCATGAAAGATCGAGTTGCCATGG
27446575 AATTATGGCCAACCACCCATGGAAGATGCTTGCAAAGATGGAAACTCCTATTTTTAGCAAACTAT
1 AATTATGGCCAACCACCCATGGAAGATGCTTGCAAAGATGGAAACTCCTATTTTTAGCAAACTAT
27446640 CTCTCTCTCATGACCTGTAAATAAGACCCTTTCATTCCTTCATTCATCATCTTTCAAGCATCCAT
66 CTCTCTCTCATGACCTGTAAATAAGACCCTTTCATTCCTTCATTCATCATCTTTCAAGCATCCAT
*
27446705 CAAGCATCATTCTCTCTTTTTCTCTTAGCCTTTTCCATTCCCATGCCTAGCATAATCTCTTCATA
131 CAAACATCATTCTCTCTTTTTCTCTTAGCCTTTTCCATTCCCATGCCTAGCATAATCTCTTCATA
27446770 GAGATTTTAGCAATTAAGCCTCTCAAAGAACCCTTGCTTGGCCACCTTGGAGAACCATCAGTAAA
196 GAGATTTTAGCAATTAAGCCTCTCAAAGAACCCTTGCTTGGCCACCTTGGAGAACCATCAGTAAA
27446835 GAAGTAAAACAAAGGAACAAATGAGTCTCGTCAGTCAGAGTCTTGGGTGACAACCACTCTAAATT
261 GAAGTAAAACAAAGGAACAAATGAGTCTCGTCAGTCAGAGTCTTGGGTGACAACCACTCTAAATT
27446900 GGGTTTAATCTTTCTTTTCTTTAACTTAATACAAAGATGTTGCTATATGTTCTTTGTTCTTGTTT
326 GGGTTTAATCTTTCTTTTCTTTAACTTAATACAAAGATGTTGCTATATGTTCTTTGTTCTTGTTT
27446965 ACAACAATGTTAGCTTAATTTTATTTAAGCTAGGATGATTGCTTTGATTAAATAATATTTATTTG
391 ACAACAATGTTAGCTTAATTTTATTTAAGCTAGGATGATTGCTTTGATTAAATAATATTTATTTG
27447030 ATTAATGCTTATAACGTTTGTGCCTCAATCGATCATGTTGTCAATTAAAATCAAGTCTGTATTTC
456 ATTAATGCTTATAACGTTTGTGCCTCAATCGATCATGTTGTCAATTAAAATCAAGTCTGTATTTC
27447095 GTTCATACGTGATTGAAATGCACTTGAATTAGCTGAGTGATCCTAACAAGAAGACGGCTAATGGA
521 GTTCATACGTGATTGAAATGCACTTGAATTAGCTGAGTGATCCTAACAAGAAGACGGCTAATGGA
27447160 CACATAATTGAAATGTGCATGCTCAATTTAGATCTTAACATGATTAAATTGTAGGTTGCATAACA
586 CACATAATTGAAATGTGCATGCTCAATTTAGATCTTAACATGATTAAATTGTAGGTTGCATAACA
27447225 ACACTAACCAATCTCTGTTATCTGCATAGGTTTTAGATTTGTGTGATTAAATTGTTTCAAACCTA
651 ACACTAACCAATCTCTGTTATCTGCATAGGTTTTAGATTTGTGTGATTAAATTGTTTCAAACCTA
27447290 ACATGTCCTTGTTACCTCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCATTAAATTGCA
716 ACATGTCCTTGTTACCTCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCATTAAATTGCA
27447355 TATTTCGAAAGGACCTAATGTGGTTTCCAAACTCATGAAAGATCGAGTTGCCATGG
781 TATTTCGAAAGGACCTAATGTGGTTTCCAAACTCATGAAAGATCGAGTTGCCATGG
27447411 AAT
1 AAT
27447414 GTTTTTCCGA
Statistics
Matches: 836, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
836 836 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (836 bp):
AATTATGGCCAACCACCCATGGAAGATGCTTGCAAAGATGGAAACTCCTATTTTTAGCAAACTAT
CTCTCTCTCATGACCTGTAAATAAGACCCTTTCATTCCTTCATTCATCATCTTTCAAGCATCCAT
CAAACATCATTCTCTCTTTTTCTCTTAGCCTTTTCCATTCCCATGCCTAGCATAATCTCTTCATA
GAGATTTTAGCAATTAAGCCTCTCAAAGAACCCTTGCTTGGCCACCTTGGAGAACCATCAGTAAA
GAAGTAAAACAAAGGAACAAATGAGTCTCGTCAGTCAGAGTCTTGGGTGACAACCACTCTAAATT
GGGTTTAATCTTTCTTTTCTTTAACTTAATACAAAGATGTTGCTATATGTTCTTTGTTCTTGTTT
ACAACAATGTTAGCTTAATTTTATTTAAGCTAGGATGATTGCTTTGATTAAATAATATTTATTTG
ATTAATGCTTATAACGTTTGTGCCTCAATCGATCATGTTGTCAATTAAAATCAAGTCTGTATTTC
GTTCATACGTGATTGAAATGCACTTGAATTAGCTGAGTGATCCTAACAAGAAGACGGCTAATGGA
CACATAATTGAAATGTGCATGCTCAATTTAGATCTTAACATGATTAAATTGTAGGTTGCATAACA
ACACTAACCAATCTCTGTTATCTGCATAGGTTTTAGATTTGTGTGATTAAATTGTTTCAAACCTA
ACATGTCCTTGTTACCTCACACGAATGCTAAGAAACCCTTAGTAAATAAGGATCATTAAATTGCA
TATTTCGAAAGGACCTAATGTGGTTTCCAAACTCATGAAAGATCGAGTTGCCATGG
Found at i:27456643 original size:130 final size:130
Alignment explanation
Indices: 27456410--27456673 Score: 465
Period size: 130 Copynumber: 2.0 Consensus size: 130
27456400 TTAGAGTTAG
*
27456410 AGAATAAAGATCATTGGGCTTTGAAGCAATTGAACTTTGATCTTAAGAAAGTGGGTCAGAGAAGG
1 AGAATAAAGATCATTGGACTTTGAAGCAATTGAACTTTGATCTTAAGAAAGTGGGTCAGAGAAGG
* *
27456475 ATGTTACAACTTGATGAGTTGGAAGAACTGAGGTTGTTTTCCAATGAGAATGCGAAAATGTGTAA
66 ATGTTACAACTTGATGAGTTGGAAGAACTGAGGTTGTTTTCCAATGAGAATGCCAAAATGAGTAA
* *
27456540 AGAATAAAGCTCATTGGACTTTGAAGCAATTGAACTTTGATCTTAAGCAAGTGGGTCAGAGAAGG
1 AGAATAAAGATCATTGGACTTTGAAGCAATTGAACTTTGATCTTAAGAAAGTGGGTCAGAGAAGG
* *
27456605 ATGTTACAACTTGATGAGTTGGAAGAGCTGAGGTTGTTTTCCTATGAGAATGCCAAAATGAGTAA
66 ATGTTACAACTTGATGAGTTGGAAGAACTGAGGTTGTTTTCCAATGAGAATGCCAAAATGAGTAA
27456670 AGAA
1 AGAA
27456674 AGATCAAAGA
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (130 bp):
AGAATAAAGATCATTGGACTTTGAAGCAATTGAACTTTGATCTTAAGAAAGTGGGTCAGAGAAGG
ATGTTACAACTTGATGAGTTGGAAGAACTGAGGTTGTTTTCCAATGAGAATGCCAAAATGAGTAA
Found at i:27460341 original size:28 final size:28
Alignment explanation
Indices: 27460301--27460361 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
27460291 CATCAAGCAT
* *
27460301 CATTCTCTCTTTTTCTCTTAGGCTTTTC
1 CATTCTCACTTTTTCTCTTAGCCTTTTC
27460329 CATTCTCACTTTTTCTCTTAGCCTTTTC
1 CATTCTCACTTTTTCTCTTAGCCTTTTC
27460357 CATTC
1 CATTC
27460362 CCACACCTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.10, C:0.31, G:0.05, T:0.54
Consensus pattern (28 bp):
CATTCTCACTTTTTCTCTTAGCCTTTTC
Found at i:27469487 original size:27 final size:27
Alignment explanation
Indices: 27469456--27469519 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
27469446 TCAGAAAAAG
*
27469456 GCCTTTGTGGCGTAATATGAAA-GAAA
1 GCCTTTGTGGCGGAATATGAAAGGAAA
* *
27469482 GCCCTTGTGGCGGAATATGAAAGGAAT
1 GCCTTTGTGGCGGAATATGAAAGGAAA
27469509 GCCTTTGTGGC
1 GCCTTTGTGGC
27469520 AAAATTTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (27 bp):
GCCTTTGTGGCGGAATATGAAAGGAAA
Found at i:27475907 original size:20 final size:20
Alignment explanation
Indices: 27475882--27475929 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
27475872 TTTAGTATTA
27475882 AAGTTATGCATTGAAATGGT
1 AAGTTATGCATTGAAATGGT
27475902 AAGTTATGCATTGAAATGGT
1 AAGTTATGCATTGAAATGGT
27475922 AAGTTATG
1 AAGTTATG
27475930 TTCATGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.35
Consensus pattern (20 bp):
AAGTTATGCATTGAAATGGT
Found at i:27476364 original size:43 final size:42
Alignment explanation
Indices: 27476308--27476406 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 42
27476298 ATGGCCTGAG
*
27476308 ACACGAGCGTGTGTCTCAGCCGTGTGACTTACACAGCCTAGCT
1 ACACG-GCGTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
* ** *
27476351 ACACGGCTGTGTGTCTCAGCCATGTGAGTTACATGGCTTAGCT
1 ACACGGC-GTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
27476394 ACACGGTCGTGTG
1 ACACGG-CGTGTG
27476407 ACCCTTACAG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.04
43 46 0.94
44 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (42 bp):
ACACGGCGTGTGTCTCAGCCATGTGACTTACACAGCCTAGCT
Found at i:27479630 original size:30 final size:29
Alignment explanation
Indices: 27479596--27479659 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 29
27479586 AATTTTTGAT
27479596 AATTGGATC-AAATCAAAATTTAATGTATAA
1 AATTGGA-CAAAATCAAAATTT-ATGTATAA
* *
27479626 AATTGTACAAAATCACAATTTATGTATAA
1 AATTGGACAAAATCAAAATTTATGTATAA
27479655 AATTG
1 AATTG
27479660 CACATTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.48, C:0.08, G:0.09, T:0.34
Consensus pattern (29 bp):
AATTGGACAAAATCAAAATTTATGTATAA
Found at i:27479676 original size:30 final size:29
Alignment explanation
Indices: 27479605--27479663 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
27479595 TAATTGGATC
*
27479605 AAATCAAAATTTAATGTATAAAATTGTACA
1 AAATC-AAATTTAATGTATAAAATTGCACA
27479635 AAATCACAATTT-ATGTATAAAATTGCACA
1 AAATCA-AATTTAATGTATAAAATTGCACA
27479664 TTAGGTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (29 bp):
AAATCAAATTTAATGTATAAAATTGCACA
Found at i:27484029 original size:14 final size:14
Alignment explanation
Indices: 27484010--27484038 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27484000 TTCAATAGAA
27484010 TTCCCTTAAGATTT
1 TTCCCTTAAGATTT
27484024 TTCCCTTAAGATTT
1 TTCCCTTAAGATTT
27484038 T
1 T
27484039 CACGAAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCCCTTAAGATTT
Found at i:27484258 original size:36 final size:36
Alignment explanation
Indices: 27484218--27484286 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
27484208 CAAAGGCTAC
*
27484218 AATTAAAAGTTGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
*
27484254 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
27484287 TTAAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
Found at i:27484259 original size:19 final size:17
Alignment explanation
Indices: 27484233--27484286 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
27484223 AAAGTTGTAT
27484233 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
27484250 ACATAATTAGAAGCTGT-AT
1 AC--AATTAGAA-CTCTAAG
27484269 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
27484286 A
1 A
27484287 TTAAATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.41
19 11 0.38
20 3 0.10
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:27484276 original size:17 final size:17
Alignment explanation
Indices: 27484215--27484278 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
27484205 CATCAAAGGC
* *
27484215 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
27484232 TACAATTAGAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
27484249 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
27484268 TACAATTAGAA
1 TACAATTAGAA
27484279 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:27489343 original size:17 final size:17
Alignment explanation
Indices: 27489321--27489384 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
27489311 CATCAAAGGC
*
27489321 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
27489338 TACAATTAGAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
27489355 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
27489374 TACAATTAGAA
1 TACAATTAGAA
27489385 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:27489365 original size:19 final size:17
Alignment explanation
Indices: 27489339--27489392 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
27489329 AAAGCTGTAT
27489339 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
27489356 ACATAATTAGAAGCTGT-AT
1 AC--AATTAGAA-CTCTAAG
27489375 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
27489392 A
1 A
27489393 TTAAAAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.41
19 11 0.38
20 3 0.10
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:27489371 original size:36 final size:36
Alignment explanation
Indices: 27489324--27489392 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
27489314 CAAAGGCTAC
27489324 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
*
27489360 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
27489393 TTAAAAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
Found at i:27491212 original size:18 final size:18
Alignment explanation
Indices: 27491177--27491215 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
27491167 AAAATATTTA
*
27491177 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
27491195 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
27491215 T
1 T
27491216 AAAATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:27497099 original size:17 final size:16
Alignment explanation
Indices: 27497077--27497141 Score: 53
Period size: 17 Copynumber: 4.0 Consensus size: 16
27497067 TATGTATATA
27497077 TAATAAATATATAAAAT
1 TAATAAATAT-TAAAAT
* *
27497094 TAATAATTATTAAAAA
1 TAATAAATATTAAAAT
* *
27497110 T-ATAAAAATTAAATT
1 TAATAAATATTAAAAT
27497125 TAATGATAATA-TAAAAT
1 TAAT-A-AATATTAAAAT
27497142 ATGTAGTGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
15 11 0.30
16 8 0.22
17 15 0.41
18 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TAATAAATATTAAAAT
Found at i:27497773 original size:20 final size:19
Alignment explanation
Indices: 27497745--27497837 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 19
27497735 AATGATTAAA
27497745 TAATCAAATATTAATAAAAAT
1 TAAT-AAATATT-ATAAAAAT
*
27497766 TAATAAATATT-TAACAA-
1 TAATAAATATTATAAAAAT
* *
27497783 TATTAAA-ATTGATATAAACT
1 TAATAAATATT-ATA-AAAAT
27497803 T-ATAAATATTATAAAAAT
1 TAATAAATATTATAAAAAT
* *
27497821 ATAACAAATATAATAAA
1 -TAATAAATATTATAAA
27497838 TTCTATAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
16 3 0.05
17 6 0.11
18 11 0.19
19 10 0.18
20 23 0.40
21 4 0.07
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
TAATAAATATTATAAAAAT
Found at i:27497837 original size:37 final size:37
Alignment explanation
Indices: 27497744--27497861 Score: 91
Period size: 37 Copynumber: 3.1 Consensus size: 37
27497734 AAATGATTAA
*
27497744 ATAATCAAATATTAATAAAAATTAATAAATATT-TAACAAT
1 ATAA-CAAATA-TAAT-AAAATT-ATAAATATTATAAAAAT
* *
27497784 ATTA-AAAT-TGATATAAACTTATAAATATTATAAAAAT
1 ATAACAAATAT-A-ATAAAATTATAAATATTATAAAAAT
*
27497821 ATAACAAATATAATAAATTCTATAAA-ATTAATAAAATAT
1 ATAACAAATATAATAAAAT-TATAAATATT-ATAAAA-AT
27497860 AT
1 AT
27497862 TTAATTTTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 17
0.75 0.06 0.20
Matches are distributed among these distances:
36 10 0.15
37 24 0.37
38 23 0.35
39 5 0.08
40 3 0.05
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (37 bp):
ATAACAAATATAATAAAATTATAAATATTATAAAAAT
Found at i:27499315 original size:38 final size:37
Alignment explanation
Indices: 27499270--27499370 Score: 105
Period size: 36 Copynumber: 2.7 Consensus size: 37
27499260 ATAATAAATT
* *
27499270 AACACTAGCAGTAATCATGCTTAACATGTTTTCGGTTC
1 AACACTAGCAGTAA-CATGCTTAACATGTATTCAGTTC
* * *
27499308 ATCACTAGCTG-AACATGCTTAACGTGTATTCAGTTC
1 AACACTAGCAGTAACATGCTTAACATGTATTCAGTTC
* *
27499344 AACACAAACAGTAACCATGCTTTAACA
1 AACACTAGCAGTAA-CATGC-TTAACA
27499371 AGTGTTCAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
36 27 0.54
37 4 0.08
38 14 0.28
39 5 0.10
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (37 bp):
AACACTAGCAGTAACATGCTTAACATGTATTCAGTTC
Found at i:27502751 original size:13 final size:15
Alignment explanation
Indices: 27502735--27502768 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
27502725 ATTTACTTTC
27502735 TTTATTTTTA-C-TT
1 TTTATTTTTAGCATT
27502748 TTTATTTTTAGCATT
1 TTTATTTTTAGCATT
27502763 TTTATT
1 TTTATT
27502769 GTCATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
14 1 0.05
15 8 0.42
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTATTTTTAGCATT
Found at i:27507770 original size:40 final size:40
Alignment explanation
Indices: 27507681--27507904 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
27507671 TTGAATGCTG
* *
27507681 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
27507720 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
27507760 TCCGGCCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27507799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
27507839 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
27507880 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27507905 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 51 0.31
40 102 0.63
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27507893 original size:80 final size:80
Alignment explanation
Indices: 27507681--27507904 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
27507671 TTGAATGCTG
* * * * *
27507681 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
27507743 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * * *
27507760 TCCGGCCTAAG-CCCAAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
27507823 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
27507839 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
27507904 G
66 G
27507905 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 10 0.08
79 56 0.46
80 54 0.44
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:27507922 original size:80 final size:79
Alignment explanation
Indices: 27507688--27507937 Score: 219
Period size: 80 Copynumber: 3.2 Consensus size: 79
27507678 CTGTCCGGGC
* * * **
27507688 TAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCATTTGAAC
* *
27507749 GAGAT-ACTAATTCCGGCC
63 GAG-TGACTAAATCCGG-T
* * * **
27507767 TAAG-CCCAAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
27507831 TTACTAAATCCGGGT
66 TGACTAAATCC-GGT
*
27507846 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
27507910 G-GAGCTATATCCGGT
65 GTGA-CTAAATCCGGT
* *
27507925 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
27507938 TACGTGATTT
Statistics
Matches: 144, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
78 10 0.07
79 63 0.44
80 69 0.48
81 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGT
Found at i:27515994 original size:40 final size:40
Alignment explanation
Indices: 27515809--27515980 Score: 267
Period size: 40 Copynumber: 4.3 Consensus size: 40
27515799 GGACTAAGAT
* *
27515809 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
*
27515848 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
*
27515888 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
* *
27515928 CCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTC
27515968 CCGAAGGCATTTG
1 CCGAAGGCATTTG
27515981 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
39 35 0.28
40 88 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC
Found at i:27534702 original size:6 final size:6
Alignment explanation
Indices: 27534691--27534729 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
27534681 GTTAATAAAG
*
27534691 ACACAT ACACAT ACACAT ACACAC ACACAT ACACAT ACA
1 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACA
27534730 TGCACACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.51, C:0.36, G:0.00, T:0.13
Consensus pattern (6 bp):
ACACAT
Found at i:27534718 original size:18 final size:18
Alignment explanation
Indices: 27534691--27534742 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
27534681 GTTAATAAAG
*
27534691 ACACATACACATACACAT
1 ACACACACACATACACAT
27534709 ACACACACACATACACAT
1 ACACACACACATACACAT
27534727 ACATGCACACACATAC
1 ACA--CACACACATAC
27534743 GCGTGCACGC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 20 0.65
20 11 0.35
ACGTcount: A:0.48, C:0.37, G:0.02, T:0.13
Consensus pattern (18 bp):
ACACACACACATACACAT
Found at i:27534754 original size:20 final size:20
Alignment explanation
Indices: 27534697--27534765 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
27534687 AAAGACACAT
27534697 ACACATACACATACA--CAC
1 ACACATACACATACACGCAC
*
27534715 ACACATACACATACATGCAC
1 ACACATACACATACACGCAC
* * *
27534735 ACACATACGCGTGCACGCAC
1 ACACATACACATACACGCAC
* *
27534755 AAACACACACA
1 ACACATACACA
27534766 GACAGACTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 15 0.37
20 26 0.63
ACGTcount: A:0.45, C:0.38, G:0.07, T:0.10
Consensus pattern (20 bp):
ACACATACACATACACGCAC
Found at i:27539507 original size:23 final size:23
Alignment explanation
Indices: 27539480--27539534 Score: 56
Period size: 26 Copynumber: 2.3 Consensus size: 23
27539470 GTTGTGGATG
*
27539480 CTTAGAAGTTGTTAGCTAGGACT
1 CTTAGAAGTTGCTAGCTAGGACT
*
27539503 CTTAGGAGAAGTTGCTAGGTAGGACT
1 CTT---AGAAGTTGCTAGCTAGGACT
*
27539529 CCTAGA
1 CTTAGA
27539535 GTAAAATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
23 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (23 bp):
CTTAGAAGTTGCTAGCTAGGACT
Done.