Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 101 of 222
Found at i:31881593 original size:22 final size:22
Alignment explanation
Indices: 31881538--31881594 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
31881528 AAAATATGTT
* * **
31881538 TTTTAGTCATTTTAAAGTAAAA
1 TTTTAATCTTTTTAAAACAAAA
31881560 TTTTAAAT-TTTTTAAAACAAAA
1 TTTT-AATCTTTTTAAAACAAAA
31881582 TTTTAATCTTTTT
1 TTTTAATCTTTTT
31881595 CAACTATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 24 0.83
23 2 0.07
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTTAATCTTTTTAAAACAAAA
Found at i:31881643 original size:142 final size:141
Alignment explanation
Indices: 31881366--31881631 Score: 453
Period size: 142 Copynumber: 1.9 Consensus size: 141
31881356 AAATAAAGAT
*
31881366 AAAGTTTAGGTTTTTAAAATAAAAATATGTTTTTAGTCATATTAAAGGAAAATTTTAAATTTTTA
1 AAAGTTTAGATTTTTAAAATAAAAATATGTTTTTAGTCATATTAAAGGAAAATTTTAAATTTTTA
* * *
31881431 AAATAAAGTTTTAATCTTTTTCAACTATTTCGAAAATAAAGTTTTGATTTTTAAGAAAAAAAGTG
66 AAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTTAAGAAAAAAAGTG
31881496 ATTTAAAAAAA
131 ATTTAAAAAAA
* *
31881507 AAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATTTTAAAGTAAAATTTTAAATTTTT
1 AAAGTTTAGATTTTTAAAATAAAAATATG-TTTTTAGTCATATTAAAGGAAAATTTTAAA-TTTT
31881572 TAAAACAAAATTTTAATCTTTTTCAACTATTTCG-AAATAAAATTTTGATTTTTAAGAAAA
64 TAAAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTTAAGAAAA
31881632 TAGTTTTTTT
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
141 28 0.24
142 53 0.45
143 36 0.31
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.43
Consensus pattern (141 bp):
AAAGTTTAGATTTTTAAAATAAAAATATGTTTTTAGTCATATTAAAGGAAAATTTTAAATTTTTA
AAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTTAAGAAAAAAAGTG
ATTTAAAAAAA
Found at i:31882010 original size:21 final size:21
Alignment explanation
Indices: 31881986--31882027 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
31881976 TTTATTCACA
31881986 CTTATATAATTTTTATTTATT
1 CTTATATAATTTTTATTTATT
* *
31882007 CTTATTTTATTTTTATTTATT
1 CTTATATAATTTTTATTTATT
31882028 TTCATGTCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
CTTATATAATTTTTATTTATT
Found at i:31882028 original size:10 final size:10
Alignment explanation
Indices: 31881994--31882029 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
31881984 CACTTATATA
31881994 ATTTTTATTT
1 ATTTTTATTT
*
31882004 ATTCTTATTTT
1 ATTTTTA-TTT
31882015 ATTTTTATTT
1 ATTTTTATTT
31882025 ATTTT
1 ATTTT
31882030 CATGTCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:31891571 original size:25 final size:27
Alignment explanation
Indices: 31891520--31891572 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
31891510 AGTCGAAATA
*
31891520 GATTTTTGACATCTATATATATGTTTG
1 GATTTTTGACATCTATATATATATTTG
31891547 GATTTTTG-CA-CTATAT-TATTATTTG
1 GATTTTTGACATCTATATATA-TATTTG
31891572 G
1 G
31891573 GATGATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 12 0.50
26 2 0.08
27 8 0.33
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.53
Consensus pattern (27 bp):
GATTTTTGACATCTATATATATATTTG
Found at i:31891575 original size:26 final size:27
Alignment explanation
Indices: 31891520--31891575 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
31891510 AGTCGAAATA
*
31891520 GATTTTTGACATCTATATATATGTTTG
1 GATTTTTGACATCTATATATATGTTGG
31891547 GATTTTTG-CA-CTATATTATTAT-TTGG
1 GATTTTTGACATCTATA-TA-TATGTTGG
31891573 GAT
1 GAT
31891576 GATTTTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 5 0.19
26 10 0.38
27 11 0.42
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (27 bp):
GATTTTTGACATCTATATATATGTTGG
Found at i:31899123 original size:26 final size:27
Alignment explanation
Indices: 31899085--31899142 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
31899075 AATATTAAAT
* *
31899085 TATTTATATAATTT-TATTATATATTA
1 TATTTTTAAAATTTGTATTATATATTA
* *
31899111 TATTTTTAAAATTTGTATTTTCTATTA
1 TATTTTTAAAATTTGTATTATATATTA
31899138 T-TTTT
1 TATTTT
31899143 AATGATGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (27 bp):
TATTTTTAAAATTTGTATTATATATTA
Found at i:31907646 original size:55 final size:55
Alignment explanation
Indices: 31907576--31907681 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
31907566 TAACAAACAG
* *
31907576 ATTCTTAATGGTGTTGAAAAGTTCAGTTTTAGATCAGATTTATTGAGTTGAGTTA
1 ATTCTTAATGCTGTTGAAAAATTCAGTTTTAGATCAGATTTATTGAGTTGAGTTA
* * *
31907631 ATTCTTAATGCTGTTGAAAAATTCGGTTTTCGATTAGATTTATTGAGTTGA
1 ATTCTTAATGCTGTTGAAAAATTCAGTTTTAGATCAGATTTATTGAGTTGA
31907682 ATTAGTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (55 bp):
ATTCTTAATGCTGTTGAAAAATTCAGTTTTAGATCAGATTTATTGAGTTGAGTTA
Found at i:31918285 original size:27 final size:27
Alignment explanation
Indices: 31918196--31918363 Score: 139
Period size: 27 Copynumber: 6.3 Consensus size: 27
31918186 GGGGTAAAAT
* *
31918196 GGTAATTTTACCC--CCAGGGGTATTTT
1 GGTAATTTTACCCTTCGA-GGGTATTTC
* *
31918222 GGTCATTTTACCCTTCGGGGGTATTTC
1 GGTAATTTTACCCTTCGAGGGTATTTC
** * *
31918249 ATTCATTTTACCCTTCGAGGGTATTAC
1 GGTAATTTTACCCTTCGAGGGTATTTC
*
31918276 GGTAAATTTA-CCTGTCGAGGTGT-TTT-
1 GGTAATTTTACCCT-TCGAGG-GTATTTC
* *
31918302 GGTAATTTTATCCTTCAAGGGTATTTC
1 GGTAATTTTACCCTTCGAGGGTATTTC
* * *
31918329 GATAATTTTACCCTTAGGGGGTATTTC
1 GGTAATTTTACCCTTCGAGGGTATTTC
*
31918356 GATAATTT
1 GGTAATTT
31918364 GCCTACGAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 13
0.78 0.14 0.09
Matches are distributed among these distances:
25 2 0.02
26 32 0.28
27 78 0.68
28 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTAATTTTACCCTTCGAGGGTATTTC
Found at i:31922204 original size:24 final size:24
Alignment explanation
Indices: 31922177--31922233 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
31922167 GTGGGCATGT
**
31922177 CACTCAATAGTGTTGTGGTC-AAGC
1 CACTCAATAACGTTGTGG-CAAAGC
31922201 CACTCAATAACGTTGTGGCAAAGC
1 CACTCAATAACGTTGTGGCAAAGC
*
31922225 CACTTAATA
1 CACTCAATA
31922234 TTTTAGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (24 bp):
CACTCAATAACGTTGTGGCAAAGC
Found at i:31923236 original size:13 final size:13
Alignment explanation
Indices: 31923218--31923242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31923208 ATTGTAAAGC
31923218 AAAAAATAAGAAA
1 AAAAAATAAGAAA
31923231 AAAAAATAAGAA
1 AAAAAATAAGAA
31923243 CACACAGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAAAATAAGAAA
Found at i:31930278 original size:22 final size:22
Alignment explanation
Indices: 31930253--31930301 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
31930243 AATGATCATT
31930253 GTGGTAGTGCGGAAG-TGGTGAG
1 GTGGTAGTGC-GAAGATGGTGAG
* *
31930275 GTGGTGGTGCGACGATGGTGAG
1 GTGGTAGTGCGAAGATGGTGAG
31930297 GTGGT
1 GTGGT
31930302 GGTGTGGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.14, C:0.06, G:0.55, T:0.24
Consensus pattern (22 bp):
GTGGTAGTGCGAAGATGGTGAG
Found at i:31940173 original size:40 final size:40
Alignment explanation
Indices: 31940075--31940377 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
31940065 TCCTCGTTCA
* * * * *
31940075 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
31940114 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
31940154 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31940194 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
31940234 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
31940274 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
31940314 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
31940354 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
31940378 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:31960931 original size:50 final size:50
Alignment explanation
Indices: 31960830--31961316 Score: 645
Period size: 50 Copynumber: 9.6 Consensus size: 50
31960820 TGTGAGCTAG
**
31960830 TGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGAG---ATGAGAGGTCCCA
*
31960886 TGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
31960936 TGTAAGACCATGTCTAGGACATGACATTGGCACCGAGATGTGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
31960986 TGTATGACCATCTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * *
31961036 TGTACGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAAAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
31961086 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * *
31961136 TGTAAGACCACGTCTGGGGCATGGCGTTGGCACCAAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
31961186 TGTAAGACCATGTCTGGGACATGACA-TGGCACC-AGGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATGAGAGGTCCCA
* * * * * **
31961235 CGTAAGGCCATGTCTGGGACATGGCATGGGCATCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
31961285 TGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA
31961317 GTACAGGAAA
Statistics
Matches: 386, Mismatches: 42, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
48 1 0.00
49 43 0.11
50 307 0.80
51 1 0.00
53 4 0.01
56 30 0.08
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:31962859 original size:23 final size:23
Alignment explanation
Indices: 31962823--31962873 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
31962813 GGGAGAGAAA
31962823 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
31962846 TGTAATA-CCTCGAAAATTACTAC
1 TGTAATATCC-CGAAAATTACTAC
*
31962869 AGTAA
1 TGTAA
31962874 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 2 0.08
23 24 0.92
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:31980956 original size:50 final size:50
Alignment explanation
Indices: 31980895--31981284 Score: 383
Period size: 51 Copynumber: 7.7 Consensus size: 50
31980885 TTTTATCATT
*
31980895 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * *
31980945 CGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTATA
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * * * * * *
31980995 CGATTCACGTAGTAGCCTTCACATATTATTACACATGTGACAAAAGCTTT-
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGAC-CAAGTTTTA
* * * *
31981045 CTGGTACACATAGTAGCCTTCACTTAGTATTACACATGTGACCATCA-TTTGT-
1 C-GGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA--AGTTT-TA
* * * * *
31981097 CGATTCACGTAGTAGTCTTCACACAGTACTACACACGTGATCAAGTTTTA
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* *
31981147 CGGTTCACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTTTT-
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTA
* * * * * ***
31981198 TGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGGCCATCATTTA
1 CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * *
31981248 TCGATACACGTAGGAGCCTTCACACAGTACTACACAC
1 -CGGTACACGTAGTAGCCTTCACATAGTACTACACAC
31981285 ATGTTCATCG
Statistics
Matches: 281, Mismatches: 48, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
49 5 0.02
50 127 0.45
51 142 0.51
52 7 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
Found at i:31981154 original size:152 final size:151
Alignment explanation
Indices: 31980896--31981284 Score: 557
Period size: 152 Copynumber: 2.6 Consensus size: 151
31980886 TTTATCATTC
* * * * *
31980896 GGTACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA--AGTTTTACGGTTCACGTAGTA
1 GGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCA-TTTT-CGATTCACGTAGTA
* * *
31980959 GCCTTCACATAGTACTACACACGTGATCAAGTTATACGATTCACGTAGTAGCCTTCACATATTAT
64 GCCTTCACACAGTACTACACACGTGATCAAGTTATACGATTCACGTAGTAGCCTTCACATAGTAC
*
31981024 TACACATGTGACAAAAGCTTTCT
129 TACACACGTGACAAAAGCTTTCT
*
31981047 GGTACACATAGTAGCCTTCACTTAGTATTACACATGTGACCATCATTTGTCGATTCACGTAGTAG
1 GGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTT-TCGATTCACGTAGTAG
* * *
31981112 TCTTCACACAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGTAGCCTTCACATAGTACT
65 CCTTCACACAGTACTACACACGTGATCAAGTTATACGATTCACGTAGTAGCCTTCACATAGTACT
* * *
31981177 ACATACGTGACCAAAGCTTTTT
130 ACACACGTGACAAAAGCTTTCT
* * *
31981199 GGTACACATAGTAGCCTTCACTTAGTACTACACATGTGGCCATCATTTATCGATACACGTAGGAG
1 GGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTT-TCGATTCACGTAGTAG
31981264 CCTTCACACAGTACTACACAC
65 CCTTCACACAGTACTACACAC
31981285 ATGTTCATCG
Statistics
Matches: 213, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
151 37 0.17
152 174 0.82
153 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (151 bp):
GGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTTCGATTCACGTAGTAGC
CTTCACACAGTACTACACACGTGATCAAGTTATACGATTCACGTAGTAGCCTTCACATAGTACTA
CACACGTGACAAAAGCTTTCT
Found at i:31981211 original size:101 final size:100
Alignment explanation
Indices: 31980893--31981284 Score: 396
Period size: 101 Copynumber: 3.9 Consensus size: 100
31980883 ACTTTTATCA
*
31980893 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGT
*
31980958 AGCCTTCACATAGTACTACACACGTGATCAAG-TT
66 AGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * * * * * * *
31980992 ATACGATTCACGTAGTAGCCTTCACATATTATTACACATGTGA-CAAAAGCTTT-CTGGTACACA
1 -TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AAGTTTTAC-GGTTCACG
* * * *
31981055 TAGTAGCCTTCACTTAGTATTACACATGTGACC-ATCATT
62 TAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * *
31981094 TGTCGATTCACGTAGTAGTCTTCACACAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAG
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAG
*
31981159 TAGCCTTCACATAGTACTACATACGTGACCAAAGCTT
65 TAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * ** *** * *
31981196 TTTGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGGCCATCATTTATCGATACACGTAG
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAG
* *
31981261 GAGCCTTCACACAGTACTACACAC
65 TAGCCTTCACATAGTACTACACAC
31981285 ATGTTCATCG
Statistics
Matches: 235, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
99 1 0.00
100 38 0.16
101 121 0.51
102 72 0.31
103 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (100 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACGTAGT
AGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:31983965 original size:428 final size:428
Alignment explanation
Indices: 31983216--31984504 Score: 2551
Period size: 428 Copynumber: 3.0 Consensus size: 428
31983206 TTGATACTGG
31983216 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
1 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
31983281 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
66 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
31983346 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
131 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
31983411 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
196 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
*
31983476 GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTG
261 GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
31983541 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
326 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
31983606 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
391 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
31983644 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
1 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
31983709 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
66 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
31983774 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
131 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
31983839 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
196 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
31983904 GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
261 GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
31983969 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
326 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
31984034 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
391 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
31984072 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
1 AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
31984137 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
66 ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
31984202 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
131 GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
*
31984267 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCTT
196 ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
*
31984332 GGGGATTAATTTGTAAAATTGATAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
261 GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
31984397 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
326 GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
31984462 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
391 TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
31984500 AATAT
1 AATAT
31984505 TCATGGTGAA
Statistics
Matches: 858, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
428 858 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.39
Consensus pattern (428 bp):
AATATGATGGCTTGGTATTTGTGAAAATTTTAATGTTTTAAAAGGATATAATGGTAATTAGTTAA
ATAATATTAAGTAAAATAAAACAAATTACATTATCATCTTCTTTCATTCATTCTCCACCAAACTA
GGGCTAAGAATAAGCCATTGAAGAGCTTTCAATTTCAGCAACTTCACCTTGCTTGTGTGGTATGT
ATTTTAGTTTCGTTTTTAATGATTTTTATGTTTTTGGGATTGTTGTAGCTTAATCTAGCTAGCCT
GGGGATTAATTTGTAAAATTGTTAAAAGATTAGAGTTTTTCCATGAATGAATATAGGTTGCTTTT
GATGTTTGATGAAATAAAATTGATAGTTATCAGTAGACAAACAACTCTTGTTAAGAAATTTTTGA
TGAAATTGTCATTTAGGTATTAAATTGAAAAATAGAAA
Found at i:31984649 original size:17 final size:17
Alignment explanation
Indices: 31984604--31984650 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
31984594 GAATTTCCAT
31984604 TTTGGGTTAAATTATAA
1 TTTGGGTTAAATTATAA
* * *
31984621 TTTTGCTAAAATGTA-AA
1 TTTGGGTTAAAT-TATAA
31984638 TTTGGGTTAAATT
1 TTTGGGTTAAATT
31984651 GAATAAAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
16 1 0.04
17 20 0.87
18 2 0.09
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (17 bp):
TTTGGGTTAAATTATAA
Found at i:31986291 original size:12 final size:12
Alignment explanation
Indices: 31986270--31986299 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
31986260 TCAAACTGTT
*
31986270 ACACGACCTAGC
1 ACACGGCCTAGC
31986282 ACACGGCCTAGC
1 ACACGGCCTAGC
31986294 ACACGG
1 ACACGG
31986300 TCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:31987440 original size:14 final size:14
Alignment explanation
Indices: 31987421--31987448 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31987411 TACAATACAA
31987421 TTCACAATAGTCAT
1 TTCACAATAGTCAT
31987435 TTCACAATAGTCAT
1 TTCACAATAGTCAT
31987449 CACATATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
TTCACAATAGTCAT
Found at i:31989224 original size:14 final size:14
Alignment explanation
Indices: 31989205--31989237 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
31989195 ACCGAGTCAA
*
31989205 CAGTTAACGTATAC
1 CAGTTAACGCATAC
31989219 CAGTTAACGCATAC
1 CAGTTAACGCATAC
31989233 CAGTT
1 CAGTT
31989238 TTATCCCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (14 bp):
CAGTTAACGCATAC
Found at i:32003307 original size:14 final size:14
Alignment explanation
Indices: 32003290--32003319 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32003280 AGTGAGAGAG
*
32003290 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
32003304 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
32003318 GA
1 GA
32003320 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:32003894 original size:20 final size:22
Alignment explanation
Indices: 32003871--32003918 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
32003861 GAAATCTGTC
32003871 AAAAATAA-T-CAAAATTCACT
1 AAAAATAATTGCAAAATTCACT
* *
32003891 AAAAATAATTGTAAAATTGACT
1 AAAAATAATTGCAAAATTCACT
32003913 AAAAAT
1 AAAAAT
32003919 TAACATGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 1 0.04
22 15 0.62
ACGTcount: A:0.60, C:0.08, G:0.04, T:0.27
Consensus pattern (22 bp):
AAAAATAATTGCAAAATTCACT
Found at i:32011983 original size:28 final size:28
Alignment explanation
Indices: 32011919--32012099 Score: 310
Period size: 28 Copynumber: 6.5 Consensus size: 28
32011909 TATTAAGTCT
* *
32011919 GCACACTCAGTGCTATATAATCAA-CTC
1 GCACACTTAGTGCTACATAATCAAGCTC
*
32011946 GCACACTTAGTGCTATATAATCAAGCTC
1 GCACACTTAGTGCTACATAATCAAGCTC
32011974 GCACACTTAGTGCTACATAATCAAGCTC
1 GCACACTTAGTGCTACATAATCAAGCTC
32012002 GCACACTTAGTGCTACATAATCAAGCTC
1 GCACACTTAGTGCTACATAATCAAGCTC
*
32012030 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAGCTC
*
32012058 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAGCTC
32012086 GCACACTTAGTGCT
1 GCACACTTAGTGCT
32012100 GTACAATTTA
Statistics
Matches: 150, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 23 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
GCACACTTAGTGCTACATAATCAAGCTC
Found at i:32022461 original size:47 final size:47
Alignment explanation
Indices: 32022394--32022556 Score: 209
Period size: 47 Copynumber: 3.3 Consensus size: 47
32022384 AAAGTGTATA
*
32022394 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAGAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTG
*
32022441 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG--A--G---A-GTG
* * *
32022496 TATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGCG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTG
32022543 TATATATGTGATAA
1 TATATATGTGATAA
32022557 ATGTGAAAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
47 55 0.54
48 1 0.01
49 1 0.01
51 1 0.01
53 1 0.01
54 1 0.01
55 42 0.41
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTG
Found at i:32022547 original size:102 final size:98
Alignment explanation
Indices: 32022375--32022556 Score: 292
Period size: 102 Copynumber: 1.8 Consensus size: 98
32022365 GTATATTTGA
* * *
32022375 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAGAGT
1 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGAGGAATGTGAAAGC
32022440 GTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GTATATATGTGATAAGGCCTAATGGCCGATGTG
*
32022473 ATGAATGTGAAAGTGTATATATGTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGA
1 ATGAATGTGAAAGTG--TATA--TATATATGTGATAAGGCCTAATGGCCGACGTGAGGAATGTGA
32022538 AAGCGTATATATGTGATAA
62 AAGCGTATATATGTGATAA
32022557 ATGTGAAAGC
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
98 15 0.20
100 4 0.05
102 57 0.75
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (98 bp):
ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGACGTGAGGAATGTGAAAGC
GTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:32022559 original size:25 final size:25
Alignment explanation
Indices: 32022531--32022581 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32022521 CGATGTGAGG
32022531 AATGTGAAAGCGTATATATGTGATA
1 AATGTGAAAGCGTATATATGTGATA
32022556 AATGTGAAAGCGTATATATGTGATA
1 AATGTGAAAGCGTATATATGTGATA
32022581 A
1 A
32022582 GGCCTAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (25 bp):
AATGTGAAAGCGTATATATGTGATA
Found at i:32022577 original size:72 final size:72
Alignment explanation
Indices: 32022495--32022628 Score: 250
Period size: 72 Copynumber: 1.9 Consensus size: 72
32022485 GTGTATATAT
32022495 GTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGCGTATATATGTGATAAATG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGCGTATATATGTGATAAATG
32022560 TGAAAGC
66 TGAAAGC
* *
32022567 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGCGTATATATGTGATAA
32022629 CGCCTAATGG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (72 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGAGGAATGTGAAAGCGTATATATGTGATAAATG
TGAAAGC
Found at i:32022599 original size:47 final size:47
Alignment explanation
Indices: 32022548--32022777 Score: 280
Period size: 47 Copynumber: 4.7 Consensus size: 47
32022538 AAGCGTATAT
* *
32022548 ATGTGATAAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32022595 ATGTGATGAATGTGAAAGTGTATATATGTGATAACGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32022642 ATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--G--TGTA--T-ATATGTGATAAGGCCTAATGGCCG
** * * * *
32022696 ATGTGATGAATGTGAAAGTGTATATATGTGGCAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32022743 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32022778 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
47 108 0.68
48 1 0.01
49 1 0.01
50 3 0.02
51 3 0.02
52 1 0.01
53 1 0.01
54 40 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32022648 original size:174 final size:173
Alignment explanation
Indices: 32022394--32022725 Score: 592
Period size: 174 Copynumber: 1.9 Consensus size: 173
32022384 AAAGTGTATA
* *
32022394 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAGAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAACGCC
* *
32022459 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTATATATGTGATAAGGCCTAATGGCCGA
66 TAATGGCCGATGTGATGAATGTGAAAGCGTATATATGT-GATATGTGATAAGGCCTAATGGCCGA
32022524 TGTGAGGAATGTGAAAGCGTATATATGTGATAAATGTGAAAGCG
130 TGTGAGGAATGTGAAAGCGTATATATGTGATAAATGTGAAAGCG
*
32022568 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAACGCC
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAACGCC
32022633 TAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCGAT
66 TAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCGAT
* *
32022698 GTGATGAATGTGAAAGTGTATATATGTG
131 GTGAGGAATGTGAAAGCGTATATATGTG
32022726 GCAGGGCCGA
Statistics
Matches: 151, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
173 52 0.34
174 99 0.66
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (173 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAACGCC
TAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATATGTGATAAGGCCTAATGGCCGAT
GTGAGGAATGTGAAAGCGTATATATGTGATAAATGTGAAAGCG
Found at i:32022681 original size:54 final size:54
Alignment explanation
Indices: 32022618--32022725 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
32022608 GAAAGTGTAT
32022618 ATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
1 ATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
* *
32022672 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
32022726 GCAGGGCCGA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (54 bp):
ATATGTGATAACGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
Found at i:32022703 original size:101 final size:101
Alignment explanation
Indices: 32022571--32022775 Score: 311
Period size: 101 Copynumber: 2.0 Consensus size: 101
32022561 GAAAGCGTAT
* *
32022571 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAACGCCTAA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAACGCCGAA
* * *
32022636 TGGCCGATGTGATGAATGTGAAAGCGTATATATGTG
66 TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
* ** *
32022672 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGCAGGGCCGAG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAACGCCGAA
* *
32022737 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
66 TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
32022773 ATA
1 ATA
32022776 AGTCCCGAAG
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 93 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (101 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAACGCCGAA
TGGCCAACGTGATGAATGTGAAAGCGTATAAATGTG
Found at i:32022952 original size:37 final size:37
Alignment explanation
Indices: 32022896--32022973 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32022886 CCGAGCTCTA
* *
32022896 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32022933 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32022970 AAGA
1 AAGA
32022974 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32029806 original size:40 final size:40
Alignment explanation
Indices: 32029751--32029899 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
32029741 AAGGTTACCA
* * **
32029751 AAGTACTAACAGGGGCACATATGTGCATTTAGTTGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCATTTAGAGGTATCG
* * *
32029791 AAGTACAAACAGGGGCACGTATGGGCATTCAGCGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCATTTAGAGGTATCG
* * * *
32029831 GAGTACAAACAGGGGCATGTATGTGCATTTAGAGGTACCA
1 AAGTACAAACAGGGGCACGTATGTGCATTTAGAGGTATCG
*
32029871 AAGTACAAACAGGGGCGCGTATGTGCATT
1 AAGTACAAACAGGGGCACGTATGTGCATT
32029900 CAGGCAATAA
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (40 bp):
AAGTACAAACAGGGGCACGTATGTGCATTTAGAGGTATCG
Found at i:32029845 original size:80 final size:80
Alignment explanation
Indices: 32029752--32029902 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 80
32029742 AGGTTACCAA
* ** * *
32029752 AGTACTAACAGGGGCACATATGTGCATTTAGTTGTATCGAAGTACAAACAGGGGCACGTATGGGC
1 AGTACAAACAGGGGCACATATGTGCATTTAGAGGTACCAAAGTACAAACAGGGGCACGTATGGGC
32029817 ATTCAGCGGTATCGG
66 ATTCAGCGGTATCGG
** * *
32029832 AGTACAAACAGGGGCATGTATGTGCATTTAGAGGTACCAAAGTACAAACAGGGGCGCGTATGTGC
1 AGTACAAACAGGGGCACATATGTGCATTTAGAGGTACCAAAGTACAAACAGGGGCACGTATGGGC
32029897 ATTCAG
66 ATTCAG
32029903 GCAATAATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (80 bp):
AGTACAAACAGGGGCACATATGTGCATTTAGAGGTACCAAAGTACAAACAGGGGCACGTATGGGC
ATTCAGCGGTATCGG
Found at i:32031051 original size:35 final size:36
Alignment explanation
Indices: 32031005--32031073 Score: 104
Period size: 35 Copynumber: 1.9 Consensus size: 36
32030995 CTGTTTCGTC
* * *
32031005 ACCATTGAAAAATAGGTT-TTACAACTCTCCCCCGT
1 ACCATTGAAAAACAAGTTGTTACAAATCTCCCCCGT
32031040 ACCATTGAAAAACAAGTTGTTACAAATCTCCCCC
1 ACCATTGAAAAACAAGTTGTTACAAATCTCCCCC
32031074 TTAGGAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 16 0.53
36 14 0.47
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.26
Consensus pattern (36 bp):
ACCATTGAAAAACAAGTTGTTACAAATCTCCCCCGT
Found at i:32036529 original size:39 final size:39
Alignment explanation
Indices: 32036486--32036567 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
32036476 CGTTTTTGAT
32036486 TCTTAAATCTTTATTTTGTTCTTGCCATCCCAAACCCTA
1 TCTTAAATCTTTATTTTGTTCTTGCCATCCCAAACCCTA
32036525 TCTTAAATCTTTATTTTGTTCTTGCCATCCCAAACCCTA
1 TCTTAAATCTTTATTTTGTTCTTGCCATCCCAAACCCTA
32036564 TCTT
1 TCTT
32036568 TACTCCATCG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.22, C:0.28, G:0.05, T:0.45
Consensus pattern (39 bp):
TCTTAAATCTTTATTTTGTTCTTGCCATCCCAAACCCTA
Found at i:32037071 original size:20 final size:20
Alignment explanation
Indices: 32037046--32037094 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
32037036 TTTAACTTAG
32037046 GTCAGCTCACTCGAGCTCAA
1 GTCAGCTCACTCGAGCTCAA
*
32037066 GTCAGCTCATTCGAGCTCAA
1 GTCAGCTCACTCGAGCTCAA
*
32037086 TTCAGCTCA
1 GTCAGCTCA
32037095 ATCTTAACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (20 bp):
GTCAGCTCACTCGAGCTCAA
Found at i:32037092 original size:10 final size:10
Alignment explanation
Indices: 32037059--32037096 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
32037049 AGCTCACTCG
*
32037059 AGCTCAAGTC
1 AGCTCAATTC
32037069 AGCTC-ATTC
1 AGCTCAATTC
32037078 GAGCTCAATTC
1 -AGCTCAATTC
32037089 AGCTCAAT
1 AGCTCAAT
32037097 CTTAACCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:32037815 original size:22 final size:21
Alignment explanation
Indices: 32037786--32037833 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
32037776 AAGCATGAAC
*
32037786 TGAA-ATTTTAATGATTTAGTG
1 TGAACATTTTAATGAATT-GTG
* *
32037807 TGAACATTTTTATTAATTGTG
1 TGAACATTTTAATGAATTGTG
32037828 TGAACA
1 TGAACA
32037834 CATAGATGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (21 bp):
TGAACATTTTAATGAATTGTG
Found at i:32039677 original size:28 final size:28
Alignment explanation
Indices: 32039621--32039685 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
32039611 AGGGCGAGCG
*
32039621 AGAAAATGAAAATGAAAAAGAAATTGAA
1 AGAAAATGAAAAAGAAAAAGAAATTGAA
* *
32039649 AGAAAAT-AAAAAGAAAATGACATTGGAA
1 AGAAAATGAAAAAGAAAAAGAAATT-GAA
32039677 AGAAAATGA
1 AGAAAATGA
32039686 GTGAAAAGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 14 0.44
28 17 0.53
29 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.18, T:0.14
Consensus pattern (28 bp):
AGAAAATGAAAAAGAAAAAGAAATTGAA
Found at i:32051065 original size:28 final size:27
Alignment explanation
Indices: 32050999--32051065 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
32050989 CTTTGATAGT
*
32050999 AACAGTACAGTGTGGGCCTTAGCCCAA
1 AACAGTACAGTGTGGGACTTAGCCCAA
* *
32051026 AACAGAAACAGTGT-GGACTTAAGCCCGA
1 AACAG-TACAGTGTGGGACTT-AGCCCAA
*
32051054 TACAGTATCAGT
1 AACAGTA-CAGT
32051066 ATGGTGCAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
AACAGTACAGTGTGGGACTTAGCCCAA
Found at i:32051237 original size:22 final size:21
Alignment explanation
Indices: 32051183--32051247 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
32051173 TGCCAGTAGT
32051183 CAGAATGGCTAAGAGCCATAAA
1 CAGAATGGCTAA-AGCCATAAA
* * * *
32051205 TAGGATAGCTATAAGCTATAAA
1 CAGAATGGCTA-AAGCCATAAA
32051227 CAGAATGGCTACAAGCCATAA
1 CAGAATGGCTA-AAGCCATAA
32051248 GTAAAGTAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (21 bp):
CAGAATGGCTAAAGCCATAAA
Found at i:32051299 original size:32 final size:30
Alignment explanation
Indices: 32051231--32051433 Score: 149
Period size: 32 Copynumber: 6.4 Consensus size: 30
32051221 TATAAACAGA
* **
32051231 ATGGCTAC-AAGCCATAAGTAAAGTAATATG
1 ATGGC-ACAAAGCCATCAGTACTGTAATATG
* * *
32051261 TTTGGCACAAAGCCATCAGTAGTAGTGATATG
1 -ATGGCACAAAGCCATCAGTACT-GTAATATG
* *
32051293 ACTGGCACACAGCCATCAATAACTGTAATATG
1 A-TGGCACAAAGCCATCAGT-ACTGTAATATG
* *
32051325 ATCGGCACAAAGCCATCAGTAACGGTAGTATG
1 AT-GGCACAAAGCCATCAGT-ACTGTAATATG
* * *
32051357 ATCGGTACAAAGCCATCAATAACAGTAATATG
1 AT-GGCACAAAGCCATCAGT-ACTGTAATATG
*
32051389 ATCGACACAAAGCCATCAGTAAC-GATAATATG
1 AT-GGCACAAAGCCATCAGT-ACTG-TAATATG
32051421 ATCGGCACAAAGC
1 AT-GGCACAAAGC
32051434 AGCAAAGCTA
Statistics
Matches: 144, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
30 2 0.01
31 17 0.12
32 123 0.85
33 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (30 bp):
ATGGCACAAAGCCATCAGTACTGTAATATG
Found at i:32051357 original size:64 final size:64
Alignment explanation
Indices: 32051239--32051433 Score: 236
Period size: 64 Copynumber: 3.1 Consensus size: 64
32051229 GAATGGCTAC
* * ***
32051239 AAGCCAT-AAGTAA-AGTAATATGTTTGGCACAAAGCCATCAGTAGTAGT-GATATGA-CTGGCA
1 AAGCCATCAA-TAACAGTAATATGATCGGCACAAAGCCATCAGTAACGGTAG-TATGATC-GGCA
32051300 CA
63 CA
* * *
32051302 CAGCCATCAATAACTGTAATATGATCGGCACAAAGCCATCAGTAACGGTAGTATGATCGGTACA
1 AAGCCATCAATAACAGTAATATGATCGGCACAAAGCCATCAGTAACGGTAGTATGATCGGCACA
* * *
32051366 AAGCCATCAATAACAGTAATATGATCGACACAAAGCCATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAATAACAGTAATATGATCGGCACAAAGCCATCAGTAACGGTAGTATGATCGGCACA
32051430 AAGC
1 AAGC
32051434 AGCAAAGCTA
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
63 9 0.08
64 103 0.90
65 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.21
Consensus pattern (64 bp):
AAGCCATCAATAACAGTAATATGATCGGCACAAAGCCATCAGTAACGGTAGTATGATCGGCACA
Found at i:32051635 original size:24 final size:24
Alignment explanation
Indices: 32051568--32051626 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
32051558 CCATGCTCAG
* * * *
32051568 AATCGGTCATAGAAATCACAAACA
1 AATCAGTCATAAAAATCATAGACA
32051592 AATCAGTCATAAAAATCATAGACA
1 AATCAGTCATAAAAATCATAGACA
*
32051616 AATGAGTCATA
1 AATCAGTCATA
32051627 CATAACATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (24 bp):
AATCAGTCATAAAAATCATAGACA
Found at i:32051841 original size:27 final size:27
Alignment explanation
Indices: 32051808--32051870 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
32051798 CATCACAGTT
32051808 ATTTTACCCCACAAGGGTATTTCGATA
1 ATTTTACCCCACAAGGGTATTTCGATA
** * * *
32051835 ATTTTACCCTTCGAGGGTATTTCGGTC
1 ATTTTACCCCACAAGGGTATTTCGATA
32051862 ATTTTACCC
1 ATTTTACCC
32051871 TACTTTAGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACCCCACAAGGGTATTTCGATA
Found at i:32052544 original size:8 final size:8
Alignment explanation
Indices: 32052531--32052564 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
32052521 TTTTAAATGA
32052531 TATTTTAT
1 TATTTTAT
32052539 TATTTTAT
1 TATTTTAT
32052547 TATTTTAT
1 TATTTTAT
32052555 TA-TTTAT
1 TATTTTAT
32052562 TAT
1 TAT
32052565 ATATATAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTTTAT
Found at i:32062628 original size:21 final size:20
Alignment explanation
Indices: 32062590--32062628 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32062580 TTACTGAATG
* *
32062590 TAAATAAAAGTAAGAAAACT
1 TAAATAAAAATAACAAAACT
32062610 TAAATAAAAAATAACAAAA
1 TAAAT-AAAAATAACAAAA
32062629 ATTCTTGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
TAAATAAAAATAACAAAACT
Found at i:32077022 original size:561 final size:561
Alignment explanation
Indices: 32075960--32077080 Score: 2224
Period size: 561 Copynumber: 2.0 Consensus size: 561
32075950 CACTTTAGTA
32075960 AGAATAATTCAGACATTTCTAGGTTATAGATACGATTTAATTTTTACTAATCTTTTCTTTTTGGG
1 AGAATAATTCAGACATTTCTAGGTTATAGATACGATTTAATTTTTACTAATCTTTTCTTTTTGGG
32076025 TTTAGTGTATGACTCATAGGAGGGGAACACTAGTAGAGCCAGTTACAGATTTTGAGAGAATAATT
66 TTTAGTGTATGACTCATAGGAGGGGAACACTAGTAGAGCCAGTTACAGATTTTGAGAGAATAATT
32076090 CAAAGAAATCATCGACAACAATAGTAGCAGGAGATGCATGATCCAGCACCACTTGCTGCCGGCAA
131 CAAAGAAATCATCGACAACAATAGTAGCAGGAGATGCATGATCCAGCACCACTTGCTGCCGGCAA
32076155 CGTACCATGCAAGAATCTGCTGTTCAATGAAGCTAATAATAATGCTTTAGAAGATCTACCAGCAC
196 CGTACCATGCAAGAATCTGCTGTTCAATGAAGCTAATAATAATGCTTTAGAAGATCTACCAGCAC
32076220 CACCGCAGCTACTGTAAATTTACATATGTCACATAATGAGAGAACCCTAAGAGAGCATACATTAC
261 CACCGCAGCTACTGTAAATTTACATATGTCACATAATGAGAGAACCCTAAGAGAGCATACATTAC
*
32076285 CAAGTCAGGTCATGGTTCAAGAGAGCGTAACAAGGCCGACCATTATAGTGAACAACTTTGAGATC
326 CAAGTCAGGACATGGTTCAAGAGAGCGTAACAAGGCCGACCATTATAGTGAACAACTTTGAGATC
32076350 AAACTGACAATGATTCAGGTGATCCAGAATAATCTGCAATTTAGGGGTACAATGGTAGAGGTTCC
391 AAACTGACAATGATTCAGGTGATCCAGAATAATCTGCAATTTAGGGGTACAATGGTAGAGGTTCC
32076415 AAATCAACATTTAAAATAATTTTCCCAACTTTGTGATACTTTTCAGTATAATGGGGTCACTAATG
456 AAATCAACATTTAAAATAATTTTCCCAACTTTGTGATACTTTTCAGTATAATGGGGTCACTAATG
32076480 ACGCTATTCATCTTCAGTTGTTTCCCTTTTCTTTGATTGAG
521 ACGCTATTCATCTTCAGTTGTTTCCCTTTTCTTTGATTGAG
32076521 AGAATAATTCAGACATTTCTAGGTTATAGATACGATTTAATTTTTACTAATCTTTTCTTTTTGGG
1 AGAATAATTCAGACATTTCTAGGTTATAGATACGATTTAATTTTTACTAATCTTTTCTTTTTGGG
32076586 TTTAGTGTATGACTCATAGGAGGGGAACACTAGTAGAGCCAGTTACAGATTTTGAGAGAATAATT
66 TTTAGTGTATGACTCATAGGAGGGGAACACTAGTAGAGCCAGTTACAGATTTTGAGAGAATAATT
32076651 CAAAGAAATCATCGACAACAATAGTAGCAGGAGATGCATGATCCAGCACCACTTGCTGCCGGCAA
131 CAAAGAAATCATCGACAACAATAGTAGCAGGAGATGCATGATCCAGCACCACTTGCTGCCGGCAA
32076716 CGTACCATGCAAGAATCTGCTGTTCAATGAAGCTAATAATAATGCTTTAGAAGATCTACCAGCAC
196 CGTACCATGCAAGAATCTGCTGTTCAATGAAGCTAATAATAATGCTTTAGAAGATCTACCAGCAC
32076781 CACCGCAGCTACTGTAAATTTACATATGTCACATAATGAGAGAACCCTAAGAGAGCATACATTAC
261 CACCGCAGCTACTGTAAATTTACATATGTCACATAATGAGAGAACCCTAAGAGAGCATACATTAC
32076846 CAAGTCAGGACATGGTTCAAGAGAGCGTAACAAGGCCGACCATTATAGTGAACAACTTTGAGATC
326 CAAGTCAGGACATGGTTCAAGAGAGCGTAACAAGGCCGACCATTATAGTGAACAACTTTGAGATC
*
32076911 AAACTGACAATGATTCAGGTGATCCAGAATAATCTGTAATTTAGGGGTACAATGGTAGAGGTTCC
391 AAACTGACAATGATTCAGGTGATCCAGAATAATCTGCAATTTAGGGGTACAATGGTAGAGGTTCC
32076976 AAATCAACATTTAAAATAATTTTCCCAACTTTGTGATACTTTTCAGTATAATGGGGTCACTAATG
456 AAATCAACATTTAAAATAATTTTCCCAACTTTGTGATACTTTTCAGTATAATGGGGTCACTAATG
32077041 ACGCTATTCATCTTCAGTTGTTTCCCTTTTCTTTGATTGA
521 ACGCTATTCATCTTCAGTTGTTTCCCTTTTCTTTGATTGA
32077081 TAACGCTTTT
Statistics
Matches: 558, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
561 558 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (561 bp):
AGAATAATTCAGACATTTCTAGGTTATAGATACGATTTAATTTTTACTAATCTTTTCTTTTTGGG
TTTAGTGTATGACTCATAGGAGGGGAACACTAGTAGAGCCAGTTACAGATTTTGAGAGAATAATT
CAAAGAAATCATCGACAACAATAGTAGCAGGAGATGCATGATCCAGCACCACTTGCTGCCGGCAA
CGTACCATGCAAGAATCTGCTGTTCAATGAAGCTAATAATAATGCTTTAGAAGATCTACCAGCAC
CACCGCAGCTACTGTAAATTTACATATGTCACATAATGAGAGAACCCTAAGAGAGCATACATTAC
CAAGTCAGGACATGGTTCAAGAGAGCGTAACAAGGCCGACCATTATAGTGAACAACTTTGAGATC
AAACTGACAATGATTCAGGTGATCCAGAATAATCTGCAATTTAGGGGTACAATGGTAGAGGTTCC
AAATCAACATTTAAAATAATTTTCCCAACTTTGTGATACTTTTCAGTATAATGGGGTCACTAATG
ACGCTATTCATCTTCAGTTGTTTCCCTTTTCTTTGATTGAG
Found at i:32083431 original size:11 final size:11
Alignment explanation
Indices: 32083415--32083439 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32083405 GTCAAAAAAT
32083415 TTATTTTATTA
1 TTATTTTATTA
32083426 TTATTTTATTA
1 TTATTTTATTA
32083437 TTA
1 TTA
32083440 CTCAAAGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:32083697 original size:23 final size:24
Alignment explanation
Indices: 32083670--32083724 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
32083660 TTTCAAGGCT
*
32083670 ATTAATTAAGG-TTAATTTAGTAA
1 ATTAATTAAGGATTAATATAGTAA
* *
32083693 TTTAAAT-AGGATTAATATAGTAA
1 ATTAATTAAGGATTAATATAGTAA
*
32083716 AATAATTAA
1 ATTAATTAA
32083725 AACAAAGATA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
22 3 0.12
23 20 0.83
24 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (24 bp):
ATTAATTAAGGATTAATATAGTAA
Found at i:32086834 original size:14 final size:14
Alignment explanation
Indices: 32086815--32086843 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32086805 ACATACCAAA
32086815 TTATGTTCAAATGG
1 TTATGTTCAAATGG
32086829 TTATGTTCAAATGG
1 TTATGTTCAAATGG
32086843 T
1 T
32086844 CATAATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (14 bp):
TTATGTTCAAATGG
Found at i:32091639 original size:8 final size:8
Alignment explanation
Indices: 32091626--32091651 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32091616 GAATTCAATA
32091626 AATTAAAT
1 AATTAAAT
32091634 AATTAAAT
1 AATTAAAT
32091642 AATTAAAT
1 AATTAAAT
32091650 AA
1 AA
32091652 AATTGAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTAAAT
Found at i:32092415 original size:30 final size:30
Alignment explanation
Indices: 32092358--32092415 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32092348 TGCCTTTGAA
* * * *
32092358 AATATTTGCAAAAAGAGACATCTAATTTCT
1 AATATTTACAAAAAGAGAAACCAAATTTCT
32092388 AATATTTACAAAAAGAGAAACCAAATTT
1 AATATTTACAAAAAGAGAAACCAAATTT
32092416 TGAAAATAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (30 bp):
AATATTTACAAAAAGAGAAACCAAATTTCT
Found at i:32095890 original size:47 final size:47
Alignment explanation
Indices: 32095824--32096203 Score: 625
Period size: 47 Copynumber: 8.1 Consensus size: 47
32095814 GAAATGATAG
*
32095824 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32095871 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32095918 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATCTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32095965 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32096012 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32096059 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32096106 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
32096153 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32096200 TAAG
1 TAAG
32096204 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 315 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:32096378 original size:37 final size:37
Alignment explanation
Indices: 32096322--32096400 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32096312 CCGAGCTCTA
* *
32096322 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32096359 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32096396 AAGAC
1 AAGAC
32096401 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32100436 original size:53 final size:53
Alignment explanation
Indices: 32100343--32100458 Score: 142
Period size: 53 Copynumber: 2.2 Consensus size: 53
32100333 GAAGCAGGGA
* **
32100343 CACACGGCCATGTCCCAGCATGTGTCTGTGCCCTAAAACTCTTTGACTTGGGT
1 CACACAGCCATGTCCCAGCATGTGTCCATGCCCTAAAACTCTTTGACTTGGGT
* * * **
32100396 CACACAGCCGTGTCCCAGCCTGTGTCCATGTCCTGTAACTCTTTGACTTGGGT
1 CACACAGCCATGTCCCAGCATGTGTCCATGCCCTAAAACTCTTTGACTTGGGT
* *
32100449 TACACGGCCA
1 CACACAGCCA
32100459 AGCCACACGC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28
Consensus pattern (53 bp):
CACACAGCCATGTCCCAGCATGTGTCCATGCCCTAAAACTCTTTGACTTGGGT
Found at i:32101708 original size:23 final size:23
Alignment explanation
Indices: 32101670--32101720 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32101660 CGAGCTATTG
*
32101670 TGTAATATCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
32101693 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
32101716 AGTAA
1 TGTAA
32101721 GGAAGTATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:32113160 original size:22 final size:22
Alignment explanation
Indices: 32113118--32113162 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32113108 TTATTAACCC
*
32113118 AAATTAAATTGTATATAAATTA
1 AAATTAAATTATATATAAATTA
*
32113140 AAATT-AATTATATTATGAATTA
1 AAATTAAATTATA-TATAAATTA
32113162 A
1 A
32113163 TACATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AAATTAAATTATATATAAATTA
Found at i:32121883 original size:23 final size:23
Alignment explanation
Indices: 32121853--32121896 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32121843 CTTTCTCGCT
* *
32121853 GTAGTAATTTTCGGGGTATTATG
1 GTAGTAATTTTCAGGATATTATG
32121876 GTAGTAATTTTCAGGATATTA
1 GTAGTAATTTTCAGGATATTA
32121897 CAACTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.25, T:0.43
Consensus pattern (23 bp):
GTAGTAATTTTCAGGATATTATG
Found at i:32136176 original size:37 final size:37
Alignment explanation
Indices: 32136126--32136204 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
32136116 TTATTACGAA
* * * *
32136126 GTCTTACTCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32136163 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32136200 GTCTT
1 GTCTT
32136205 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32136344 original size:24 final size:24
Alignment explanation
Indices: 32136322--32136371 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 24
32136312 GCCCTTCGGG
32136322 ACTTATCACATTCATCACATCGGCC
1 ACTT-TCACATTCATCACATCGGCC
32136347 ACTTTCACATTCATCACATCGGCC
1 ACTTTCACATTCATCACATCGGCC
32136371 A
1 A
32136372 TTAGGCCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.28, C:0.36, G:0.08, T:0.28
Consensus pattern (24 bp):
ACTTTCACATTCATCACATCGGCC
Found at i:32136456 original size:96 final size:94
Alignment explanation
Indices: 32136346--32136520 Score: 314
Period size: 96 Copynumber: 1.8 Consensus size: 94
32136336 TCACATCGGC
*
32136346 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATACATACACTTTCACATTCATC
32136411 ACATCGGCCATTAGGCATTATCACATATATA
64 ACATCGGCCATTAGGCATTATCACATATATA
*
32136442 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATACATACACTTTCACATTCATCAC
32136507 ATCGGCCATTAGGC
66 ATCGGCCATTAGGC
32136521 CATACTATCA
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
94 38 0.49
96 39 0.51
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (94 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATACATACACTTTCACATTCATCAC
ATCGGCCATTAGGCATTATCACATATATA
Found at i:32136457 original size:47 final size:47
Alignment explanation
Indices: 32136346--32136521 Score: 307
Period size: 47 Copynumber: 3.7 Consensus size: 47
32136336 TCACATCGGC
*
32136346 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
*
32136395 CACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
32136442 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATACATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
32136489 CACTTTCACATTCATCACATCGGCCATTAGGCC
1 CACTTTCACATTCATCACATCGGCCATTAGGCC
32136522 ATACTATCAT
Statistics
Matches: 123, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
47 85 0.69
49 38 0.31
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:32144856 original size:19 final size:19
Alignment explanation
Indices: 32144825--32144865 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
32144815 TATTTTTTAA
32144825 TAAAAATATTAAATTATAT
1 TAAAAATATTAAATTATAT
*
32144844 TAAATAATA-TAAATTATTT
1 TAAA-AATATTAAATTATAT
32144863 TAA
1 TAA
32144866 TTATGAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAAATATTAAATTATAT
Found at i:32150899 original size:29 final size:29
Alignment explanation
Indices: 32150840--32150899 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
32150830 GCACTTTCAT
* *
32150840 AAAATGTCCAATATAGTATCTGTACTTTC
1 AAAATGTCCAATATAGTATCTGAACTATC
* *
32150869 AAAATGTCCAATGTGGTA-CTTGAACTATC
1 AAAATGTCCAATATAGTATC-TGAACTATC
32150898 AA
1 AA
32150900 TGTGTGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (29 bp):
AAAATGTCCAATATAGTATCTGAACTATC
Found at i:32152582 original size:8 final size:8
Alignment explanation
Indices: 32152533--32152583 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
32152523 AAATTTAATG
32152533 ATAATATA
1 ATAATATA
32152541 A-AATAT-
1 ATAATATA
32152547 ATAATGAT-
1 ATAAT-ATA
32152555 ATAATATA
1 ATAATATA
* *
32152563 TTAATTTA
1 ATAATATA
32152571 ATAATATA
1 ATAATATA
32152579 ATAAT
1 ATAAT
32152584 TGGTGTTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
6 1 0.03
7 10 0.28
8 25 0.69
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:32156774 original size:21 final size:22
Alignment explanation
Indices: 32156748--32156792 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
32156738 ATAGAAATTA
32156748 AAAATATTTAGG-AAATAGACT
1 AAAATATTTAGGAAAATAGACT
32156769 AAAATATTTAGGAAAATAGACT
1 AAAATATTTAGGAAAATAGACT
32156791 AA
1 AA
32156793 TAGTTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.56, C:0.04, G:0.13, T:0.27
Consensus pattern (22 bp):
AAAATATTTAGGAAAATAGACT
Found at i:32162023 original size:137 final size:137
Alignment explanation
Indices: 32161777--32162044 Score: 394
Period size: 137 Copynumber: 2.0 Consensus size: 137
32161767 TTAGGGTTTT
* * * * * *
32161777 CATGTTTCGGGTGCTGGTCTTGAATGTTCTACTGATGGCTGAGATCTGGCATTTTTGTGGATACT
1 CATGTTTCAGGTGCTGATCTTGAATGTCCTACCGATGGCTGAGATCCGACATTTTTGTGGATACT
* *
32161842 CATCAGCTTGTGTGAGTAGCATCGTGCAGCTTACATTCCGACCATCAGCTTGTGTGAGTAGACCC
66 CACCAGCTTGTGTGAGCAGCATCGTGCAGCTTACATTCCGACCATCAGCTTGTGTGAGTAGACCC
32161907 AGGTTAC
131 AGGTTAC
*
32161914 CATGTTTCAGGTGCTGATCTTGAATGTCCTACCGATGGCTGAGTTCCGACATTTTTTGTGGATAC
1 CATGTTTCAGGTGCTGATCTTGAATGTCCTACCGATGGCTGAGATCCGACA-TTTTTGTGGATAC
* * * * *
32161979 TCGCCCGCTTGTGTGAGCGGCATCGTGCAGC-TACATTTCTACCATCAGCTTGTGTGAGTAGACC
65 TCACCAGCTTGTGTGAGCAGCATCGTGCAGCTTACATTCCGACCATCAGCTTGTGTGAGTAGACC
32162043 CA
130 CA
32162045 TTTATGGCTC
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 77 0.66
138 39 0.34
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (137 bp):
CATGTTTCAGGTGCTGATCTTGAATGTCCTACCGATGGCTGAGATCCGACATTTTTGTGGATACT
CACCAGCTTGTGTGAGCAGCATCGTGCAGCTTACATTCCGACCATCAGCTTGTGTGAGTAGACCC
AGGTTAC
Found at i:32165121 original size:40 final size:39
Alignment explanation
Indices: 32165032--32165293 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
32165022 TTGAATGATG
*
32165032 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
32165070 ATCCGGACTAAGATCCGAAGGCATTTGTGCGATATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
32165111 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
32165150 TCCGGGCTAAGCCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32165189 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32165228 TCCGGGTTAAGTCCCGAAGGCATTTGTACGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32165267 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
32165294 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 18, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 129 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32173146 original size:39 final size:40
Alignment explanation
Indices: 32173051--32173312 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
32173041 TTGAATGATG
*
32173051 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32173089 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32173130 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
32173169 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32173208 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
32173247 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32173286 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32173313 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32178452 original size:11 final size:11
Alignment explanation
Indices: 32178436--32178463 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
32178426 TATTGATAGC
32178436 CTTATGCTACA
1 CTTATGCTACA
32178447 CTTATGCTACA
1 CTTATGCTACA
32178458 CTTATG
1 CTTATG
32178464 GGACATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (11 bp):
CTTATGCTACA
Found at i:32181844 original size:24 final size:24
Alignment explanation
Indices: 32181806--32181853 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
32181796 AGTGACCCTT
*
32181806 TTCTACTCACCTCCTTATTTCTCC
1 TTCTACTCACCTCCTTATCTCTCC
32181830 TTCT-CTCACCTTCCTTATCTCTCC
1 TTCTACTCACC-TCCTTATCTCTCC
32181854 ACATAGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.10, C:0.44, G:0.00, T:0.46
Consensus pattern (24 bp):
TTCTACTCACCTCCTTATCTCTCC
Found at i:32183007 original size:17 final size:18
Alignment explanation
Indices: 32182954--32183007 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
32182944 AATAGTTTAA
*
32182954 TCCTC-CTCCTCATCCATC
1 TCCTCACTCCT-ATCCTTC
*
32182972 TCCTCACTCCTATCATTC
1 TCCTCACTCCTATCCTTC
*
32182990 TCCTCA-TCTTATCCTTC
1 TCCTCACTCCTATCCTTC
32183007 T
1 T
32183008 TGTCGCTTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 16 0.52
19 5 0.16
ACGTcount: A:0.13, C:0.46, G:0.00, T:0.41
Consensus pattern (18 bp):
TCCTCACTCCTATCCTTC
Found at i:32185656 original size:22 final size:22
Alignment explanation
Indices: 32185617--32185668 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
32185607 TGGATAAGCC
*
32185617 ACCACTGA-TTGCAGATAAACT
1 ACCACTGATTTGCAAATAAACT
32185638 ACCACTGATTTGCAAATAAACT
1 ACCACTGATTTGCAAATAAACT
32185660 ACCACTGAT
1 ACCACTGAT
32185669 AACACTTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 8 0.28
22 21 0.72
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (22 bp):
ACCACTGATTTGCAAATAAACT
Found at i:32190056 original size:46 final size:46
Alignment explanation
Indices: 32190004--32190097 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
32189994 CAAAGAAAAG
32190004 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
* *
32190050 ACCTCGACTCACTATCAAGGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
32190096 AC
1 AC
32190098 GCCACACTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
Found at i:32192654 original size:50 final size:49
Alignment explanation
Indices: 32192579--32192685 Score: 144
Period size: 50 Copynumber: 2.2 Consensus size: 49
32192569 ATGTATGCTT
* *
32192579 ATACGAGCTATGAATCGGTATGCTCTCATAAGCTGGAAATCAGTAAGCTC
1 ATACGAGCTATGAATCGGTAAGCTCTCATAAGCT-GAAATCAATAAGCTC
* *
32192629 ATACGAGCTGA-GAATCGGTAAGCTCTTATGAGCTGAAATCAATAAGCTC
1 ATACGAGCT-ATGAATCGGTAAGCTCTCATAAGCTGAAATCAATAAGCTC
*
32192678 ATATGAGC
1 ATACGAGC
32192686 AGTGGTATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
49 21 0.41
50 29 0.57
51 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (49 bp):
ATACGAGCTATGAATCGGTAAGCTCTCATAAGCTGAAATCAATAAGCTC
Found at i:32192674 original size:24 final size:24
Alignment explanation
Indices: 32192609--32192685 Score: 100
Period size: 25 Copynumber: 3.1 Consensus size: 24
32192599 TGCTCTCATA
*
32192609 AGCTGGAAATCAGTAAGCTCATACG
1 AGCT-GAAATCAGTAAGCTCATATG
* *
32192634 AGCTGAGAATCGGTAAGCTCTTATG
1 AGCTGA-AATCAGTAAGCTCATATG
*
32192659 AGCTGAAATCAATAAGCTCATATG
1 AGCTGAAATCAGTAAGCTCATATG
32192683 AGC
1 AGC
32192686 AGTGGTATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 20 0.44
25 25 0.56
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (24 bp):
AGCTGAAATCAGTAAGCTCATATG
Found at i:32195838 original size:40 final size:39
Alignment explanation
Indices: 32195794--32196096 Score: 364
Period size: 40 Copynumber: 7.6 Consensus size: 39
32195784 GCTCCTCGTT
* *
32195794 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
32195834 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * *
32195874 CCAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
32195914 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
32195954 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTCGCA
* *
32195994 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * *
32196033 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-T-TTAGTAAC-TCGCA
32196074 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
32196097 ACAGCATTCA
Statistics
Matches: 237, Mismatches: 18, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 47 0.20
40 179 0.76
41 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:32195988 original size:120 final size:119
Alignment explanation
Indices: 32195794--32196095 Score: 407
Period size: 120 Copynumber: 2.5 Consensus size: 119
32195784 GCTCCTCGTT
* * *
32195794 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
32195858 GATTTAGTAACTCGCACCAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65 AATTTAGTAACTCGCACAAATACCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
*
32195914 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
* * *
32195979 ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
66 ATTTAGTAACTCGCACAAATACCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
* * *
32196033 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
32196094 CG
63 CG
32196096 GACAGCATTC
Statistics
Matches: 164, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
118 22 0.13
119 49 0.30
120 91 0.55
121 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATTTAGTAACTCGCACAAATACCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
Found at i:32200174 original size:39 final size:40
Alignment explanation
Indices: 32200075--32200258 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
32200065 TTGAATGATG
* * * *
32200075 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32200114 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32200154 TTCGGGCTAAG-GCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32200193 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32200234 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32200259 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 46 0.38
40 65 0.54
41 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32208158 original size:79 final size:81
Alignment explanation
Indices: 32208022--32208206 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32208012 TTGAATGATG
* *
32208022 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32208086 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32208101 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32208163 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32208181 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32208207 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32208220 original size:40 final size:40
Alignment explanation
Indices: 32208023--32208206 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
32208013 TGAATGATGT
* * * *
32208023 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32208063 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32208103 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
32208141 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32208182 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32208207 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32208228 original size:79 final size:79
Alignment explanation
Indices: 32208075--32208239 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32208065 GGACTAAGAT
* * **
32208075 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32208140 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32208154 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32208217 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32208233 CCGAAGG
1 CCGAAGG
32208240 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32210267 original size:16 final size:16
Alignment explanation
Indices: 32210217--32210274 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
32210207 AACCTCACTA
* * *
32210217 TCTATTGTTTTCACAA
1 TCTATAGTTTTCATAG
* *
32210233 TCTAGAGTTTTC-TCTG
1 TCTATAGTTTTCAT-AG
32210249 TCTATAGTTTTCATAG
1 TCTATAGTTTTCATAG
32210265 TCTATAGTTT
1 TCTATAGTTT
32210275 CACATCTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
16 32 0.97
17 1 0.03
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.52
Consensus pattern (16 bp):
TCTATAGTTTTCATAG
Found at i:32212076 original size:31 final size:31
Alignment explanation
Indices: 32212038--32212101 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
32212028 ATCTAGCTTT
32212038 TGATAATCTAAAAAACATAGGAAAGAAACTA
1 TGATAATCTAAAAAACATAGGAAAGAAACTA
32212069 TGATAATCTAAAAAACATAGGAAAGAAACTA
1 TGATAATCTAAAAAACATAGGAAAGAAACTA
32212100 TG
1 TG
32212102 TAAGCACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.20
Consensus pattern (31 bp):
TGATAATCTAAAAAACATAGGAAAGAAACTA
Found at i:32215156 original size:16 final size:16
Alignment explanation
Indices: 32215128--32215168 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
32215118 TTGTTTTAAT
32215128 TATA-ATATA-ACATA
1 TATATATATATACATA
32215142 TATATATATATACATA
1 TATATATATATACATA
*
32215158 TATATACATAT
1 TATATATATAT
32215169 TTCATATTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.17
15 5 0.21
16 15 0.62
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATATATATACATA
Found at i:32215158 original size:10 final size:10
Alignment explanation
Indices: 32215139--32215168 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
32215129 ATAATATAAC
*
32215139 ATATATATAT
1 ATATACATAT
32215149 ATATACATAT
1 ATATACATAT
32215159 ATATACATAT
1 ATATACATAT
32215169 TTCATATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATACATAT
Found at i:32222230 original size:11 final size:11
Alignment explanation
Indices: 32222214--32222238 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32222204 TATATTACGA
32222214 CACATATTAAT
1 CACATATTAAT
32222225 CACATATTAAT
1 CACATATTAAT
32222236 CAC
1 CAC
32222239 TTTCAGTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (11 bp):
CACATATTAAT
Found at i:32231722 original size:20 final size:20
Alignment explanation
Indices: 32231699--32231752 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
32231689 TAATTTGTCT
*
32231699 TGTCTTAATTAAATTAAATG
1 TGTCTTAATTAAATTAAATA
* ** *
32231719 TGTCTTGATTTTATTAAGTA
1 TGTCTTAATTAAATTAAATA
32231739 TGTCTTAAATTAAA
1 TGTCTT-AATTAAA
32231753 ACATGAATTA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.35, C:0.06, G:0.11, T:0.48
Consensus pattern (20 bp):
TGTCTTAATTAAATTAAATA
Found at i:32241015 original size:51 final size:51
Alignment explanation
Indices: 32240876--32241064 Score: 185
Period size: 51 Copynumber: 3.8 Consensus size: 51
32240866 CTATTATCAT
* * *
32240876 TCGATACACAT--T-GCCTTCACATAGTACTACACACGTAATCA-AGTTT-
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCATAATTTA
* * *
32240922 TACGGTCCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTTT-
1 T-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCATAA--TTTA
* * * * * *
32240974 TTGGTACACATAGTAGCCTTCACTTAGTACTACGCATGTGACCATTATTTA
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCATAATTTA
*
32241025 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
32241065 TTCATCGATA
Statistics
Matches: 116, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
46 1 0.01
47 7 0.06
49 1 0.01
50 31 0.27
51 71 0.61
52 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCATAATTTA
Found at i:32260279 original size:82 final size:82
Alignment explanation
Indices: 32260183--32260347 Score: 330
Period size: 82 Copynumber: 2.0 Consensus size: 82
32260173 ACAAAAATGA
32260183 ACAGCCCCCAATGTGAAAGGAATGTTCTGTTGGTGTGAACAGCCTTTAAAAGAGCTTTGGGCAGC
1 ACAGCCCCCAATGTGAAAGGAATGTTCTGTTGGTGTGAACAGCCTTTAAAAGAGCTTTGGGCAGC
32260248 CGAATGTTCATTCTTGG
66 CGAATGTTCATTCTTGG
32260265 ACAGCCCCCAATGTGAAAGGAATGTTCTGTTGGTGTGAACAGCCTTTAAAAGAGCTTTGGGCAGC
1 ACAGCCCCCAATGTGAAAGGAATGTTCTGTTGGTGTGAACAGCCTTTAAAAGAGCTTTGGGCAGC
32260330 CGAATGTTCATTCTTGG
66 CGAATGTTCATTCTTGG
32260347 A
1 A
32260348 GAGTTGGAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (82 bp):
ACAGCCCCCAATGTGAAAGGAATGTTCTGTTGGTGTGAACAGCCTTTAAAAGAGCTTTGGGCAGC
CGAATGTTCATTCTTGG
Found at i:32260745 original size:9 final size:9
Alignment explanation
Indices: 32260731--32260755 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32260721 TATTAGCTTA
32260731 AACTAAATT
1 AACTAAATT
32260740 AACTAAATT
1 AACTAAATT
32260749 AACTAAA
1 AACTAAA
32260756 ATTTATTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (9 bp):
AACTAAATT
Found at i:32262362 original size:25 final size:27
Alignment explanation
Indices: 32262302--32262363 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
32262292 CCAGGTAAGG
*
32262302 CTTCTTCTCCTTCTTCCATTCTTCATTC
1 CTTC-TCTTCTTCTTCCATTCTTCATTC
*
32262330 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCTTCCATTCTTCATTC
32262353 CTTCTCTTCTT
1 CTTCTCTTCTT
32262364 AGCATATTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 21 0.70
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.35, G:0.02, T:0.58
Consensus pattern (27 bp):
CTTCTCTTCTTCTTCCATTCTTCATTC
Found at i:32265569 original size:20 final size:20
Alignment explanation
Indices: 32265546--32265592 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32265536 GGGTTAAGAT
*
32265546 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
32265566 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
32265586 TGAGCTG
1 TGAGCTG
32265593 GAAACAAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:32266741 original size:21 final size:21
Alignment explanation
Indices: 32266715--32266769 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
32266705 ACCGCTGTTT
*
32266715 CTAATCTCACTGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
*
32266737 C-AATCTTACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
32266757 CTAATCTCACCGC
1 CTAATCTCACCGC
32266770 CACTGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:32267782 original size:13 final size:13
Alignment explanation
Indices: 32267764--32267790 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32267754 TTTTCTATAG
32267764 GTACACCACATTT
1 GTACACCACATTT
32267777 GTACACCACATTT
1 GTACACCACATTT
32267790 G
1 G
32267791 GACGTCCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (13 bp):
GTACACCACATTT
Found at i:32274687 original size:15 final size:16
Alignment explanation
Indices: 32274667--32274698 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
32274657 AGAAAATGAA
32274667 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
32274682 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
32274698 A
1 A
32274699 GTGTGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:32275156 original size:16 final size:15
Alignment explanation
Indices: 32275137--32275166 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32275127 AGTATCAATT
32275137 TTTGATTGGTGATGAC
1 TTTGATTGG-GATGAC
32275153 TTTGATTGGGATGA
1 TTTGATTGGGATGA
32275167 TGGTTTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
TTTGATTGGGATGAC
Found at i:32278383 original size:19 final size:20
Alignment explanation
Indices: 32278355--32278397 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
32278345 GTGAAAACAC
32278355 AAAAGAAAAGAAAAC-TGAGA
1 AAAAGAAAAGAAAACATGA-A
32278375 AAAAG-AAAGAAAACATGAA
1 AAAAGAAAAGAAAACATGAA
32278394 AAAA
1 AAAA
32278398 AAGTGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAGAAAACATGAA
Found at i:32278398 original size:20 final size:20
Alignment explanation
Indices: 32278355--32278398 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32278345 GTGAAAACAC
*
32278355 AAAAGAAAAGAAAACTGAGA
1 AAAAGAAAAGAAAACTGAAA
32278375 AAAAG-AAAGAAAACATGAAA
1 AAAAGAAAAGAAAAC-TGAAA
32278395 AAAA
1 AAAA
32278399 AGTGAAAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAGAAAACTGAAA
Found at i:32278451 original size:18 final size:20
Alignment explanation
Indices: 32278414--32278457 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
32278404 AAAGGAAGCG
32278414 AGAAAAGAGAGAGATGAAAA
1 AGAAAAGAGAGAGATGAAAA
*
32278434 AGAAAA-AGTGAG-TGAAAA
1 AGAAAAGAGAGAGATGAAAA
*
32278452 ACAAAA
1 AGAAAA
32278458 TGTATTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 5 0.23
20 6 0.27
ACGTcount: A:0.66, C:0.02, G:0.25, T:0.07
Consensus pattern (20 bp):
AGAAAAGAGAGAGATGAAAA
Found at i:32283103 original size:13 final size:13
Alignment explanation
Indices: 32283085--32283109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32283075 TAATGGTATA
32283085 TTGAATCCATGAC
1 TTGAATCCATGAC
32283098 TTGAATCCATGA
1 TTGAATCCATGA
32283110 AAATTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:32284605 original size:47 final size:47
Alignment explanation
Indices: 32284523--32284785 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
32284513 TTAAACCCAT
*
32284523 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32284572 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32284619 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
32284666 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
32284713 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32284760 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
32284786 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 184 0.94
49 11 0.06
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32286844 original size:43 final size:43
Alignment explanation
Indices: 32286796--32286941 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
32286786 TTGGTTTTCA
*
32286796 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
32286839 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
32286882 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
32286925 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
32286942 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:32286958 original size:29 final size:29
Alignment explanation
Indices: 32286923--32286996 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32286913 GTTGTGAGAT
* *
32286923 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32286952 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32286981 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32286997 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32287488 original size:40 final size:40
Alignment explanation
Indices: 32287439--32287535 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
32287429 TAAATCTGGG
* *
32287439 CTAAATTCCGAAGAGCATTCGTGCTAGTGAGGTATCCGGA
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGAGATATCCGGA
* ** *
32287479 CTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATATCCGGG
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGAGATATCCGGA
* *
32287519 CTAGGTCCCGAAGAGCA
1 CTAAGTTCCGAAGAGCA
32287536 ATCATGCTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CTAAGTTCCGAAGAGCATTCGTGCTAGTGAGATATCCGGA
Found at i:32287544 original size:40 final size:40
Alignment explanation
Indices: 32287471--32287547 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
32287461 GCTAGTGAGG
* * *
32287471 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
32287511 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
32287548 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:32290025 original size:13 final size:13
Alignment explanation
Indices: 32290007--32290031 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32289997 TAATGGTATA
32290007 TTGAATCCATGAC
1 TTGAATCCATGAC
32290020 TTGAATCCATGA
1 TTGAATCCATGA
32290032 AAATTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:32291527 original size:47 final size:47
Alignment explanation
Indices: 32291445--32291754 Score: 458
Period size: 47 Copynumber: 6.6 Consensus size: 47
32291435 TTAAACCCAT
*
32291445 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32291494 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32291541 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
32291588 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
32291635 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
32291682 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32291729 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
32291755 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 231 0.95
49 11 0.05
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32294260 original size:13 final size:12
Alignment explanation
Indices: 32294215--32294259 Score: 81
Period size: 12 Copynumber: 3.7 Consensus size: 12
32294205 TAGTTTCTTC
32294215 AAAAAAAATTCGA
1 AAAAAAAATTC-A
32294228 AAAAAAAATTCA
1 AAAAAAAATTCA
32294240 AAAAAAAATTCA
1 AAAAAAAATTCA
32294252 AAAAAAAA
1 AAAAAAAA
32294260 AATTGGTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 21 0.66
13 11 0.34
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:32302829 original size:21 final size:21
Alignment explanation
Indices: 32302786--32302831 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
32302776 TTTACATAGG
**
32302786 AATTAAATCATAAAGTCTAAA
1 AATTAAATCATAAAGAATAAA
*
32302807 AATTAAATCATAAAGAATTAA
1 AATTAAATCATAAAGAATAAA
32302828 AATT
1 AATT
32302832 TTACAAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (21 bp):
AATTAAATCATAAAGAATAAA
Found at i:32304912 original size:23 final size:24
Alignment explanation
Indices: 32304877--32304921 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32304867 TGAGTGAAAA
32304877 TTCTCTTTGAGTTCTTTAAGAATT
1 TTCTCTTTGAGTTCTTTAAGAATT
* *
32304901 TTCTC-TTGAGTTTTTTTAGAA
1 TTCTCTTTGAGTTCTTTAAGAA
32304922 GTAGTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.56
Consensus pattern (24 bp):
TTCTCTTTGAGTTCTTTAAGAATT
Found at i:32314828 original size:21 final size:21
Alignment explanation
Indices: 32314799--32314838 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32314789 TTAATGAGCT
*
32314799 GAAATTTCCAGAAAAATTCAA
1 GAAAATTCCAGAAAAATTCAA
*
32314820 GAAAATTCCAGGAAAATTC
1 GAAAATTCCAGAAAAATTC
32314839 TCCAGCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (21 bp):
GAAAATTCCAGAAAAATTCAA
Found at i:32317468 original size:40 final size:40
Alignment explanation
Indices: 32317377--32317546 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
32317367 TCCTCGTTCA
* * * * *
32317377 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32317416 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32317456 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
32317496 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32317536 AAGGCCTTCGG
1 AATGCCTTCGG
32317547 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32325384 original size:40 final size:40
Alignment explanation
Indices: 32325293--32325462 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
32325283 TCCTCGTTCA
* * * * *
32325293 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32325332 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32325372 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
32325412 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCACACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32325452 AAGGCCTTCGG
1 AATGCCTTCGG
32325463 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 19, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
39 32 0.29
40 79 0.71
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32325394 original size:79 final size:80
Alignment explanation
Indices: 32325293--32325439 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
32325283 TCCTCGTTCA
* * * * *
32325293 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-CATGCCTTCGGGACGTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGGAT
32325357 TTAACAACTCGCACG
66 TTAACAACTCGCACG
* * *
32325372 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGGAT
32325437 TTA
66 TTA
32325440 GTATCTCACA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 34 0.58
80 25 0.42
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACGAATGCCCTCGGGACGTAACCCGGAT
TTAACAACTCGCACG
Done.