Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 102 of 222
Found at i:32328122 original size:12 final size:12
Alignment explanation
Indices: 32328089--32328169 Score: 53
Period size: 12 Copynumber: 6.8 Consensus size: 12
32328079 TTTTCACTCG
32328089 ATTTC-TTTTCA
1 ATTTCTTTTTCA
** *
32328100 AGCTCTCTTTCA
1 ATTTCTTTTTCA
32328112 ATTTCTTTTTCCA
1 ATTTCTTTTT-CA
*
32328125 CTCTTTCTTTTTC-
1 --ATTTCTTTTTCA
*
32328138 --TTCTCTTTCA
1 ATTTCTTTTTCA
32328148 ATTTCTTTTTCA
1 ATTTCTTTTTCA
*
32328160 ATCTCTTTTT
1 ATTTCTTTTT
32328170 GGTTTTCACT
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
9 8 0.15
11 3 0.06
12 30 0.57
13 2 0.04
14 1 0.02
15 9 0.17
ACGTcount: A:0.12, C:0.25, G:0.01, T:0.62
Consensus pattern (12 bp):
ATTTCTTTTTCA
Found at i:32328130 original size:21 final size:20
Alignment explanation
Indices: 32328104--32328159 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
32328094 TTTTCAAGCT
32328104 CTCTTTCAATTTCTTTTTCCA
1 CTCTTTCAATTTCTTTTT-CA
*
32328125 CTCTTTC--TTT-TTCTT--
1 CTCTTTCAATTTCTTTTTCA
32328140 CTCTTTCAATTTCTTTTTCA
1 CTCTTTCAATTTCTTTTTCA
32328160 ATCTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 7 0.25
17 3 0.11
18 8 0.29
19 3 0.11
21 7 0.25
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (20 bp):
CTCTTTCAATTTCTTTTTCA
Found at i:32333317 original size:21 final size:21
Alignment explanation
Indices: 32333272--32333334 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
32333262 TTTGAACCAT
* *
32333272 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
32333294 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
32333315 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
32333335 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:32335460 original size:13 final size:13
Alignment explanation
Indices: 32335442--32335503 Score: 81
Period size: 13 Copynumber: 4.8 Consensus size: 13
32335432 TAGTTTCTCG
*
32335442 AAAAAAAACTCGA
1 AAAAAAAATTCGA
*
32335455 AAAAAAAATTCAA
1 AAAAAAAATTCGA
32335468 AAAAAAAATTTCG-
1 AAAAAAAA-TTCGA
*
32335481 AAAAAAAATTCAA
1 AAAAAAAATTCGA
32335494 AAAAAAAATT
1 AAAAAAAATT
32335504 TGGTTTCCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
12 3 0.07
13 37 0.86
14 3 0.07
ACGTcount: A:0.73, C:0.08, G:0.03, T:0.16
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:32335484 original size:26 final size:27
Alignment explanation
Indices: 32335442--32335504 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
32335432 TAGTTTCTCG
*
32335442 AAAAAAAA-CTCGAAAAAAAAATTCAA
1 AAAAAAAATTTCGAAAAAAAAATTCAA
32335468 AAAAAAAATTTCG-AAAAAAAATTCAA
1 AAAAAAAATTTCGAAAAAAAAATTCAA
32335494 AAAAAAAATTT
1 AAAAAAAATTT
32335505 GGTTTCCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 32 0.91
27 3 0.09
ACGTcount: A:0.71, C:0.08, G:0.03, T:0.17
Consensus pattern (27 bp):
AAAAAAAATTTCGAAAAAAAAATTCAA
Found at i:32335561 original size:15 final size:15
Alignment explanation
Indices: 32335541--32335598 Score: 98
Period size: 16 Copynumber: 3.7 Consensus size: 15
32335531 GATATCAAGT
32335541 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
32335556 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
32335571 TGAAAAAAAAAATTTCG
1 TG-AAAAAAAAA-TTCG
32335588 TGAAAAAAAAA
1 TGAAAAAAAAA
32335599 AGAAGAAGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
15 17 0.41
16 18 0.44
17 6 0.15
ACGTcount: A:0.64, C:0.05, G:0.12, T:0.19
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:32335565 original size:17 final size:17
Alignment explanation
Indices: 32335543--32335599 Score: 91
Period size: 17 Copynumber: 3.5 Consensus size: 17
32335533 TATCAAGTTG
32335543 AAAAAAAAATTCGTG--
1 AAAAAAAAATTCGTGAA
32335558 AAAAAAAAATTCGTGAA
1 AAAAAAAAATTCGTGAA
*
32335575 AAAAAAAATTTCGTGAA
1 AAAAAAAAATTCGTGAA
32335592 AAAAAAAA
1 AAAAAAAA
32335600 GAAGAAGCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
15 15 0.38
17 24 0.62
ACGTcount: A:0.67, C:0.05, G:0.11, T:0.18
Consensus pattern (17 bp):
AAAAAAAAATTCGTGAA
Found at i:32340929 original size:11 final size:11
Alignment explanation
Indices: 32340913--32340945 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
32340903 TTGAAGAGCC
32340913 ACATGGTGTGA
1 ACATGGTGTGA
*
32340924 ACATGG-CTGA
1 ACATGGTGTGA
32340934 ACATGGTGTGA
1 ACATGGTGTGA
32340945 A
1 A
32340946 TGTCTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.24
Consensus pattern (11 bp):
ACATGGTGTGA
Found at i:32344434 original size:29 final size:30
Alignment explanation
Indices: 32344395--32344456 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
32344385 TACAAACTCT
32344395 TTTTTCATTTTCATT-ACTCGTCTCTTTTTC
1 TTTTTCATTTTCATTCACTC-TCTCTTTTTC
** *
32344425 TTTTTC-TTTTGTTTCACTCTCTTTTTTTC
1 TTTTTCATTTTCATTCACTCTCTCTTTTTC
32344454 TTT
1 TTT
32344457 CCTTTTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.06, C:0.21, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTTTCATTTTCATTCACTCTCTCTTTTTC
Found at i:32344449 original size:27 final size:27
Alignment explanation
Indices: 32344415--32344466 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
32344405 TCATTACTCG
32344415 TCTCTTTTTCTT-TTT-CTTTTGTTTCAC
1 TCTCTTTTT-TTCTTTCCTTTT-TTTCAC
32344442 TCTCTTTTTTTCTTTCCTTTTTTTC
1 TCTCTTTTTTTCTTTCCTTTTTTTC
32344467 TACATTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.09
27 16 0.70
28 5 0.22
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (27 bp):
TCTCTTTTTTTCTTTCCTTTTTTTCAC
Found at i:32344477 original size:28 final size:29
Alignment explanation
Indices: 32344410--32344466 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
32344400 CATTTTCATT
* *
32344410 ACTCGTCTCTTTTTCTTTTTCTTTTGTTTC
1 ACTC-TCTTTTTTTCTTTTCCTTTTGTTTC
32344440 ACTCTCTTTTTTTC-TTTCCTTTT-TTTC
1 ACTCTCTTTTTTTCTTTTCCTTTTGTTTC
32344467 TACATTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.16
28 8 0.32
29 9 0.36
30 4 0.16
ACGTcount: A:0.04, C:0.25, G:0.04, T:0.68
Consensus pattern (29 bp):
ACTCTCTTTTTTTCTTTTCCTTTTGTTTC
Found at i:32346651 original size:10 final size:11
Alignment explanation
Indices: 32346623--32346651 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
32346613 CTTTCTCTTC
32346623 TTTTTTTTCAA
1 TTTTTTTTCAA
32346634 TTTTTTTT-AA
1 TTTTTTTTCAA
32346644 TTTTTTTT
1 TTTTTTTT
32346652 TCGAATTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:32347480 original size:11 final size:11
Alignment explanation
Indices: 32347464--32347496 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
32347454 TTGAAGAGCC
32347464 ACATGGTGTGA
1 ACATGGTGTGA
*
32347475 ACATGG-CTGA
1 ACATGGTGTGA
32347485 ACATGGTGTGA
1 ACATGGTGTGA
32347496 A
1 A
32347497 TGTCGTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.24
Consensus pattern (11 bp):
ACATGGTGTGA
Found at i:32350652 original size:19 final size:19
Alignment explanation
Indices: 32350630--32350667 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32350620 AACTAGCCAA
32350630 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
32350649 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
32350668 TTCTAAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (19 bp):
GGACAACTCAAGAGTCATT
Found at i:32363449 original size:40 final size:40
Alignment explanation
Indices: 32363302--32363571 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
32363292 ATAACCACAA
* * * *
32363302 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32363342 GCA-GAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32363381 GCACAATTGCCTT-GGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32363420 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
32363462 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32363502 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32363542 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
32363572 GTATTCAAAT
Statistics
Matches: 215, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
39 70 0.33
40 105 0.49
42 40 0.19
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32363504 original size:82 final size:80
Alignment explanation
Indices: 32363302--32363571 Score: 445
Period size: 82 Copynumber: 3.4 Consensus size: 80
32363292 ATAACCACAA
* * * * *
32363302 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA-GAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32363366 CGGATATATCAACTT
66 CGGATATATCAACTT
*
32363381 GCACAATTGCCTT-GGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
32363445 CGGATATATGTCAACTC
66 CGGATATA--TCAACTT
32363462 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32363527 CGGATATATCAACTT
66 CGGATATATCAACTT
32363542 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
32363572 GTATTCAAAT
Statistics
Matches: 180, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
78 26 0.14
79 41 0.23
80 36 0.20
81 18 0.10
82 59 0.33
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTT
Found at i:32368174 original size:107 final size:112
Alignment explanation
Indices: 32368003--32368219 Score: 374
Period size: 107 Copynumber: 2.0 Consensus size: 112
32367993 TTAGTGAGCC
*
32368003 CGAACGGCATCACCAAGAACTCGTAGTGACCGTACCTCGTTCTGAAAGTAGTTTTGGGTACGTCC
1 CGAACGGCATCACCAAGAACTCGTAGTGACCGTACCTCGTTCTGAAAGTAGTCTTGGGTACGTCC
32368068 GAATCTCGAATCCGCAACTGATAATAACCCGATCTCAAATCTATCTCA
66 GAATCTCGAATCCGCAACTGATAATAA-CCGATCTCAAATCTATCTCA
32368116 CGAAC-GCATCA-CAAGAACTCG-AGTGACCGTACC-CGTTCTGAAAGTAG-CTT-GGTACGTCC
1 CGAACGGCATCACCAAGAACTCGTAGTGACCGTACCTCGTTCTGAAAGTAGTCTTGGGTACGTCC
32368175 GAATCTCGAATCCGCAACTGATAATAACCGATCTCAAATCTATCT
66 GAATCTCGAATCCGCAACTGATAATAACCGATCTCAAATCTATCT
32368220 TTGAAAACAC
Statistics
Matches: 103, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
106 18 0.17
107 36 0.35
108 2 0.02
109 14 0.14
110 12 0.12
111 10 0.10
112 6 0.06
113 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (112 bp):
CGAACGGCATCACCAAGAACTCGTAGTGACCGTACCTCGTTCTGAAAGTAGTCTTGGGTACGTCC
GAATCTCGAATCCGCAACTGATAATAACCGATCTCAAATCTATCTCA
Found at i:32380749 original size:43 final size:43
Alignment explanation
Indices: 32380683--32380768 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
32380673 TTTATCCTAT
* *
32380683 AAAAAATAATTTAAAAAGAGGAGAAGATAATA-TTGGGTTGTTG
1 AAAAAATAATTTAAAAAGAGGAGAAAATAA-ACATGGGTTGTTG
*
32380726 AAAACATAATTTAAAAAGAGGAGAAAATAAACATGGGTTGTTG
1 AAAAAATAATTTAAAAAGAGGAGAAAATAAACATGGGTTGTTG
32380769 GATTTACCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.50, C:0.02, G:0.22, T:0.26
Consensus pattern (43 bp):
AAAAAATAATTTAAAAAGAGGAGAAAATAAACATGGGTTGTTG
Found at i:32383287 original size:27 final size:27
Alignment explanation
Indices: 32383249--32383490 Score: 250
Period size: 27 Copynumber: 9.3 Consensus size: 27
32383239 ATTCATGGGC
* *
32383249 AAATGACTGAAATACCCTCGGAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
32383276 AAATGATCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
32383303 AAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
32383330 AATTGACCAAAATACCCTCGAAGGGTGA
1 AAATGACCGAAATACCCTCGAAGGGT-A
*
32383358 AAA-GACCAAAATACCCTC-----G--
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
32383377 -AATGACCGAAATACCCCCAAATGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
32383403 AATTGATCGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * **
32383430 AAATGATCGAAATACCCCCGAAGCATA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
32383457 AAATGATCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
32383484 AAATGAC
1 AAATGAC
32383491 TGTTATACCC
Statistics
Matches: 185, Mismatches: 20, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
18 2 0.01
19 13 0.07
22 1 0.01
24 1 0.01
27 165 0.89
28 3 0.02
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGAAGGGTA
Found at i:32383399 original size:19 final size:19
Alignment explanation
Indices: 32383361--32383399 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
32383351 AGGGTGAAAA
* *
32383361 GACCAAAATACCCTCGAAT
1 GACCAAAATACCCCCAAAT
*
32383380 GACCGAAATACCCCCAAAT
1 GACCAAAATACCCCCAAAT
32383399 G
1 G
32383400 GTAAATTGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.33, G:0.13, T:0.13
Consensus pattern (19 bp):
GACCAAAATACCCCCAAAT
Found at i:32383425 original size:73 final size:73
Alignment explanation
Indices: 32383304--32383451 Score: 190
Period size: 73 Copynumber: 2.0 Consensus size: 73
32383294 CGAAGGGTAA
* * *
32383304 AATGACCAAAATACCCTCGAAGGGTAAATTGACCAAAATACCCTCGAAGGGTGAAAA-GACCAAA
1 AATGACCAAAATACCCCCAAAGGGTAAATTGACCAAAATACCCCCGAAGGGT-AAAATGACCAAA
*
32383368 ATACCCTCG
65 ATACCCCCG
* * * * * *
32383377 AATGACCGAAATACCCCCAAATGGTAAATTGATCGAAATACCCCCGAAGGGTAAAATGATCGAAA
1 AATGACCAAAATACCCCCAAAGGGTAAATTGACCAAAATACCCCCGAAGGGTAAAATGACCAAAA
32383442 TACCCCCG
66 TACCCCCG
32383450 AA
1 AA
32383452 GCATAAAATG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
72 4 0.06
73 60 0.94
ACGTcount: A:0.42, C:0.25, G:0.18, T:0.16
Consensus pattern (73 bp):
AATGACCAAAATACCCCCAAAGGGTAAATTGACCAAAATACCCCCGAAGGGTAAAATGACCAAAA
TACCCCCG
Found at i:32383452 original size:100 final size:100
Alignment explanation
Indices: 32383277--32383478 Score: 244
Period size: 100 Copynumber: 2.0 Consensus size: 100
32383267 CGGAGGGTAA
* * * * *
32383277 AATGATCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCGAAGGGTAAATTGACCAAAA
1 AATGACCGAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACCAAAA
* **
32383342 TACCCTCGAAGGGTGAAAA-GACCAAAATACCCTCG
66 TACCCCCGAAGCAT-AAAATGACCAAAATACCCTCG
* * * * * *
32383377 AATGACCGAAATACCCCCAAATGGTAAATTGATCGAAATACCCCCGAAGGGTAAAATGATCGAAA
1 AATGACCGAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACCAAAA
* *
32383442 TACCCCCGAAGCATAAAATGATCGAAATACCCTCG
66 TACCCCCGAAGCATAAAATGACCAAAATACCCTCG
32383477 AA
1 AA
32383479 GGGTAAAATG
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
99 4 0.05
100 81 0.95
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (100 bp):
AATGACCGAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACCAAAA
TACCCCCGAAGCATAAAATGACCAAAATACCCTCG
Found at i:32383700 original size:26 final size:26
Alignment explanation
Indices: 32383667--32383717 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32383657 GCCACATATA
*
32383667 CTATTACTGGTAGCT-TCGCTGCGATT
1 CTATTACTGGCAGCTCT-GCTGCGATT
32383693 CTATTACTGGCAGCTCTGCTGCGAT
1 CTATTACTGGCAGCTCTGCTGCGAT
32383718 ATTGGTGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (26 bp):
CTATTACTGGCAGCTCTGCTGCGATT
Found at i:32389996 original size:60 final size:60
Alignment explanation
Indices: 32389921--32390149 Score: 266
Period size: 60 Copynumber: 3.8 Consensus size: 60
32389911 TCAAAGATTT
* *
32389921 GCCAGAAAGGCTTTCCTTTCTAGAGATTTTCCACAATGGCATCCTTTTCATTCAGTACTC
1 GCCATAAAGGCTTTCCTTTCTAGAGATTTTCCACAAAGGCATCCTTTTCATTCAGTACTC
* * * * * *
32389981 GCCATAAAGGCTTTCCTTT-TGAGAGATTTTCCATAAATGCATTCTTTTCATACATTAATC
1 GCCATAAAGGCTTTCCTTTCT-AGAGATTTTCCACAAAGGCATCCTTTTCATTCAGTACTC
* * * * * *
32390041 GCC-TCAAAGGCTTTCTTTTCCATAGGTTTGCCACAAAGGTATCCTTTTCATTCAGTACTC
1 GCCAT-AAAGGCTTTCCTTTCTAGAGATTTTCCACAAAGGCATCCTTTTCATTCAGTACTC
* *
32390101 GCCA-AAAGGTTTTCCTTTTTAGAGATTTTCCACAAAGGCATCCTATTTC
1 GCCATAAAGGCTTTCCTTTCTAGAGATTTTCCACAAAGGCATCCT-TTTC
32390150 TATCATGTTT
Statistics
Matches: 136, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
59 34 0.25
60 102 0.75
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (60 bp):
GCCATAAAGGCTTTCCTTTCTAGAGATTTTCCACAAAGGCATCCTTTTCATTCAGTACTC
Found at i:32390101 original size:120 final size:119
Alignment explanation
Indices: 32389926--32390141 Score: 324
Period size: 120 Copynumber: 1.8 Consensus size: 119
32389916 GATTTGCCAG
* * *
32389926 AAAGGCTTTCCTTTCTAGAGATTTTCCACAATGGCATCCTTTTCATTCAGTACTCGCCATAAAGG
1 AAAGGCTTTCCTTTCCAGAGATTTGCCACAAAGGCATCCTTTTCATTCAGTACTCGCCA-AAAGG
* *
32389991 CTTTCCTTTTGAGAGATTTTCCATAAATGCATTCTTTTCATACATTAATCGCCTC
65 CTTTCCTTTTGAGAGATTTTCCACAAAGGCATTCTTTTCATACATTAATCGCCTC
* * * * *
32390046 AAAGGCTTTCTTTTCCATAGGTTTGCCACAAAGGTATCCTTTTCATTCAGTACTCGCCAAAAGGT
1 AAAGGCTTTCCTTTCCAGAGATTTGCCACAAAGGCATCCTTTTCATTCAGTACTCGCCAAAAGGC
*
32390111 TTTCCTTTTTAGAGATTTTCCACAAAGGCAT
66 TTTCCTTTTGAGAGATTTTCCACAAAGGCAT
32390142 CCTATTTCTA
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 33 0.39
120 52 0.61
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (119 bp):
AAAGGCTTTCCTTTCCAGAGATTTGCCACAAAGGCATCCTTTTCATTCAGTACTCGCCAAAAGGC
TTTCCTTTTGAGAGATTTTCCACAAAGGCATTCTTTTCATACATTAATCGCCTC
Found at i:32390324 original size:49 final size:50
Alignment explanation
Indices: 32390261--32390357 Score: 115
Period size: 50 Copynumber: 2.0 Consensus size: 50
32390251 TTAGTTCTTC
** * * * *
32390261 CCATATGATGCCATAACCCACTAG-TTTGGTCTTATATGATATGGTGTTT
1 CCATATGACACCATAACCCACCAGCTATGGTCTTACACGATATGGTGTTT
* *
32390310 CCATATGACACCATAGCTCACCAGCTATGGTCTTACACGATATGGTGT
1 CCATATGACACCATAACCCACCAGCTATGGTCTTACACGATATGGTGT
32390358 CGTGGACTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
49 19 0.49
50 20 0.51
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (50 bp):
CCATATGACACCATAACCCACCAGCTATGGTCTTACACGATATGGTGTTT
Found at i:32391865 original size:29 final size:29
Alignment explanation
Indices: 32391831--32391903 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
32391821 TTAGATATTA
* *
32391831 TTAAATATGTCCTAATTAGTTTAGGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
32391860 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGTGTT
32391889 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
32391904 ACTAATACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGTGTT
Found at i:32393098 original size:14 final size:14
Alignment explanation
Indices: 32393079--32393121 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
32393069 GTGAGTTTGT
32393079 AAAAAAATTTGAAA
1 AAAAAAATTTGAAA
32393093 AAAAAAATTTGAAA
1 AAAAAAATTTGAAA
*
32393107 AAAAAAATTCGAAA
1 AAAAAAATTTGAAA
32393121 A
1 A
32393122 TTCAAGAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (14 bp):
AAAAAAATTTGAAA
Found at i:32395696 original size:20 final size:20
Alignment explanation
Indices: 32395670--32395753 Score: 105
Period size: 20 Copynumber: 4.1 Consensus size: 20
32395660 CCATGTTCAG
32395670 GCTATGGCTCAACATAGGCT
1 GCTATGGCTCAACATAGGCT
* *
32395690 ACTATGGCTCAACACAGGGGCT
1 GCTATGGCTCAACATA--GGCT
*
32395712 GCTATGGCTCAACATAGGCC
1 GCTATGGCTCAACATAGGCT
* *
32395732 GCCACGGCTCAACATAGGCT
1 GCTATGGCTCAACATAGGCT
32395752 GC
1 GC
32395754 CACAGACTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
20 36 0.67
22 18 0.33
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (20 bp):
GCTATGGCTCAACATAGGCT
Found at i:32396962 original size:16 final size:17
Alignment explanation
Indices: 32396941--32396973 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32396931 CACATTGAAG
32396941 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
32396957 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
32396974 CTTCTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:32398063 original size:27 final size:27
Alignment explanation
Indices: 32398033--32398131 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
32398023 TACCGTTCAG
*
32398033 GGGTATTTTAGTAATTTTACAAATCAA
1 GGGTATTTTAGTAATTTTACAAATCGA
* *
32398060 GGGTACTTTT-GTAATTTCACGAATCGA
1 GGGTA-TTTTAGTAATTTTACAAATCGA
* ** * *
32398087 GGGTACTTCGGTAATTTTACAAGTTGA
1 GGGTATTTTAGTAATTTTACAAATCGA
32398114 GGGTATTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
32398132 GTAAACCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 2 0.03
27 52 0.90
28 4 0.07
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATCGA
Found at i:32398305 original size:17 final size:18
Alignment explanation
Indices: 32398279--32398313 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32398269 AACTTATCCG
*
32398279 ATTGGGCCCACA-GGCCC
1 ATTGGCCCCACATGGCCC
32398296 ATTGGCCCCACATGGCCC
1 ATTGGCCCCACATGGCCC
32398314 CTTTCAGCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.17, C:0.43, G:0.26, T:0.14
Consensus pattern (18 bp):
ATTGGCCCCACATGGCCC
Found at i:32400520 original size:27 final size:27
Alignment explanation
Indices: 32400490--32400711 Score: 304
Period size: 27 Copynumber: 8.2 Consensus size: 27
32400480 TAACAGTTAC
*
32400490 TTTACCCTATGGGGGTATTTTGATCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
32400517 TTTACCCTATGGGGGTATTTCGATCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
*
32400544 TTTACCCTATGGGGGTATTTCGGTCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
* * * *
32400571 TCTACCTTATGGGGGTATTTTGGTCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
* *
32400598 TTTACCCTATAGGAGTATTTC-AGTCAT
1 TTTACCCTATGGGGGTATTTCGA-TCAT
* *
32400625 TTTACCCTATGGAGGTATTTCAATCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
*
32400652 TCTACCCTATGGGGGTATTTC-AGTCAT
1 TTTACCCTATGGGGGTATTTCGA-TCAT
*
32400679 TTTACCCTATGGAGGTATTTCGATCAT
1 TTTACCCTATGGGGGTATTTCGATCAT
32400706 TTTACC
1 TTTACC
32400712 TATTTTGGGG
Statistics
Matches: 173, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 170 0.98
28 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTACCCTATGGGGGTATTTCGATCAT
Found at i:32405137 original size:50 final size:50
Alignment explanation
Indices: 32405056--32405248 Score: 251
Period size: 50 Copynumber: 3.8 Consensus size: 50
32405046 ATTTGGGTAA
* *
32405056 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* **
32405106 AGAGGTCCCATGTAAGACCATTTCTAAGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
32405156 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32405206 AGAACATCCCATGTAAGACCATGTCTGGGACATGACTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32405249 TGTTATTATC
Statistics
Matches: 122, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 89 0.73
51 33 0.27
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32408913 original size:47 final size:47
Alignment explanation
Indices: 32408691--32409334 Score: 883
Period size: 47 Copynumber: 13.4 Consensus size: 47
32408681 CAGCCAAGAG
* * *
32408691 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32408738 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32408787 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32408838 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
32408889 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32408936 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32408983 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
32409034 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
32409081 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
32409128 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
32409175 AGTGTTTATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
32409222 AGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
32409269 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
32409316 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32409335 TCCCGAAAGG
Statistics
Matches: 549, Mismatches: 36, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
47 368 0.67
49 43 0.08
51 134 0.24
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:32409001 original size:145 final size:145
Alignment explanation
Indices: 32408693--32409275 Score: 931
Period size: 145 Copynumber: 4.0 Consensus size: 145
32408683 GCCAAGAGAG
* *
32408693 TGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAA
* * *
32408758 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCTAATGGCCGA
64 GGCCTAATAGCCGACGTGATGAATGTGAAA--G--TGTATATATGTGATAAGGCCTAATAGCCGA
*
32408823 TGTGATGAATGTGAAAGTATA
125 TGTGATGAATGTGAAAGTGTA
*
32408844 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
32408909 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
32408974 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
*
32408989 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
32409054 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
32409119 GAATGTGAAA--G--
131 GAATGTGAAAGTGTA
* *
32409130 TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * *
32409195 CCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGAT
66 CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
32409260 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
32409275 T
1 T
32409276 ATATGTGACA
Statistics
Matches: 411, Mismatches: 17, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 131 0.32
143 2 0.00
145 189 0.46
147 1 0.00
149 39 0.09
151 49 0.12
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (145 bp):
TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
GAATGTGAAAGTGTA
Found at i:32411453 original size:43 final size:43
Alignment explanation
Indices: 32411351--32411453 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
32411341 TTGGTTTTCA
*
32411351 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
32411394 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
32411437 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
32411454 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:32411470 original size:29 final size:29
Alignment explanation
Indices: 32411435--32411508 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32411425 GTTGTGAGAT
* *
32411435 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32411464 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32411493 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32411509 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32411946 original size:40 final size:40
Alignment explanation
Indices: 32411823--32412085 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
32411813 TTGAATGATG
* *
32411823 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * * *
32411863 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
32411903 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
32411943 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
32411983 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
32412023 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
32412063 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
32412086 ATCATGCTGG
Statistics
Matches: 192, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
40 174 0.91
41 18 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:32415465 original size:47 final size:47
Alignment explanation
Indices: 32415292--32415878 Score: 767
Period size: 47 Copynumber: 12.4 Consensus size: 47
32415282 CAGCCAAGAG
* *
32415292 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32415339 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415390 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415441 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415488 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32415539 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415586 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415633 AGTGTATCTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32415680 AGTG----TA----ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
**
32415719 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32415766 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
32415813 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32415860 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32415879 TCCCGAAAGG
Statistics
Matches: 490, Mismatches: 32, Indels: 36
0.88 0.06 0.06
Matches are distributed among these distances:
39 37 0.08
43 4 0.01
47 310 0.63
49 4 0.01
51 135 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32415496 original size:98 final size:95
Alignment explanation
Indices: 32415294--32415827 Score: 757
Period size: 98 Copynumber: 5.6 Consensus size: 95
32415284 GCCAAGAGAG
* *
32415294 TGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGAT
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGAT
32415359 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATA
62 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG---A
*
32415396 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
32415461 CCTAATAGCCGATGTGATGAATGTGAAAGTGTA
66 CCTAATGGCCGATGTGATGAATGTGAAA--G-A
*
32415494 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* *
32415559 CCTAATAGCCGACGTGATGAATGTGAAAG-
66 CCTAATGGCCGATGTGATGAATGTGAAAGA
* * * *
32415588 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATCTATGTAATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
32415653 CCTAATGGCCGATGTGATGAATGTG-AA-A
66 CCTAATGGCCGATGTGATGAATGTGAAAGA
*
32415681 -G------TGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
**
32415739 CCTAATGGCCGATGCAATGAATGTGAAAG-
66 CCTAATGGCCGATGTGATGAATGTGAAAGA
* *
32415768 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32415828 CAGGGCCGAG
Statistics
Matches: 401, Mismatches: 19, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
86 76 0.19
87 2 0.00
88 1 0.00
92 1 0.00
93 2 0.00
94 134 0.33
96 1 0.00
98 138 0.34
100 2 0.00
102 44 0.11
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (95 bp):
TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGA
Found at i:32415740 original size:133 final size:133
Alignment explanation
Indices: 32415404--32415818 Score: 641
Period size: 133 Copynumber: 3.0 Consensus size: 133
32415394 TATGTATATA
32415404 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
1 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
*
32415469 CCGATGTGATGAATGTGAAAGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
66 CCGATGTGATGAATGTGAAA--G--TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAAT
32415534 GTGAAAG
127 GTGAAAG
*
32415541 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TG--TA------ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
*
32415606 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATCTATGTAATAAGGCCTAATGGCCGATGTGAT
58 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGAT
32415671 GAATGTGAAAG
123 GAATGTGAAAG
* * *
32415682 TGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
** *
32415747 CCGATGCAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGA
32415812 AAG
131 AAG
32415815 TGTA
1 TGTA
32415819 TATATGTGAC
Statistics
Matches: 259, Mismatches: 11, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
133 125 0.48
137 2 0.01
139 4 0.02
141 47 0.18
143 1 0.00
145 80 0.31
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (133 bp):
TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAG
Found at i:32415859 original size:180 final size:180
Alignment explanation
Indices: 32415301--32415863 Score: 732
Period size: 180 Copynumber: 3.0 Consensus size: 180
32415291 GAGTGTATAT
32415301 GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATAAGGCCT
1 GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TGTATATATGTGATAAGGCCT
*
32415366 AATGGCCGATGTGATGAATGTGAAAGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGA
62 AATGGCCGATGTGATGAATGTGAAAG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGA
* * *
32415431 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATG
123 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-A-ATG-T-AATG-G--A-TG--TG
32415496 TATATA
178 -A-A-A
* * *
32415502 -TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
32415566 GCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * * * *
32415631 AAAGTGTATCTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
131 AAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTAATGGATGTGAAA
32415681 GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
** *
32415746 GCCGATGCAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * * * *
32415811 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAAA
131 AAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTAATGGATGTGAAA
32415861 GTG
1 GTG
32415864 CATAAATGTG
Statistics
Matches: 329, Mismatches: 32, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
179 1 0.00
180 165 0.50
181 1 0.00
182 2 0.01
184 2 0.01
185 1 0.00
188 3 0.01
189 1 0.00
190 2 0.01
192 69 0.21
196 44 0.13
198 1 0.00
200 37 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (180 bp):
GTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTAATGGATGTGAAA
Found at i:32421780 original size:17 final size:17
Alignment explanation
Indices: 32421758--32421793 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32421748 CAAGCATACA
*
32421758 AAACATAATCCTCAACT
1 AAACATAATCCTAAACT
32421775 AAACATAATCCTAAACT
1 AAACATAATCCTAAACT
32421792 AA
1 AA
32421794 GTTGTCATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (17 bp):
AAACATAATCCTAAACT
Found at i:32427820 original size:45 final size:45
Alignment explanation
Indices: 32427751--32427839 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
32427741 AATAGATACT
* * *
32427751 CGGTGGATTCAGCACATAGAAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTC
*
32427796 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGT
32427840 TTGGTTCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTC
Found at i:32433087 original size:50 final size:50
Alignment explanation
Indices: 32432974--32433147 Score: 195
Period size: 50 Copynumber: 3.5 Consensus size: 50
32432964 GATAATAACA
* * * ** *
32432974 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
* * * * *
32433025 TGCCCATTCCATGTCCTAGACATGGTGTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
32433075 TACCAATGCCATGTCCCAGGCATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
32433125 TGCCAACGCCATGTCCCAGACAT
1 TGCCAATGCCATGTCCCAGACAT
32433148 CAATTTAGCC
Statistics
Matches: 100, Mismatches: 23, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
50 71 0.71
51 29 0.29
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:32442611 original size:47 final size:47
Alignment explanation
Indices: 32442542--32443111 Score: 933
Period size: 47 Copynumber: 12.1 Consensus size: 47
32442532 GAAATGATAG
* *
32442542 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32442589 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32442636 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
32442685 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
32442732 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
32442779 TAAGGCCTAATAGCCGATGTGAAGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32442826 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32442873 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
32442920 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32442967 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
32443014 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
32443061 CGGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
32443108 TAAG
1 TAAG
32443112 TCCCGAAGGG
Statistics
Matches: 493, Mismatches: 28, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 446 0.90
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:32443286 original size:37 final size:37
Alignment explanation
Indices: 32443230--32443308 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32443220 CCGAGCTCTA
* *
32443230 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
32443267 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32443304 AAGAC
1 AAGAC
32443309 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32445236 original size:29 final size:29
Alignment explanation
Indices: 32445201--32445274 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
32445191 GTTGTGAGAT
* *
32445201 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
32445230 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
32445259 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32445275 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:32445667 original size:40 final size:39
Alignment explanation
Indices: 32445583--32445970 Score: 232
Period size: 40 Copynumber: 9.7 Consensus size: 39
32445573 TTGAATGATG
* * * *
32445583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32445623 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32445663 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
32445702 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
** * * **
32445743 -CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
* * * **
32445782 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
32445822 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
* * * **
32445862 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTAAA
** * * **
32445902 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTAAA
* *
32445942 TCCGGGCTAAGTTCGAAGAGCATTCGTGC
1 TCCGGGCTAAGTCCGAAG-GCATTTGTGC
32445971 TAGTGATATA
Statistics
Matches: 312, Mismatches: 26, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
39 53 0.17
40 235 0.75
41 24 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32445827 original size:80 final size:80
Alignment explanation
Indices: 32445583--32446042 Score: 524
Period size: 80 Copynumber: 5.8 Consensus size: 80
32445573 TTGAATGATG
** * * *
32445583 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* * *
32445645 TTTGTGCGAGTTACTA-A
64 TTCGTGCTAGTGA-TATA
** * * * * *
32445662 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG-GCA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* * *
32445724 TTTGTGCGAGTTACTATA
64 TTCGTGCTAGTGA-TATA
* *
32445742 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
*
32445807 CGTGCTAGTGATGTA
66 CGTGCTAGTGATATA
*
32445822 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
*
32445887 CGTGCTAGTGATGTA
66 CGTGCTAGTGATATA
*
32445902 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTT-CGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
32445966 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* * * * * * *
32445981 TCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCA
32446043 ATCATGCTGG
Statistics
Matches: 342, Mismatches: 32, Indels: 13
0.88 0.08 0.03
Matches are distributed among these distances:
78 35 0.10
79 103 0.30
80 179 0.52
81 25 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:32445839 original size:120 final size:120
Alignment explanation
Indices: 32445583--32446042 Score: 517
Period size: 120 Copynumber: 3.9 Consensus size: 120
32445573 TTGAATGATG
* * *
32445583 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * * * * * **
32445644 ATTTGTGCGAGTTACT-AATTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA-TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * * * *
32445702 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCAT
* *
32445766 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
65 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
32445822 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
32445887 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
32445942 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * * *
32446005 CGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
32446043 ATCATGCTGG
Statistics
Matches: 296, Mismatches: 38, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
118 47 0.16
119 88 0.30
120 136 0.46
121 25 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:32446051 original size:40 final size:40
Alignment explanation
Indices: 32445701--32446055 Score: 473
Period size: 40 Copynumber: 8.9 Consensus size: 40
32445691 GAGTTACTAA
* ** * * *
32445701 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGT
*
32445741 AACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
32445781 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
32445821 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
32445861 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
32445901 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
32445941 ATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * * *
32445980 ATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
32446019 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
32446056 CGTGTATTCG
Statistics
Matches: 282, Mismatches: 30, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
39 65 0.23
40 205 0.73
41 12 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:32461853 original size:5 final size:5
Alignment explanation
Indices: 32461843--32461867 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32461833 CATTGGAACT
32461843 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
32461868 CTTAGTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:32472732 original size:182 final size:183
Alignment explanation
Indices: 32472425--32472780 Score: 642
Period size: 182 Copynumber: 2.0 Consensus size: 183
32472415 AGTCTTGGGC
32472425 TGTGTAATGGAGTATTTATTTTACTGCTTGAGCTATGTAGGTAGTGGAGTTGGACTGAAATATAG
1 TGTGTAATGGAGTATTTATTTTACTGCTTGAGCTATGTAGGTAGTGGAGTTGGACTGAAATATAG
*
32472490 CTATGGGGAGTTTGATTTGAATTTGAATGGAGTTGTTGAGGGAGTTGAGGAGAAATTGGTGGAGT
66 CTATGGGGAGTTTGATTTGAATTTGAATGGAGTTGTTGAGGGAGTTGAAGAGAAATTGGTGGAGT
32472555 AATCCAAGGA-GGATAAGGGGAGAGATTTTAGGAGAAAATCGTGGGAGTATGT
131 AATCCAAGGAGGGATAAGGGGAGAGATTTTAGGAGAAAATCGTGGGAGTATGT
** * *
32472607 TGTGTAATGGAGTATTTATTTTGTTGCTTGAGTTGTGTAGGTAGTGGAGTTGGACTGAAATATAG
1 TGTGTAATGGAGTATTTATTTTACTGCTTGAGCTATGTAGGTAGTGGAGTTGGACTGAAATATAG
*
32472672 CTATGGGGGGTTTGATTTGAATTTGAATGGAGTTGTTGAGGGAGTTGAAGAGAAATTGGTGGAGT
66 CTATGGGGAGTTTGATTTGAATTTGAATGGAGTTGTTGAGGGAGTTGAAGAGAAATTGGTGGAGT
*
32472737 ACTCCAAGGAGGGATAAGGGGAGAGATTTTAGGAGAAAATCGTG
131 AATCCAAGGAGGGATAAGGGGAGAGATTTTAGGAGAAAATCGTG
32472781 AAAGTGGGGT
Statistics
Matches: 166, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
182 133 0.80
183 33 0.20
ACGTcount: A:0.28, C:0.04, G:0.36, T:0.32
Consensus pattern (183 bp):
TGTGTAATGGAGTATTTATTTTACTGCTTGAGCTATGTAGGTAGTGGAGTTGGACTGAAATATAG
CTATGGGGAGTTTGATTTGAATTTGAATGGAGTTGTTGAGGGAGTTGAAGAGAAATTGGTGGAGT
AATCCAAGGAGGGATAAGGGGAGAGATTTTAGGAGAAAATCGTGGGAGTATGT
Found at i:32473739 original size:20 final size:21
Alignment explanation
Indices: 32473714--32473755 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
32473704 TTTCATGGGC
32473714 TTGGGCC-GTAATGGGCCTTG
1 TTGGGCCAGTAATGGGCCTTG
*
32473734 TTGGGCCGAGTACTGGGCCTTG
1 TTGGGCC-AGTAATGGGCCTTG
32473756 AGCCCATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (21 bp):
TTGGGCCAGTAATGGGCCTTG
Found at i:32473881 original size:27 final size:28
Alignment explanation
Indices: 32473832--32473946 Score: 148
Period size: 27 Copynumber: 4.2 Consensus size: 28
32473822 GGAGGTCAAC
* *
32473832 AAATGATCGACAT-CCCTCTATAGGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
32473859 AAATGACCGAAATACCCTC-ATAGGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
* *
32473886 AAATGATCGAAATACCC-CCATAGGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
* *
32473913 AAATAACCCAAATA-CCTCTATAGGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
32473940 AAATGAC
1 AAATGAC
32473947 TGTTATACTC
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
26 3 0.04
27 69 0.90
28 5 0.06
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.21
Consensus pattern (28 bp):
AAATGACCGAAATACCCTCTATAGGGTA
Found at i:32474143 original size:26 final size:26
Alignment explanation
Indices: 32474113--32474215 Score: 116
Period size: 26 Copynumber: 4.0 Consensus size: 26
32474103 GGAAGAATAT
* *
32474113 TGTTACTGGCAGCTTTGGTGCGATAC
1 TGTTACTGGCAGCTCTGCTGCGATAC
* * *
32474139 TGTTATTGGAAGCTCTGCTGCGATCC
1 TGTTACTGGCAGCTCTGCTGCGATAC
*
32474165 TGTTACTGGCAGCTCTGCTGCGATAT
1 TGTTACTGGCAGCTCTGCTGCGATAC
* * * *
32474191 TATTACTGACAGCTTTGCTACGATA
1 TGTTACTGGCAGCTCTGCTGCGATA
32474216 TTGGTGTCTT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.35
Consensus pattern (26 bp):
TGTTACTGGCAGCTCTGCTGCGATAC
Found at i:32479299 original size:23 final size:23
Alignment explanation
Indices: 32479273--32479316 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32479263 ATTACAGTTG
* *
32479273 TAATATCCTGAAAATTACTACCA
1 TAATACCCCGAAAATTACTACCA
32479296 TAATACCCCGAAAATTACTAC
1 TAATACCCCGAAAATTACTAC
32479317 AGCGAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACCA
Found at i:32496482 original size:117 final size:118
Alignment explanation
Indices: 32496303--32496611 Score: 468
Period size: 117 Copynumber: 2.6 Consensus size: 118
32496293 ATAACCGCAA
* * * *
32496303 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
32496368 CGGATATATCAACTTGCATAATTGCCTTCGGGTCTTA-ACCTGATATATCAACTC
65 CGGATATATCAACTCGCACAA-TGCCTTCGGGTCTTAGACCGGATATATCAACTC
32496422 GCACAATGCCTTCGGGT-TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* *
32496486 GGATTTATCAACTCGCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 GGATATATCAACTCGCACAATGCCTTCGGGTCTTAGACCGGATATATCAACTC
32496539 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATC-ACTCGCACAAATGCC-TCGGGTCTTAGCC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32496601 C-GATATATCAA
65 CGGATATATCAA
32496612 ATGCTCATGC
Statistics
Matches: 177, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
115 9 0.05
116 29 0.16
117 94 0.53
118 27 0.15
119 18 0.10
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (118 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
GGATATATCAACTCGCACAATGCCTTCGGGTCTTAGACCGGATATATCAACTC
Found at i:32496508 original size:39 final size:40
Alignment explanation
Indices: 32496303--32496611 Score: 463
Period size: 40 Copynumber: 7.9 Consensus size: 40
32496293 ATAACCGCAA
* * * *
32496303 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32496343 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * * *
32496383 GCATAATTGCCTTCGGGTCTTA-ACCTGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32496422 GCAC-AATGCCTTCGGGT-TTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32496460 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32496500 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32496539 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATC-ACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32496577 GCACAAATGCC-TCGGGTCTTAGCCC-GATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
32496612 ATGCTCATGC
Statistics
Matches: 245, Mismatches: 18, Indels: 14
0.88 0.06 0.05
Matches are distributed among these distances:
36 4 0.02
37 20 0.08
38 47 0.19
39 71 0.29
40 103 0.42
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32504668 original size:40 final size:40
Alignment explanation
Indices: 32504617--32504972 Score: 597
Period size: 40 Copynumber: 8.9 Consensus size: 40
32504607 ATAACCGCAA
* * * *
32504617 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32504657 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
32504697 GCATAATTGCCTTCGGGTCTTAACCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32504737 GCACAAATGCCTTCGGGT-TTATCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32504776 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32504816 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32504856 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
32504896 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32504936 GCACAAATGCCTTCGGGTCTTAGTCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
32504973 ATGCTCATGC
Statistics
Matches: 297, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
39 38 0.13
40 259 0.87
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32507491 original size:16 final size:16
Alignment explanation
Indices: 32507447--32507494 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
32507437 TGCTAAGGTG
* *
32507447 AACTGATGAGCTAGCA
1 AACTGACGAGCTCGCA
* *
32507463 AAATAACGAGCTCGCA
1 AACTGACGAGCTCGCA
32507479 AACTGACGAGCTCGCA
1 AACTGACGAGCTCGCA
32507495 CAGCGATAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (16 bp):
AACTGACGAGCTCGCA
Found at i:32510027 original size:20 final size:21
Alignment explanation
Indices: 32509988--32510030 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
32509978 CGATGCTTAC
*
32509988 TATTATTCGCACTTCAGTTCT
1 TATTATTCGCACTCCAGTTCT
*
32510009 TATTATT-GCACTCCGGTTCT
1 TATTATTCGCACTCCAGTTCT
32510029 TA
1 TA
32510031 ATGCTACTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.47
Consensus pattern (21 bp):
TATTATTCGCACTCCAGTTCT
Found at i:32514843 original size:107 final size:108
Alignment explanation
Indices: 32514561--32514884 Score: 445
Period size: 107 Copynumber: 3.0 Consensus size: 108
32514551 GGAACTTATT
* * *
32514561 AACAACATTGATGCAAAACTTAATTCAATGTAATTAAGGAGGATGGTTCAAACTAACACA-AATG
1 AACAACATTGATGCAAAACTTAATTCAATATAATTAAGGATGATGGTTCAAACTAACA-AGAAAG
* *
32514625 AAAGATTCAAAAGTTATTTGCCCAGCTAGCTCTAGCATTTGGCA
65 AAAGATTCAAAAGTTATTTGCTCAGCTTGCTCTAGCATTTGGCA
* * ** *
32514669 AGCAACATTGATGCAAAACTTAATTCAGTATAATTAAGGATGACAGTTCAAACTAATAAGAAAGA
1 AACAACATTGATGCAAAACTTAATTCAATATAATTAAGGATGATGGTTCAAACTAACAAGAAAGA
* * *
32514734 AAGTTTCAAGAGTTATTTGCTCAGCTTGCCCTAGCATTTGG-A
66 AAGATTCAAAAGTTATTTGCTCAGCTTGCTCTAGCATTTGGCA
* * * * *
32514776 AACAAAATTGATGCAAATCTTAATTCAATATAATTATGGATGATGGTTCAAACTAACATGAACGA
1 AACAACATTGATGCAAAACTTAATTCAATATAATTAAGGATGATGGTTCAAACTAACAAGAAAGA
* *
32514841 AAGCTTCAAAAGTTATTTGCTCAGCTTGCTCTAGCATTCGGCA
66 AAGATTCAAAAGTTATTTGCTCAGCTTGCTCTAGCATTTGGCA
32514884 A
1 A
32514885 TTTCTAATTT
Statistics
Matches: 187, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
107 94 0.50
108 93 0.50
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (108 bp):
AACAACATTGATGCAAAACTTAATTCAATATAATTAAGGATGATGGTTCAAACTAACAAGAAAGA
AAGATTCAAAAGTTATTTGCTCAGCTTGCTCTAGCATTTGGCA
Found at i:32519543 original size:18 final size:18
Alignment explanation
Indices: 32519522--32519561 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32519512 CTTTCTTCAA
* *
32519522 TTTCTATTTCACTTTTCT
1 TTTCTATTTCACATTCCT
*
32519540 TTTCTGTTTCACATTCCT
1 TTTCTATTTCACATTCCT
32519558 TTTC
1 TTTC
32519562 ACTCTCAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.25, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTCTATTTCACATTCCT
Found at i:32541429 original size:44 final size:44
Alignment explanation
Indices: 32541381--32542085 Score: 272
Period size: 44 Copynumber: 15.7 Consensus size: 44
32541371 TTTTAATCCA
*
32541381 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTG
* * * * * * * *
32541425 CTCCATTGTAACTTCAGAGATATAAGATTGGTATCTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTG
* * * * * * * *
32541469 CTCCACTGCAACTTTAAGAAAATAAGGTTTGTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTG
* *
32541513 CTCCACTGCAGCTTCAGGGAGATAAGATTTGTAGCCCGTCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTA----G-CTTCAATCTG
* * ** * *
32541562 CTCCATTGCAACTTCAGGGAGATAAGATTGATTTATTTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATT-A-GTAGCTTCAATCTG
* * * *
32541608 TTCCACTGCAACTTCAGGGAGATGAAG-TT--T-GATAT-GATCTA
1 CTCCACTGCAACTTCAGGGAGAT-AAGATTAGTAGCT-TCAATCTG
* ** * * *
32541649 CTCTACTGCAACTTCAAAGAGATAAGATTTGTAATTTATAGCTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGA--T-T-A---GTAGCTTCAATCTG
* * * * * * * *
32541700 TTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTTTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCAATCTG
* *
32541745 CTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATCTG
* * *
32541789 C-CCACTACAACTTCAAGGG-GATAAGGTT--T-GCTAT-GATCTG
1 CTCCACTGCAACTTC-AGGGAGATAAGATTAGTAGCT-TCAATCTG
* * * *
32541829 CTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATAACTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA--T-T-A---GTAGCTTCAATCTG
* * * * * *
32541880 TTTCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCAATCTG
* * * * * *
32541925 TTCCACTACAACTTCAGGGAGATAAAACTCA-TAACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATCTG
* * * * ** * * *
32541969 TTCCACTACAACTTAAAGGAGATAAGGCTCGTAACTTCAACCT-
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTG
* * ** * * *
32542012 C-CCTTATTGCAACTTCAGGGGGATCTGAATT-GTGGCTTTAATCTA
1 CTCC--ACTGCAACTTCAGGGAGATAAG-ATTAGTAGCTTCAATCTG
* *
32542057 CTCTACTGTAACTTCAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
32542086 CGTCATGATG
Statistics
Matches: 487, Mismatches: 128, Indels: 93
0.69 0.18 0.13
Matches are distributed among these distances:
40 13 0.03
41 42 0.09
42 6 0.01
43 23 0.05
44 194 0.40
45 70 0.14
46 34 0.07
47 3 0.01
48 3 0.01
49 38 0.08
50 4 0.01
51 57 0.12
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTG
Found at i:32541771 original size:96 final size:91
Alignment explanation
Indices: 32541557--32541982 Score: 319
Period size: 96 Copynumber: 4.7 Consensus size: 91
32541547 CCCGTCTTCA
* * * * *
32541557 ATCTGCTCCATTGCAACTTCAGGGAGATAAGA-TTGATTTAT-TTTTAACCTGTTCCACTGCAAC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGATTTATACTTCAACCTGTTCCACTACAAC
* * * *
32541620 TTCAGGGAGATGAAG-TTTG--ATATG
66 TTCAGGGAAAT-AAGATTCGCTATTTC
* ** * **
32541644 ATCTACTCTACTGCAACTTCAAAGAGATAAGATTTGTAATTTATAGCTTTAATTTGTTCCACTAC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG--ATTTATA-CTTCAACCTGTTCCACTAC
32541709 AACTTCAGGGAAATAAGATTCGCTATCTTC
63 AACTTCAGGGAAATAAGATTCGCTAT-TTC
* * *
32541739 AGTTTACTCCACTGCAACTTCAGGGAGATAAGACTTG---TA-ACTTCAACCTG-CCCACTACAA
1 A-TCTACTCCACTGCAACTTCAGGGAGATAAGATTTGATTTATACTTCAACCTGTTCCACTACAA
* * * *
32541799 CTTCAAGGG-GATAAGGTTTGCTA--TG
65 CTTC-AGGGAAATAAGATTCGCTATTTC
* * * * * *
32541824 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATAACTTCAATCTGTTTCACTGC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG--ATTTAT-ACTTCAACCTGTTCCACTAC
32541889 AACTTCAGGGAAATAAGATTCGCTATCTTC
63 AACTTCAGGGAAATAAGATTCGCTAT-TTC
** * ** *
32541919 AGTCTGTTCCACTACAACTTCAGGGAGATAA-AACTCA--TA-ACTTCAACCTGTTCCACTACAA
1 A-TCTACTCCACTGCAACTTCAGGGAGATAAGATTTGATTTATACTTCAACCTGTTCCACTACAA
32541980 CTT
65 CTT
32541983 AAAGGAGATA
Statistics
Matches: 266, Mismatches: 49, Indels: 46
0.74 0.14 0.13
Matches are distributed among these distances:
84 30 0.11
85 2 0.01
87 27 0.10
88 27 0.10
89 35 0.13
90 7 0.03
91 21 0.08
92 53 0.20
93 1 0.00
94 2 0.01
95 6 0.02
96 55 0.21
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (91 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGATTTATACTTCAACCTGTTCCACTACAAC
TTCAGGGAAATAAGATTCGCTATTTC
Found at i:32541826 original size:180 final size:181
Alignment explanation
Indices: 32541551--32541995 Score: 592
Period size: 180 Copynumber: 2.5 Consensus size: 181
32541541 TTGTAGCCCG
* * * ** *
32541551 TCTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGA-TTGATTTATTTTTAACCTGTTCCACT
1 TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTG---TAACTTCAACCTGTTCCACT
*
32541615 GCAACTTC-AGGGAGATGAA-GTTTGATATGATCTACTCTACTGCAACTTCAAAGAGATAAGATT
63 ACAACTTCAAGGG-GAT-AAGGTTTGATATGATCTACTCTACTGCAACTTCAAAGAGATAAGATT
* * *
32541678 TGTAATTTATAGCTTTAATTTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTA
126 TGTAATTTATAACTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTA
* *
32541734 TCTTCAGTTTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTG-CCCACTACA
1 TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCACTACA
* * *
32541798 ACTTCAAGGGGATAAGGTTTGCTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAA
66 ACTTCAAGGGGATAAGGTTTGATATGATCTACTCTACTGCAACTTCAAAGAGATAAGATTTGTAA
* *
32541863 TTTATAACTTCAATCTGTTTCACTGCAACTTCAGGGAAATAAGATTCGCTA
131 TTTATAACTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTA
** * * **
32541914 TCTTCAGTCTGTTCCACTACAACTTCAGGGAGATAAAACTCATAACTTCAACCTGTTCCACTACA
1 TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCACTACA
* *
32541979 ACTTAAAGGAGATAAGG
66 ACTTCAAGGGGATAAGG
32541996 CTCGTAACTT
Statistics
Matches: 231, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
179 2 0.01
180 155 0.67
181 37 0.16
183 34 0.15
184 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (181 bp):
TCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGTTCCACTACA
ACTTCAAGGGGATAAGGTTTGATATGATCTACTCTACTGCAACTTCAAAGAGATAAGATTTGTAA
TTTATAACTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTA
Found at i:32541981 original size:89 final size:89
Alignment explanation
Indices: 32541698--32541982 Score: 294
Period size: 89 Copynumber: 3.2 Consensus size: 89
32541688 AGCTTTAATT
* *
32541698 TGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTTTACTCCACTGCAACTTCAGG
1 TGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
* *
32541763 GAGATAAGACTTGTAACTTCAACC
66 GAGATAAAACTTATAACTTCAACC
* * * * * *
32541787 TG-CCCACTACAACTTCAAGGG-GATAAGGTTTGCTA---TGA-TCTGCTCTACTGCAACTTCAG
1 TGTTCCACTACAACTTC-AGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAG
* * *
32541846 AGAGATAAGATTTGTAATTTATAACTTCAATC
65 GGAGAT-A-A-----AACTTATAACTTCAACC
* * * *
32541878 TGTTTCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGTTCCACTACAACTTCAGG
1 TGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
*
32541943 GAGATAAAACTCATAACTTCAACC
66 GAGATAAAACTTATAACTTCAACC
32541967 TGTTCCACTACAACTT
1 TGTTCCACTACAACTT
32541983 AAAGGAGATA
Statistics
Matches: 153, Mismatches: 29, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
84 23 0.15
85 3 0.02
86 1 0.01
88 24 0.16
89 34 0.22
91 19 0.12
92 22 0.14
94 1 0.01
95 3 0.02
96 23 0.15
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (89 bp):
TGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
GAGATAAAACTTATAACTTCAACC
Found at i:32548031 original size:27 final size:27
Alignment explanation
Indices: 32548001--32548059 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
32547991 AATTAATAAT
32548001 CAAAGACAAATGAAA-TAAAATAATATA
1 CAAAGACAAATGAAAGT-AAATAATATA
* * *
32548028 CAAAAACAATTTAAAGTAAATAATATA
1 CAAAGACAAATGAAAGTAAATAATATA
*
32548055 AAAAG
1 CAAAG
32548060 GTTTAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (27 bp):
CAAAGACAAATGAAAGTAAATAATATA
Found at i:32548079 original size:26 final size:25
Alignment explanation
Indices: 32548013--32548425 Score: 209
Period size: 26 Copynumber: 15.8 Consensus size: 25
32548003 AAGACAAATG
* *
32548013 AAATAAAATAATATACAAAAACAATTTA
1 AAAT-AAATAATATA-TAAAA-AGTTTA
* *
32548041 AAGTAAATAATATA-AAAAGGTTTA
1 AAATAAATAATATATAAAAAGTTTA
*
32548065 AAATAAATAATATATGAAAAGAACAAAAATTT-
1 AAATAAATAATATAT-------A-AAAAGTTTA
* * *
32548097 AAATAAATAATACAAAAAAATGTTCA
1 AAATAAATAATATATAAAAA-GTTTA
* * ***
32548123 AAATAAACAATATGTGAAATTTTTTTA
1 AAATAAATAATATAT-AAA-AAGTTTA
* * *
32548150 ACATAAATCAA-ATATAAAACTGTTTG
1 AAATAAAT-AATATATAAAA-AGTTTA
32548176 AAATAAATAAT-T-TAAAGCAA-TTTA
1 AAATAAATAATATATAAA--AAGTTTA
* * *
32548200 AAATAAACAATACATAAAACACTTTA
1 AAATAAATAATATATAAAA-AGTTTA
* * * * *
32548226 ATAGAAATAATATGTGAAAAAATCTA
1 AAATAAATAATATAT-AAAAAGTTTA
32548252 AAATAAATAATATATAAAAAATAGTTTA
1 AAATAAATAATATAT--AAAA-AGTTTA
*
32548280 AAATAAAATAATATATAAAGCAA-TTCA
1 AAAT-AAATAATATATAAA--AAGTTTA
*
32548307 AAATAAATAATATATGAAAAAATTTA
1 AAATAAATAATATAT-AAAAAGTTTA
32548333 AAATAAATAATATA-AAATAA-TTTA
1 AAATAAATAATATATAAA-AAGTTTA
* *
32548357 ATATACATAATATAT-AAAA-TTTA
1 AAATAAATAATATATAAAAAGTTTA
* * *
32548380 AAATAAATAAAATATAAAACCGTTAA
1 AAATAAATAATATATAAAA-AGTTTA
32548406 AAATAAATAATATATAAAAA
1 AAATAAATAATATATAAAAA
32548426 CAATTAAAAA
Statistics
Matches: 297, Mismatches: 53, Indels: 73
0.70 0.13 0.17
Matches are distributed among these distances:
23 18 0.06
24 63 0.21
25 15 0.05
26 109 0.37
27 46 0.15
28 14 0.05
29 12 0.04
32 14 0.05
33 6 0.02
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATAAATAATATATAAAAAGTTTA
Found at i:32548217 original size:50 final size:51
Alignment explanation
Indices: 32548146--32548424 Score: 180
Period size: 50 Copynumber: 5.5 Consensus size: 51
32548136 GTGAAATTTT
*
32548146 TTTAACATAAATCAA-ATATAAAACTGTTTGAAATAAATAAT-T-TAAAGCAA
1 TTTAAAATAAA-CAATATATAAAACTGTTT-AAATAAATAATATATAAAGCAA
* ** * * *
32548196 TTTAAAATAAACAATACATAAAACACTTTAATAGAAATAATATGTGAAA-AAA
1 TTTAAAATAAACAATATATAAAACTGTTTAA-ATAAATAATATAT-AAAGCAA
* * *
32548248 TCTAAAATAAATAATATATAAAAAATAGTTTAAAATAAAATAATATATAAAGCAA
1 TTTAAAATAAACAATATAT-AAAACT-GTTT-AAAT-AAATAATATATAAAGCAA
* * * * *
32548303 TTCAAAATAAATAATATATGAAAAAAT-TTAAAATAAATAATATA-AAA-TAA
1 TTTAAAATAAACAATATAT--AAAACTGTTTAAATAAATAATATATAAAGCAA
* * * * * * **
32548353 TTTAATATACATAATATATAAAA-T-TTAAAATAAATAAAATATAAAACCG
1 TTTAAAATAAACAATATATAAAACTGTTTAAATAAATAATATATAAAGCAA
* *
32548402 TTAAAAATAAATAATATATAAAA
1 TTTAAAATAAACAATATATAAAA
32548425 ACAATTAAAA
Statistics
Matches: 187, Mismatches: 29, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
47 17 0.09
48 7 0.04
49 25 0.13
50 47 0.25
51 4 0.02
52 29 0.16
53 11 0.06
54 9 0.05
55 31 0.17
56 7 0.04
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (51 bp):
TTTAAAATAAACAATATATAAAACTGTTTAAATAAATAATATATAAAGCAA
Found at i:32548325 original size:81 final size:76
Alignment explanation
Indices: 32548194--32548425 Score: 213
Period size: 81 Copynumber: 3.0 Consensus size: 76
32548184 AATTTAAAGC
* * * * * *
32548194 AATTTAAAATAAACAATACATAAAACACTTTAATAGAAATAATATGTGAAAAAATCTAAAATAAA
1 AATTTAAAATAAATAATATAT-AAA-A-TTCAAAATAAATAATATATGAAAAAAT-TAAAATAAA
32548259 TAATATATAAAAAAT
62 TAATATATAAAAAAT
*
32548274 AGTTTAAAATAAAATAATATATAAAGCAATTCAAAATAAATAATATATGAAAAAATTTAAAATAA
1 AATTTAAAAT-AAATAATATAT-AA--AATTCAAAATAAATAATATATGAAAAAA-TTAAAATAA
32548339 AT-A-ATAT--AAAAT
61 ATAATATATAAAAAAT
* * * * **
32548351 AATTTAATATACATAATATATAAAATTTAAAATAAATAAAATAT-AAAACCGTTAAAAATAAATA
1 AATTTAAAATAAATAATATATAAAATTCAAAATAAATAATATATGAAAA-AATT-AAAATAAATA
32548415 ATATATAAAAA
64 ATATATAAAAA
32548426 CAATTAAAAA
Statistics
Matches: 128, Mismatches: 14, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
72 6 0.05
73 28 0.22
74 1 0.01
75 6 0.05
76 10 0.08
77 16 0.12
79 4 0.03
80 10 0.08
81 44 0.34
82 2 0.02
83 1 0.01
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.29
Consensus pattern (76 bp):
AATTTAAAATAAATAATATATAAAATTCAAAATAAATAATATATGAAAAAATTAAAATAAATAAT
ATATAAAAAAT
Found at i:32548360 original size:15 final size:14
Alignment explanation
Indices: 32548250--32548389 Score: 69
Period size: 14 Copynumber: 9.9 Consensus size: 14
32548240 TGAAAAAATC
32548250 TAAAATAAATAATA
1 TAAAATAAATAATA
* *
32548264 TATAAA-AAATAGTT
1 TA-AAATAAATAATA
32548278 TAAAATAAAATAATA
1 TAAAAT-AAATAATA
*
32548293 T---ATAAAGCAAT-
1 TAAAATAAA-TAATA
32548304 TCAAAATAAATAATA
1 T-AAAATAAATAATA
** *
32548319 TATGA-AAA-AATT
1 TAAAATAAATAATA
32548331 TAAAATAAATAATA
1 TAAAATAAATAATA
*
32548345 TAAAATAATTTAATA
1 TAAAATAA-ATAATA
* *
32548360 TACATAATATATAAAATT
1 TA-A-AATA-A-ATAATA
32548378 TAAAATAAATAA
1 TAAAATAAATAA
32548390 AATATAAAAC
Statistics
Matches: 94, Mismatches: 17, Indels: 30
0.67 0.12 0.21
Matches are distributed among these distances:
11 4 0.04
12 11 0.12
13 9 0.10
14 29 0.31
15 24 0.26
16 5 0.05
17 5 0.05
18 7 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (14 bp):
TAAAATAAATAATA
Found at i:32548379 original size:47 final size:49
Alignment explanation
Indices: 32548176--32548425 Score: 190
Period size: 50 Copynumber: 4.9 Consensus size: 49
32548166 AAACTGTTTG
* * * *
32548176 AAATAAATAAT-TTAAAGCAATTTAAAATAAACAATACATAAAACACTTTA
1 AAATAAATAATATAAAAGCAATTCAAAATAAATAATATATAAAA-A-TTTA
* *
32548226 ATAGAAATAATATGTGAAAA--AA-TCTAAAATAAATAATATATAAAAAATAGTTTA
1 AAATAAATAATA--T-AAAAGCAATTC-AAAATAAATAATATAT--AAAA-A-TTTA
32548280 AAATAAAATAATATATAAAGCAATTCAAAATAAATAATATATGAAAAAATTTA
1 AAAT-AAATAATATA-AAAGCAATTCAAAATAAATAATATAT--AAAAATTTA
* * * *
32548333 AAATAAATAATATAAAA-TAATTTAATATACATAATATAT-AAAATTTA
1 AAATAAATAATATAAAAGCAATTCAAAATAAATAATATATAAAAATTTA
** *
32548380 AAATAAATAAAATATAAAA-CCGTTAAAAATAAATAATATATAAAAA
1 AAATAAAT--AATATAAAAGCAATTCAAAATAAATAATATATAAAAA
32548426 CAATTAAAAA
Statistics
Matches: 164, Mismatches: 21, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
47 16 0.10
49 25 0.15
50 31 0.19
51 4 0.02
52 27 0.16
53 13 0.08
54 15 0.09
55 31 0.19
56 2 0.01
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.29
Consensus pattern (49 bp):
AAATAAATAATATAAAAGCAATTCAAAATAAATAATATATAAAAATTTA
Found at i:32548434 original size:26 final size:25
Alignment explanation
Indices: 32548176--32548459 Score: 194
Period size: 26 Copynumber: 11.1 Consensus size: 25
32548166 AAACTGTTTG
*
32548176 AAATAAATAAT-T-TAAAGCAATTTA
1 AAATAAATAATATATAAAACAA-TTA
* * *
32548200 AAATAAACAATACATAAAACACTTTA
1 AAATAAATAATATATAAAACA-ATTA
* * *
32548226 ATAGAAATAATATGTGAAAA-AATCTA
1 AAATAAATAATATAT-AAAACAAT-TA
*
32548252 AAATAAATAATATATAAAAAATAGTTTA
1 AAATAAATAATATATAAAACA-A--TTA
*
32548280 AAATAAAATAATATATAAAGCAATTCA
1 AAAT-AAATAATATATAAAACAATT-A
32548307 AAATAAATAATATATGAAAA-AATTTA
1 AAATAAATAATATAT-AAAACAA-TTA
*
32548333 AAATAAATAATATA-AAATA-ATTTA
1 AAATAAATAATATATAAA-ACAATTA
* * *
32548357 ATATACATAATATAT-AAA-ATTTA
1 AAATAAATAATATATAAAACAATTA
* **
32548380 AAATAAATAAAATATAAAACCGTTAA
1 AAATAAATAATATATAAAACAATT-A
32548406 AAATAAATAATATATAAAAACAATTA
1 AAATAAATAATATAT-AAAACAATTA
32548432 AAA-AGAATAA-ATA-AATAACAAATTA
1 AAATA-AATAATATATAA-AAC-AATTA
32548457 AAA
1 AAA
32548460 GGTTAAAACC
Statistics
Matches: 211, Mismatches: 27, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
23 20 0.09
24 36 0.17
25 21 0.10
26 89 0.42
27 22 0.10
28 7 0.03
29 16 0.08
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (25 bp):
AAATAAATAATATATAAAACAATTA
Found at i:32548445 original size:23 final size:25
Alignment explanation
Indices: 32548414--32548459 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
32548404 AAAAATAAAT
*
32548414 AATATATAAA-AAC-AATTAAAAAG
1 AATAAATAAATAACAAATTAAAAAG
32548437 AATAAATAAATAACAAATTAAAA
1 AATAAATAAATAACAAATTAAAA
32548460 GGTTAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 3 0.15
25 8 0.40
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (25 bp):
AATAAATAAATAACAAATTAAAAAG
Found at i:32557063 original size:24 final size:23
Alignment explanation
Indices: 32557031--32557093 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
32557021 TCCATTTCTT
*
32557031 GTTTAGTTTTATTTCTAATTGTAA
1 GTTTAGTTTTATTTC-AATTATAA
32557055 -TTTATGTTTCT-TTTCAATTATAA
1 GTTTA-GTTT-TATTTCAATTATAA
32557078 GTTTAGTTTTTATTTC
1 GTTTAG-TTTTATTTC
32557094 GTTCTTCAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
23 13 0.39
24 19 0.58
25 1 0.03
ACGTcount: A:0.22, C:0.06, G:0.10, T:0.62
Consensus pattern (23 bp):
GTTTAGTTTTATTTCAATTATAA
Found at i:32561465 original size:27 final size:27
Alignment explanation
Indices: 32561439--32561729 Score: 235
Period size: 27 Copynumber: 10.8 Consensus size: 27
32561429 TATCGAAATA
* * * *
32561439 CCCTCGAAGGGTAAAATTACTGGAATA
1 CCCTCGTAGGGTAAAATGACTGTAATG
* ** * *
32561466 CTCTCAAAGGGTAAAATGA-TCGCAATT
1 CCCTCGTAGGGTAAAATGACT-GTAATG
32561493 CCC-CTGTAGGGTAAAATGACTGTAATG
1 CCCTC-GTAGGGTAAAATGACTGTAATG
*
32561520 CCCTTGTAGGGTAAAATGACTGTAATG
1 CCCTCGTAGGGTAAAATGACTGTAATG
*
32561547 CCCTTGTAGGGTAAAATGACTGTAATG
1 CCCTCGTAGGGTAAAATGACTGTAATG
*
32561574 CCC-CTGTAGGGTAAAATGACCGTAATG
1 CCCTC-GTAGGGTAAAATGACTGTAATG
*
32561601 CCCTTGTAGGGTAAAATGA-TCGTAATG
1 CCCTCGTAGGGTAAAATGACT-GTAATG
*
32561628 CCC-CTATAGGGTAAAATGA-TCGTAATG
1 CCCTC-GTAGGGTAAAATGACT-GTAATG
*
32561655 CCC-CAGTAGGGTAAAATG-GTCGTAAT-
1 CCCTC-GTAGGGTAAAATGACT-GTAATG
* * * *
32561681 ACTTCTATAGGGTTAAATGA-TCGTAATG
1 CCCTC-GTAGGGTAAAATGACT-GTAATG
32561709 CCC-CTGTAGGGTAAAATGACT
1 CCCTC-GTAGGGTAAAATGACT
32561730 ATTTTGCCCC
Statistics
Matches: 223, Mismatches: 28, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.01
27 217 0.97
28 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (27 bp):
CCCTCGTAGGGTAAAATGACTGTAATG
Found at i:32561504 original size:54 final size:54
Alignment explanation
Indices: 32561446--32561729 Score: 326
Period size: 54 Copynumber: 5.3 Consensus size: 54
32561436 ATACCCTCGA
* * * * * *
32561446 AGGGTAAAATTACTGGAAT-ACTCTCAAAGGGTAAAATGATCGCAATTCCCCTGT
1 AGGGTAAAATGACTGTAATGCCTCT-ATAGGGTAAAATGATCGTAATGCCCCTGT
* *
32561500 AGGGTAAAATGACTGTAATGCC-CTTGTAGGGTAAAATGA-CTGTAATGCCCTTGT
1 AGGGTAAAATGACTGTAATGCCTC-TATAGGGTAAAATGATC-GTAATGCCCCTGT
* * * *
32561554 AGGGTAAAATGACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTTGT
1 AGGGTAAAATGACTGTAATGCCTCTATAGGGTAAAATGATCGTAATGCCCCTGT
* *
32561608 AGGGTAAAATGA-TCGTAATGCCCCTATAGGGTAAAATGATCGTAATGCCCCAGT
1 AGGGTAAAATGACT-GTAATGCCTCTATAGGGTAAAATGATCGTAATGCCCCTGT
* * * *
32561662 AGGGTAAAATG-GTCGTAATACTTCTATAGGGTTAAATGATCGTAATGCCCCTGT
1 AGGGTAAAATGACT-GTAATGCCTCTATAGGGTAAAATGATCGTAATGCCCCTGT
32561716 AGGGTAAAATGACT
1 AGGGTAAAATGACT
32561730 ATTTTGCCCC
Statistics
Matches: 204, Mismatches: 18, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
53 2 0.01
54 197 0.97
55 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (54 bp):
AGGGTAAAATGACTGTAATGCCTCTATAGGGTAAAATGATCGTAATGCCCCTGT
Found at i:32561535 original size:81 final size:80
Alignment explanation
Indices: 32561446--32561672 Score: 296
Period size: 81 Copynumber: 2.8 Consensus size: 80
32561436 ATACCCTCGA
* * * * * *
32561446 AGGGTAAAATTACTGGAATACTCTCAAAGGGTAAAATGATCGCAATTCCCCTGTAGGGTAAAATG
1 AGGGTAAAATGACTGTAATGC-CTCATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATG
*
32561511 ACTGTAATGCCCTTGT
65 ACCGTAATGCCCTTGT
**
32561527 AGGGTAAAATGACTGTAATGCCCTTGTAGGGTAAAATGA-CTGTAATGCCCCTGTAGGGTAAAAT
1 AGGGTAAAATGACTGTAATG-CCTCATAGGGTAAAATGATC-GTAATGCCCCTGTAGGGTAAAAT
32561591 GACCGTAATGCCCTTGT
64 GACCGTAATGCCCTTGT
* *
32561608 AGGGTAAAATGA-TCGTAATGCCCCTATAGGGTAAAATGATCGTAATGCCCCAGTAGGGTAAAAT
1 AGGGTAAAATGACT-GTAATGCCTC-ATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAAT
32561672 G
64 G
32561673 GTCGTAATAC
Statistics
Matches: 128, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
80 4 0.03
81 122 0.95
82 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (80 bp):
AGGGTAAAATGACTGTAATGCCTCATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGA
CCGTAATGCCCTTGT
Found at i:32561679 original size:81 final size:81
Alignment explanation
Indices: 32561473--32561727 Score: 340
Period size: 81 Copynumber: 3.1 Consensus size: 81
32561463 ATACTCTCAA
* *
32561473 AGGGTAAAATGATCGCAATTCCCCTGTAGGGTAAAAT-GACTGTAATGCCCTTGTAGGGTAAAAT
1 AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGGAC-GTAATGCCCTTGTAGGGTAAAAT
*
32561537 GA-CTGTAATGCCCTTGT
65 GATC-GTAATGCCCCTGT
32561554 AGGGTAAAATGA-CTGTAATGCCCCTGTAGGGTAAAAT-GACCGTAATGCCCTTGTAGGGTAAAA
1 AGGGTAAAATGATC-GTAATGCCCCTGTAGGGTAAAATGGA-CGTAATGCCCTTGTAGGGTAAAA
*
32561617 TGATCGTAATGCCCCTAT
64 TGATCGTAATGCCCCTGT
* * * * * *
32561635 AGGGTAAAATGATCGTAATGCCCCAGTAGGGTAAAATGGTCGTAAT-ACTTCTATAGGGTTAAAT
1 AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGGACGTAATGCCCT-TGTAGGGTAAAAT
32561699 GATCGTAATGCCCCTGT
65 GATCGTAATGCCCCTGT
32561716 AGGGTAAAATGA
1 AGGGTAAAATGA
32561728 CTATTTTGCC
Statistics
Matches: 157, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
80 3 0.02
81 150 0.96
82 4 0.03
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (81 bp):
AGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGGACGTAATGCCCTTGTAGGGTAAAATG
ATCGTAATGCCCCTGT
Found at i:32561851 original size:24 final size:24
Alignment explanation
Indices: 32561746--32561843 Score: 133
Period size: 24 Copynumber: 4.1 Consensus size: 24
32561736 CCCCTCGGGG
*
32561746 TTAAATGACTGATTTGTCTGTAAT
1 TTAAATGACTAATTTGTCTGTAAT
* *
32561770 TTAAATGGCTGATTTGTCTGTAAT
1 TTAAATGACTAATTTGTCTGTAAT
* **
32561794 TTAAATGACTAATTTATCTGTGGT
1 TTAAATGACTAATTTGTCTGTAAT
*
32561818 TTAAATGACTAATTTGTCTGTGAT
1 TTAAATGACTAATTTGTCTGTAAT
32561842 TT
1 TT
32561844 GTATGACTGA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (24 bp):
TTAAATGACTAATTTGTCTGTAAT
Found at i:32562075 original size:32 final size:32
Alignment explanation
Indices: 32562030--32562197 Score: 212
Period size: 32 Copynumber: 5.3 Consensus size: 32
32562020 ATGATGCTAT
* *
32562030 TGATGGCTTTGTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* *
32562062 TGATGGCTGTGTGCCGATCATATTACTACTAT
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* * * *
32562094 TGATGGCTTTGTACTGATCATACTACTATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* *
32562126 TGATGGCTGTGTGCCGATCATATTATTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* *
32562158 TGATGGCTTTGCGCCAATCATATTACTA-TAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
*
32562189 TTATGGCTT
1 TGATGGCTT
32562198 GTAGCCATTC
Statistics
Matches: 115, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 11 0.10
32 104 0.90
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTACTAC
Found at i:32562105 original size:64 final size:64
Alignment explanation
Indices: 32562026--32562196 Score: 254
Period size: 64 Copynumber: 2.7 Consensus size: 64
32562016 TGCTATGATG
*
32562026 CTATTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGTGCCGATCATATTACTA
1 CTATTGATGGCTTTGTGCCGATCATATTACTATTACTGATGGCTGTGTGCCGATCATATTACTA
* * * *
32562090 CTATTGATGGCTTTGTACTGATCATACTACTATTACTGATGGCTGTGTGCCGATCATATTATTA
1 CTATTGATGGCTTTGTGCCGATCATATTACTATTACTGATGGCTGTGTGCCGATCATATTACTA
* * * *
32562154 CTACTGATGGCTTTGCGCCAATCATATTACTA-TACTTATGGCT
1 CTATTGATGGCTTTGTGCCGATCATATTACTATTACTGATGGCT
32562197 TGTAGCCATT
Statistics
Matches: 95, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
63 10 0.11
64 85 0.89
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (64 bp):
CTATTGATGGCTTTGTGCCGATCATATTACTATTACTGATGGCTGTGTGCCGATCATATTACTA
Found at i:32562224 original size:22 final size:22
Alignment explanation
Indices: 32562199--32562258 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
32562189 TTATGGCTTG
*
32562199 TAGCCATTCTGTTTATAGCTAA
1 TAGCCATTCTGTTTACAGCTAA
* * * **
32562221 TAGCTATCCTGTTTACGGCTCT
1 TAGCCATTCTGTTTACAGCTAA
*
32562243 TAGCCATTCTGGTTAC
1 TAGCCATTCTGTTTAC
32562259 TGGCAGCTTT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (22 bp):
TAGCCATTCTGTTTACAGCTAA
Found at i:32574362 original size:11 final size:11
Alignment explanation
Indices: 32574348--32574372 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32574338 TACCAATAAT
32574348 AATTCAATTCC
1 AATTCAATTCC
32574359 AATTCAATTCC
1 AATTCAATTCC
32574370 AAT
1 AAT
32574373 AATAAAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTCAATTCC
Found at i:32584427 original size:82 final size:82
Alignment explanation
Indices: 32584276--32584630 Score: 513
Period size: 82 Copynumber: 4.4 Consensus size: 82
32584266 ATTACCACAA
* ** * * *
32584276 GCACAATTGCCTTCGGGTCTTAACCCGG--GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
*
32584339 CCCGGATATATCAACTT
66 CCCGGATATATCAACTC
*
32584356 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
32584421 CCCGGATATATCAACTC
66 CCCGGATATATCAACTC
* *
32584438 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
32584503 CCCGGATATATCAACTC
66 CCCGGATATATCAACTC
* * * *
32584520 GCACAAATGCCTGCGGGTCTTAGCCC--AGATATATCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
* *
32584583 CCCGGATAAAATC-ACTA
66 CCCGGAT-ATATCAACTC
*
32584600 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
32584631 AAATTCAAAT
Statistics
Matches: 251, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
80 95 0.38
81 4 0.02
82 152 0.61
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (82 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
CCCGGATATATCAACTC
Found at i:32584512 original size:122 final size:122
Alignment explanation
Indices: 32584276--32584630 Score: 529
Period size: 122 Copynumber: 2.9 Consensus size: 122
32584266 ATTACCACAA
* * ** * *
32584276 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
32584341 CGG--ATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
66 CGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
*
32584398 GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
32584463 CGGATATATATCAACTCGCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32584520 GCACAAATGCCTGCGGGTCTTAGCCCAGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
32584585 CGGATA-AAATC-ACTAGCACAATTGCCTTCGGGACTTAGCCCGGATA
66 CGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATA
32584631 AAATTCAAAT
Statistics
Matches: 213, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
120 31 0.15
121 4 0.02
122 141 0.66
124 37 0.17
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (122 bp):
GCACAAATGCCTGCGGGTCTTAACCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATATCAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32584634 original size:40 final size:41
Alignment explanation
Indices: 32584276--32584631 Score: 490
Period size: 40 Copynumber: 8.8 Consensus size: 41
32584266 ATTACCACAA
* * ** *
32584276 GCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
32584316 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
32584356 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
* *
32584398 GCACAAATGCCTGCGGGTCTTAACCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
*
32584438 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-ATATCAACTC
*
32584480 GCACAAATGCCTGCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
32584520 GCACAAATGCCTGCGGGTCTTAGCCCAGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
32584560 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
* *
32584600 GCACAATTGCCTTCGGGACTTAGCCCGGATAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAA
32584632 AATTCAAATG
Statistics
Matches: 290, Mismatches: 20, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
40 210 0.72
41 4 0.01
42 76 0.26
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAATATCAACTC
Found at i:32586463 original size:12 final size:12
Alignment explanation
Indices: 32586435--32586469 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
32586425 TTTTCATTAC
32586435 CTTTCTTTT-TT
1 CTTTCTTTTATT
32586446 -TTTCTTTTATT
1 CTTTCTTTTATT
32586457 CTTTCTTTTATT
1 CTTTCTTTTATT
32586469 C
1 C
32586470 ATTATAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.36
11 2 0.09
12 12 0.55
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (12 bp):
CTTTCTTTTATT
Found at i:32588067 original size:9 final size:10
Alignment explanation
Indices: 32588039--32588076 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
32588029 AATGTTTCTT
32588039 ATTTCTATT-
1 ATTTCTATTC
32588048 -TTTCTATTC
1 ATTTCTATTC
32588057 ATTTC-ATTC
1 ATTTCTATTC
32588066 ATTTCTATTC
1 ATTTCTATTC
32588076 A
1 A
32588077 AACACGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.31
9 9 0.35
10 9 0.35
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTCTATTC
Found at i:32594352 original size:41 final size:41
Alignment explanation
Indices: 32594295--32594470 Score: 289
Period size: 41 Copynumber: 4.3 Consensus size: 41
32594285 GTTTGGAATT
32594295 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
32594336 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* * *
32594377 GGTGATCTGAATCAAGCTATAAGCCTAGTAGGCTAAATGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* * * *
32594418 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCT
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
32594459 GGTGATCTGAAT
1 GGTGATCTGAAT
32594471 ATGTTAAATT
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 124 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
Found at i:32596960 original size:23 final size:23
Alignment explanation
Indices: 32596934--32597032 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
32596924 ATAAGTGTCA
32596934 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32596957 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
32596980 CACTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* **
32597003 CACTGAAATGTAGCTTAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32597026 CACTGAT
1 CACTGAT
32597033 CAATAACACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32603899 original size:23 final size:23
Alignment explanation
Indices: 32603873--32603971 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
32603863 ATAAGTGCCA
*
32603873 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
32603896 CACTGATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
*
32603919 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
* *
32603942 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
32603965 CACTGAT
1 CACTGAT
32603972 CAATAACACT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 72 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCAAAGCTAC
Found at i:32611643 original size:49 final size:50
Alignment explanation
Indices: 32611510--32611693 Score: 280
Period size: 50 Copynumber: 3.7 Consensus size: 50
32611500 ATTTGGGTAA
* *
32611510 AGAGGTCTCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
32611560 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * *
32611610 AGAGGTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
32611659 AGAACATCCCATGTAAGACCATGTCTGGGACATGG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGG
32611694 ATTTGGCATG
Statistics
Matches: 123, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
49 38 0.31
50 62 0.50
51 23 0.19
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:32621997 original size:25 final size:25
Alignment explanation
Indices: 32621969--32622021 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32621959 TATAAGGGAG
*
32621969 AAAGCAAAACGAGGTAAGCTTATGT
1 AAAGCAAAACGAGGTAAGCTTACGT
***
32621994 AAAGTTTAACGAGGTAAGCTTACGT
1 AAAGCAAAACGAGGTAAGCTTACGT
32622019 AAA
1 AAA
32622022 ACTTAGTAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAGCAAAACGAGGTAAGCTTACGT
Found at i:32625537 original size:36 final size:36
Alignment explanation
Indices: 32625490--32625573 Score: 116
Period size: 36 Copynumber: 2.3 Consensus size: 36
32625480 TACTCTCTAT
* *
32625490 TTTGGTGTGTTTCGGATGGA-TGAGGTCTTATGAACA
1 TTTGGTGTGTTTCAGATGGACT-AGCTCTTATGAACA
*
32625526 TTTGGTGTGTTTCAGATGGACTAGCTCTTATGAGCA
1 TTTGGTGTGTTTCAGATGGACTAGCTCTTATGAACA
*
32625562 TCTGGTGTGTTT
1 TTTGGTGTGTTT
32625574 TGGTAGGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 42 0.98
37 1 0.02
ACGTcount: A:0.17, C:0.11, G:0.31, T:0.42
Consensus pattern (36 bp):
TTTGGTGTGTTTCAGATGGACTAGCTCTTATGAACA
Found at i:32629090 original size:29 final size:29
Alignment explanation
Indices: 32629058--32629144 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
32629048 ATAGTACTTG
* *
32629058 ATAAATATAACACCGACATAAAGTGCCTC
1 ATAAATGTAACACCGACACAAAGTGCCTC
* * ** * *
32629087 ATAACTGTAACACTGGTACAAAGTACCTG
1 ATAAATGTAACACCGACACAAAGTGCCTC
*
32629116 ATAAATGTAATCACCGACACATAGTGCCT
1 ATAAATGTAA-CACCGACACAAAGTGCCT
32629145 AATAGACCCT
Statistics
Matches: 43, Mismatches: 14, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
29 30 0.70
30 13 0.30
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (29 bp):
ATAAATGTAACACCGACACAAAGTGCCTC
Found at i:32631162 original size:34 final size:35
Alignment explanation
Indices: 32631118--32631184 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32631108 CAGTAAAATA
*
32631118 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
*
32631152 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTAGAAAATATTTT
32631185 TTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:32636017 original size:23 final size:23
Alignment explanation
Indices: 32635991--32636036 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32635981 AACAAGTAAA
32635991 AGAGATTTCAAAGTATATAAGCT
1 AGAGATTTCAAAGTATATAAGCT
32636014 AGAGATTTCAAAGTATATAAGCT
1 AGAGATTTCAAAGTATATAAGCT
32636037 CTTCTATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.30
Consensus pattern (23 bp):
AGAGATTTCAAAGTATATAAGCT
Found at i:32642389 original size:30 final size:30
Alignment explanation
Indices: 32642345--32642407 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
32642335 ACTTAACAAG
*
32642345 CAAATGCCTCTAAAATAATAACAAAAATAA
1 CAAATGCCTCTAAAATAAAAACAAAAATAA
* * * *
32642375 CAAATGTCTTTAAAATAAAAACAATATTAA
1 CAAATGCCTCTAAAATAAAAACAAAAATAA
32642405 CAA
1 CAA
32642408 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAAAAACAAAAATAA
Found at i:32645954 original size:42 final size:42
Alignment explanation
Indices: 32645894--32646039 Score: 168
Period size: 42 Copynumber: 3.5 Consensus size: 42
32645884 AGGGTTTATA
* * *
32645894 CTTTGGTTTAGCCGATGATGCACTTACGTGCTAGTTTG-TTCG
1 CTTTGGTTTATCCAATGATGCACTTACGTGCTAGTATGATT-G
* * *
32645936 CTTTGGTTTATCCAATGATGAACTTACGTGCTAGTATGAATA
1 CTTTGGTTTATCCAATGATGCACTTACGTGCTAGTATGATTG
* * * * *
32645978 CTTCGATTTATCTAATGATGCATTTATGTGCTAGTATGATTG
1 CTTTGGTTTATCCAATGATGCACTTACGTGCTAGTATGATTG
*
32646020 CTTTGGTTTATCCGATGATG
1 CTTTGGTTTATCCAATGATG
32646040 TAACACCCCT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 84 0.99
43 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.42
Consensus pattern (42 bp):
CTTTGGTTTATCCAATGATGCACTTACGTGCTAGTATGATTG
Found at i:32660595 original size:27 final size:27
Alignment explanation
Indices: 32660552--32660709 Score: 200
Period size: 27 Copynumber: 5.9 Consensus size: 27
32660542 AAAACTACTG
32660552 AAATA-CCTCGAAGGGTAAAATTATCT
1 AAATACCCTCGAAGGGTAAAATTATCT
*
32660578 AAATACCCTCGAAGGGTAAAATTATCG
1 AAATACCCTCGAAGGGTAAAATTATCT
*
32660605 AAATACCCTCGAAGTGTAAAATTA-CT
1 AAATACCCTCGAAGGGTAAAATTATCT
*
32660631 AAAATACCCTCGAAGGATAAAATTA-CT
1 -AAATACCCTCGAAGGGTAAAATTATCT
*
32660658 GGAAA-ACCCTCGAAAGGTAAAATTATC-
1 --AAATACCCTCGAAGGGTAAAATTATCT
*
32660685 AGAATACTCTCGAAGGGTAAAATTA
1 A-AATACCCTCGAAGGGTAAAATTA
32660710 CTGAAATGCC
Statistics
Matches: 116, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
25 1 0.01
26 8 0.07
27 103 0.89
28 4 0.03
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATTATCT
Found at i:32660625 original size:54 final size:54
Alignment explanation
Indices: 32660540--32660716 Score: 224
Period size: 54 Copynumber: 3.3 Consensus size: 54
32660530 CGGAAAGGTT
*
32660540 GTAAAACTACT-GAAATA-CCTCGAAGGGTAAAATTATCTAAATACCCTCGAAGG
1 GTAAAATTACTCGAAATACCCTCGAA-GGTAAAATTATCTAAATACCCTCGAAGG
32660593 GTAAAATTA-TCGAAATACCCTCGAAGTGTAAAATTA-CTAAAATACCCTCGAAGG
1 GTAAAATTACTCGAAATACCCTCGAAG-GTAAAATTATCT-AAATACCCTCGAAGG
* * *
32660647 ATAAAATTACTGGAAA-ACCCTCGAAAGGTAAAATTATC-AGAATACTCTCGAAGG
1 GTAAAATTACTCGAAATACCCTCG-AAGGTAAAATTATCTA-AATACCCTCGAAGG
32660701 GTAAAATTACT-GAAAT
1 GTAAAATTACTCGAAAT
32660717 GCCCCTATAG
Statistics
Matches: 110, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
52 1 0.01
53 22 0.20
54 78 0.71
55 9 0.08
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.24
Consensus pattern (54 bp):
GTAAAATTACTCGAAATACCCTCGAAGGTAAAATTATCTAAATACCCTCGAAGG
Found at i:32660652 original size:81 final size:79
Alignment explanation
Indices: 32660539--32660716 Score: 243
Period size: 81 Copynumber: 2.2 Consensus size: 79
32660529 TCGGAAAGGT
* * *
32660539 TGTAAAACTACTGAAATACCTCGAAGGGTAAAATTATCT-AAATACCCTCGAAGGGTAAAATTAT
1 TGTAAAATTACTGAAATACCTCGAAGGATAAAATTA-CTGAAA-ACCCTCGAAAGGTAAAATTAT
32660603 C-GAAATACCCTCGAAG
64 CAG-AATACCCTCGAAG
*
32660619 TGTAAAATTACTAAAATACCCTCGAAGGATAAAATTACTGGAAAACCCTCGAAAGGTAAAATTAT
1 TGTAAAATTACTGAAATA-CCTCGAAGGATAAAATTACT-GAAAACCCTCGAAAGGTAAAATTAT
*
32660684 CAGAATACTCTCGAAG
64 CAGAATACCCTCGAAG
*
32660700 GGTAAAATTACTGAAAT
1 TGTAAAATTACTGAAAT
32660717 GCCCCTATAG
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
80 18 0.21
81 65 0.75
82 4 0.05
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (79 bp):
TGTAAAATTACTGAAATACCTCGAAGGATAAAATTACTGAAAACCCTCGAAAGGTAAAATTATCA
GAATACCCTCGAAG
Found at i:32660732 original size:27 final size:27
Alignment explanation
Indices: 32660714--32661010 Score: 145
Period size: 27 Copynumber: 11.0 Consensus size: 27
32660704 AAATTACTGA
*
32660714 AATGCCCCTATAGGCTAAAGTGACTAT
1 AATGCCCCTATAGGCTAAAATGACTAT
* * * ***
32660741 AATGCCCCTGTAGGGTAAAATGGCCGC
1 AATGCCCCTATAGGCTAAAATGACTAT
* * * * * *
32660768 AACGCCCTTGTAGGGTAAAGTGA-TCGT
1 AATGCCCCTATAGGCTAAAATGACT-AT
* * * * **
32660795 AATGCCTCTGTAGGGTAAAATGGCCGT
1 AATGCCCCTATAGGCTAAAATGACTAT
** * *
32660822 AATGCCCCTGCAGGGTAAAATGA-TCGT
1 AATGCCCCTATAGGCTAAAATGACT-AT
* **
32660849 AATGCCCCTGTAAGG-TAAAATGACCGT
1 AATGCCCCTAT-AGGCTAAAATGACTAT
* * **
32660876 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATGCCCCTATAGGCTAAAATGACTAT
* **
32660903 AATGCCCTTATAAGG-TAAAATGACCGT
1 AATGCCCCTAT-AGGCTAAAATGACTAT
* * *
32660930 AATGCCCCTGTAGGATAAAATGACTGT
1 AATGCCCCTATAGGCTAAAATGACTAT
* *
32660957 AATGCCCCTATAGGGTAAAATGA-TCGT
1 AATGCCCCTATAGGCTAAAATGACT-AT
* * *
32660984 AATGCTCCTGTAGGGTAAAATGACTAT
1 AATGCCCCTATAGGCTAAAATGACTAT
32661011 TTTACCCCTC
Statistics
Matches: 225, Mismatches: 35, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
26 7 0.03
27 211 0.94
28 7 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
AATGCCCCTATAGGCTAAAATGACTAT
Found at i:32660756 original size:54 final size:54
Alignment explanation
Indices: 32660698--32661008 Score: 374
Period size: 54 Copynumber: 5.8 Consensus size: 54
32660688 ATACTCTCGA
* * * * * * *
32660698 AGGGTAAAATTACTGAAATGCCCCTATAGGCTAAAGTGACTATAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTGT
* * * * * *
32660752 AGGGTAAAATGGCCGCAACGCCCTTGTAGGGTAAAGTGA-TCGTAATGCCTCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACT-GTAATGCCCCTGT
* *
32660806 AGGGTAAAATGGCCGTAATGCCCCTGCAGGGTAAAATGA-TCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACT-GTAATGCCCCTGT
* * * *
32660860 AAGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTTAT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTGT
* * *
32660914 AAGGTAAAATGACCGTAATGCCCCTGTAGGATAAAATGACTGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTGT
* *
32660968 AGGGTAAAATGATCGTAATGCTCCTGTAGGGTAAAATGACT
1 AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACT
32661009 ATTTTACCCC
Statistics
Matches: 226, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.00
54 225 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (54 bp):
AGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTGT
Found at i:32660827 original size:81 final size:80
Alignment explanation
Indices: 32660698--32661007 Score: 368
Period size: 81 Copynumber: 3.8 Consensus size: 80
32660688 ATACTCTCGA
* * * * * **
32660698 AGGGTAAAATTACTGAAATGCCCCTATAGGCTAAAGTGACTATAATGCCCCTGTAGGGTAAAATG
1 AGGGTAAAATGAC-GTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATG
* * * *
32660763 GCCGCAACGCCCTTGT
65 ACCGTAATGCCCCTGT
* * * *
32660779 AGGGTAAAGTGATCGTAATGCCTCTGTAGGGTAAAATGGCCGTAATGCCCCTGCAGGGTAAAATG
1 AGGGTAAAATGA-CGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATG
*
32660844 ATCGTAATGCCCCTGT
65 ACCGTAATGCCCCTGT
* * * *
32660860 AAGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTTATAAGGTAAAATG
1 AGGGTAAAATGA-CGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATG
32660925 ACCGTAATGCCCCTGT
65 ACCGTAATGCCCCTGT
* * * *
32660941 AGGATAAAATGACTGTAATGCCCCTATAGGGTAAAATGATCGTAATGCTCCTGTAGGGTAAAATG
1 AGGGTAAAATGAC-GTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATG
32661006 AC
65 AC
32661008 TATTTTACCC
Statistics
Matches: 193, Mismatches: 34, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 191 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (80 bp):
AGGGTAAAATGACGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGA
CCGTAATGCCCCTGT
Found at i:32661125 original size:24 final size:24
Alignment explanation
Indices: 32661074--32661157 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
32661064 GTCCGAAATG
32661074 TAAATGACTGATTTG-TTGTGATT
1 TAAATGACTGATTTGTTTGTGATT
*
32661097 GAAATGACTGATTTGTTTGTGATT
1 TAAATGACTGATTTGTTTGTGATT
* *
32661121 TAAATGACTGATTTGTCTATGATT
1 TAAATGACTGATTTGTTTGTGATT
**
32661145 TGTATGACTGATT
1 TAAATGACTGATT
32661158 CCGTGCATGG
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
23 14 0.26
24 40 0.74
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.46
Consensus pattern (24 bp):
TAAATGACTGATTTGTTTGTGATT
Found at i:32661260 original size:27 final size:27
Alignment explanation
Indices: 32661222--32661286 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
32661212 ATGGAGGAAG
32661222 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
32661247 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
32661275 TACTATTACTGG
1 TACTGTTACTGG
32661287 CAGCTTTGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:32661292 original size:27 final size:27
Alignment explanation
Indices: 32661240--32661292 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
32661230 TGGTGGCTCT
* **
32661240 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
32661267 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
32661293 TGCTGCGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:32661312 original size:26 final size:26
Alignment explanation
Indices: 32661274--32661333 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
32661264 TTGGCCACAT
32661274 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
* *
32661300 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
*
32661326 ATGCTATT
1 ATACTATT
32661334 GTTGGATTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:32661383 original size:32 final size:32
Alignment explanation
Indices: 32661342--32661519 Score: 198
Period size: 32 Copynumber: 5.6 Consensus size: 32
32661332 TTGTTGGATT
*
32661342 TGTACCGATCATATTACCATTACTGATGGTTG
1 TGTACCGATCATATTACTATTACTGATGGTTG
* *
32661374 TGTACCGATCATATTACCATTACTGATGGCTG
1 TGTACCGATCATATTACTATTACTGATGGTTG
* * * *
32661406 TATGCCGATCATATTACTACTACTAATGGCTT-
1 TGTACCGATCATATTACTATTACTGATGG-TTG
* * *
32661438 TGTGCCGATCATACTACTATTACTGATGGCTG
1 TGTACCGATCATATTACTATTACTGATGGTTG
* *
32661470 TGTACCGGTCATATTACTACTACTGATGGCTT-
1 TGTACCGATCATATTACTATTACTGATGG-TTG
* *
32661502 TGTGCCAATCATATTACT
1 TGTACCGATCATATTACT
32661520 GTACTTATGG
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
31 1 0.01
32 120 0.98
33 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTACCGATCATATTACTATTACTGATGGTTG
Found at i:32661447 original size:64 final size:64
Alignment explanation
Indices: 32661344--32661518 Score: 244
Period size: 64 Copynumber: 2.7 Consensus size: 64
32661334 GTTGGATTTG
* * *
32661344 TACCGATCATATTACCATTACTGATGG-TTGTGTACCGATCATATTACCATTACTGATGGCTGTA
1 TACCGATCATATTACTACTACTGATGGCTT-TGTGCCGATCATATTACCATTACTGATGGCTGTA
* * * * *
32661408 TGCCGATCATATTACTACTACTAATGGCTTTGTGCCGATCATACTACTATTACTGATGGCTGTG
1 TACCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTA
* *
32661472 TACCGGTCATATTACTACTACTGATGGCTTTGTGCCAATCATATTAC
1 TACCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTAC
32661519 TGTACTTATG
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
64 95 0.98
65 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (64 bp):
TACCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTA
Found at i:32661513 original size:96 final size:95
Alignment explanation
Indices: 32661340--32661532 Score: 269
Period size: 96 Copynumber: 2.0 Consensus size: 95
32661330 TATTGTTGGA
* * *
32661340 TTTGTACCGATCATATTACCATTACTGATGGTTGTGTACCGATCATATTACCATTACTGATGGCT
1 TTTGTACCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGATGGCT
*
32661405 GTATGCCGATCATATTACTACTACTAATGGC
66 GTATGCCAATCATATTACT-CTACTAATGGC
* * * *
32661436 TTTGTGCCGATCATACTACTATTACTGATGGCTGTGTACCGGTCATATTACTACTACTGATGGCT
1 TTTGTACCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGATGGCT
* * * *
32661501 TTGTGCCAATCATATTACTGTACTTATGGC
66 GTATGCCAATCATATTACTCTACTAATGGC
32661531 TT
1 TT
32661533 GTAGCCATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 11 0.13
96 74 0.87
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (95 bp):
TTTGTACCGATCATACTACCATTACTGATGGCTGTGTACCGATCATATTACCACTACTGATGGCT
GTATGCCAATCATATTACTCTACTAATGGC
Found at i:32670415 original size:56 final size:50
Alignment explanation
Indices: 32670321--32670607 Score: 236
Period size: 50 Copynumber: 5.6 Consensus size: 50
32670311 ATTTGGGTAA
* *
32670321 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCA-C--TGAG---ATG
32670377 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAGATG
* ** * **
32670427 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGCTCGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAGATG
** * * * * *
32670477 AGAGGTCCCCCGTAAGACCATGTCTGGGAGATGGCATGGGAACCT-ATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCA-CTGAGATG
** * * * * * * * *
32670527 AGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGTAGT-AAAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAGATG
* ** *
32670576 AAACATCCCATGTAAGACTATGTCTGGGACAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACAT
32670608 AGCTTTGGCA
Statistics
Matches: 193, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 29 0.15
50 118 0.61
51 1 0.01
53 4 0.02
55 1 0.01
56 40 0.21
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAGATG
Found at i:32670505 original size:100 final size:102
Alignment explanation
Indices: 32670321--32670562 Score: 267
Period size: 100 Copynumber: 2.4 Consensus size: 102
32670311 ATTTGGGTAA
* * *
32670321 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCACTCGCACCA-T-AG--TATGAGAGGTCCC
* * *
32670386 ATGTAAGACCATGTCTGGGACATGACATTGGCA-CTGAGATG
62 ACGTAAGACCATGTCTGGGACATGACATGGGAACCT-AGATG
* * *
32670427 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGCTCGCACCA-AG-ATGAGAGGTCCCCCGT
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCACTCGCACCATAGTATGAGAGGTCCCACGT
* * *
32670490 AAGACCATGTCTGGGAGATGGCATGGGAACCTATATG
66 AAGACCATGTCTGGGACATGACATGGGAACCTAGATG
* * *
32670527 AGA-ACTCTCATGTAAGACCATATCTGGGATATGGCA
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCA
32670563 TTGGTAGTAA
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
100 73 0.62
101 2 0.02
103 2 0.02
106 40 0.34
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (102 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCACTCGCACCATAGTATGAGAGGTCCCACGT
AAGACCATGTCTGGGACATGACATGGGAACCTAGATG
Found at i:32677939 original size:19 final size:19
Alignment explanation
Indices: 32677900--32677936 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
32677890 CGATAGAATT
32677900 TTTTTCATAAAATAATTAA
1 TTTTTCATAAAATAATTAA
32677919 TTTTT-ATAAAATAATTAA
1 TTTTTCATAAAATAATTAA
32677937 ATTGTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTTTCATAAAATAATTAA
Done.