Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 112 of 222
Found at i:35922086 original size:3 final size:3
Alignment explanation
Indices: 35922078--35922125 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
35922068 AAGGGCTCAA
* * * *
35922078 ATT ATT ATT ATC ATT ATC ATT ACT ATT ATT ATT AAAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
35922124 AT
1 AT
35922126 CTTTTTTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
3 34 0.94
4 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:35922624 original size:150 final size:147
Alignment explanation
Indices: 35922447--35922730 Score: 371
Period size: 150 Copynumber: 1.9 Consensus size: 147
35922437 ATCTTGGGAA
* *
35922447 TTTTTTTTAAAAAAGGGAAAGTTTAGATTTTAAAAATAAAAAAAAATAT-TTTTTTAGTCA-TTT
1 TTTTTTTTAAAAAAGAGAAAGTTTAGATTTTAAAAAT----AAAAATATGTTCTTTAGTCAGTTT
* *
35922510 CAAAGG-AAATTTTAAA-ATTTTAAAACAAAGTTATGAT-TTTTTTAACTATTTCGAAATAAAAG
62 C--AGGAAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAA-
35922572 CTTTGATTTTAAAAAAAATAATAT
124 CTTTGATTTTAAAAAAAATAATAT
**
35922596 TTTTTTTTAAAAAAAGAGAAAGTTTAGATTTTTGAAATAAAAATATGTTCTTTAGTCAGTTTTCA
1 TTTTTTTT-AAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTCTTTAGTCAG-TTTCA
* * *
35922661 GGAAAAATTTAAATTTTTTAAAATAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAACTTTG
64 GGAAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAACTTTG
35922726 ATTTT
129 ATTTT
35922731 TAAAGAAAGT
Statistics
Matches: 119, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
146 8 0.07
147 13 0.11
148 9 0.08
149 40 0.34
150 49 0.41
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (147 bp):
TTTTTTTTAAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTCTTTAGTCAGTTTCAGG
AAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAACTTTGAT
TTTAAAAAAAATAATAT
Found at i:35922767 original size:21 final size:20
Alignment explanation
Indices: 35922717--35922768 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
35922707 ATTTCGAAAT
35922717 AAAACTTTGA-TTTTTAAAG
1 AAAACTTTGATTTTTTAAAG
* *
35922736 -AAAGTAGTGATTTTTTAAAAG
1 AAAACT-TTGATTTTTT-AAAG
35922757 AAAACTTTGATT
1 AAAACTTTGATT
35922769 CTACAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 5 0.20
21 9 0.36
22 4 0.16
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (20 bp):
AAAACTTTGATTTTTTAAAG
Found at i:35926439 original size:27 final size:27
Alignment explanation
Indices: 35926409--35926558 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
35926399 ATATTGAGTC
* * * *
35926409 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35926436 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35926463 CGCACACTTAGTGC-ACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35926490 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
35926517 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35926544 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35926559 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.08
27 90 0.84
28 8 0.07
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35934455 original size:27 final size:27
Alignment explanation
Indices: 35934425--35934493 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
35934415 ATATTGAGTC
* * *
35934425 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
35934452 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
35934479 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35934494 GTACAATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:35941928 original size:20 final size:20
Alignment explanation
Indices: 35941871--35941937 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
35941861 GCAAGTTAAG
*
35941871 ATGAGCTGAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
* * *** *
35941891 ATAAGCTAAGGACAAGCTCA
1 ATGAGCTAAAGTTGAGCTGA
35941911 ATGAGCTAAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
35941931 ATGAGCT
1 ATGAGCT
35941938 TGAAGTAGAG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.22
Consensus pattern (20 bp):
ATGAGCTAAAGTTGAGCTGA
Found at i:35944382 original size:27 final size:27
Alignment explanation
Indices: 35944352--35944529 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
35944342 ATATTGAGTC
* *
35944352 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
35944379 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
35944406 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
35944434 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
35944461 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
35944488 CGCACACTTAGTG-TAACATAGTCAAAT
1 CGCACACTTAGTGCT-ACATAATCAACT
35944515 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35944530 GTACAATTTA
Statistics
Matches: 127, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 26 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35951845 original size:20 final size:20
Alignment explanation
Indices: 35951788--35951854 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
35951778 GCAAGCTAAG
*
35951788 ATGAGCTGAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
* * *** *
35951808 ATAAGCTAAGGACAAGCTCA
1 ATGAGCTAAAGTTGAGCTGA
35951828 ATGAGCTAAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
35951848 ATGAGCT
1 ATGAGCT
35951855 TGAAGTAGAG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.22
Consensus pattern (20 bp):
ATGAGCTAAAGTTGAGCTGA
Found at i:35968824 original size:3 final size:3
Alignment explanation
Indices: 35968816--35968866 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
35968806 AAGGGCTCAA
* * * *
35968816 ATT ATT ATT ATC ATT ATC ATT ACT ATT ATT ATT AAAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
35968862 ATT AT
1 ATT AT
35968867 CTTTTTTTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:35969350 original size:146 final size:145
Alignment explanation
Indices: 35969191--35969471 Score: 374
Period size: 147 Copynumber: 1.9 Consensus size: 145
35969181 GATCTTGGGA
** *
35969191 ATTTTTTTTAAAAAAGGGAAAGTTTAGATTTTAAAAATAAAAAAAAATAT-TTTTTTAGTCA-TT
1 ATTTTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAAT----AAAAATATGTTTTTTAGTCAGTT
* *
35969254 TCAAAGG-AAATTTTAAA-ATTTTAAAACAAAGTTATGAT-TTTTTTAACTATTTCGAAATAAAA
62 TC--AGGAAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAA
35969316 GCTTTGATTTAAAAAAAATAAT
125 -CTTTGATTTAAAAAAAATAAT
**
35969338 ATTTTTTAAAAAAAAGAGAAAGTTTAGATTTTTGAAATAAAAATATGTTTTTTAGTCAGTTTTCA
1 ATTTTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTAGTCAG-TTTCA
* *
35969403 GGAAAAATTTAAATTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAACTTTG
65 GGAAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAACTTTG
35969468 ATTT
130 ATTT
35969472 TTAAAGAAAG
Statistics
Matches: 119, Mismatches: 9, Indels: 13
0.84 0.06 0.09
Matches are distributed among these distances:
143 8 0.07
144 14 0.12
145 9 0.08
146 32 0.27
147 56 0.47
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (145 bp):
ATTTTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTAGTCAGTTTCAG
GAAAAATTTAAATATTTTAAAACAAAGTTATGATCTTTTTCAACTATTTCGAAATAAAACTTTGA
TTTAAAAAAAATAAT
Found at i:35969509 original size:21 final size:20
Alignment explanation
Indices: 35969459--35969510 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
35969449 ATTTCGAAAT
35969459 AAAACTTTGA-TTTTTAAAG
1 AAAACTTTGATTTTTTAAAG
* *
35969478 -AAAGTAGTGATTTTTTAAAAG
1 AAAACT-TTGATTTTTT-AAAG
35969499 AAAACTTTGATT
1 AAAACTTTGATT
35969511 CTACAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 5 0.20
21 9 0.36
22 4 0.16
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (20 bp):
AAAACTTTGATTTTTTAAAG
Found at i:35977509 original size:20 final size:20
Alignment explanation
Indices: 35977452--35977518 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
35977442 GCAAGTTAAG
*
35977452 ATGAGCTGAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
* * *** *
35977472 ATCAGCTAAGGACAAGCTCA
1 ATGAGCTAAAGTTGAGCTGA
35977492 ATGAGCTAAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
35977512 ATGAGCT
1 ATGAGCT
35977519 TGAAGTAGAG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.22
Consensus pattern (20 bp):
ATGAGCTAAAGTTGAGCTGA
Found at i:35984172 original size:20 final size:20
Alignment explanation
Indices: 35984115--35984181 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
35984105 GCAAGCTAAG
*
35984115 ATGAGCTGAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
* * *** *
35984135 ATAAGCTAAGGACAAGCTCA
1 ATGAGCTAAAGTTGAGCTGA
35984155 ATGAGCTAAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
35984175 ATGAGCT
1 ATGAGCT
35984182 TGAAGTAGAG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.22
Consensus pattern (20 bp):
ATGAGCTAAAGTTGAGCTGA
Found at i:35994736 original size:79 final size:78
Alignment explanation
Indices: 35994636--35994858 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
35994626 GCTCCTCGTT
* *
35994636 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCG-GACTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
35994701 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
35994716 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
35994779 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * *
35994794 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
35994857 GA
63 GA
35994859 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 47 0.38
79 58 0.47
80 18 0.15
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:35994753 original size:39 final size:39
Alignment explanation
Indices: 35994636--35994858 Score: 242
Period size: 39 Copynumber: 5.6 Consensus size: 39
35994626 GCTCCTCGTT
* * *
35994636 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
35994676 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
35994716 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
35994755 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
35994794 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
35994835 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
35994859 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 94 0.58
40 58 0.36
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:36000950 original size:20 final size:20
Alignment explanation
Indices: 36000893--36000959 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
36000883 GCAAGCTAAG
*
36000893 ATGAGCTGAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
* * *** *
36000913 ATAAGCTAAGGACAAGCTCA
1 ATGAGCTAAAGTTGAGCTGA
36000933 ATGAGCTAAAGTTGAGCTGA
1 ATGAGCTAAAGTTGAGCTGA
36000953 ATGAGCT
1 ATGAGCT
36000960 TGAAGTAGAG
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.22
Consensus pattern (20 bp):
ATGAGCTAAAGTTGAGCTGA
Found at i:36029023 original size:27 final size:27
Alignment explanation
Indices: 36028984--36029161 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36028974 ATATTGAGTC
* * *
36028984 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
36029011 CACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36029038 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36029066 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36029093 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36029120 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36029147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36029162 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36037305 original size:37 final size:37
Alignment explanation
Indices: 36037264--36037352 Score: 169
Period size: 37 Copynumber: 2.4 Consensus size: 37
36037254 GAAGTGAAAC
36037264 ATTGCCATGGCAATTGGAAAGATTAATTGCGAACAGA
1 ATTGCCATGGCAATTGGAAAGATTAATTGCGAACAGA
36037301 ATTGCCATGGCAATTGGAAAGATTAATTGCGAACAGA
1 ATTGCCATGGCAATTGGAAAGATTAATTGCGAACAGA
*
36037338 ATTGCCATAGCAATT
1 ATTGCCATGGCAATT
36037353 TTGGGAAAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (37 bp):
ATTGCCATGGCAATTGGAAAGATTAATTGCGAACAGA
Found at i:36038313 original size:17 final size:17
Alignment explanation
Indices: 36038293--36038330 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
36038283 TTTCTCTGTA
36038293 ATTTGCCAT-TACATTTT
1 ATTTGCCATATA-ATTTT
36038310 ATTTGCCATATAATTTT
1 ATTTGCCATATAATTTT
36038327 -TTTG
1 ATTTG
36038331 TTTTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 14 0.70
18 2 0.10
ACGTcount: A:0.24, C:0.13, G:0.08, T:0.55
Consensus pattern (17 bp):
ATTTGCCATATAATTTT
Found at i:36044724 original size:51 final size:51
Alignment explanation
Indices: 36044666--36044877 Score: 241
Period size: 51 Copynumber: 4.2 Consensus size: 51
36044656 ATACCCGGTT
* *
36044666 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
* *** *
36044717 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCT-ATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATTTTCATCCGATA
* * *** * *
36044768 CGCATAGTAGCTTGCACATAGTACTACACATACGACC--TATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCA-TCCGATA
**
36044818 CATGTAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
36044869 CACATAGTA
1 CACATAGTA
36044878 CTACACACGT
Statistics
Matches: 130, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 38 0.29
51 83 0.64
52 7 0.05
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATTTTCATCCGATA
Found at i:36044790 original size:102 final size:101
Alignment explanation
Indices: 36044668--36044852 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
36044658 ACCCGGTTCA
** *
36044668 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACATAGTAGCCTGC
1 CATAGTAGCTTGCACATAGTACTACACATACGACC--TATCATTCCGATACACATAGTAGCCTGC
36044732 ACATAGTACTACACACGTGATCGAAGCTATCCGGTACG
64 ACATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* **
36044770 CATAGTAGCTTGCACATAGTACTACACATACGACCTATCATTCCGGTACATGTAGTAGCCTGCAC
1 CATAGTAGCTTGCACATAGTACTACACATACGACCTATCATTCCGATACACATAGTAGCCTGCAC
36044835 ATAGTACTACACACGTGA
66 ATAGTACTACACACGTGA
36044853 CCATTTTCAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCTTGCACATAGTACTACACATACGACCTATCATTCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:36044865 original size:101 final size:101
Alignment explanation
Indices: 36044666--36044877 Score: 275
Period size: 101 Copynumber: 2.1 Consensus size: 101
36044656 ATACCCGGTT
** *
36044666 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACATAGTAGCCTG
1 CACATAGTAGCTTGCACATAGTACTACACATACGACCA-TATCATCCGATACACATAGTAGCCTG
* *
36044731 CACATAGTACTACACACGTGATCGAAGCTATCCGGTA
65 CACATAGTACTACACACGTGATCCAAGCTATCCGATA
* * **
36044768 CGCATAGTAGCTTGCACATAGTACTACACATACGACC-TATCATTCCGGTACATGTAGTAGCCTG
1 CACATAGTAGCTTGCACATAGTACTACACATACGACCATATCA-TCCGATACACATAGTAGCCTG
***
36044832 CACATAGTACTACACACGTGA-CCATTTTCATCCGATA
65 CACATAGTACTACACACGTGATCCAAGCT-ATCCGATA
36044869 CACATAGTA
1 CACATAGTA
36044878 CTACACACGT
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 7 0.07
101 54 0.57
102 34 0.36
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (101 bp):
CACATAGTAGCTTGCACATAGTACTACACATACGACCATATCATCCGATACACATAGTAGCCTGC
ACATAGTACTACACACGTGATCCAAGCTATCCGATA
Found at i:36046825 original size:33 final size:33
Alignment explanation
Indices: 36046780--36046844 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
36046770 ACCTCAAGGG
*
36046780 TTGGTCAACAAGGTTAGATAAAGCCTTGTGGGA
1 TTGGTCAACAAGGTTAGATAAAGCCCTGTGGGA
* *
36046813 TTGGTCAGCAAGGTTAGATGAAGCCCTGTGGG
1 TTGGTCAACAAGGTTAGATAAAGCCCTGTGGG
36046845 CTTATGGCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.26
Consensus pattern (33 bp):
TTGGTCAACAAGGTTAGATAAAGCCCTGTGGGA
Found at i:36054295 original size:45 final size:45
Alignment explanation
Indices: 36054231--36054323 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
36054221 AGCCCGAGCC
* *
36054231 AAGAGTTGAGTATAGAGTATACACGGATGCGTCATTCAACAGGCT
1 AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
*
36054276 AAGAGTTGAGTATAGAGTATTCACGAATGCATCATTCAACAGGCT
1 AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
36054321 AAG
1 AAG
36054324 TTGTGTCCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (45 bp):
AAGAGTTGAGTATAGAGTATACACGAATGCATCATTCAACAGGCT
Found at i:36066144 original size:40 final size:40
Alignment explanation
Indices: 36066059--36066247 Score: 245
Period size: 40 Copynumber: 4.8 Consensus size: 40
36066049 GAGTTACTGG
* * * *
36066059 AGTATAAACAGGGGCACAAAAGTGCATTC-AGGATACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
* * * *
36066098 AGTACAAACAGCGGCACACATGTGCTTTCAAGGGCACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
* *
36066138 AGTACAAATAAGGGCACATATGTGCATTCAAGGGTACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
** * *
36066178 AGTACAAACAGGGGCATGTATGTGCATTTAGGGGTACCGA
1 AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
36066218 AGTACAAACAGGGGCACATATGTGCATTCA
1 AGTACAAACAGGGGCACATATGTGCATTCA
36066248 TACAATAATT
Statistics
Matches: 127, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
39 24 0.19
40 103 0.81
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (40 bp):
AGTACAAACAGGGGCACATATGTGCATTCAAGGGTACCGA
Found at i:36067509 original size:38 final size:38
Alignment explanation
Indices: 36067444--36067516 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
36067434 CATAATAGGG
**
36067444 TTGCAAACATACAAGGATTGCTGTAGAACAAACTCATA
1 TTGCAAACATACAAGGATACCTGTAGAACAAACTCATA
*
36067482 TTGCAAACATACAAGGGTCACCT-TAGAACAAACTC
1 TTGCAAACATACAAGGAT-ACCTGTAGAACAAACTC
36067517 GTATGATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 29 0.94
39 2 0.06
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (38 bp):
TTGCAAACATACAAGGATACCTGTAGAACAAACTCATA
Found at i:36068394 original size:12 final size:12
Alignment explanation
Indices: 36068377--36068407 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
36068367 TATGAGTCTT
36068377 ATAACAAGTTAA
1 ATAACAAGTTAA
36068389 ATAACAAGTTAA
1 ATAACAAGTTAA
36068401 ATAACAA
1 ATAACAA
36068408 TAAGCACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.23
Consensus pattern (12 bp):
ATAACAAGTTAA
Found at i:36068718 original size:43 final size:43
Alignment explanation
Indices: 36068580--36068718 Score: 197
Period size: 43 Copynumber: 3.2 Consensus size: 43
36068570 GTGGACGCAG
* * * * **
36068580 CCACCAATAATTGCAGACAAGCTGCTATGTTGGTTGTACATAAA
1 CCACCAAT-TTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
*
36068624 CCACCAAATTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
1 CCACCAATTTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
36068667 CCACCAATTTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
1 CCACCAATTTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
*
36068710 CCAACAATT
1 CCACCAATT
36068719 CTTCCTCCTT
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 79 0.92
44 7 0.08
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
CCACCAATTTTGCAGACAAGTTGCCATGTAGGTTGTGGATAAA
Found at i:36072476 original size:43 final size:41
Alignment explanation
Indices: 36072427--36072590 Score: 168
Period size: 43 Copynumber: 3.9 Consensus size: 41
36072417 ATAATCGCAA
* * * *
36072427 ACAAGCTGCCTTGTAGGCTGTGGACAAACCACCAAATGCATAG
1 ACAAGCTACCATGTAGGTTGTGGATAAACCACCAAATGC--AG
* *
36072470 ACAAGCTACCATGTAGGTTGTGAATAAACCA-TAAATTTTGCAG
1 ACAAGCTACCATGTAGGTTGTGGATAAACCACCAAA---TGCAG
* * * *
36072513 ACAAACTGCCATGTAAGTTGTGGGTAAACCACCAAATTCGCAG
1 ACAAGCTACCATGTAGGTTGTGGATAAACCACCAAA-T-GCAG
36072556 ACAAGCTACCATGTAGGTTGTGGATAAACCACCAA
1 ACAAGCTACCATGTAGGTTGTGGATAAACCACCAA
36072591 TTCTTCCTCC
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 5 0.05
43 89 0.89
44 3 0.03
45 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (41 bp):
ACAAGCTACCATGTAGGTTGTGGATAAACCACCAAATGCAG
Found at i:36076895 original size:20 final size:20
Alignment explanation
Indices: 36076870--36076911 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
36076860 CTGAATCATT
36076870 TCTAAGGTGTTTCTAAGGCC
1 TCTAAGGTGTTTCTAAGGCC
* *
36076890 TCTAAGGTGTTTTTAAGTCC
1 TCTAAGGTGTTTCTAAGGCC
36076910 TC
1 TC
36076912 GAAGCTCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
TCTAAGGTGTTTCTAAGGCC
Found at i:36086069 original size:25 final size:25
Alignment explanation
Indices: 36086041--36086118 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
36086031 ACGAGTTGTG
*
36086041 AATCGGTATGCTCTCATGAGCTATA
1 AATCGGTATGCTCTCATGAGCCATA
* * *
36086066 AATCAGTAGGCTCTCACGAGCCATA
1 AATCGGTATGCTCTCATGAGCCATA
36086091 AATCGGTATGCTCTCATGAGCCATA
1 AATCGGTATGCTCTCATGAGCCATA
36086116 AAT
1 AAT
36086119 TAGTAACCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AATCGGTATGCTCTCATGAGCCATA
Found at i:36087518 original size:13 final size:13
Alignment explanation
Indices: 36087493--36087530 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
36087483 TGTATACAAT
*
36087493 ATAACTTGAAAAC
1 ATAACTTGGAAAC
*
36087506 ATATCTTGGAAAC
1 ATAACTTGGAAAC
36087519 ATAACTTGGAAA
1 ATAACTTGGAAA
36087531 TAGAGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.26
Consensus pattern (13 bp):
ATAACTTGGAAAC
Found at i:36095790 original size:27 final size:27
Alignment explanation
Indices: 36095744--36096024 Score: 203
Period size: 27 Copynumber: 10.4 Consensus size: 27
36095734 GTATATGATG
* * *
36095744 GGGTACAATGACTGTTATGCCCTCGTA
1 GGGTAAAATGACCGTAATGCCCTCGTA
* *
36095771 GGGTAAAATGATCGTAATGCCCCCGTA
1 GGGTAAAATGACCGTAATGCCCTCGTA
* * **
36095798 AGGTAGAATGACCGTAATGCCCTTATA
1 GGGTAAAATGACCGTAATGCCCTCGTA
* * ** * *
36095825 GGGTAAAATGATC-AAAAACCCCCTATA
1 GGGTAAAATGACCGTAATGCCCTC-GTA
* * * *
36095852 GGATAAAATGATCGTAATGCCCCCATA
1 GGGTAAAATGACCGTAATGCCCTCGTA
* *
36095879 TGGTAAAATAACCGTAATGCCC-CTGTA
1 GGGTAAAATGACCGTAATGCCCTC-GTA
* *
36095906 AGGTAAAATGACCGTAATTCCC-CTGTA
1 GGGTAAAATGACCGTAATGCCCTC-GTA
* ** *
36095933 GAGTAAAATGACCG-AAAACCCTCATA
1 GGGTAAAATGACCGTAATGCCCTCGTA
*
36095959 GGGTAAAATGACAGTAATGCCC-CTGTA
1 GGGTAAAATGACCGTAATGCCCTC-GTA
* * * *
36095986 AGGTAAAATGACCATAATACCCTTGTA
1 GGGTAAAATGACCGTAATGCCCTCGTA
36096013 GGGTAAAATGAC
1 GGGTAAAATGAC
36096025 TAAAAATCCT
Statistics
Matches: 200, Mismatches: 47, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
26 26 0.13
27 167 0.83
28 7 0.04
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCTCGTA
Found at i:36095832 original size:54 final size:54
Alignment explanation
Indices: 36095745--36096062 Score: 221
Period size: 54 Copynumber: 5.9 Consensus size: 54
36095735 TATATGATGG
* * * * * * *
36095745 GGTACAATGACTGTTATGCCCTCGTAGGGTAAAATGATCGTAATGCCCCCGTAA
1 GGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTAA
* ** * * *
36095799 GGTAGAATGACCGTAATGCCCTTATAGGGTAAAATGATC-AAAAACCCCC-TATA
1 GGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTA-A
* * * * *
36095852 GGATAAAATGATCGTAATGCCCCCATATGGTAAAATAACCGTAATGCCCCTGTAA
1 GG-TAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTAA
* ** * * * * *
36095907 GGTAAAATGACCGTAATTCCCCTGTAGAGTAAAATGACCG-AAAACCCTCATAG
1 GGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTAA
* ** * * ** *
36095960 GGTAAAATGACAGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTAA
*** * * *
36096014 GGTAAAATGACTAAAAAT-CCTCCATAGGGTAAAATGATCGTAATGCCCC
1 GGTAAAATGAC-CGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCC
36096063 TAGAGGGTAA
Statistics
Matches: 208, Mismatches: 50, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
52 2 0.01
53 52 0.25
54 139 0.67
55 13 0.06
56 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (54 bp):
GGTAAAATGACCGTAATGCCCCCATAGGGTAAAATGACCGTAATACCCCCGTAA
Found at i:36095929 original size:81 final size:81
Alignment explanation
Indices: 36095763--36096063 Score: 304
Period size: 81 Copynumber: 3.7 Consensus size: 81
36095753 GACTGTTATG
* * * * * * *
36095763 CCCTCGTAGGGTAAAATGATCGTAATGCCCCCGTAAGGTAGAATGACCGTAATGCCCTTATAGGG
1 CCCT-GTAGGATAAAATGATCGTAATGCCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGG
* *
36095828 TAAAATGATCA-AAAACC
65 TAAAATGACCATAATA-C
* * *
36095845 CCCTATAGGATAAAATGATCGTAATGCCCCCATATGGTAAAATAACCGTAATGCCCCTGTAAGGT
1 CCCTGTAGGATAAAATGATCGTAATGCCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGGT
* *
36095910 AAAATGACCGTAATTC
66 AAAATGACCATAATAC
* ** * *
36095926 CCCTGTA-GAGTAAAATGACCG-AAAACCCTCATAGGGTAAAATGACAGTAATGCCCCTGTAAGG
1 CCCTGTAGGA-TAAAATGATCGTAATGCCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGG
36095989 TAAAATGACCATAATAC
65 TAAAATGACCATAATAC
* * *** * *
36096006 CCTTGTAGGGTAAAATGACTAAAAAT-CCTCCATAGGGTAAAATGATCGTAATGCCCCT
1 CCCTGTAGGATAAAATGA-TCGTAATGCCCCCATAGGGTAAAATGACCGTAATGCCCCT
36096064 AGAGGGTAAA
Statistics
Matches: 181, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
80 67 0.37
81 106 0.59
82 8 0.04
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (81 bp):
CCCTGTAGGATAAAATGATCGTAATGCCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGGT
AAAATGACCATAATAC
Found at i:36096069 original size:27 final size:27
Alignment explanation
Indices: 36095770--36096077 Score: 154
Period size: 27 Copynumber: 11.5 Consensus size: 27
36095760 ATGCCCTCGT
36095770 AGGGTAAAATGATCGTAATGCCCCCGTA-
1 AGGGTAAAATGATCGTAATG-CCCC-TAG
* * * *
36095798 A-GGTAGAATGACCGTAATGCCCTTAT
1 AGGGTAAAATGATCGTAATGCCCCTAG
** ** *
36095824 AGGGTAAAATGATCAAAAACCCCCTAT
1 AGGGTAAAATGATCGTAATGCCCCTAG
* * *
36095851 AGGATAAAATGATCGTAATGCCCCCAT
1 AGGGTAAAATGATCGTAATGCCCCTAG
* * *
36095878 ATGGTAAAATAACCGTAATGCCCCT-G
1 AGGGTAAAATGATCGTAATGCCCCTAG
* * *
36095904 TAAGGTAAAATGACCGTAATTCCCCT-G
1 -AGGGTAAAATGATCGTAATGCCCCTAG
* * ** *
36095931 TAGAGTAAAATGACCG-AA-AACCCTCAT
1 -AGGGTAAAATGATCGTAATGCCCCT-AG
36095958 AGGGTAAAATGA-CAGTAATGCCCCT-G
1 AGGGTAAAATGATC-GTAATGCCCCTAG
* * * * *
36095984 TAAGGTAAAATGACCATAAT-ACCCTTG
1 -AGGGTAAAATGATCGTAATGCCCCTAG
*** *
36096011 TAGGGTAAAATGACTAAAAAT-CCTCC-AT
1 -AGGGTAAAATGA-TCGTAATGCC-CCTAG
36096039 AGGGTAAAATGATCGTAATGCCCCTAG
1 AGGGTAAAATGATCGTAATGCCCCTAG
36096066 AGGGT-AAATGAT
1 AGGGTAAAATGAT
36096078 TATTTTGCCC
Statistics
Matches: 217, Mismatches: 48, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
25 7 0.03
26 35 0.16
27 162 0.75
28 11 0.05
29 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGATCGTAATGCCCCTAG
Found at i:36096076 original size:80 final size:80
Alignment explanation
Indices: 36095874--36096063 Score: 265
Period size: 80 Copynumber: 2.4 Consensus size: 80
36095864 CGTAATGCCC
* * * *
36095874 CCATATGGTAAAATAACCGTAATGCCCCTGTAAGGTAAAATGACCGTAATTCCCCTGTAGAGTAA
1 CCATAGGGTAAAATGA-CGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTGTAGAGTAA
*
36095939 AATGACCGAAAACCCT
65 AATGACCAAAAACCCT
* *
36095955 -CATAGGGTAAAATGACAGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCTTGTAGGGTAA
1 CCATAGGGTAAAATGAC-GTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTGTAGAGTAA
* *
36096019 AATGACTAAAAATCCT
65 AATGACCAAAAACCCT
36096035 CCATAGGGTAAAATGATCGTAATGCCCCT
1 CCATAGGGTAAAATGA-CGTAATGCCCCT
36096064 AGAGGGTAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 69 0.71
81 26 0.27
82 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.23
Consensus pattern (80 bp):
CCATAGGGTAAAATGACGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTGTAGAGTAAA
ATGACCAAAAACCCT
Found at i:36096086 original size:26 final size:27
Alignment explanation
Indices: 36096057--36096109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
36096047 ATGATCGTAA
36096057 TGCCCCTAGAGGGTAAATGATT-ATTT
1 TGCCCCTAGAGGGTAAATGATTGATTT
* *
36096083 TGCCCCTCGAGTGTAAATGATTGATTT
1 TGCCCCTAGAGGGTAAATGATTGATTT
36096110 GTCTATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGATTGATTT
Found at i:36096131 original size:24 final size:24
Alignment explanation
Indices: 36096099--36096156 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
36096089 TCGAGTGTAA
*
36096099 ATGATTGATTTGTCTATGATTCGT
1 ATGACTGATTTGTCTATGATTCGT
* *
36096123 ATGACTGATTTGTCTGTGATTTGT
1 ATGACTGATTTGTCTATGATTCGT
36096147 ATGACTGATT
1 ATGACTGATT
36096157 CTGAGCATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.09, G:0.22, T:0.48
Consensus pattern (24 bp):
ATGACTGATTTGTCTATGATTCGT
Found at i:36096368 original size:32 final size:32
Alignment explanation
Indices: 36096327--36096513 Score: 187
Period size: 32 Copynumber: 5.9 Consensus size: 32
36096317 GTTGCAATGC
** *
36096327 TACTGATGGCTTTGTACCGATCACGTTATCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* **
36096359 TACTGATGGCTTTGTACTGATCATATTATTGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
36096391 TATTGATGGCTTTGTGCTGATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
36096423 T-CTGATAGCTATGTACCGATCATATTACCAT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* ** * * *
36096454 TACTGATGGCTGTGTGTCGATCATATCACTGC
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* *
36096486 TACTGATGGCTTTGTGCCAATCATATTA
1 TACTGATGGCTTTGTACCGATCATATTA
36096514 TTGTACTTAT
Statistics
Matches: 128, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
31 25 0.20
32 103 0.80
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATATTACCGT
Found at i:36096493 original size:95 final size:95
Alignment explanation
Indices: 36096329--36096513 Score: 230
Period size: 95 Copynumber: 1.9 Consensus size: 95
36096319 TGCAATGCTA
* * * * * * * * *
36096329 CTGATGGCTTTGTACCGATCACGTTATCGTTACTGATGGCTTTGTACTGATCATATTATTGTTAT
1 CTGATAGCTATGTACCGATCACATTACCATTACTGATGGCTTTGTACTGATCATATCACTGCTAC
**
36096394 TGATGGCTTTGTGCTGATCATATTACCGTT
66 TGATGGCTTTGTGCCAATCATATTACCGTT
*
36096424 CTGATAGCTATGTACCGATCATATTACCATTACTGATGGCTGTGTGT-C-GATCATATCACTGCT
1 CTGATAGCTATGTACCGATCACATTACCATTACTGATGGCT-T-TGTACTGATCATATCACTGCT
36096487 ACTGATGGCTTTGTGCCAATCATATTA
64 ACTGATGGCTTTGTGCCAATCATATTA
36096514 TTGTACTTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
95 71 0.93
96 2 0.03
97 3 0.04
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (95 bp):
CTGATAGCTATGTACCGATCACATTACCATTACTGATGGCTTTGTACTGATCATATCACTGCTAC
TGATGGCTTTGTGCCAATCATATTACCGTT
Found at i:36099847 original size:29 final size:28
Alignment explanation
Indices: 36099813--36099920 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
36099803 TATTACAGTG
36099813 GCTATCTCAGTTAAATGAATGTCTTTGT
1 GCTATCTCAGTTAAATGAATGTCTTTGT
* * *
36099841 GCCTATCTCTGTTAGATGGATGTCTTTGT
1 G-CTATCTCAGTTAAATGAATGTCTTTGT
* * * * *
36099870 GGTGATCTCTGTTAAATGGATGCCTTTCT
1 GCT-ATCTCAGTTAAATGAATGTCTTTGT
*
36099899 GGCTATCTCAGCTAAATGAATG
1 -GCTATCTCAGTTAAATGAATG
36099921 GTTTGTGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
28 2 0.03
29 62 0.94
30 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (28 bp):
GCTATCTCAGTTAAATGAATGTCTTTGT
Found at i:36106068 original size:29 final size:29
Alignment explanation
Indices: 36106024--36106105 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
36106014 CACTATGAGC
*
36106024 CAATGATTACAGTTATCAGGTACTTT-TTAA
1 CAATG-TTATAGTTATCAGGTACTTTCTT-A
* ***
36106054 CGATGTTATAGTTATCAAACACTTTCTTA
1 CAATGTTATAGTTATCAGGTACTTTCTTA
*
36106083 CAATGTTATATTTATCAGGTACT
1 CAATGTTATAGTTATCAGGTACT
36106106 ATGTATCAGT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
29 35 0.85
30 6 0.15
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (29 bp):
CAATGTTATAGTTATCAGGTACTTTCTTA
Found at i:36110672 original size:40 final size:40
Alignment explanation
Indices: 36110619--36110890 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
36110609 CAGCCGCAAA
* * * *
36110619 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
36110659 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
36110699 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
36110739 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
36110779 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
36110819 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
36110859 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
36110891 ATCCAATGTT
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:36119970 original size:104 final size:104
Alignment explanation
Indices: 36119788--36119995 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
36119778 TGCGATCGTG
*
36119788 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTTTTCCTACCCT
1 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
* * *
36119853 CCATATATGAGGAATGTATCCTTAGTCCTTCACAGGTAC
66 CCATATATAAGGAATGCATCCTTAGTCCTTCACAAGTAC
36119892 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
1 AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
36119957 CCATATATAAGGAATGCATCCTTAGTCCTTCACAAGTAC
66 CCATATATAAGGAATGCATCCTTAGTCCTTCACAAGTAC
36119996 TTAAGGATAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (104 bp):
AATCATCCTTGTAGGTTTAGAAGTTGGCATCAGTGTAACCTTTTACACTCAGCTCTTCCTACCCT
CCATATATAAGGAATGCATCCTTAGTCCTTCACAAGTAC
Found at i:36126420 original size:28 final size:28
Alignment explanation
Indices: 36126355--36126505 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
36126345 GAGATTGGCG
* * * *
36126355 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
36126384 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
36126412 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36126440 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
36126468 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
36126495 CTGAGTGTGCG
1 CTAAGTGTGCG
36126506 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:36134771 original size:28 final size:28
Alignment explanation
Indices: 36134731--36134884 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
36134721 TAAATTGTAC
36134731 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
36134759 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36134787 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36134815 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36134843 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36134870 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36134885 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.20
28 98 0.80
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:36134797 original size:56 final size:55
Alignment explanation
Indices: 36134706--36134884 Score: 268
Period size: 56 Copynumber: 3.2 Consensus size: 55
36134696 GAGATTGGCG
* * * *
36134706 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATGTAGCA
*
36134763 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATGTAGCA
*
36134819 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATGTAGCA
*
36134874 CTGAGTGTGCG
1 CTAAGTGTGCG
36134885 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTGATTATGTAGCA
Found at i:36141431 original size:53 final size:53
Alignment explanation
Indices: 36141368--36141520 Score: 252
Period size: 53 Copynumber: 2.9 Consensus size: 53
36141358 ATGTGGAAGA
*
36141368 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAATATTCT
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
* * *
36141421 GCATTACTTTGTATTTCATCACCTTCATCTTCTCTAGAATTGAGAAACATTCT
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
* *
36141474 GCATTACTTTTTATTTCATCACCTTCGTCTTTTCTAGCATTGACAAA
1 GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAA
36141521 GATTATTCTT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 91 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (53 bp):
GCATTACTTTGTATTTCATCACCTTCGTCTTCTCTAGCATTGACAAACATTCT
Found at i:36144671 original size:25 final size:25
Alignment explanation
Indices: 36144637--36144689 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
36144627 CTATTCATTG
*
36144637 TATTGTGATTAATGATGTTTCTAGT
1 TATTGTGATTAATAATGTTTCTAGT
36144662 TATTGTGATTAATAATGTTTCTAGT
1 TATTGTGATTAATAATGTTTCTAGT
36144687 TAT
1 TAT
36144690 ATATGAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (25 bp):
TATTGTGATTAATAATGTTTCTAGT
Found at i:36150257 original size:6 final size:6
Alignment explanation
Indices: 36150246--36150274 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
36150236 ATTCTCCTTT
36150246 TCTCCA TCTCCA TCTCCA TCTCCA TCTCC
1 TCTCCA TCTCCA TCTCCA TCTCCA TCTCC
36150275 CCTTCCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.52, G:0.00, T:0.34
Consensus pattern (6 bp):
TCTCCA
Found at i:36150817 original size:17 final size:18
Alignment explanation
Indices: 36150795--36150837 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
36150785 TTTTTAATAA
36150795 AACTTTTATAA-TTTTAT
1 AACTTTTATAATTTTTAT
*
36150812 AAC-TTTAAAATTTTTAT
1 AACTTTTATAATTTTTAT
*
36150829 AAATTTTAT
1 AACTTTTAT
36150838 TTATAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.29
17 11 0.52
18 4 0.19
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
AACTTTTATAATTTTTAT
Found at i:36150842 original size:13 final size:13
Alignment explanation
Indices: 36150824--36150850 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36150814 CTTTAAAATT
36150824 TTTATAAATTTTA
1 TTTATAAATTTTA
36150837 TTTATAAATTTTA
1 TTTATAAATTTTA
36150850 T
1 T
36150851 GGTTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTATAAATTTTA
Found at i:36157701 original size:60 final size:60
Alignment explanation
Indices: 36157499--36157704 Score: 159
Period size: 60 Copynumber: 3.4 Consensus size: 60
36157489 TGCCTTTATG
* * * * * * * * *
36157499 GAAAAACTCTGGATAGGAAAGCCTTTGTGGCGAG-AGCTAAATATAAATGATGCCTTTGTG
1 GAAAAAATCTAGAAAGGAAAGCCTTTGTGGCAAGTA-CTGAATGTAAAAGATGCCCTTGTA
* * * * ** *
36157559 GAAAAATTCTAGACA-TAAAACCATTTGTGGTGAGTACTGAATGTAAAAGATGCCTTTGTA
1 GAAAAAATCTAGAAAGGAAAGCC-TTTGTGGCAAGTACTGAATGTAAAAGATGCCCTTGTA
* * * *
36157619 GCAAAAATTTGGATAGGAAAGCCTTTGTGGCAAGTACTGAATGT-AAAGAATGCCCTTGTA
1 GAAAAAATCTAGAAAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAAG-ATGCCCTTGTA
*
36157679 -AAAAAACTCTAGAAAGGTAAGCCTTT
1 GAAAAAA-TCTAGAAAGGAAAGCCTTT
36157705 ATGGAAACCT
Statistics
Matches: 116, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
59 14 0.12
60 96 0.83
61 6 0.05
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (60 bp):
GAAAAAATCTAGAAAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAAGATGCCCTTGTA
Found at i:36157873 original size:28 final size:29
Alignment explanation
Indices: 36157812--36157873 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
36157802 AAAACGAAAC
**
36157812 ACCTT-TGTGGAAATCTTTGTCAAAGGAA
1 ACCTTCTGTGGAAATCTTCATCAAAGGAA
*
36157840 AGCTTCTGTGGAAATCTTCAT-AAAGGAA
1 ACCTTCTGTGGAAATCTTCATCAAAGGAA
36157868 ACCTTC
1 ACCTTC
36157874 GTGCCTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (29 bp):
ACCTTCTGTGGAAATCTTCATCAAAGGAA
Found at i:36167189 original size:16 final size:16
Alignment explanation
Indices: 36167168--36167198 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36167158 AATATGGCTA
36167168 GTTTGATCCCTATTGG
1 GTTTGATCCCTATTGG
36167184 GTTTGATCCCTATTG
1 GTTTGATCCCTATTG
36167199 AAAAGAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (16 bp):
GTTTGATCCCTATTGG
Found at i:36167863 original size:31 final size:31
Alignment explanation
Indices: 36167775--36167891 Score: 92
Period size: 31 Copynumber: 3.7 Consensus size: 31
36167765 CATGGCATCT
* * *
36167775 AGAA-AGAAAGTCCGCTAGGACAGTAAACAC
1 AGAACAGATAGTCCGTTAGGACAATAAACAC
* * * * *
36167805 AAAACAAACAAAGTTCGTTGGGACAATAAACAC
1 AGAAC--AGATAGTCCGTTAGGACAATAAACAC
* * *
36167838 ATAATAGATAGTCCGTTAGGACAATAAGCAC
1 AGAACAGATAGTCCGTTAGGACAATAAACAC
* *
36167869 AGAACAGATAGTCCATCAGGACA
1 AGAACAGATAGTCCGTTAGGACA
36167892 GGAAGCACGT
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
30 3 0.04
31 40 0.60
33 24 0.36
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.15
Consensus pattern (31 bp):
AGAACAGATAGTCCGTTAGGACAATAAACAC
Found at i:36169082 original size:14 final size:14
Alignment explanation
Indices: 36169057--36169102 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
36169047 AAGAGTGTGA
36169057 TATTAT-TGATATG
1 TATTATGTGATATG
36169070 TGA-TATGTGATATG
1 T-ATTATGTGATATG
*
36169084 TATTATGTTATATG
1 TATTATGTGATATG
36169098 ATATT
1 -TATT
36169103 GAATATTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 5 0.18
14 19 0.68
15 4 0.14
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (14 bp):
TATTATGTGATATG
Found at i:36174699 original size:54 final size:54
Alignment explanation
Indices: 36174605--36174712 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
36174595 TTCGAAATCA
* *
36174605 AGACACATGGCCGTGTCCCAACCCATGTCCTTGCCCGTGTAACTCACTGACTTG
1 AGACACACGGCCGTGTCCCAACCCATGTCCTTGCCCGTGTAACTCACTAACTTG
* * * * *
36174659 AGACACACGGTCGTGTCCCAACCCGTGT-CTCTGTCTGTGTAACTCTCTAACTTG
1 AGACACACGGCCGTGTCCCAACCCATGTCCT-TGCCCGTGTAACTCACTAACTTG
36174713 GGCCACATGG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
53 2 0.04
54 44 0.96
ACGTcount: A:0.19, C:0.33, G:0.20, T:0.27
Consensus pattern (54 bp):
AGACACACGGCCGTGTCCCAACCCATGTCCTTGCCCGTGTAACTCACTAACTTG
Found at i:36177196 original size:90 final size:90
Alignment explanation
Indices: 36177051--36177230 Score: 324
Period size: 90 Copynumber: 2.0 Consensus size: 90
36177041 CACTGCTAAA
*
36177051 CTAACCTCGTCAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
1 CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
*
36177116 TCACTATTTGACATCCTGGCTATCG
66 TCACTATTTGACATCCTGACTATCG
*
36177141 CTAACCTTGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
1 CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
*
36177206 TCGCTATTTGACATCCTGACTATCG
66 TCACTATTTGACATCCTGACTATCG
36177231 GGTCGTTACA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (90 bp):
CTAACCTCGTAAATATTAAATAAAAATATTTACAGGTTAATTTTATGGAAATGGAGTCACGAATC
TCACTATTTGACATCCTGACTATCG
Found at i:36180746 original size:39 final size:39
Alignment explanation
Indices: 36180589--36180758 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
36180579 GGACTAAGAT
* * *
36180589 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
36180629 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
36180669 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
36180709 CCGAAGGCATTGTGTGAGTTACTAAAACTGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
36180748 CCGAAGGCATT
1 CCGAAGGCATT
36180759 TGAACAAGGA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 37 0.32
40 75 0.65
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:36189438 original size:26 final size:23
Alignment explanation
Indices: 36189380--36189427 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
36189370 AATTAGGAGA
36189380 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
36189403 TAGAAATTATTAAAATGTGATTT
1 TAGAAATTATTAAAATGTGATTT
36189426 TA
1 TA
36189428 TACTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (23 bp):
TAGAAATTATTAAAATGTGATTT
Found at i:36196340 original size:37 final size:37
Alignment explanation
Indices: 36196290--36196368 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36196280 TTATTACGAA
* *
36196290 GTCTTACCCGGACATAATCT-CCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAT-TGCCACACGAAGTCATCGG
*
36196327 GTCTTACCCGGACAAAATTGCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTGCCACACGAAGTCATCGG
36196364 GTCTT
1 GTCTT
36196369 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTGCCACACGAAGTCATCGG
Found at i:36196565 original size:47 final size:47
Alignment explanation
Indices: 36196487--36196653 Score: 244
Period size: 47 Copynumber: 3.6 Consensus size: 47
36196477 CCCTTCGGGA
* * * * * *
36196487 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36196534 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36196581 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36196628 CTTATCACATATATACGCTTTCACAT
1 CTTATCACATATATACACTTTCACAT
36196654 CACATATATA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36196657 original size:21 final size:21
Alignment explanation
Indices: 36196631--36196674 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36196621 ATTAGGCCTT
36196631 ATCACATATATACGCTTTCAC
1 ATCACATATATACGCTTTCAC
36196652 ATCACATATATACGCTTTCAC
1 ATCACATATATACGCTTTCAC
36196673 AT
1 AT
36196675 TCATCACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (21 bp):
ATCACATATATACGCTTTCAC
Found at i:36196663 original size:68 final size:68
Alignment explanation
Indices: 36196584--36196721 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
36196574 ATTAGGCCTT
* * *
36196584 ATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTT
1 ATCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCT
36196649 CAC
66 CAC
36196652 ATCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCT
1 ATCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCT
36196717 CAC
66 CAC
36196720 AT
1 AT
36196722 TCATCACGTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (68 bp):
ATCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCT
CAC
Found at i:36196691 original size:115 final size:115
Alignment explanation
Indices: 36196538--36196757 Score: 395
Period size: 115 Copynumber: 1.9 Consensus size: 115
36196528 CTCGGCCCTG
* * *
36196538 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTC
1 TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCTC
36196603 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACA
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACA
*
36196653 TCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCTC
1 TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCTC
*
36196718 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATA
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
36196758 TATACACTTT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 100 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (115 bp):
TCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTCTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACA
Found at i:36196705 original size:47 final size:47
Alignment explanation
Indices: 36196652--36196757 Score: 176
Period size: 47 Copynumber: 2.3 Consensus size: 47
36196642 ACGCTTTCAC
* *
36196652 ATCACATATATACGCTTTCACATTCATCACATCGACCATTAGGCCTT
1 ATCACATATATACACTCTCACATTCATCACATCGACCATTAGGCCTT
* *
36196699 ATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTT
1 ATCACATATATACACTCTCACATTCATCACATCGACCATTAGGCCTT
36196746 ATCACATATATA
1 ATCACATATATA
36196758 TATACACTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.31
Consensus pattern (47 bp):
ATCACATATATACACTCTCACATTCATCACATCGACCATTAGGCCTT
Found at i:36200254 original size:40 final size:40
Alignment explanation
Indices: 36200209--36200404 Score: 189
Period size: 40 Copynumber: 4.9 Consensus size: 40
36200199 CGAATACACG
* * * *
36200209 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* *** *
36200249 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * * *
36200289 TCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
36200329 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATGG
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT-A
* * *
36200370 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGAACTTAGCCCGGA
36200405 CATCATTCAA
Statistics
Matches: 132, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
40 118 0.89
41 8 0.06
42 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
Found at i:36200748 original size:29 final size:29
Alignment explanation
Indices: 36200714--36200786 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
36200704 AATCAACCAT
* *
36200714 GCACACTTAGTGCCATGTACTTT-AAACTC
1 GCACACTTAGTGCCATGCA-TTTCAAACCC
*
36200743 GCACACTTAGTGCCATGCATTTCAAGCCC
1 GCACACTTAGTGCCATGCATTTCAAACCC
36200772 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
36200787 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCC
Found at i:36200829 original size:43 final size:43
Alignment explanation
Indices: 36200768--36200870 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
36200758 TGCATTTCAA
36200768 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36200811 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
36200854 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
36200871 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:36202786 original size:37 final size:37
Alignment explanation
Indices: 36202736--36202814 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36202726 TTATTACGAA
* *
36202736 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36202773 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36202810 GTCTT
1 GTCTT
36202815 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36203011 original size:47 final size:47
Alignment explanation
Indices: 36202933--36203248 Score: 470
Period size: 47 Copynumber: 6.6 Consensus size: 47
36202923 CCCTTCGGGA
* * * * * *
36202933 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36202980 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36203027 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36203074 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36203121 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36203168 CTTATCACATATATACACTCTCACATTTATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36203215 CTTATCACATATATATATACACTTTCACATTCAT
1 CTTATCAC----ATATATACACTTTCACATTCAT
36203249 TCAAATATAC
Statistics
Matches: 248, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 228 0.92
51 20 0.08
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36210993 original size:13 final size:11
Alignment explanation
Indices: 36210975--36211080 Score: 63
Period size: 10 Copynumber: 10.3 Consensus size: 11
36210965 TCATTTTTCC
36210975 AATAAAATATCAT
1 AATAAAAT-T-AT
36210988 AAT-AAATTAT
1 AATAAAATTAT
36210998 AATAAAA--AT
1 AATAAAATTAT
* *
36211007 ATTAAAAATATT
1 AATAAAATTA-T
36211019 AA-AAAATTAT
1 AATAAAATTAT
36211029 AA-AAAA-TAT
1 AATAAAATTAT
*
36211038 TA-AAAATT-T
1 AATAAAATTAT
36211047 ATATAAAA-TAT
1 A-ATAAAATTAT
*
36211058 AA-AAATTTAT
1 AATAAAATTAT
36211068 AATAAAA-TAT
1 AATAAAATTAT
36211078 AAT
1 AAT
36211081 TTTTTTCTAA
Statistics
Matches: 76, Mismatches: 7, Indels: 23
0.72 0.07 0.22
Matches are distributed among these distances:
9 20 0.26
10 27 0.36
11 20 0.26
12 6 0.08
13 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (11 bp):
AATAAAATTAT
Found at i:36210999 original size:10 final size:10
Alignment explanation
Indices: 36210986--36211080 Score: 65
Period size: 10 Copynumber: 9.5 Consensus size: 10
36210976 ATAAAATATC
*
36210986 ATAATAAATT
1 ATAATAAAAT
36210996 ATAATAAAA-
1 ATAATAAAAT
*
36211005 ATATTAAAAAT
1 ATAAT-AAAAT
36211016 ATTAA-AAAATT
1 A-TAATAAAA-T
36211027 ATAA-AAAAT
1 ATAATAAAAT
*
36211036 ATTA-AAAAT
1 ATAATAAAAT
*
36211045 TTATATAAAAT
1 ATA-ATAAAAT
*
36211056 ATAA-AAATTT
1 ATAATAAA-AT
36211066 ATAATAAAAT
1 ATAATAAAAT
36211076 ATAAT
1 ATAAT
36211081 TTTTTTCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
9 17 0.25
10 36 0.53
11 13 0.19
12 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:36211014 original size:9 final size:9
Alignment explanation
Indices: 36211000--36211063 Score: 67
Period size: 9 Copynumber: 6.8 Consensus size: 9
36210990 TAAATTATAA
36211000 TAAAAATAT
1 TAAAAATAT
36211009 TAAAAATAT
1 TAAAAATAT
36211018 TAAAAAATTAT
1 T-AAAAA-TAT
*
36211029 AAAAAATAT
1 TAAAAATAT
*
36211038 TAAAAATTT
1 TAAAAATAT
36211047 ATATAAAATA-
1 -TA-AAAATAT
36211057 TAAAAAT
1 TAAAAAT
36211064 TTATAATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.11
9 22 0.47
10 12 0.26
11 8 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAAATAT
Found at i:36211033 original size:20 final size:20
Alignment explanation
Indices: 36211001--36211077 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
36210991 AAATTATAAT
*
36211001 AAAAA-TATTAAAAATATTA
1 AAAAATTATAAAAAATATTA
36211020 AAAAATTATAAAAAATATTA
1 AAAAATTATAAAAAATATTA
* *
36211040 AAAATTTATATAAAATA-TA
1 AAAAATTATAAAAAATATTA
*
36211059 AAAATTTATAATAAAATAT
1 AAAAATTATAA-AAAATAT
36211078 AATTTTTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.33
20 34 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTATAAAAAATATTA
Found at i:36211034 original size:29 final size:30
Alignment explanation
Indices: 36210991--36211062 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 30
36210981 ATATCATAAT
36210991 AAATTATAATAAAAATATTAAAAATATTA-A-A
1 AAATTAT-A-AAAAATATTAAAAAT-TTATATA
36211022 AAATTATAAAAAATATTAAAAATTTATATA
1 AAATTATAAAAAATATTAAAAATTTATATA
36211052 AAA-TATAAAAA
1 AAATTATAAAAA
36211063 TTTATAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 3 0.08
29 24 0.62
30 5 0.13
31 7 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (30 bp):
AAATTATAAAAAATATTAAAAATTTATATA
Found at i:36211053 original size:12 final size:11
Alignment explanation
Indices: 36210986--36211069 Score: 55
Period size: 9 Copynumber: 8.4 Consensus size: 11
36210976 ATAAAATATC
36210986 ATAATAAATTAT
1 ATAA-AAATTAT
36210998 AATAAAAA-TAT
1 -ATAAAAATTAT
36211009 -TAAAAA-TAT
1 ATAAAAATTAT
36211018 -TAAAAAATTAT
1 AT-AAAAATTAT
36211029 A-AAAAA-TAT
1 ATAAAAATTAT
36211038 -TAAAAATT-T
1 ATAAAAATTAT
*
36211047 ATATAAA--AT
1 ATAAAAATTAT
36211056 ATAAAAATT-T
1 ATAAAAATTAT
36211066 ATAA
1 ATAA
36211070 TAAAATATAA
Statistics
Matches: 60, Mismatches: 2, Indels: 21
0.72 0.02 0.25
Matches are distributed among these distances:
9 26 0.43
10 21 0.35
11 6 0.10
12 3 0.05
13 4 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAAAAATTAT
Found at i:36211079 original size:20 final size:21
Alignment explanation
Indices: 36211011--36211077 Score: 104
Period size: 20 Copynumber: 3.3 Consensus size: 21
36211001 AAAAATATTA
*
36211011 AAAATATTAAAAAATTATAA-
1 AAAATATTAAAAATTTATAAT
36211031 AAAATATTAAAAATTTAT-AT
1 AAAATATTAAAAATTTATAAT
36211051 AAAATA-TAAAAATTTATAAT
1 AAAATATTAAAAATTTATAAT
36211071 AAAATAT
1 AAAATAT
36211078 AATTTTTTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
19 12 0.28
20 31 0.72
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATATTAAAAATTTATAAT
Found at i:36211147 original size:10 final size:9
Alignment explanation
Indices: 36211134--36211221 Score: 56
Period size: 10 Copynumber: 9.4 Consensus size: 9
36211124 ATTAATATAT
36211134 TTATATAAAC
1 TTATA-AAAC
*
36211144 TTATAACTA-
1 TTATAA-AAC
*
36211153 TTATAAAAA
1 TTATAAAAC
*
36211162 TCATAAAAAC
1 TTAT-AAAAC
36211172 TTATAAATA-
1 TTATAAA-AC
36211181 TTATAAAAAC
1 TTAT-AAAAC
36211191 TTATAAAAAC
1 TTAT-AAAAC
*
36211201 TTATAAAAA
1 TTATAAAAC
*
36211210 TCAT-AAAC
1 TTATAAAAC
36211218 TTAT
1 TTAT
36211222 TTTTTTTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
8 7 0.11
9 25 0.40
10 31 0.49
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (9 bp):
TTATAAAAC
Found at i:36211171 original size:28 final size:29
Alignment explanation
Indices: 36211140--36211216 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
36211130 ATATTTATAT
*
36211140 AAACTTATAACTATTATAAAAA-TCATAA
1 AAACTTATAAATATTATAAAAACTCATAA
*
36211168 AAACTTATAAATATTATAAAAACTTATAA
1 AAACTTATAAATATTATAAAAACTCATAA
* *
36211197 AAACTTATAAAAATCATAAA
1 AAACTTATAAATATTATAAA
36211217 CTTATTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 21 0.48
29 23 0.52
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (29 bp):
AAACTTATAAATATTATAAAAACTCATAA
Found at i:36211216 original size:19 final size:19
Alignment explanation
Indices: 36211153--36211209 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
36211143 CTTATAACTA
*
36211153 TTATAAAAATCATAAAAAC
1 TTATAAAAATTATAAAAAC
*
36211172 TTATAAATATTATAAAAAC
1 TTATAAAAATTATAAAAAC
36211191 TTATAAAAACTTATAAAAA
1 TTATAAAAA-TTATAAAAA
36211210 TCATAAACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 25 0.74
20 9 0.26
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (19 bp):
TTATAAAAATTATAAAAAC
Found at i:36211758 original size:9 final size:9
Alignment explanation
Indices: 36211690--36211770 Score: 65
Period size: 9 Copynumber: 8.6 Consensus size: 9
36211680 ATTTTTATAG
*
36211690 TTTATATTT
1 TTTATAATT
* *
36211699 TTTAAAATA
1 TTTATAATT
*
36211708 TTTAGAATT
1 TTTATAATT
36211717 TATTA-AATTT
1 T-TTATAA-TT
36211727 ATTTATAAGTT
1 -TTTATAA-TT
36211738 TTTATAAGTT
1 TTTATAA-TT
36211748 TTTATAATT
1 TTTATAATT
*
36211757 TTTATGATT
1 TTTATAATT
36211766 TTTAT
1 TTTAT
36211771 TAGAAAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
9 31 0.51
10 25 0.41
11 5 0.08
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTATAATT
Found at i:36211767 original size:18 final size:20
Alignment explanation
Indices: 36211728--36211770 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
36211718 ATTAAATTTA
36211728 TTTATAAGTTTTTATAAGTT
1 TTTATAAGTTTTTATAAGTT
*
36211748 TTTATAA-TTTTTATGA-TT
1 TTTATAAGTTTTTATAAGTT
36211766 TTTAT
1 TTTAT
36211771 TAGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 8 0.36
20 7 0.32
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TTTATAAGTTTTTATAAGTT
Found at i:36232555 original size:617 final size:617
Alignment explanation
Indices: 36217913--36236273 Score: 33706
Period size: 616 Copynumber: 30.0 Consensus size: 617
36217903 TGGGTATGAT
*
36217913 TGTTATTAGTTCCTTTGGTCATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
* *
36217978 TTCAAGGGCACATTTTTTCTATTGATCGTATGGAATTTTTGTTCTACGATTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
* * * *
36218043 GAATGGACTTGTT-AATGAGCATAAGGCTAAGGTAGA-TTTCAGATG-AACGAATTAC-TTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36218104 AATAGTGAT-GGTTGGAAATTTTTGTTGTTGGTGAAAGATCGGGATTAATGTCC-ATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36218167 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGAT-AATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36218231 CAATTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* * *
36218296 AAAAAGTTGTCTGGTTTACCACCAG-ATATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAC
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36218360 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* * *
36218425 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCCAATGTATCTCTGTAAGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36218490 TTGCGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36218522 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTCTAGATGTCCCATTAT-G
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
*
36218586 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGATTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*
36218651 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTATATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* *
36218716 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGATCTGGATTAATGT-CAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36218780 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36218845 CAGTTAGTAAGGATTTAAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36218910 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAG-TTAGTATTAAGCTCCATCATGGAAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36218974 TGCACAGTGTGTATTGCGACCTATAGCATGACA-CAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36219038 TCAAGAGTTCCTTAATAG-AGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36219102 TTGTGAAGAAGAAGGAT-GTACGATGCA-ATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36219132 TGTTATTAG-TCCTTTGGTGATAGTGTGGAAGTG-ATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
*
36219195 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGATTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36219260 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTA-ATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36219324 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGA-CTGGATTAATGT-CAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36219387 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36219452 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36219517 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36219582 TGCACAGTGTG-ATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36219646 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36219711 TTGTGAAGAAGAAGGAT-GTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36219742 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTG-ATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36219806 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36219871 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36219936 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGA-C-GGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36219999 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36220064 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCAC-GTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36220128 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36220193 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36220258 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36220323 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36220355 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAGTAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36220420 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36220485 GTATGGACT-GTT-AGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36220548 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGA-C-GGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36220611 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36220676 CAGTTAGTAAGGATTT-AGAGTTCAGGATATTCTCAC-GTTAAGGATTCTCCTAACGTG-TTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36220738 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36220803 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36220868 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTATGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36220933 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36220965 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36221030 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36221095 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAAC-AATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36221159 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36221224 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36221289 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36221354 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36221418 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36221483 TCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36221547 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36221579 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAGTAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36221644 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36221709 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36221774 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGA-CGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36221838 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36221903 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36221968 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36222032 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36222097 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36222162 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36222194 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36222259 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36222324 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36222389 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGA-CGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36222453 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36222518 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36222583 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36222647 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36222712 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36222777 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36222809 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36222874 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36222939 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36223004 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36223069 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36223134 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36223199 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAG-TTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* *
36223262 TGCACAGTGCGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36223327 TCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTA-CTCT-TAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36223389 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36223421 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36223486 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36223551 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36223616 AA-AGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACAGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36223680 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36223745 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36223810 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36223874 TGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36223939 TCAAGA-TT-TTTAATAGAAGGTTCATTCGACCGAGTGTA-CTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36224001 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
* *
36224033 TGTTATTAGTTCCTTTGGTGATAGTGTGAAAGTGAGTAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36224098 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*
36224163 GTAT-GACTGGTTTAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36224227 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
*
36224292 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTATGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36224357 CAGTTAGTAAGGA-TTGAGAGTTCAGGATATTCTCACGGTTAAGG-TTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36224420 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCT-CATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* *
36224484 TGCACATTGTGCATTGCGACCTATAGCATGACACGAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36224549 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36224614 TTGTGAAGAAGAA-GATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36224645 TGTTATTAG-TCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36224709 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36224774 GTAT-GACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36224838 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36224903 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36224968 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGATAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36225033 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCAT-GTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36225097 TGCACAGTGTGTATTG-GACCTATAGCATGACACCAAAAGAG-TCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36225160 TCAAGAGTTCCTTAATAGAAGGTT-ATTCGACCGAGTGTATCTATGTAGGGTGCACCAGTTTTG-
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36225223 TTGTGAAGAAGAA-GATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36225254 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36225319 TTCAAGGGCACA-TTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36225383 GTAT-GACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36225447 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36225512 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36225577 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTC-CGGATAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36225641 GAAAAGTTG-CT-GTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCAT-GTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36225703 TGCACAGTGTGTATTG-GACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36225767 TCAAGAGTTCCTTAATAGAAGGTT-ATTCGACCGAGTGTATCTATGTAGGGTGCACCAGTTTTG-
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36225830 TTGTGAAGAAGAACGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36225862 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36225927 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*
36225992 GTATGAACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36226057 AATAGTGATGGGTTGGAAATTTTTGTTG-TGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36226121 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGT-AACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36226185 CAGTTAGTAAGGATTTGA-AATTCAGGATATTCTCACGGTTAAGG-TTCTCCTAACGTG-TTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36226247 GAAAAGTTGTCTGGTTTA-CACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36226311 TGCACA-TGTGCATTGCGACCTATAGCATGACACCAAAAGAG-TCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
*
36226374 TCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTA-CTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36226437 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36226469 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAGTAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36226534 TTCAAGGG-ACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*
36226598 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACTAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36226663 -A-A-T-A--GGTTGGAAATTTTTGTTGTTGGTGAAAG-CC-GGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36226720 AACT-TGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36226784 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTTCTAAC--GTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* *
36226847 GAAAAGTTGACTGGTTTACCACCA-AACATGAAGTTGAGTTTAGTATTAAGATCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36226911 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAG-TTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36226975 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTA-GGTGCACCAGTTTT-T
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36227038 TTGTGAAGAAGAAGGAT-GTACGATGCA-ATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36227068 TGTTATTAGTT-CTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36227132 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
* *
36227197 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATATTGAGATGAAACTAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36227262 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACC-GGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36227326 AACTATGAAAGCT-AGAAGATGATAGGAAAAGG-TGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36227389 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTTCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36227454 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTT-AGTTTAGTATTAAGTTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36227517 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAG-TCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36227581 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCT-TGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36227645 TTGTGAAGAAGAA-GATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36227676 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36227741 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36227806 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGA-TTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36227870 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36227935 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36228000 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36228065 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAG-TTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36228129 TGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* *
36228194 TCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTA-CTCTATAGGGTGCACCAGTTTTG-
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36228256 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36228288 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36228353 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36228418 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36228483 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACC-GGATTAATGTCCAATGTGGCTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36228547 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36228612 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36228677 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTG-GTTTAGTATTATGCTCCATCAT-GTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* *
36228740 TGCACAGTGTGTATTG-GACCTATAGCATGACACC-AAAGAGCTCAAGGAGTTCAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* *
36228803 TCAAGAGTTCCTTAA-AGAAGGTTCATTCGACCGAGTGTATCTATGTA--ATGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36228865 TTGCGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36228897 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36228962 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
* * * *
36229027 GTATGGACTTG-TGTAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACTATTTACTTTTAG
131 GTATGGACTGGTTG-AGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAG
**
36229091 GAATAGTGATGGGTTCAAAATTTTTGTTGTTGGTGAAAGACC-GGATTAATGTCCAATGTGGTTT
195 GAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTT
36229155 CAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAAT
260 CAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAAT
36229220 TCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCC
325 TCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCC
*
36229285 TGAAAAGTTGTCTGGTTTACC-CCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCAAGGTA
390 TGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
*
36229349 TTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
455 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
*
36229414 TTCAAGA-TTTCTTAATAGAAGGTTCATTCGACCGAGTGTA-CTCTGTAGGGTGCACCA-TTTTG
520 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
36229476 TTTGTGAAGAAGAAGGATGGTACGATGCAGATA
585 TTTGTGAAGAAGAAGGATGGTACGATGCAGATA
* *
36229509 TGTTATTAGATCCTTTGGTGACAGTGT-GAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36229573 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36229638 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* *
36229703 AATAGTGATGGGTTCGAAATTTTTGTTGTTGGTGATAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
*
36229768 AACTATGAAAGCTGAGAAGATGATAGGAAAAGTTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
* * *
36229833 CAGTTAGTAAGGATTTTAGAGTTCAGGATATTCTCACGGTTAAGGATTCTTCTAACGGGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* * *
36229898 GAAAAGTTGTCTGGTTTACCACCAG-GCATGAAGTTGAGTTTACTATTAAGATCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36229962 TGCACAGTGTGCATTGCGACCTATAGCATGACACGAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36230027 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36230092 TTGTGAAGAAGAACGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36230124 TGTTATTAGATCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36230189 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36230254 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
36230319 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACC-GGATTAATGTCCAATGTGG-TTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36230382 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36230447 CAGTAAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* *
36230512 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTATGCTCCATCATAGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* * *
36230577 TGCACAGTGTGTATTGTGACCTATAGCATGACACCAAGAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* * *** *
36230642 TCAAGAGTTCCTTAAAAGAAGGTTCATTCGACCGAGTGTATCTATGTAATATTCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36230707 TTGCGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
36230739 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATT-TGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36230803 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36230868 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* * *
36230933 AATAGTGATGGGTTGGAAATTTTTGTTGTTCGTGAAAGACCGCGATTAATGTCCAATGTGGCTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36230998 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36231063 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36231128 GAAAAGTTGTCTGGTTTACCACCAGACCATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36231193 TGCATAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36231258 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36231323 TTGTGAAGAAGAACGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
* *
36231355 TGTTATTAGATCCTTTGGTGATAGTGTGGAAGTGAATAAAATTAATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36231420 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36231485 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36231550 AATAGTGACGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAAT-TGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36231614 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36231679 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* * *
36231744 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTCAGTGTAGTATTAAGCTCCATCAAGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* *
36231809 TGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGATCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* * * * *
36231874 TCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTATACCTCTATAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36231939 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36231971 TGTTATTAGTTCCTTTGGGGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36232036 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36232101 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* *
36232166 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGCGATTAATGTCCAATGTGGCTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36232231 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36232296 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGCATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36232361 GAAAAGTTGTCTGGTTTACCACCAGACCATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36232426 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* **
36232491 TCAAGAGTTCCTTAATAGAAGGTTCATTCGATCGAGTGTATCTCTGTAGGGTGCATTAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36232556 TTGTGAAGAAGAAGGATGGTACGACGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36232588 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAGTTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
* *
36232653 TTTAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTTTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36232718 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* * *
36232783 AATAGTGATGGGTTGGAAATTTTTGTTGTTCGTGAAAGACCGCGATTAATGTCCAATGTGGCTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36232848 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36232913 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGCATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
* *
36232978 GAAAAGTTGTCTGGTTTACCACCAGACCATGAAGTTGAGTTTAGTATTAAGCTCCATCATGATAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
36233043 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* **
36233108 TCAAGAGTTCCTTAATAGAAGGTTCATTCGATCGAGTGTATCTCTGTAGGGTGCATTAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36233173 TTGTGAAGAAGAAGGATGGTACGACGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36233205 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAGTTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
* * *
36233270 TTTAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTTTACGGTTTTATGTTATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*
36233335 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* *
36233400 AATAGTGATAGGTTGGAAATTTTTGTTGTTGGTTAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
* * *
36233465 AACTATGAAAGCTGAGAAGATGATGGGATAAGGTTTTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
* *
36233530 CAGTTAGTAAGGATTTGAGAGTTAAGGATATTCTCACGATTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36233595 GAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
*
36233659 TGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
36233724 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36233789 TTGTGAAGAAGAAGGATGGTACGATGCATATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
*
36233821 TGTTATTAGTTCCTTTGGTTATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
36233886 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
*** *
36233951 GTATGGACTTAATGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGTATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* **
36234016 AATAGTGATGGGTTAGAAATTTTTGTTGTTGGTCTAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
*
36234081 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTATCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
*
36234146 CAGTTAGTAAGGATTTAAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36234211 GAAATGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* * *
36234275 TGCACAGTGTGTATTGCGGCCTATAGCATGACACCAAAAGAGCTGAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* * * **
36234340 TCACGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCATTAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36234405 TTGTGAAGATGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
* *
36234437 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTAATGTTGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
*
36234502 TTCAAGGGCACATTTTCTTTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
36234567 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
* *
36234632 AATAGTGATGGGTTGGAAATTTTTGTTGTTTGTGAAAGACCGGGATTCATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
* *
36234697 AACTATGAAAGCTGAGCAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTGTATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
* *
36234762 CAGTTAGTAAGGATTTGAGAATTCA-TATTATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCC
326 CAGTTAGTAAGGATTTGAGAGTTCAGGA-TATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCC
36234826 TGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
390 TGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTA
*
36234891 TTGCACAGTGTGCATTGCGACCTACAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
455 TTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGT
* * *
36234956 TTCAAGAGGTCCTTAATTGAAGGTTCATTCGACCGAGTATATCTCTGTAGGGTGCA-CAGTTTTG
520 TTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTG
*
36235020 TTTGTGAAGAAGAAGAATGGTACGATGCAGATA
585 TTTGTGAAGAAGAAGGATGGTACGATGCAGATA
36235053 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
* * *
36235118 TTAAAGGGCACATTTTCTCTATTGATTGTATGGAATTTTTGTTCTACGATTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
* *
36235183 GTATGGACTGGTTGATTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAATGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36235248 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCAGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
* * *
36235313 AACTATGAAAGCTGAGAAGATGATGGGATAAGGTTGTGAATCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
36235378 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
*
36235443 GAAAAGTTGTCTGGTTTACCCCCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* * *
36235507 TGCACAGTGTGCATTGTGACCTATAGCATGACAACAAAAGAGCTCAAGGGGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* *
36235572 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGCATCTCTGTAGGGTGCACGAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
36235637 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
586 TTGTGAAGAAGAAGGATGGTACGATGCAGATA
* *
36235669 TGTTATTAGTTCCTTTGGTTATATTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
1 TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
*
36235734 TTCAAGGGAACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
66 TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
* *
36235799 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTAAGATGAAATGAATTACTTTGAGG
131 GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
*
36235864 AATAGTGATGGGTTGGAAATTTTTTTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
196 AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
36235929 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
261 AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
* *
36235994 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGATTAAGGATTCTCCTGACGTGTTTCCT
326 CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
36236059 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
391 GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
* *
36236124 TGCACAGTGTGTATTGCGACCTATAGCATGGCACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
456 TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
* * *
36236189 TCAAGAGTTCCTTAATAGAAGGTTGATTCGACCGAGTGTATCGCTGTATGGTGCACCAGTTTTGT
521 TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
*
36236254 TTGTGAAGAAGAATGATGGT
586 TTGTGAAGAAGAAGGATGGT
36236274 CTGATCCAGT
Statistics
Matches: 17279, Mismatches: 356, Indels: 226
0.97 0.02 0.01
Matches are distributed among these distances:
598 92 0.01
599 207 0.01
600 123 0.01
601 90 0.01
602 62 0.00
603 9 0.00
604 1 0.00
605 134 0.01
606 447 0.03
607 610 0.04
608 592 0.03
609 1429 0.08
610 785 0.05
611 1520 0.09
612 2316 0.13
613 587 0.03
614 1208 0.07
615 1722 0.10
616 3470 0.20
617 1875 0.11
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (617 bp):
TGTTATTAGTTCCTTTGGTGATAGTGTGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGG
TTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTG
GTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGG
AATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTC
AACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATT
CAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCACGGTTAAGGATTCTCCTAACGTGTTTCCT
GAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATCATGGTAT
TGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGATTTAGTT
TCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAGTTTTGT
TTGTGAAGAAGAAGGATGGTACGATGCAGATA
Found at i:36241964 original size:28 final size:28
Alignment explanation
Indices: 36241901--36242054 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
36241891 ATATTAAGTC
* *
36241901 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
36241928 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
36241956 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
36241984 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
36242012 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
36242040 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36242055 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:36245192 original size:18 final size:18
Alignment explanation
Indices: 36245141--36245192 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
36245131 CACCACGTTG
*
36245141 TGGATAAACCACACATCATTG
1 TGGATAAA--ACAC-TCATTA
* *
36245162 TGGATGAACCACTCATTA
1 TGGATAAAACACTCATTA
36245180 TGGATAAAACACT
1 TGGATAAAACACT
36245193 AGTAATAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 16 0.62
19 3 0.12
21 7 0.27
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (18 bp):
TGGATAAAACACTCATTA
Found at i:36246372 original size:18 final size:17
Alignment explanation
Indices: 36246328--36246366 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
36246318 AATATAGTGT
*
36246328 AAAGAAAAGAAAAAGAA
1 AAAGAAAATAAAAAGAA
36246345 AAAGAAAATAAAAA-AA
1 AAAGAAAATAAAAAGAA
36246361 AAAGAA
1 AAAGAA
36246367 TAAATAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (17 bp):
AAAGAAAATAAAAAGAA
Found at i:36248697 original size:46 final size:46
Alignment explanation
Indices: 36248630--36248721 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
36248620 TTCATTTTTA
36248630 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
1 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
36248676 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
1 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
36248722 CTTATTGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (46 bp):
AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
Found at i:36253001 original size:25 final size:25
Alignment explanation
Indices: 36252973--36253076 Score: 68
Period size: 25 Copynumber: 4.2 Consensus size: 25
36252963 CATGGAAATC
36252973 CTTTATGGTGAATTCTCTAGAAAGT
1 CTTTATGGTGAATTCTCTAGAAAGT
* ** * *
36252998 CTTTGTGGAAAATTCTTTGGAAAG-
1 CTTTATGGTGAATTCTCTAGAAAGT
* * *
36253022 CTTTTGTGGTGAATTCTTTAGACA-T
1 C-TTTATGGTGAATTCTCTAGAAAGT
* * * *
36253047 CCTCTATAGCGAATTCTCTAGAAAGC
1 -CTTTATGGTGAATTCTCTAGAAAGT
36253073 CTTT
1 CTTT
36253077 GTGGCGTGTT
Statistics
Matches: 58, Mismatches: 17, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
24 1 0.02
25 56 0.97
26 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (25 bp):
CTTTATGGTGAATTCTCTAGAAAGT
Found at i:36257189 original size:27 final size:27
Alignment explanation
Indices: 36257154--36257286 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 27
36257144 ACATTCAGAA
* *
36257154 TTTGTCACAAAGGC-ATCACTTTTAGAG
1 TTTGCCACAAAGGCTAT-TCTTTTAGAG
* *
36257181 ATCGCCACAAAGGCTATTCTTTTAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
* *
36257208 TTTACCACAAAGGCTATTCTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
*
36257235 TTTGCCACAAAGGTTATTCTTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTT-AGAG
** * *
36257263 TTCACCGCAAAGGTTATTCTTTTA
1 TTTGCCACAAAGGCTATTCTTTTA
36257287 TGTCATGTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 64 0.71
28 26 0.29
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
TTTGCCACAAAGGCTATTCTTTTAGAG
Found at i:36257273 original size:28 final size:28
Alignment explanation
Indices: 36257185--36257285 Score: 143
Period size: 27 Copynumber: 3.7 Consensus size: 28
36257175 TTAGAGATCG
36257185 CCACAAAGGCTATTCTTTT-AGAGTTTA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
*
36257212 CCACAAAGGCTATTC-TTTCAGAGTTTG
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
* *
36257239 CCACAAAGGTTATTCTTTTCAGAGTTCA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
* *
36257267 CCGCAAAGGTTATTCTTTT
1 CCACAAAGGCTATTCTTTT
36257286 ATGTCATGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 3 0.04
27 36 0.54
28 28 0.42
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (28 bp):
CCACAAAGGCTATTCTTTTCAGAGTTTA
Found at i:36263477 original size:24 final size:25
Alignment explanation
Indices: 36263449--36263497 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
36263439 AGAAATAATC
* *
36263449 TTTCAATTAAACTCTGTTTA-TTTA
1 TTTCAATCAAACTCTGATTAGTTTA
36263473 TTTCAATCAAACTCTGATTAGTTTA
1 TTTCAATCAAACTCTGATTAGTTTA
36263498 GATTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (25 bp):
TTTCAATCAAACTCTGATTAGTTTA
Found at i:36278513 original size:19 final size:19
Alignment explanation
Indices: 36278489--36278528 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
36278479 AACAAAGCTG
36278489 ATAATCAACATGCACTTTT
1 ATAATCAACATGCACTTTT
36278508 ATAATCAACATGCACTTTT
1 ATAATCAACATGCACTTTT
36278527 AT
1 AT
36278529 CAAGCCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAATCAACATGCACTTTT
Found at i:36288212 original size:22 final size:21
Alignment explanation
Indices: 36288183--36288225 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
36288173 CATTAAATAC
36288183 CCAAAACCCTAACTCTAAAAA
1 CCAAAACCCTAACTCTAAAAA
* *
36288204 CCAATAACCCTAATTTTAAAAA
1 CCAA-AACCCTAACTCTAAAAA
36288226 AACCTAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (21 bp):
CCAAAACCCTAACTCTAAAAA
Found at i:36289065 original size:9 final size:9
Alignment explanation
Indices: 36289053--36289107 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
36289043 TTTTAAATGT
36289053 TTTTTTATA
1 TTTTTTATA
36289062 TTTTTTATA
1 TTTTTTATA
36289071 -TTTTTA-A
1 TTTTTTATA
36289078 TTTTTTA-A
1 TTTTTTATA
***
36289086 -AAATTATA
1 TTTTTTATA
36289094 TTTTTTATA
1 TTTTTTATA
36289103 TTTTT
1 TTTTT
36289108 AAATAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 4 0.11
8 14 0.38
9 19 0.51
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:36289092 original size:23 final size:24
Alignment explanation
Indices: 36289066--36289130 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 24
36289056 TTTATATTTT
36289066 TTATATTTTTAATTTTTTAAA-AA
1 TTATATTTTTAATTTTTTAAATAA
*
36289089 TTATATTTTTTATATTTTTAAATAA
1 TTATATTTTTAAT-TTTTTAAATAA
* *
36289114 TTTTA-TTTTATTTTTTT
1 TTATATTTTTAATTTTTT
36289131 GAATTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.47
24 13 0.36
25 6 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TTATATTTTTAATTTTTTAAATAA
Found at i:36289099 original size:25 final size:25
Alignment explanation
Indices: 36289066--36289122 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 25
36289056 TTTATATTTT
*
36289066 TTATATTTTTAAT-TTTTTAAA-AA
1 TTATATTTTTTATATTTTTAAATAA
36289089 TTATATTTTTTATATTTTTAAATAA
1 TTATATTTTTTATATTTTTAAATAA
*
36289114 TTTTATTTT
1 TTATATTTT
36289123 ATTTTTTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 12 0.40
24 8 0.27
25 10 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTATATTTTTTATATTTTTAAATAA
Found at i:36289130 original size:32 final size:30
Alignment explanation
Indices: 36289040--36289147 Score: 105
Period size: 32 Copynumber: 3.5 Consensus size: 30
36289030 TTTTAAAAAC
*
36289040 TATTTTTAAATGTTT-TTTTATATTTTTTA
1 TATTTTTAAATTTTTATTTTATATTTTTTA
* **
36289069 TATTTTTAATTTTTTAAAAATTATATTTTTTA
1 TATTTTTAAATTTTT--ATTTTATATTTTTTA
36289101 TATTTTTAAATAATTTTATTTTAT-TTTTTTGA
1 TATTTTTAAAT--TTTTATTTTATATTTTTT-A
*
36289133 -ATTTTTAAAATTTTA
1 TATTTTTAAATTTTTA
36289148 AAATTTTAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
29 18 0.28
31 15 0.23
32 28 0.43
34 4 0.06
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (30 bp):
TATTTTTAAATTTTTATTTTATATTTTTTA
Found at i:36289154 original size:32 final size:33
Alignment explanation
Indices: 36289055--36289155 Score: 106
Period size: 32 Copynumber: 3.2 Consensus size: 33
36289045 TTAAATGTTT
**
36289055 TTTTATATTTTTTATATTTTTAATTTTTTAAAA
1 TTTTATATTTTTTATATTTTTAAAATTTTAAAA
*
36289088 -ATTATATTTTTTATATTTTTAAATAATTTT---A
1 TTTTATATTTTTTATATTTTT-AA-AATTTTAAAA
36289119 TTTTAT-TTTTTTGA-ATTTTTAAAATTTTAAAA
1 TTTTATATTTTTT-ATATTTTTAAAATTTTAAAA
36289151 TTTTA
1 TTTTA
36289156 ATTAATTGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
29 6 0.11
30 2 0.04
31 13 0.23
32 30 0.53
33 2 0.04
34 4 0.07
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (33 bp):
TTTTATATTTTTTATATTTTTAAAATTTTAAAA
Found at i:36289966 original size:114 final size:113
Alignment explanation
Indices: 36289646--36290518 Score: 971
Period size: 114 Copynumber: 7.7 Consensus size: 113
36289636 CGATCTTCGT
* * * * ** * *
36289646 AAAACACCGCTAAAGCACATAATTAGCGTCGCAATGCAAAAAGTGCCGCAAAATATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
36289711 AACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * *
36289760 AAAACGCCGCTAAAGCACA-GATTA-CGGCGCATTATAAAAAGCGCCGC-AAAAATATTAACAAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
36289822 AACGCATCGTTTGGTCTTGAGGTATTTTAGAATTAGTGGCGCTTAT-A
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * * * *
36289869 ATGAAACGCCGCTAACGAACATCATTAGCGGCACAATATAAAAAGCGTCGCAAAATATCTTAACC
1 A--AAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACC
*
36289934 AAAACGCAGCGTTTGG-CTTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
64 AAAACGCATCGTTTGGTC-TTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * ** *
36289985 AAAACGCCTCTAAAGCACACCATTAGCGGCATATTATACAAAGCGCCGCAAAAAATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * * * *
36290050 AATGCATCGTTTTGG-GTTGATGCA-ATTTAGAATTAGTGGCACTTATGGA
66 AACGCATCG-TTTGGTCTTGAGGTATA-TTAGAATTAGTGGCGCTTAT-GA
* * ** * *
36290099 AAAACGCCGCTAAAGCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAAAAATCTTAACTAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* *
36290164 AACGCATCGTTTTGG-GTTGAGGTAT-TTGAGAATTAGTGGCGCTTATAA
66 AACGCATCG-TTTGGTCTTGAGGTATATT-AGAATTAGTGGCGCTTATGA
* * *
36290212 TAAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCACCGCAAAATATCTTTACCA
1 -AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCA
36290277 AAACGCAGT-GTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
65 AAACGCA-TCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* ** * * * * *
36290327 CAAACGCCGCTAAAGCACAGAATTACCGGCGCATTATGAAAGGCGCCGTAAAAAATATTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * *
36290392 AACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTGGCAC-TA-GA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * *
36290438 GTAAAACGCC-ATGAAAGTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAAAAAAATCTTA
1 --AAAACGCCGCT-AAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGC--AAAAAATCTTA
**
36290502 ACCAAAACATATCGTTT
61 ACCAAAACGCATCGTTT
36290519 TAAACCGAAA
Statistics
Matches: 647, Mismatches: 89, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
109 2 0.00
111 74 0.11
112 23 0.04
113 73 0.11
114 439 0.68
115 34 0.05
116 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (113 bp):
AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
Found at i:36290279 original size:342 final size:341
Alignment explanation
Indices: 36289684--36290519 Score: 1098
Period size: 342 Copynumber: 2.4 Consensus size: 341
36289674 TCGCAATGCA
* * * **
36289684 AAAAGTGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTG
1 AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGAGCAAT-TTAGAATTAGTG
* * *
36289749 GCGCTTATGGAAAAACGCCGCTAAAGCACAGATTA-CGGCGCATTATAAAAAGCGCCGC-AAAAA
65 GCACTTATGGAAAAACGCCGCTAAAGCACACATTAGCGGCGCATTATACAAAGCGCCGCAAAAAA
* * *
36289812 TATTAACAAAAACGCATCG-TTTGGTCTTGAGGTATTTTAGAATTAGTGGCGCTTATAATGAAAC
130 TCTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAAC
* **
36289876 GCCGCTAACGAACATCATTAGCGGCACAATATAAAAAGCGTCGCAAAATATCTTAACCAAAACGC
195 GCCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAACGC
*
36289941 AGCGTTTGG-CTTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCTCTAAAGCACAC
260 AGCGTTTGGTC-TTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCACAC
* * *
36290005 CATTAGCGGCATATTAT-
324 AATTACCGGCACATTATG
* *
36290022 ACAAAGCGCCGCAAAAAATCTTAACCAAAATGCATCGTTTTGG-GTTGATGCAATTTAGAATTAG
1 A-AAAGCGCCGCAAAAAATCTTAACCAAAACGCATCG-TTTGGTCTTGA-GCAATTTAGAATTAG
* * *
36290086 TGGCACTTATGGAAAAACGCCGCTAAAGCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAA
63 TGGCACTTATGGAAAAACGCCGCTAAAGCACA-CATTAGCGGCGCATTATACAAAGCGCCGCAAA
* *
36290151 AAATCTTAACTAAAACGCATCGTTTTGG-GTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAA
127 AAATCTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAA
* * * *
36290215 AACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCACCGCAAAATATCTTTACCAAAA
192 AACGCCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAA
* *
36290280 CGCAGTGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGACAAACGCCGCTAAAGCAC
257 CGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCAC
* *
36290345 AGAATTACCGGCGCATTATG
322 ACAATTACCGGCACATTATG
* * * *
36290365 AAAGGCGCCGTAAAAAATATTAACCAAAACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTG
1 AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGA-GCAATTTAGAATTAGTG
* * * *
36290430 GCAC-TA-GAGTAAAACGCC-ATGAAAGTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAA
65 GCACTTATG-GAAAAACGCCGCT-AAAGCACA-CATTAGCGGCGCATTATACAAAGCGCCGC--A
* **
36290492 AAAAATCTTAACCAAAACATATCGTTTT
125 AAAAATCTTAACAAAAACGCATCGTTTT
36290520 AAACCGAAAC
Statistics
Matches: 433, Mismatches: 51, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
338 1 0.00
339 76 0.18
340 14 0.03
341 67 0.15
342 242 0.56
343 33 0.08
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (341 bp):
AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGAGCAATTTAGAATTAGTGG
CACTTATGGAAAAACGCCGCTAAAGCACACATTAGCGGCGCATTATACAAAGCGCCGCAAAAAAT
CTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACG
CCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAACGCA
GCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCACACAA
TTACCGGCACATTATG
Found at i:36290529 original size:20 final size:20
Alignment explanation
Indices: 36290501--36290538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36290491 AAAAAATCTT
*
36290501 AACCAAAACATATCGTTTTA
1 AACCAAAACATAACGTTTTA
*
36290521 AACCGAAACATAACGTTT
1 AACCAAAACATAACGTTT
36290539 CGTCTTGAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (20 bp):
AACCAAAACATAACGTTTTA
Found at i:36291277 original size:21 final size:21
Alignment explanation
Indices: 36291253--36291296 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36291243 AAGGGTACTT
* *
36291253 GGTTTA-ATGGTTTGAGTTTAA
1 GGTTTAGA-GGTTGGAGATTAA
36291274 GGTTTAGAGGTTGGAGATTAA
1 GGTTTAGAGGTTGGAGATTAA
36291295 GG
1 GG
36291297 GATAGGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (21 bp):
GGTTTAGAGGTTGGAGATTAA
Found at i:36292266 original size:191 final size:191
Alignment explanation
Indices: 36291931--36292310 Score: 618
Period size: 191 Copynumber: 2.0 Consensus size: 191
36291921 TGCAAATCCC
* * * * *
36291931 TAGACCTTTCACCTCTTCAACGATGATTTCCCCTCTTCTTGGTCGAATATCGCTTCTCGTTTGGG
1 TAGACCTTTCACCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
* *
36291996 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGACTCCGTATATGGCTGTTCATTT
66 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATTT
36292061 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
131 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
*
36292122 TAGACCTTTCAGCC-CTTCAACGACGATTTCCCCTCTTCTCGATCAAATATTGCTTCTCGTCTGG
1 TAGACCTTTCA-CCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGG
* *
36292186 GCTGACTGGTAAAAATCTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGTTGTTCATT
65 GCTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATT
* * * *
36292251 TTTTTGTTTGATTTTTTCTTTCTTTAATGCTCGCTTTGTTTTTCCTTTCTCTTTAAATTC
130 TTTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTC
36292311 TGTGTTGCTT
Statistics
Matches: 174, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
191 172 0.99
192 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.44
Consensus pattern (191 bp):
TAGACCTTTCACCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTGTTCATTT
TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
Found at i:36293292 original size:25 final size:25
Alignment explanation
Indices: 36293264--36293311 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
36293254 TTTTGAAGGG
36293264 ATTAA-TTAGATTTTTTAAATTATGT
1 ATTAATTTA-ATTTTTTAAATTATGT
36293289 ATTAATTTAATTTTTTAAATTAT
1 ATTAATTTAATTTTTTAAATTAT
36293312 AATGCAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
ATTAATTTAATTTTTTAAATTATGT
Found at i:36293647 original size:25 final size:25
Alignment explanation
Indices: 36293619--36293666 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36293609 AATATAGAAT
*
36293619 TTACATAAAATACAACTTACATATC
1 TTACATAAAACACAACTTACATATC
* *
36293644 TTACATAATACATAACTTACATA
1 TTACATAAAACACAACTTACATA
36293667 ATACAACACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (25 bp):
TTACATAAAACACAACTTACATATC
Found at i:36293664 original size:9 final size:9
Alignment explanation
Indices: 36293589--36293987 Score: 290
Period size: 9 Copynumber: 45.7 Consensus size: 9
36293579 ATCTTGCATA
36293589 ATAACTTAC
1 ATAACTTAC
*
36293598 ATAACATAC
1 ATAACTTAC
*
36293607 ATAA--TAT
1 ATAACTTAC
* *
36293614 AGAATTTAC
1 ATAACTTAC
**
36293623 ATAAAATAC
1 ATAACTTAC
36293632 --AACTTAC
1 ATAACTTAC
*
36293639 ATATCTTAC
1 ATAACTTAC
36293648 ATAA--TAC
1 ATAACTTAC
36293655 ATAACTTAC
1 ATAACTTAC
36293664 ATAA--TAC
1 ATAACTTAC
36293671 A-ACACTTAC
1 ATA-ACTTAC
* *
36293680 ACAACTTAA
1 ATAACTTAC
*
36293689 ATAACTTAT
1 ATAACTTAC
*
36293698 ATAACTTGC
1 ATAACTTAC
*
36293707 ATAACTTAT
1 ATAACTTAC
*
36293716 ATAA-TAAC
1 ATAACTTAC
*
36293724 ATAA-TAAC
1 ATAACTTAC
36293732 -TAACATAGTAC
1 ATAAC-T--TAC
** * *
36293743 ATTGCCTAA
1 ATAACTTAC
*
36293752 ATAACTAAC
1 ATAACTTAC
36293761 ATAACTTAC
1 ATAACTTAC
* *
36293770 ATAAATTAA
1 ATAACTTAC
36293779 ATAACTTAC
1 ATAACTTAC
*
36293788 ATAAGTTAC
1 ATAACTTAC
*
36293797 ATAAGTTAC
1 ATAACTTAC
* *
36293806 ATAAATTAA
1 ATAACTTAC
36293815 ATAACTTAC
1 ATAACTTAC
36293824 ATAACTTAC
1 ATAACTTAC
*
36293833 ATAGCTTAC
1 ATAACTTAC
* *
36293842 ATAAATTAA
1 ATAACTTAC
36293851 ATAACTTAC
1 ATAACTTAC
36293860 ATAACTTAC
1 ATAACTTAC
*
36293869 ATAACTTAA
1 ATAACTTAC
*
36293878 ATAACTTCC
1 ATAACTTAC
36293887 ATAA--TAC
1 ATAACTTAC
*
36293894 ATAACTTTC
1 ATAACTTAC
*
36293903 CTAACTTAC
1 ATAACTTAC
* *
36293912 ATTATTTAC
1 ATAACTTAC
36293921 ATAA--TAC
1 ATAACTTAC
** * *
36293928 ATTTCCTAA
1 ATAACTTAC
36293937 ATAACTTAC
1 ATAACTTAC
36293946 ATAACTTAC
1 ATAACTTAC
* *
36293955 ATAAATTAA
1 ATAACTTAC
36293964 ATAACTTAC
1 ATAACTTAC
36293973 ATAACTTAC
1 ATAACTTAC
36293982 ATAACT
1 ATAACT
36293988 CATTTATGGT
Statistics
Matches: 303, Mismatches: 68, Indels: 38
0.74 0.17 0.09
Matches are distributed among these distances:
6 1 0.00
7 36 0.12
8 10 0.03
9 251 0.83
10 1 0.00
11 2 0.01
12 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:36294009 original size:26 final size:26
Alignment explanation
Indices: 36293973--36294028 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
36293963 AATAACTTAC
*
36293973 ATAACTTACATAACTCATTTATGGTT
1 ATAAATTACATAACTCATTTATGGTT
36293999 ATAAATTACATAACTCATTTATGGTT
1 ATAAATTACATAACTCATTTATGGTT
36294025 ATAA
1 ATAA
36294029 CTGGCGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (26 bp):
ATAAATTACATAACTCATTTATGGTT
Found at i:36309992 original size:21 final size:21
Alignment explanation
Indices: 36309966--36310016 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
36309956 CTACAACTTA
36309966 AAGCAGAGGCGGCAGCGAGTG
1 AAGCAGAGGCGGCAGCGAGTG
*
36309987 AAGCAGAGGCTGCAGCGAGTG
1 AAGCAGAGGCGGCAGCGAGTG
36310008 AAGCAGAGG
1 AAGCAGAGG
36310017 TTCAAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGTG
Found at i:36310104 original size:66 final size:65
Alignment explanation
Indices: 36309987--36310117 Score: 151
Period size: 66 Copynumber: 2.0 Consensus size: 65
36309977 GCAGCGAGTG
* *
36309987 AAGCAGAGGCTGCAGCGAGTGAAGCAGAGGTTCAAAAGAAATATGAAGAACTCCAGCTA-CAACT
1 AAGCAGAGGCTGCAGCGAGAGAAGCAGAGG-TCAAAAGAAATACGAAGAACTCCAGC-AGCAACT
36310051 TA
64 TA
* * *
36310053 AAGCAGAGGCTGTAGCGAGAGAAGCAGA-G-CAGAGCAGAAAGTACGACGAACTCCAGCAGCAAC
1 AAGCAGAGGCTGCAGCGAGAGAAGCAGAGGTCA-A-AAGAAA-TACGAAGAACTCCAGCAGCAAC
36310116 TT
63 TT
36310118 CAGAGTATGA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
63 2 0.04
64 1 0.02
65 7 0.12
66 46 0.82
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (65 bp):
AAGCAGAGGCTGCAGCGAGAGAAGCAGAGGTCAAAAGAAATACGAAGAACTCCAGCAGCAACTTA
Found at i:36310464 original size:42 final size:42
Alignment explanation
Indices: 36310398--36310557 Score: 211
Period size: 42 Copynumber: 3.9 Consensus size: 42
36310388 GCTTTTGTAT
* * *
36310398 AAAAGCGCCGCTAAGGATCATGTTCTTTAGCGGCGCTTA-ATA
1 AAAATCGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
*
36310440 AAAATCGCCACTAAAGAACATGTTCTTTAGCGGCGCTTAGAAA
1 AAAATCGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
*
36310483 AAAAT-GCCGCTAAAGAACATG-TCTTTAGAGGCGCTTAGAA
1 AAAATCGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
36310523 AAAA-CGCCGCTAAAGATCATGTTCTTTCGCGGCGC
1 AAAATCGCCGCTAAAGAACATGTTCTTTAGCGGCGC
36310558 CAAAAGAACA
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
40 21 0.20
41 27 0.26
42 50 0.48
43 6 0.06
44 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAATCGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:36310547 original size:82 final size:84
Alignment explanation
Indices: 36310404--36310557 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 84
36310394 GTATAAAAGC
* * *
36310404 GCCGCTAAGGATCATGTTCTTTAGCGGCGCTTAATAAAAATCGCCACTAAAGAACATGTTCTTTA
1 GCCGCTAAAGAACATGTTCTTTAGAGGCGCTTAATAAAAATCGCCACTAAAGAACATGTTCTTTA
36310469 GCGGCGCTTAGAAAAAAAT
66 GCGGCGCTTAGAAAAAAAT
* *
36310488 GCCGCTAAAGAACATG-TCTTTAGAGGCGCTTAGA-AAAAA-CGCCGCTAAAGATCATGTTCTTT
1 GCCGCTAAAGAACATGTTCTTTAGAGGCGCTTA-ATAAAAATCGCCACTAAAGAACATGTTCTTT
*
36310550 CGCGGCGC
65 AGCGGCGC
36310558 CAAAAGAACA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
82 28 0.44
83 20 0.32
84 15 0.24
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
GCCGCTAAAGAACATGTTCTTTAGAGGCGCTTAATAAAAATCGCCACTAAAGAACATGTTCTTTA
GCGGCGCTTAGAAAAAAAT
Found at i:36313277 original size:20 final size:20
Alignment explanation
Indices: 36313237--36313307 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
36313227 TAATTCAAAA
*
36313237 TATTATAAAAA-ATTATAAAT
1 TATTATAAAAATATGAT-AAT
36313257 TATTATAAAAATATGATAAT
1 TATTATAAAAATATGATAAT
* *
36313277 TATAATAATAAT-TGATAAT
1 TATTATAAAAATATGATAAT
*
36313296 TAGTA-AAAAATA
1 TATTATAAAAATA
36313308 CTAACAAACT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 5 0.12
19 10 0.23
20 24 0.56
21 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
TATTATAAAAATATGATAAT
Found at i:36313278 original size:17 final size:19
Alignment explanation
Indices: 36313258--36313304 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
36313248 ATTATAAATT
36313258 ATTATAAAAAT-A-TGATA
1 ATTATAAAAATAATTGATA
*
36313275 ATTATAATAATAATTGATA
1 ATTATAAAAATAATTGATA
36313294 ATTAGTAAAAA
1 ATTA-TAAAAA
36313305 ATACTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 10 0.40
18 1 0.04
19 9 0.36
20 5 0.20
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (19 bp):
ATTATAAAAATAATTGATA
Found at i:36321042 original size:9 final size:9
Alignment explanation
Indices: 36321026--36321077 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
36321016 GGTATTTTTC
36321026 GGTAATTCG
1 GGTAATTCG
*
36321035 GTTAATTCG
1 GGTAATTCG
*
36321044 GTTAATTCG
1 GGTAATTCG
36321053 GGTAATTCG
1 GGTAATTCG
36321062 GGTAATTCG
1 GGTAATTCG
36321071 GGTAATT
1 GGTAATT
36321078 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:36321255 original size:12 final size:12
Alignment explanation
Indices: 36321238--36321262 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36321228 AGTAATTTCG
36321238 GGTCGGTTAACC
1 GGTCGGTTAACC
36321250 GGTCGGTTAACC
1 GGTCGGTTAACC
36321262 G
1 G
36321263 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:36324963 original size:24 final size:23
Alignment explanation
Indices: 36324914--36324965 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 23
36324904 TCTTTTAAAA
36324914 AATTATTAAATAATATATTTTAT
1 AATTATTAAATAATATATTTTAT
36324937 AATT-TTAAA-AAGTATATATTTACT
1 AATTATTAAATAA-TATAT-TTTA-T
36324961 AATTA
1 AATTA
36324966 AATGAGGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 2 0.08
22 10 0.40
23 8 0.32
24 5 0.20
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
AATTATTAAATAATATATTTTAT
Found at i:36333016 original size:30 final size:30
Alignment explanation
Indices: 36332980--36333041 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
36332970 AAAAAACAAA
36332980 ACCAATATATAAAAATCTACTATTAATCCT
1 ACCAATATATAAAAATCTACTATTAATCCT
36333010 ACCAATATATAAAAATCTACTATTAATCCT
1 ACCAATATATAAAAATCTACTATTAATCCT
36333040 AC
1 AC
36333042 TCCTAAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (30 bp):
ACCAATATATAAAAATCTACTATTAATCCT
Done.