Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 113 of 222
Found at i:36333866 original size:43 final size:43
Alignment explanation
Indices: 36333796--36333883 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
36333786 TTAAGAACAT
36333796 GGCTGTGTGGCCAGACCGTGTAAAATTTGAAAAGAGGGTCACAC
1 GGCTGTGTGGCCAGACCGTGTAAAATTTG-AAAGAGGGTCACAC
* * ** * *
36333840 GGCTGTGTTG-CAGACTGTGTGTAATTTGAAATAGGGTCATAC
1 GGCTGTGTGGCCAGACCGTGTAAAATTTGAAAGAGGGTCACAC
36333882 GG
1 GG
36333884 TCATGTCTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 14 0.37
43 15 0.39
44 9 0.24
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (43 bp):
GGCTGTGTGGCCAGACCGTGTAAAATTTGAAAGAGGGTCACAC
Found at i:36351380 original size:30 final size:30
Alignment explanation
Indices: 36351346--36351408 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
36351336 TAGTATTAAG
36351346 ATAATTTCAAGCCATATAAGTAATATATGA
1 ATAATTTCAAGCCATATAAGTAATATATGA
* *
36351376 ATAATTTGAAGTCATATAAGTAATATATGA
1 ATAATTTCAAGCCATATAAGTAATATATGA
36351406 ATA
1 ATA
36351409 TACTTGAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (30 bp):
ATAATTTCAAGCCATATAAGTAATATATGA
Found at i:36352255 original size:14 final size:14
Alignment explanation
Indices: 36352208--36352255 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
36352198 AGGAATCTTT
36352208 ATTATATTAACTTA
1 ATTATATTAACTTA
*
36352222 ATTAAATTAATCTTA
1 ATTATATTAA-CTTA
36352237 ATTATATTAACTTA
1 ATTATATTAACTTA
36352251 ATTAT
1 ATTAT
36352256 TCATTAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATATTAACTTA
Found at i:36354200 original size:20 final size:21
Alignment explanation
Indices: 36354176--36354246 Score: 76
Period size: 20 Copynumber: 3.4 Consensus size: 21
36354166 ACATTAAATT
*
36354176 TAATATTAAATTTATTAAA-T
1 TAATATTAAATTTATTAAAGA
*
36354196 TAATA-GAATATTTATCTACAAGA
1 TAATATTAA-ATTTAT-TA-AAGA
36354219 TAATATTAAATTTATTAAA-A
1 TAATATTAAATTTATTAAAGA
36354239 TAATATTA
1 TAATATTA
36354247 TTTTTGGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
19 2 0.05
20 20 0.47
21 4 0.09
22 4 0.09
23 11 0.26
24 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (21 bp):
TAATATTAAATTTATTAAAGA
Found at i:36354690 original size:9 final size:9
Alignment explanation
Indices: 36354676--36354700 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
36354666 TCATATTTAT
36354676 TTTAATTAA
1 TTTAATTAA
36354685 TTTAATTAA
1 TTTAATTAA
36354694 TTTAATT
1 TTTAATT
36354701 TTTCTTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTAA
Found at i:36360573 original size:22 final size:22
Alignment explanation
Indices: 36360536--36360600 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
36360526 TGCGAGTAGT
*
36360536 CAGAATGGCTAAAAGCCATAAA
1 CAGAATAGCTAAAAGCCATAAA
* *
36360558 CATG-ATAGCTATAAGCTATAAA
1 CA-GAATAGCTAAAAGCCATAAA
* *
36360580 CAGAATGGCTACAAGCCATAA
1 CAGAATAGCTAAAAGCCATAA
36360601 GTATAGTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.18
Consensus pattern (22 bp):
CAGAATAGCTAAAAGCCATAAA
Found at i:36360660 original size:32 final size:32
Alignment explanation
Indices: 36360606--36360823 Score: 298
Period size: 32 Copynumber: 6.9 Consensus size: 32
36360596 CATAAGTATA
* * * *
36360606 GTAATATAATTGGCAC--AGCCATCAGTAGCA
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
* * * *
36360636 GTGATATGATCGGCATACATCCATCAGTAACG
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
*
36360668 GTAATATGATCGGTACAAAGCCATCAGTAACG
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
* *
36360700 GTAATATGATCGACACAAAGCCATCAGTAACA
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
*
36360732 GTAAT-TGATCGGCACAAATCCATCAGTAACG
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
36360763 GTAATATGATCGGCACAAAGCCATCAGTAACG
1 GTAATATGATCGGCACAAAGCCATCAGTAACG
*
36360795 GTAATATGATCGACACAAAGCCATCAGTA
1 GTAATATGATCGGCACAAAGCCATCAGTA
36360824 GCATCGCAGC
Statistics
Matches: 165, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
30 12 0.07
31 28 0.17
32 125 0.76
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (32 bp):
GTAATATGATCGGCACAAAGCCATCAGTAACG
Found at i:36360753 original size:95 final size:96
Alignment explanation
Indices: 36360622--36360823 Score: 352
Period size: 95 Copynumber: 2.1 Consensus size: 96
36360612 TAATTGGCAC
* * * * *
36360622 AGCCATCAGTAGCAGTGATATGATCGGCATACATCCATCAGTAACGGTAATATGATCGGTACAAA
1 AGCCATCAGTAACAGTAATATGATCGGCACAAATCCATCAGTAACGGTAATATGATCGGCACAAA
36360687 GCCATCAGTAACGGTAATATGATCGACACAA
66 GCCATCAGTAACGGTAATATGATCGACACAA
36360718 AGCCATCAGTAACAGTAAT-TGATCGGCACAAATCCATCAGTAACGGTAATATGATCGGCACAAA
1 AGCCATCAGTAACAGTAATATGATCGGCACAAATCCATCAGTAACGGTAATATGATCGGCACAAA
36360782 GCCATCAGTAACGGTAATATGATCGACACAA
66 GCCATCAGTAACGGTAATATGATCGACACAA
36360813 AGCCATCAGTA
1 AGCCATCAGTA
36360824 GCATCGCAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
95 84 0.83
96 17 0.17
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (96 bp):
AGCCATCAGTAACAGTAATATGATCGGCACAAATCCATCAGTAACGGTAATATGATCGGCACAAA
GCCATCAGTAACGGTAATATGATCGACACAA
Found at i:36360898 original size:27 final size:27
Alignment explanation
Indices: 36360867--36360926 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
36360857 AACAAAGCTG
*
36360867 CCAGTAATAGT-ATATGTGGCCAG-GCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
*
36360894 CCAGTAACAGTGATTGTGGTAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
36360921 CCAGTA
1 CCAGTA
36360927 CAATACTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:36361026 original size:24 final size:23
Alignment explanation
Indices: 36360999--36361076 Score: 84
Period size: 24 Copynumber: 3.3 Consensus size: 23
36360989 GCTCAGAATT
*
36360999 AATCATTCAAATCACAGACAAATA
1 AATCATTCAAA-CACAGACAAATC
* *
36361023 AATCATACCAAACATAGACAAATC
1 AATCAT-TCAAACACAGACAAATC
* * *
36361047 AGTCATTTAACCACAGACAAATC
1 AATCATTCAAACACAGACAAATC
36361070 AATCATT
1 AATCATT
36361077 TGACCTTAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
23 19 0.43
24 21 0.48
25 4 0.09
ACGTcount: A:0.50, C:0.23, G:0.05, T:0.22
Consensus pattern (23 bp):
AATCATTCAAACACAGACAAATC
Found at i:36361115 original size:27 final size:27
Alignment explanation
Indices: 36361065--36361116 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
36361055 AACCACAGAC
*
36361065 AAATCAATCATTTGACCTTAAGGGTCA
1 AAATCAATCATTTGACCCTAAGGGTCA
*
36361092 AAAT-AATCATTTTACCCTACAGGGT
1 AAATCAATCATTTGACCCTA-AGGGT
36361117 ATTACGGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (27 bp):
AAATCAATCATTTGACCCTAAGGGTCA
Found at i:36361151 original size:27 final size:27
Alignment explanation
Indices: 36361098--36361483 Score: 470
Period size: 27 Copynumber: 14.3 Consensus size: 27
36361088 GTCAAAATAA
36361098 TCATTTTACCCTACA-GGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
36361124 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
36361151 TCATTCTACCCTATAGGGTTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
36361178 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
36361205 TCATTTTACCTTACAAGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
*
36361232 TCATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * **
36361259 TCATTTTACCTTACAGAGGTATTATAG
1 TCATTTTACCCTACAGGGGTATTACGG
*
36361286 TCATTTTACTCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
36361313 TCATTTTAACCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * *
36361340 TTATTTTACCCTACAAGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *** *
36361367 TCATTTTACCCTAGACATGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
36361394 TCATTTTACCCTATAGGGGTATTAAC-G
1 TCATTTTACCCTACAGGGGTATT-ACGG
* *
36361421 TCATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
36361448 TCATTTAACCCTACAGGAGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
36361475 TCATTTTAC
1 TCATTTTAC
36361484 AACCTTTTCG
Statistics
Matches: 305, Mismatches: 52, Indels: 5
0.84 0.14 0.01
Matches are distributed among these distances:
26 16 0.05
27 287 0.94
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:36369624 original size:79 final size:82
Alignment explanation
Indices: 36369513--36369697 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 82
36369503 GCTACTCGTT
* * *
36369513 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
36369577 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * **
36369593 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGGTCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* **
36369656 GATATGGTCGCTTAGCA
66 GATATAGTAACTTAGCA
36369673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36369698 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 56 0.62
80 34 0.38
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTTAGCA
Found at i:36369697 original size:40 final size:40
Alignment explanation
Indices: 36369494--36369697 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
36369484 CGGAATTTAA
** *
36369494 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36369534 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36369574 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36369613 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGTCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** *
36369653 CCGGATATGGTCGCTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36369693 CCGGA
1 CCGGA
36369698 CATCATTCAA
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 36 0.26
40 95 0.68
41 9 0.06
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36377707 original size:39 final size:40
Alignment explanation
Indices: 36377590--36377774 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
36377580 GCTACTCGTT
*
36377590 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
36377630 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36377670 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * ** *
36377709 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
36377750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36377775 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36387377 original size:26 final size:24
Alignment explanation
Indices: 36387347--36387439 Score: 82
Period size: 26 Copynumber: 3.8 Consensus size: 24
36387337 GGACTCACCA
*
36387347 CAGCTCGTATGAGTTTACCGATATAT
1 CAGCTCGTATGAGCTTACCGAT-T-T
*
36387373 CAGCTCTTATGAGCTTACC-ATTT
1 CAGCTCGTATGAGCTTACCGATTT
*
36387396 CAGCTCG-ATAGAGCTTACCGTTCTT
1 CAGCTCGTAT-GAGCTTACCGAT-TT
* *
36387421 TAGCTCGGAATGAGCTTAC
1 CAGCTC-GTATGAGCTTAC
36387440 TGATCATGGC
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
22 2 0.04
23 16 0.28
24 2 0.04
25 9 0.16
26 26 0.46
27 2 0.04
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACCGATTT
Found at i:36390807 original size:40 final size:40
Alignment explanation
Indices: 36390745--36390850 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
36390735 ACCAAAATGT
* * *
36390745 AAACAGGGGCACGTAAGAGCAATCAAGGGTACCGAAGTAC
1 AAACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
* * * *
36390785 GAATAAGGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
1 AAACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
*
36390825 AAACAGGGGCACGTATGTGCAATCAA
1 AAACAAGGGCACGTATGTGCAATCAA
36390851 TGTATAATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.15
Consensus pattern (40 bp):
AAACAAGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC
Found at i:36399565 original size:22 final size:21
Alignment explanation
Indices: 36399540--36399583 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
36399530 TGATAAACTT
36399540 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
36399562 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
36399583 T
1 T
36399584 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:36410256 original size:14 final size:14
Alignment explanation
Indices: 36410237--36410263 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36410227 GTGGTCCAGT
36410237 TGAACTGAACCGAG
1 TGAACTGAACCGAG
36410251 TGAACTGAACCGA
1 TGAACTGAACCGA
36410264 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:36415064 original size:25 final size:25
Alignment explanation
Indices: 36415036--36415084 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
36415026 ACGAATTTTC
36415036 TCAAAA-TTTATCGGGGGTAAAATTA
1 TCAAAATTTTAT-GGGGGTAAAATTA
*
36415061 TCAAAATTTTATTGGGGTAAAATT
1 TCAAAATTTTATGGGGGTAAAATT
36415085 GGGATGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTATGGGGGTAAAATTA
Found at i:36418008 original size:47 final size:47
Alignment explanation
Indices: 36417942--36418323 Score: 620
Period size: 47 Copynumber: 8.1 Consensus size: 47
36417932 GAAATGATAG
*
36417942 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36417989 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
36418038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36418085 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36418132 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36418179 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36418226 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
36418273 CGGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36418320 TAAG
1 TAAG
36418324 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 265 0.85
49 47 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36418500 original size:37 final size:37
Alignment explanation
Indices: 36418442--36418520 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
36418432 CCGAGCTCTA
* * *
36418442 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAG-ATTATGTCCGGGT
*
36418479 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
36418516 AAGAC
1 AAGAC
36418521 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:36420420 original size:43 final size:43
Alignment explanation
Indices: 36420372--36420474 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
36420362 TTGGTTTTCA
36420372 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
*
36420415 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
36420458 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
36420475 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
Found at i:36420491 original size:29 final size:29
Alignment explanation
Indices: 36420456--36420529 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36420446 GTTGTGAGAT
* *
36420456 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36420485 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36420514 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36420530 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36421020 original size:39 final size:40
Alignment explanation
Indices: 36420841--36421035 Score: 166
Period size: 40 Copynumber: 4.9 Consensus size: 40
36420831 TCGAATGATG
* * *
36420841 TCCGGGCTAAGTCCCGAAG-GCGTT-GTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
36420881 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
36420921 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
36420961 TCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
36421001 TCC-TGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
36421036 CGTGTATTCG
Statistics
Matches: 127, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 26 0.20
40 84 0.66
41 17 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:36421240 original size:25 final size:25
Alignment explanation
Indices: 36421199--36421249 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
36421189 GTGTATTAAC
36421199 GAATGAATAAGAGCACTATGTATGT
1 GAATGAATAAGAGCACTATGTATGT
* * *
36421224 GAAT-AATTAGAGACACTGTGTGTGT
1 GAATGAATAAGAG-CACTATGTATGT
36421249 G
1 G
36421250 CGAATTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTATGT
Found at i:36424789 original size:47 final size:47
Alignment explanation
Indices: 36424723--36425104 Score: 620
Period size: 47 Copynumber: 8.1 Consensus size: 47
36424713 GAAATGATAG
*
36424723 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36424770 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
36424819 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36424866 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36424913 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
36424960 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36425007 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
36425054 CGGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
36425101 TAAG
1 TAAG
36425105 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 265 0.85
49 47 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:36425279 original size:37 final size:37
Alignment explanation
Indices: 36425223--36425301 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36425213 CCGAGCTCTA
* *
36425223 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36425260 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36425297 AAGAC
1 AAGAC
36425302 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36442121 original size:12 final size:12
Alignment explanation
Indices: 36442104--36442128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36442094 AGATTAGAAC
36442104 TCATAGCACTTT
1 TCATAGCACTTT
36442116 TCATAGCACTTT
1 TCATAGCACTTT
36442128 T
1 T
36442129 TGGAGAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (12 bp):
TCATAGCACTTT
Found at i:36447110 original size:76 final size:76
Alignment explanation
Indices: 36446975--36447124 Score: 192
Period size: 76 Copynumber: 2.0 Consensus size: 76
36446965 TGGCATTCTA
** * * * * *
36446975 GTACATCATCAGATAAATCGAAAGAAATATATTGGCACACATTGTGCATCGTTAGACAAGCCGAA
1 GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
*
36447040 GCAATTATAGT
66 ACAATTATAGT
* * * *
36447051 GTACATCATCGGATAAATCGAAATAAATATACCGGCACATACTGTGTATCATCAAACAAGCCAAA
1 GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
36447116 ACAATTATA
66 ACAATTATA
36447125 TTAACACGCG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (76 bp):
GTACATCATCAGATAAATCGAAAGAAATATACCGGCACACACTGTGCATCATCAAACAAGCCAAA
ACAATTATAGT
Found at i:36447736 original size:37 final size:37
Alignment explanation
Indices: 36447695--36447767 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
36447685 AATTGGATAC
36447695 CATTCCCTCAAAAAAGAATAATATAATAAGTTACGGT
1 CATTCCCTCAAAAAAGAATAATATAATAAGTTACGGT
36447732 CATTCCCTCAAAAAAGAATAATATAATAAGTTACGG
1 CATTCCCTCAAAAAAGAATAATATAATAAGTTACGG
36447768 GATTTGGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (37 bp):
CATTCCCTCAAAAAAGAATAATATAATAAGTTACGGT
Found at i:36456294 original size:16 final size:16
Alignment explanation
Indices: 36456263--36456295 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36456253 AAATATTATA
*
36456263 TATTTTTTATACTTTT
1 TATTTTTTAAACTTTT
36456279 TATTTTTTAAA-TTTT
1 TATTTTTTAAACTTTT
36456294 TA
1 TA
36456296 AACAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTTTTTAAACTTTT
Found at i:36467740 original size:41 final size:41
Alignment explanation
Indices: 36467693--36468007 Score: 450
Period size: 41 Copynumber: 7.7 Consensus size: 41
36467683 GGTTTTAAAA
* * *
36467693 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTACAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
36467734 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
36467775 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
36467816 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
36467857 TCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
36467898 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
36467939 CCTAGCAGGCTAAGTGCTGGTGATTTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
36467980 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
36468008 TTTATATTAA
Statistics
Matches: 242, Mismatches: 31, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
41 238 0.98
42 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:36467830 original size:82 final size:82
Alignment explanation
Indices: 36467693--36468003 Score: 496
Period size: 82 Copynumber: 3.8 Consensus size: 82
36467683 GGTTTTAAAA
* * *
36467693 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTACAAGCCTAGCAGGCTAAGTGCCGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
* *
36467758 CTGAATCAGGCTATAAG
66 CTGGATTAGGCTATAAG
*
36467775 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
36467840 CTGGATTAGGCTATAAG
66 CTGGATTAGGCTATAAG
* *
36467857 TCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
36467922 CTGGATTAGGCTATAAG
66 CTGGATTAGGCTATAAG
* * * * * *
36467939 CCTAGCAGGCTAAGTGCTGGTGATTTGAATCAGGCTTTAAGCCTAACAAGCTAAGTGCCAGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
36468004 TCTGTTTATA
Statistics
Matches: 214, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 214 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (82 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAA
CTGGATTAGGCTATAAG
Found at i:36469974 original size:12 final size:12
Alignment explanation
Indices: 36469957--36469982 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36469947 CATTCCGAAG
36469957 TATATATATACA
1 TATATATATACA
36469969 TATATATATACA
1 TATATATATACA
36469981 TA
1 TA
36469983 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:36470494 original size:28 final size:28
Alignment explanation
Indices: 36470454--36470607 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
36470444 TAAATTGTAC
36470454 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
36470482 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
36470510 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36470538 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36470566 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36470593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36470608 GACTTAATAT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.19
28 100 0.81
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:36470520 original size:56 final size:56
Alignment explanation
Indices: 36470429--36470607 Score: 279
Period size: 56 Copynumber: 3.2 Consensus size: 56
36470419 GAGATTGGCG
* * * *
36470429 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
36470486 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
36470542 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
36470597 CTGAGTGTGCG
1 CTAAGTGTGCG
36470608 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 23 0.20
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:36473370 original size:101 final size:101
Alignment explanation
Indices: 36473250--36473434 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 101
36473240 AAAGTGATGG
* * * *
36473250 TCACGTGTGTAGTACTATGTGCAGTCTACTACGTGTACCGGAAT-G-ATGGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGCACCGG-ATGGAAT-GGTCACATGTGTAGT
36473313 ACTATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
64 ACTATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
*
36473351 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGCATCGGATGGAAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGCACCGGATGG-AATGGTCACATGTGTAGTA
*
36473416 CTATGTGTAGGCTACTATG
65 CTATGTGCAGGCTACTATG
36473435 TGAACCGGGT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 2 0.03
101 38 0.51
102 33 0.44
103 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTACAGGCTACTACGTGCACCGGATGGAATGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTATCGAATAGCTTCAA
Found at i:36473411 original size:51 final size:49
Alignment explanation
Indices: 36473244--36473432 Score: 175
Period size: 51 Copynumber: 3.8 Consensus size: 49
36473234 AAAGTGAAAG
* * *
36473244 TGAT-GGTCACGTGTGTAGTACTATGTGCAGTCTACTACGTGTACCGGAA
1 TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-A
* * * * *
36473293 TGATGGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGAA
1 TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGA
* ** * * *
36473342 TAGCTTCAATCACGTGTGTAGTACTATGTACAGGCTACTACGTGCATCGGA
1 T-G-ATCGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGA
*
36473393 TGGAAAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 T-G--ATCGGTCACATGTGTAGTACTATGTGCAGGCTACTA
36473433 TGTGAACCGG
Statistics
Matches: 110, Mismatches: 26, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
49 6 0.05
50 37 0.34
51 66 0.60
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGA
Found at i:36473512 original size:44 final size:45
Alignment explanation
Indices: 36473438--36473529 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 45
36473428 TACTATGTGA
*
36473438 ACCGGGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
1 ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
* * * *
36473483 ACCGAGTATCATTGATTAT-AAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
36473527 ACC
1 ACC
36473530 ATGTATTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 26 0.62
45 16 0.38
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGAGTACCATTGACTATAAAGGTGGTTGCAATATGCTGATTCC
Found at i:36475634 original size:8 final size:8
Alignment explanation
Indices: 36475621--36475649 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
36475611 TTTTAAATGA
36475621 TATTTTAT
1 TATTTTAT
36475629 TATTTTAT
1 TATTTTAT
36475637 TATTTTAT
1 TATTTTAT
36475645 TATTT
1 TATTT
36475650 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:36482027 original size:91 final size:90
Alignment explanation
Indices: 36481850--36482027 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 90
36481840 GTGGCAGGTG
* * * *
36481850 AATACACTGTCAGTAGTTGTGAATACACAATGGGTTTGTAGATAAAAGCTACTAGTAAAAGTTGT
1 AATACACTGTCAATAGTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGT-AAAGTTGT
* *
36481915 GGGTAAACCACCAGTGCTTGCAAGTT
65 GGATAAACCACCACTGCTTGCAAGTT
* * *
36481941 AATACATTGTCAATAGGTTGTGAATGCATAATGGCTTTGCAGATAAAAACTACTAGT-AAGTTTG
1 AATACACTGTCAATA-GTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGTAAAG-TTG
*
36482005 TGGATAAACCACCACTGTTTGCA
64 TGGATAAACCACCACTGCTTGCA
36482028 GATAATTTGC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
90 3 0.04
91 36 0.48
92 36 0.48
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (90 bp):
AATACACTGTCAATAGTTGTGAATACACAATGGCTTTGCAGATAAAAACTACTAGTAAAGTTGTG
GATAAACCACCACTGCTTGCAAGTT
Found at i:36484428 original size:22 final size:22
Alignment explanation
Indices: 36484400--36484459 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
36484390 ATTAGCACGG
36484400 TAGTGCTTTCTGTTTAACACAT
1 TAGTGCTTTCTGTTTAACACAT
* * *
36484422 TAGTGCTATCTGATTAGCACAT
1 TAGTGCTTTCTGTTTAACACAT
36484444 TAGTGCTCTT-TGTTTA
1 TAGTGCT-TTCTGTTTA
36484460 GCACCTAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.45
Consensus pattern (22 bp):
TAGTGCTTTCTGTTTAACACAT
Found at i:36484460 original size:22 final size:21
Alignment explanation
Indices: 36484391--36484463 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 21
36484381 CTCTGATTCA
**
36484391 TTAGCACGGTAGTGCTTTCTGT
1 TTAGCACATTAGTGCTTT-TGT
* * *
36484413 TTAACACATTAGTGCTATCTGA
1 TTAGCACATTAGTGCT-TTTGT
36484435 TTAGCACATTAGTGCTCTTTGT
1 TTAGCACATTAGTGCT-TTTGT
36484457 TTAGCAC
1 TTAGCAC
36484464 CTAGGTGCTC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
22 40 0.98
23 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (21 bp):
TTAGCACATTAGTGCTTTTGT
Found at i:36484472 original size:44 final size:44
Alignment explanation
Indices: 36484390--36484477 Score: 99
Period size: 44 Copynumber: 2.0 Consensus size: 44
36484380 TCTCTGATTC
* *
36484390 ATTAGCACGGTAGTGCTTTCTGTTTAACACATTAGTGCTATCTG
1 ATTAGCACAGTAGTGCTTTCTGTTTAACACACTAGTGCTATCTG
* * *
36484434 ATTAGCACATTAGTGCTCTT-TGTTTAGCAC-CTAGGTGCTCTCTG
1 ATTAGCACAGTAGTGCT-TTCTGTTTAACACACTA-GTGCTATCTG
36484478 TTCTGTTATA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
43 2 0.05
44 33 0.89
45 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (44 bp):
ATTAGCACAGTAGTGCTTTCTGTTTAACACACTAGTGCTATCTG
Found at i:36484785 original size:17 final size:17
Alignment explanation
Indices: 36484755--36484790 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
36484745 ATAATTTTGG
*
36484755 TAAATGAAATAAATGAA
1 TAAATGAAAGAAATGAA
*
36484772 TAAATTAAAGAAATGAA
1 TAAATGAAAGAAATGAA
36484789 TA
1 TA
36484791 CATTTTGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (17 bp):
TAAATGAAAGAAATGAA
Found at i:36487134 original size:43 final size:43
Alignment explanation
Indices: 36487073--36487163 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
36487063 AGGGGGACTT
36487073 GCATGTCAAATTCCCCCCTACTAGTAGTGGCCGGCCATGACAA
1 GCATGTCAAATTCCCCCCTACTAGTAGTGGCCGGCCATGACAA
36487116 GCATGTCAAATTCCCCCCTACTAGTAGTGGCCGGCCATGACAA
1 GCATGTCAAATTCCCCCCTACTAGTAGTGGCCGGCCATGACAA
36487159 GCATG
1 GCATG
36487164 GTAGACCAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (43 bp):
GCATGTCAAATTCCCCCCTACTAGTAGTGGCCGGCCATGACAA
Found at i:36488583 original size:40 final size:39
Alignment explanation
Indices: 36488494--36488717 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 39
36488484 TTGAATGCTG
*
36488494 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
36488533 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
36488573 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* *
36488612 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGATACTAAA
*
36488652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTA-AA
*
36488693 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
36488718 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 54 0.33
40 96 0.59
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:36488630 original size:79 final size:79
Alignment explanation
Indices: 36488494--36488717 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 79
36488484 TTGAATGCTG
* * *
36488494 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCGAAGGCAT
*
36488556 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
*
36488573 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTC-CGAAGGCATTT
*
36488637 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
36488652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
36488716 TG
64 TG
36488718 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 13
0.85 0.07 0.09
Matches are distributed among these distances:
78 11 0.09
79 60 0.47
80 54 0.42
81 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:36488735 original size:80 final size:80
Alignment explanation
Indices: 36488494--36488750 Score: 235
Period size: 79 Copynumber: 3.2 Consensus size: 80
36488484 TTGAATGCTG
* * * *
36488494 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
** *
36488555 TTTGTGCGAGAT-ACTAAT
63 TTTGAACGAG-TGACTAAA
* * * *
36488573 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
36488637 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
*
36488652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
36488716 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
36488732 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36488751 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
78 11 0.07
79 72 0.47
80 67 0.44
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:36496549 original size:79 final size:81
Alignment explanation
Indices: 36496413--36496597 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
36496403 TTGAATGATG
*
36496413 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36496477 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36496492 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36496554 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36496572 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36496598 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36496611 original size:40 final size:40
Alignment explanation
Indices: 36496414--36496597 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
36496404 TGAATGATGT
* * * *
36496414 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36496454 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36496494 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36496532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36496573 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36496598 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36496619 original size:79 final size:79
Alignment explanation
Indices: 36496414--36496630 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
36496404 TGAATGATGT
** * * * **
36496414 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
36496477 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
36496494 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
36496559 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
36496573 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
36496631 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:36512472 original size:37 final size:37
Alignment explanation
Indices: 36512422--36512500 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36512412 TTATTACGAA
* * *
36512422 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36512459 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36512496 GTCTT
1 GTCTT
36512501 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36512721 original size:47 final size:47
Alignment explanation
Indices: 36512619--36513263 Score: 869
Period size: 47 Copynumber: 13.4 Consensus size: 47
36512609 CCTTTCGGGA
* * * * * * * * *
36512619 CTTATCACATTTATGCACTTTCAGATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36512666 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36512713 CTTATCACACATATACACTTTCACATT-ATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36512759 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
36512810 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36512859 CTTATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36512906 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36512953 CTTATTACATATATACATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
36513004 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36513053 CTTATTACATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36513100 CTTATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36513147 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36513194 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
36513245 CTTATCACATATATACACT
1 CTTATCACATATATACACT
36513264 CTCTTGGCTG
Statistics
Matches: 542, Mismatches: 41, Indels: 30
0.88 0.07 0.05
Matches are distributed among these distances:
46 22 0.04
47 288 0.53
48 6 0.01
49 105 0.19
50 17 0.03
51 100 0.18
53 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36513005 original size:194 final size:193
Alignment explanation
Indices: 36512672--36513263 Score: 1012
Period size: 194 Copynumber: 3.1 Consensus size: 193
36512662 CGGCCCTGTC
*
36512672 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
1 ACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
*
36512737 ATT-ATCACATCGACTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGG
66 ATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-ACTTTCACATTCATCACATCGG
36512801 CCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
130 CCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
36512865 ACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
1 ACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
36512930 ATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAGACTTTCACATTCATCACATCGG
66 ATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-ACTTTCACATTCATCACATCGG
36512995 CCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
130 CCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
* * * *
36513059 ACATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTTCAC
1 ACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
* *
36513124 ATTCATCACATCGGCTATTAGGCCTTATCACACATATAC---ACTTTCACATTCATCACATCGGC
66 ATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAACTTTCACATTCATCACATCGGC
* * *
36513186 TATTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
131 CATTAGGCCTTA-T-CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
*
36513251 ACATATATACACT
1 ACATACATACACT
36513264 CTCTTGGCTG
Statistics
Matches: 383, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
190 34 0.09
191 1 0.00
192 60 0.16
193 67 0.17
194 221 0.58
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (193 bp):
ACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
ATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAACTTTCACATTCATCACATCGGC
CATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATT
Found at i:36513117 original size:241 final size:241
Alignment explanation
Indices: 36512670--36513257 Score: 1033
Period size: 241 Copynumber: 2.4 Consensus size: 241
36512660 CTCGGCCCTG
* * *
36512670 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC---ACT
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAACT
* * *
36512732 TTCACATT-ATCACATCGACTATTAGGCCTTATTACATATATACATACACTTTCACATTCATCAC
66 TTCACATTCATCACATCGGCCATTAGGCCTTA-T-CACATATACATACACTTTCACATTCATCAC
36512796 ATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCT
129 ATCGGCCATTAGGCCTTATCACA-ATACATACACTTTCACATTCATCACATCGGCCATTAGGCCT
36512861 TATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
193 TATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
36512910 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAGAC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-AC
36512975 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACA
*
36513040 TCGGCCATTAGGCCTTATTAC-ATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
130 TCGGCCATTAGGCCTTATCACAATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
36513104 TTACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
195 TTACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
36513151 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACAC
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATA-AC
36513216 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
36513258 TACACTCTCT
Statistics
Matches: 335, Mismatches: 8, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
240 56 0.17
241 196 0.59
243 50 0.15
244 12 0.04
245 21 0.06
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (241 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACAATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
TACATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:36521832 original size:18 final size:18
Alignment explanation
Indices: 36521788--36521835 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
36521778 CAATAAAAAA
36521788 AATATTTTGAAATTGAAT
1 AATATTTTGAAATTGAAT
36521806 AATGA-TTTGCAAA-TGAAT
1 AAT-ATTTTG-AAATTGAAT
36521824 AATATTTTGAAA
1 AATATTTTGAAA
36521836 ACGAACGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.15
18 19 0.70
19 4 0.15
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.40
Consensus pattern (18 bp):
AATATTTTGAAATTGAAT
Found at i:36533736 original size:40 final size:39
Alignment explanation
Indices: 36533704--36533779 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
36533694 GCATTCAGGA
* *
36533704 GTACTAAAGTACAAACAAAGTCACGTATGTGCAATCAGAG
1 GTACCAAAGTACAAA-AAAGGCACGTATGTGCAATCAGAG
* * *
36533744 GTACCGAATTACAAAAAAGGGACGTATGTGCAATCA
1 GTACCAAAGTACAAAAAAGGCACGTATGTGCAATCA
36533780 TTAATAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
39 19 0.61
40 12 0.39
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.20
Consensus pattern (39 bp):
GTACCAAAGTACAAAAAAGGCACGTATGTGCAATCAGAG
Found at i:36548610 original size:26 final size:26
Alignment explanation
Indices: 36548574--36548639 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
36548564 TCTGACCCAT
*
36548574 AGCTCGTGTGAGCAGACCCATTTTAC
1 AGCTCGTGTGAGCAGACCCATTTCAC
* *
36548600 AGCTCTTGTGAACAGACCCATTTCAC
1 AGCTCGTGTGAGCAGACCCATTTCAC
36548626 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
36548640 ACGATGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (26 bp):
AGCTCGTGTGAGCAGACCCATTTCAC
Found at i:36557395 original size:50 final size:49
Alignment explanation
Indices: 36557325--36557518 Score: 199
Period size: 51 Copynumber: 3.8 Consensus size: 49
36557315 ATGTGAAAGT
* *
36557325 GAAAGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
1 GAAAGT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * *
36557376 GAAAGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCG
1 GAAAG-TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * * * * *
36557426 GATAACTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCG
1 GA-AA-GTAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * *
36557477 GATAGTGATGGTCACATGTGCAGTACTATGTGTAGGCTACTA
1 GAAAGT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
36557519 TGTGAATCAG
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 40 0.34
51 75 0.64
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GAAAGTAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
Found at i:36557466 original size:51 final size:50
Alignment explanation
Indices: 36557336--36557468 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 50
36557326 AAAGTGATGG
* * *
36557336 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAAACATAGA
* * * * * *
36557386 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAACTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGA-AACATAGA
36557437 TCACGTGTGTAGTACTATGTGCAGGCTACTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTAC
36557469 ATGTATCGGA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 37 0.53
51 33 0.47
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAAACATAGA
Found at i:36557792 original size:37 final size:38
Alignment explanation
Indices: 36557723--36557795 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
36557713 ATGTGTGGAA
* * *
36557723 TTGAATTGAATATTGACTTGAAAATGACAAAGTGAATT
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
*
36557761 TTGAATTAAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAA
36557796 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32
Consensus pattern (38 bp):
TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:36562075 original size:93 final size:92
Alignment explanation
Indices: 36561900--36562067 Score: 246
Period size: 93 Copynumber: 1.8 Consensus size: 92
36561890 ATGCAGTTTG
* * *
36561900 CTCATAAGAGCAATTTCAACCGATAACACGCCAAATGCACATAGTGTAAAGCCCTTAGGCTAAAT
1 CTCATAAGAGCAATTTCAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAAT
* *
36561965 ATTGTCCCTCAAGAACACGTCAGATTC
66 ATTCTCCCCCAAGAACACGTCAGATTC
* * * *
36561992 CTCATAAGAGCTATTTCCAACTGATAACATGCCAGATACACATAGTGCAAAGCCCATAGGCTAAA
1 CTCATAAGAGCAATTT-CAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAA
36562057 TATTCTCCCCC
65 TATTCTCCCCC
36562068 TATAACACAC
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 15 0.23
93 51 0.77
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.23
Consensus pattern (92 bp):
CTCATAAGAGCAATTTCAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAAT
ATTCTCCCCCAAGAACACGTCAGATTC
Found at i:36562083 original size:93 final size:92
Alignment explanation
Indices: 36561900--36562091 Score: 242
Period size: 93 Copynumber: 2.1 Consensus size: 92
36561890 ATGCAGTTTG
* * *
36561900 CTCATAAGAGCAATTTCAACCGATAACACGCCAAATGCACATAGTGTAAAGCCCTTAGGCTAAAT
1 CTCATAAGAGCAATTTCAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAAT
* * *
36561965 ATTGTCCCTCAAGAACACGTCAGATTC
66 ATTCTCCCCCAAGAACACCTCAGATTC
* * * *
36561992 CTCATAAGAGCTATTTCCAACTGATAACATGCCAGATACACATAGTGCAAAGCCCATAGGCTAAA
1 CTCATAAGAGCAATTT-CAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAA
* * *
36562057 TATTCTCCCCCTATAACACACT-AGATTG
65 TATTCTCCCCCAAGAACAC-CTCAGATTC
36562085 CTCATAA
1 CTCATAA
36562092 AAGTTATTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
92 15 0.18
93 69 0.81
94 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.24
Consensus pattern (92 bp):
CTCATAAGAGCAATTTCAACCGATAACACGCCAAATACACATAGTGCAAAGCCCATAGGCTAAAT
ATTCTCCCCCAAGAACACCTCAGATTC
Found at i:36563175 original size:27 final size:27
Alignment explanation
Indices: 36563121--36563176 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
36563111 TACACCCAGT
* *
36563121 AAAATTTTGACGATTTTAATCCCGATA
1 AAAATTTTGACGATTTTAACCCCAATA
*
36563148 AAAATTTTGATGATTTT-ACCCCTAATA
1 AAAATTTTGACGATTTTAACCCC-AATA
36563175 AA
1 AA
36563177 GTTTTGAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (27 bp):
AAAATTTTGACGATTTTAACCCCAATA
Found at i:36569867 original size:64 final size:63
Alignment explanation
Indices: 36569766--36569892 Score: 218
Period size: 64 Copynumber: 2.0 Consensus size: 63
36569756 GCATAGCTCA
* *
36569766 ATCAAAAGATTGCACAATAAACAATAATTTTCGTGTCTAATAAAAATAAATAATACTCTTCAGG
1 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAA-AAAAATAAATAATACTCTTCAGG
*
36569830 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAGTACTCTTCAGG
1 ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAATACTCTTCAGG
36569893 TCTAAAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
63 22 0.37
64 38 0.63
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.28
Consensus pattern (63 bp):
ATCAAAAGATTGCACAATAAACAATAATCTTCATGTCTAAAAAAATAAATAATACTCTTCAGG
Found at i:36569877 original size:28 final size:28
Alignment explanation
Indices: 36569845--36569902 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
36569835 AAGATTGCAC
*
36569845 AATAAACAATAATCTTCATGTCTAAAAA
1 AATAAACAATAATCTTCAGGTCTAAAAA
* * *
36569873 AATAAATAGTACTCTTCAGGTCTAAAAA
1 AATAAACAATAATCTTCAGGTCTAAAAA
36569901 AA
1 AA
36569903 GAACTGGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (28 bp):
AATAAACAATAATCTTCAGGTCTAAAAA
Found at i:36574355 original size:20 final size:20
Alignment explanation
Indices: 36574319--36574357 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36574309 CAGAAATCTC
*
36574319 TCTTTTCTCTCTGTTCTTCT
1 TCTTTTCTCTCTCTTCTTCT
36574339 TCTTTTCTCTAC-CTTCTTC
1 TCTTTTCTCT-CTCTTCTTC
36574358 CTATCTCGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.03, C:0.33, G:0.03, T:0.62
Consensus pattern (20 bp):
TCTTTTCTCTCTCTTCTTCT
Found at i:36580508 original size:61 final size:61
Alignment explanation
Indices: 36580394--36580511 Score: 157
Period size: 61 Copynumber: 1.9 Consensus size: 61
36580384 TAAAAGAAAT
* * * * * *
36580394 AATAAATTTAGCTCTTAATATTTACAAAATTGATCATTTTATTTCTAATTCTAAAAAATTC
1 AATAAATTTAGCCCTTAATATTTACAAAACTGATCAATTCATTCCTAACTCTAAAAAATTC
*
36580455 AATAAATTTGGCCCTTAATATTTACAAAACCT-ATCAATTCATTCCTAACTCTAAAAA
1 AATAAATTTAGCCCTTAATATTTACAAAA-CTGATCAATTCATTCCTAACTCTAAAAA
36580512 TTAAAAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
61 48 0.98
62 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (61 bp):
AATAAATTTAGCCCTTAATATTTACAAAACTGATCAATTCATTCCTAACTCTAAAAAATTC
Found at i:36590184 original size:30 final size:30
Alignment explanation
Indices: 36590098--36590190 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 30
36590088 TAAAACACTC
* *
36590098 AACCCATCTC-ATAAAAATTATTTCTTT-AG
1 AACCCATC-CAATCAAAATTATTTTTTTCAG
*
36590127 AACCCATCCAATCAAAATTA-GTTTTTCAG
1 AACCCATCCAATCAAAATTATTTTTTTCAG
* * *
36590156 AACCTATCCTAT-ACAAATTATTTTTTTCAA
1 AACCCATCCAATCA-AAATTATTTTTTTCAG
36590186 AACCC
1 AACCC
36590191 CTAAAGATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 6 0.12
29 35 0.67
30 11 0.21
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
AACCCATCCAATCAAAATTATTTTTTTCAG
Found at i:36590237 original size:22 final size:23
Alignment explanation
Indices: 36590211--36590267 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
36590201 AATAAAACCC
*
36590211 TAAAATCCTAAACACTTAAA-AT
1 TAAAAACCTAAACACTTAAATAT
36590233 TAAAAACCTTAAA-ACTTAAATAT
1 TAAAAACC-TAAACACTTAAATAT
*
36590256 T-AAACCCTAAAC
1 TAAAAACCTAAAC
36590268 CTAAATCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAAAACCTAAACACTTAAATAT
Found at i:36590245 original size:15 final size:17
Alignment explanation
Indices: 36590220--36590252 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
36590210 CTAAAATCCT
36590220 AAACACTTAAAA-TTAA
1 AAACACTTAAAACTTAA
36590236 AAAC-CTTAAAACTTAA
1 AAACACTTAAAACTTAA
36590252 A
1 A
36590253 TATTAAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.24
Consensus pattern (17 bp):
AAACACTTAAAACTTAA
Found at i:36592456 original size:38 final size:38
Alignment explanation
Indices: 36592413--36592508 Score: 115
Period size: 38 Copynumber: 2.5 Consensus size: 38
36592403 GGATTGGTTG
* *
36592413 GAAATGGCTATCTACAGGCTCTTTA-AAGTGACACCATTA
1 GAAATGGTTATCTACAGGCTCTTCAGAA-TGACACCA-TA
* *
36592452 -AAATGGTTATATACAGGCTGTTCAGAATGACACCATA
1 GAAATGGTTATCTACAGGCTCTTCAGAATGACACCATA
*
36592489 GAAATGGTTATCTATAGGCT
1 GAAATGGTTATCTACAGGCT
36592509 TTTCGGAGCG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 2 0.04
38 45 0.92
39 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (38 bp):
GAAATGGTTATCTACAGGCTCTTCAGAATGACACCATA
Found at i:36592522 original size:38 final size:38
Alignment explanation
Indices: 36592442--36592529 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
36592432 TCTTTAAAGT
*
36592442 GACACCATTA-AAATGGTTATATACAGGCTGTTCAGAAT
1 GACACCA-TAGAAATGGTTATATACAGGCTGTTCAGAAC
* * * * *
36592480 GACACCATAGAAATGGTTATCTATAGGCTTTTCGGAGC
1 GACACCATAGAAATGGTTATATACAGGCTGTTCAGAAC
36592518 GACACCAT-GAAA
1 GACACCATAGAAA
36592530 ACAGTCTACA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
37 6 0.14
38 37 0.86
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (38 bp):
GACACCATAGAAATGGTTATATACAGGCTGTTCAGAAC
Found at i:36599724 original size:23 final size:23
Alignment explanation
Indices: 36599693--36599738 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
36599683 TTGATTTTAC
*
36599693 TTTTTTTTTATTTTACCACTGTA
1 TTTTATTTTATTTTACCACTGTA
36599716 TTTTATTTTATTTTACCACTGTA
1 TTTTATTTTATTTTACCACTGTA
36599739 GTTCTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.13, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTTTATTTTACCACTGTA
Found at i:36608534 original size:134 final size:136
Alignment explanation
Indices: 36608287--36608559 Score: 496
Period size: 134 Copynumber: 2.0 Consensus size: 136
36608277 AATAAAATGG
36608287 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGGTTAAAAAGTTTATCA
1 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGGTTAAAAAGTTTATCA
*
36608352 AATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCTAGTGATGTGATGTGCCATGTG
66 AATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTG
36608417 TATTTT
131 TATTTT
*
36608423 ATAAATTAGTTTATGTATGTTAGATTAAAGAGCAAATT-AATTTTTTT-GTTAAAAAGTTTATCA
1 ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGGTTAAAAAGTTTATCA
* *
36608486 AATTGTACTGTTAAAAATTGGTGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGTCATGTG
66 AATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTG
36608551 TATTTT
131 TATTTT
36608557 ATA
1 ATA
36608560 TTGATATATA
Statistics
Matches: 133, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
134 87 0.65
135 9 0.07
136 37 0.28
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (136 bp):
ATAAATTAGTTTATGTACGTTAGATTAAAGAGCAAATTAAATTTTTTTGGTTAAAAAGTTTATCA
AATTGTACTGTTAAAAATTGGCGTGATTGATGGTATAATCGGCCAGTGATGTGATGTGCCATGTG
TATTTT
Found at i:36609334 original size:31 final size:31
Alignment explanation
Indices: 36609299--36609365 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
36609289 AACAACCTAG
**
36609299 TGACTTAAATAAAAATATTTGAATAATTCAA
1 TGACTTAAATAAAAATATTCAAATAATTCAA
36609330 TGACTTAAATAAAAATATTCAAATAATTCAA
1 TGACTTAAATAAAAATATTCAAATAATTCAA
*
36609361 CGACT
1 TGACT
36609366 ATTTTGTAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.33
Consensus pattern (31 bp):
TGACTTAAATAAAAATATTCAAATAATTCAA
Found at i:36614056 original size:22 final size:22
Alignment explanation
Indices: 36614031--36614072 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
36614021 ATTAATTTTT
*
36614031 TTATTTTCCATCAATTATGTTG
1 TTATTTTCCAGCAATTATGTTG
36614053 TTATTTTCCAGCAATTATGT
1 TTATTTTCCAGCAATTATGT
36614073 ACTTATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.52
Consensus pattern (22 bp):
TTATTTTCCAGCAATTATGTTG
Found at i:36614078 original size:22 final size:22
Alignment explanation
Indices: 36614031--36614080 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
36614021 ATTAATTTTT
* **
36614031 TTATTTTCCATCAATTATGTTG
1 TTATTTTCCAGCAATTATGTAC
36614053 TTATTTTCCAGCAATTATGTAC
1 TTATTTTCCAGCAATTATGTAC
36614075 TTATTT
1 TTATTT
36614081 CATGAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54
Consensus pattern (22 bp):
TTATTTTCCAGCAATTATGTAC
Found at i:36618467 original size:14 final size:14
Alignment explanation
Indices: 36618448--36618475 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36618438 TAAAGTTATA
36618448 TTTAATAATTCATT
1 TTTAATAATTCATT
36618462 TTTAATAATTCATT
1 TTTAATAATTCATT
36618476 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:36618946 original size:19 final size:19
Alignment explanation
Indices: 36618924--36618961 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
36618914 TCAATCATCC
36618924 CTCATCTCATCA-TCTCTCA
1 CTCAT-TCATCATTCTCTCA
36618943 CTCATTCATCATTCTCTCA
1 CTCATTCATCATTCTCTCA
36618962 ACTCTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATTCATCATTCTCTCA
Found at i:36628401 original size:3 final size:3
Alignment explanation
Indices: 36628393--36628418 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36628383 CATGCTTAAA
36628393 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
36628419 AAAATACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:36648433 original size:24 final size:25
Alignment explanation
Indices: 36648395--36648442 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
36648385 ATTAGTCTAT
* *
36648395 CTATAGTAGTCTCAGTATA-ACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
36648419 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
36648443 TTAAAGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:36648791 original size:18 final size:19
Alignment explanation
Indices: 36648770--36648818 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
36648760 AATCATATCG
36648770 TTCATTTCAAAAAT-ATTA
1 TTCATTTCAAAAATCATTA
* *
36648788 TTCATTT-ACAAATCGTTA
1 TTCATTTCAAAAATCATTA
36648806 TTCAATTTCAAAA
1 TTC-ATTTCAAAA
36648819 TGTTTTCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 5 0.20
18 13 0.52
19 4 0.16
20 3 0.12
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (19 bp):
TTCATTTCAAAAATCATTA
Found at i:36660937 original size:27 final size:27
Alignment explanation
Indices: 36660906--36660958 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
36660896 TAAAAGCAGC
*
36660906 TAAAATAAAAGTTTTTCATTTAATTTT
1 TAAAATAAAAGTTTTTAATTTAATTTT
36660933 TAAAATAAAAGTTTTTAATTTAATTT
1 TAAAATAAAAGTTTTTAATTTAATTT
36660959 AATTTGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (27 bp):
TAAAATAAAAGTTTTTAATTTAATTTT
Found at i:36661821 original size:25 final size:26
Alignment explanation
Indices: 36661767--36661821 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
36661757 TTTCTCCGAA
* *
36661767 ATTTTAATTTTATTTAATTATTTGAT
1 ATTTTAATTTTATTAAATTATTTCAT
36661793 -TTTTCAA-TTTATTAAATTA-TTCAT
1 ATTTT-AATTTTATTAAATTATTTCAT
36661817 ATTTT
1 ATTTT
36661822 GTGCAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 4 0.16
25 19 0.76
26 2 0.08
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTTTAATTTTATTAAATTATTTCAT
Found at i:36670433 original size:75 final size:75
Alignment explanation
Indices: 36670305--36670623 Score: 372
Period size: 75 Copynumber: 4.3 Consensus size: 75
36670295 ATAATGAATA
* *
36670305 TTGTCGGTTTATCTGACTAGCGTTGGGCGTAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
36670370 ACCATTATAT
66 ACCATTATAT
* * * * *
36670380 TTGTTGGTTTATCTGATTAGCGCTGGGTGCAATTTTCTTCAGTTTATCTGACTAGTGCTAGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
36670445 ACCATTATAT
66 ACCATTATAT
* * * * * * *
36670455 TTGTTGGTTTATCCGACTAGCGTTAGGCGCAACTTTCATTAGTTTATCTGACTAATG-TTGCGCA
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAG-GCA
* *
36670519 CAACATTTTAT
65 CACCATTATAT
* * * ** * * *
36670530 CTGTCGGTTTATCCGACTAGCACTTAGCGCAACTTTCATCA-TTTATCTTACTAGTGTTGGGCAC
1 TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
*
36670594 ATCATTATAT
66 ACCATTATAT
* *
36670604 ATGTCGGTTTATCTAACTAG
1 TTGTCGGTTTATCTGACTAG
36670624 TGCAGGGTGT
Statistics
Matches: 208, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
74 44 0.21
75 164 0.79
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (75 bp):
TTGTCGGTTTATCTGACTAGCGCTGGGCGCAACTTTCATCAGTTTATCTGACTAGTGCTAGGCAC
ACCATTATAT
Found at i:36670482 original size:40 final size:40
Alignment explanation
Indices: 36670346--36670482 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
36670336 ACTTTCATCA
*
36670346 GTTTATCTGACTAGTGCTAGGCACACCATTATATTTGTTG
1 GTTTATCTGACTAGCGCTAGGCACACCATTATATTTGTTG
* * ** * **
36670386 GTTTATCTGATTAGCGCTGGGTGCA--ATT-T-TCT-TCA
1 GTTTATCTGACTAGCGCTAGGCACACCATTATATTTGTTG
*
36670421 GTTTATCTGACTAGTGCTAGGCACACCATTATATTTGTTG
1 GTTTATCTGACTAGCGCTAGGCACACCATTATATTTGTTG
* *
36670461 GTTTATCCGACTAGCGTTAGGC
1 GTTTATCTGACTAGCGCTAGGC
36670483 GCAACTTTCA
Statistics
Matches: 73, Mismatches: 19, Indels: 10
0.72 0.19 0.10
Matches are distributed among these distances:
35 21 0.29
36 2 0.03
37 4 0.05
38 4 0.05
39 2 0.03
40 40 0.55
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (40 bp):
GTTTATCTGACTAGCGCTAGGCACACCATTATATTTGTTG
Found at i:36670508 original size:35 final size:35
Alignment explanation
Indices: 36670311--36670508 Score: 96
Period size: 35 Copynumber: 5.4 Consensus size: 35
36670301 AATATTGTCG
* * * *
36670311 GTTTATCTGACTAGCGTTGGGCGTAACTTTCATCA
1 GTTTATCTGACTAGCGCTAGGCGCAACTTTCATTA
* * * *
36670346 GTTTATCTGACTAGTGCTAGGCACACCATTAT-ATTTGTTG
1 GTTTATCTGACTAGCGCTAGGCGCAAC-TT-TCA----TTA
* * * *
36670386 GTTTATCTGATTAGCGCTGGGTGCAATTTTC-TTCA
1 GTTTATCTGACTAGCGCTAGGCGCAACTTTCATT-A
* * * *
36670421 GTTTATCTGACTAGTGCTAGGCACACCATTAT-ATTTGTTG
1 GTTTATCTGACTAGCGCTAGGCGCAAC-TT-TCA----TTA
* *
36670461 GTTTATCCGACTAGCGTTAGGCGCAACTTTCATTA
1 GTTTATCTGACTAGCGCTAGGCGCAACTTTCATTA
36670496 GTTTATCTGACTA
1 GTTTATCTGACTA
36670509 ATGTTGCGCA
Statistics
Matches: 116, Mismatches: 31, Indels: 32
0.65 0.17 0.18
Matches are distributed among these distances:
34 2 0.02
35 55 0.47
36 5 0.04
37 2 0.02
38 2 0.02
39 5 0.04
40 43 0.37
41 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (35 bp):
GTTTATCTGACTAGCGCTAGGCGCAACTTTCATTA
Found at i:36676065 original size:67 final size:67
Alignment explanation
Indices: 36675992--36676118 Score: 229
Period size: 67 Copynumber: 1.9 Consensus size: 67
36675982 TTTAACAAAA
36675992 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTT-TTCTTCAAAACACATGGTTGCTGC
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCA-TTTTTCTTCTTCAAAACACATGGTTGCTGC
36676056 CAT
65 CAT
*
36676059 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTG
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTG
36676119 GCTCATTTCA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 5 0.09
67 53 0.91
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (67 bp):
TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGCTGCC
AT
Found at i:36677030 original size:66 final size:67
Alignment explanation
Indices: 36676952--36677077 Score: 184
Period size: 66 Copynumber: 1.9 Consensus size: 67
36676942 TGAAATGAGC
*
36676952 CAACCATATGTTTTGAAGAAGAA-AAATGGTGTTTGGCAAGA-AAAAAATGAGAGAAAAAAATGG
1 CAACCATATGTTTTGAAGAA-AAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAAATGG
36677015 CAG
65 CAG
* * * *
36677018 CAACCATGTGTTTTGAAGAAAAGAAGTGGTGTTTGACAAGAGAGAAAATGAGCGAAAAAA
1 CAACCATATGTTTTGAAGAAAAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAA
36677078 TTTTGTTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
65 2 0.04
66 35 0.66
67 16 0.30
ACGTcount: A:0.47, C:0.08, G:0.25, T:0.20
Consensus pattern (67 bp):
CAACCATATGTTTTGAAGAAAAGAAATGGTGTTTGACAAGAGAAAAAATGAGAGAAAAAAATGGC
AG
Found at i:36680919 original size:19 final size:20
Alignment explanation
Indices: 36680884--36680941 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
36680874 TAGAGGTAGG
36680884 GAAAATAAAAATAAAAAGAA
1 GAAAATAAAAATAAAAAGAA
36680904 GAAAA-AAAAA-AGAAAAGAA
1 GAAAATAAAAATA-AAAAGAA
*
36680923 GGGAAATGAAAAATAAAAA
1 -GAAAAT-AAAAATAAAAA
36680942 AAGGTACAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
18 1 0.03
19 12 0.38
20 9 0.28
22 9 0.28
23 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.07
Consensus pattern (20 bp):
GAAAATAAAAATAAAAAGAA
Found at i:36684696 original size:16 final size:16
Alignment explanation
Indices: 36684672--36684725 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
36684662 TTTGGTTCGC
*
36684672 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
36684688 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
36684704 TGTATTGGAATAGAGG
1 TGTAATGGATTAGAGG
36684720 TGTAAT
1 TGTAAT
36684726 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:36684976 original size:16 final size:16
Alignment explanation
Indices: 36684939--36684980 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36684929 TTAATCATAT
*
36684939 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
36684955 TT-AAATATATTATAA
1 TTAAAATATATTATAA
36684970 TTAAAATATAT
1 TTAAAATATAT
36684981 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:36684987 original size:14 final size:15
Alignment explanation
Indices: 36684948--36684989 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36684938 TTTAAACATA
*
36684948 ATTATTATTAAATAT
1 ATTATAATTAAATAT
36684963 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
36684977 A-TATAATTTAATA
1 ATTATAATTAAATA
36684990 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:36685039 original size:61 final size:61
Alignment explanation
Indices: 36684974--36685161 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
36684964 TTATAATTAA
36684974 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
36685035 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
36685094 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
36685155 AATATAT
1 AATATAT
36685162 GATACTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 24 0.25
61 37 0.38
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:36685087 original size:120 final size:120
Alignment explanation
Indices: 36684942--36685171 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
36684932 ATCATATTTA
36684942 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
36685007 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
36685062 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
36685127 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
36685172 TTTACTCAAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:36685107 original size:14 final size:15
Alignment explanation
Indices: 36685058--36685109 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
36685048 ATAAAATATA
36685058 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
36685073 TATTAAATATATTAT
1 AATTAAATATATTAT
36685088 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
36685101 AATTTAATA
1 AATTAAATA
36685110 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:36685160 original size:59 final size:59
Alignment explanation
Indices: 36684977--36685160 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
36684967 TAATTAAAAT
36684977 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
36685036 ATAT-ATGATACTATAAAA-TATAAATTAA-CATAATTATTATTAAAT-ATATTATAATTAAA--
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATC--AA-TATTCTTATATGA-ATT-TACTCAAATC
36685095 AT-
57 ATA
36685097 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
36685156 ATATA
1 ATATA
36685161 TGATACTATA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 7 0.07
59 20 0.21
60 10 0.11
61 15 0.16
62 7 0.07
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:36695977 original size:25 final size:25
Alignment explanation
Indices: 36695923--36695977 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
36695913 AAACATTAAA
*
36695923 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
36695948 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
36695972 TATTAA
1 T-TTAA
36695978 GATAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:36710637 original size:6 final size:7
Alignment explanation
Indices: 36710622--36710646 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36710612 ATTGCATAGT
36710622 AAAATAA
1 AAAATAA
36710629 AAAATAA
1 AAAATAA
36710636 AAAATAA
1 AAAATAA
36710643 AAAA
1 AAAA
36710647 AATTATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:36732667 original size:40 final size:40
Alignment explanation
Indices: 36732423--36732687 Score: 319
Period size: 40 Copynumber: 6.7 Consensus size: 40
36732413 TTGAACGATG
* * *
36732423 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
36732463 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
36732503 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
36732543 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
36732583 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
36732622 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
* *
36732663 -CCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36732688 AACGAGGAGC
Statistics
Matches: 207, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
39 35 0.17
40 159 0.77
41 12 0.06
42 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:36732679 original size:119 final size:121
Alignment explanation
Indices: 36732423--36732687 Score: 330
Period size: 119 Copynumber: 2.2 Consensus size: 121
36732413 TTGAACGATG
* * *
36732423 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
36732487 TGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
66 TGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
* *
36732543 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGC
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGC
* ** *
36732603 ATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
63 ATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AA
* *
36732663 -CCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36732688 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
118 2 0.02
119 79 0.63
120 34 0.27
121 11 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:36732709 original size:79 final size:76
Alignment explanation
Indices: 36732424--36732720 Score: 285
Period size: 80 Copynumber: 3.7 Consensus size: 76
36732414 TGAACGATGT
* * * *
36732424 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTAAATCCGG-TTAAG-TCCGAAGGCATTT
36732488 GTGCGAGATACTAAA
62 GTGCGAGATACTAAA
* * *
36732503 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-GACTAAATCCGG-TTAAG-TCCGAAGGCATT
*
36732567 TGTGCGAGATACTAATT
61 TGTGCGAGATACTAA-A
*
36732584 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAAATCC-GGTTAAGT-CCGAAGGCATTTG
*
36732648 TGCGAGTTACTATAA
63 TGCGAGATACTA-AA
* * ** * *
36732663 CCGGGCTATGTCCCGAAGACATTTGAACGAGGAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTAAATCCGGTT-AAGTCCGAAGG
36732721 TACGTGATTT
Statistics
Matches: 188, Mismatches: 19, Indels: 21
0.82 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 78 0.41
80 101 0.54
81 8 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (76 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAAATCCGGTTAAGTCCGAAGGCATTTGTGC
GAGATACTAAA
Found at i:36735616 original size:21 final size:20
Alignment explanation
Indices: 36735592--36735630 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
36735582 AACTAATCCA
*
36735592 TAATTAATAGTTAAGGTTGTG
1 TAATTAATAGAT-AGGTTGTG
36735613 TAATTAATAGATAGGTTG
1 TAATTAATAGATAGGTTG
36735631 ATATTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (20 bp):
TAATTAATAGATAGGTTGTG
Found at i:36737534 original size:25 final size:25
Alignment explanation
Indices: 36737506--36737557 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
36737496 AATCGTCTTT
36737506 AAATCAATTCGAATAAAATCAAATC
1 AAATCAATTCGAATAAAATCAAATC
** * *
36737531 AAATTGATTGGAATCAAATCAAATC
1 AAATCAATTCGAATAAAATCAAATC
36737556 AA
1 AA
36737558 GATATTTGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (25 bp):
AAATCAATTCGAATAAAATCAAATC
Found at i:36740798 original size:3 final size:3
Alignment explanation
Indices: 36740790--36740814 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
36740780 AATTTTGTTA
36740790 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
36740815 TGTGTGTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:36743270 original size:16 final size:16
Alignment explanation
Indices: 36743249--36743281 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36743239 GCTGCCCCTC
36743249 TTTGCTCATTTTCGTG
1 TTTGCTCATTTTCGTG
36743265 TTTGCTCATTTTCGTG
1 TTTGCTCATTTTCGTG
36743281 T
1 T
36743282 AACGAGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.18, G:0.18, T:0.58
Consensus pattern (16 bp):
TTTGCTCATTTTCGTG
Found at i:36745597 original size:79 final size:81
Alignment explanation
Indices: 36745464--36745645 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
36745454 AATGATGTCT
* *
36745464 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
*
36745528 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
36745544 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
* *
36745606 TGCGAGTTACTATAACT
65 TGCGAGATACTATAACC
*
36745623 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36745646 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
GCGAGATACTATAACC
Found at i:36745652 original size:40 final size:40
Alignment explanation
Indices: 36745464--36745645 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
36745454 AATGATGTCT
* * * *
36745464 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * *
36745504 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
36745544 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
36745583 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
36745623 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36745646 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:36745667 original size:79 final size:79
Alignment explanation
Indices: 36745514--36745668 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
36745504 GGACTAAGAT
* * **
36745514 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
36745579 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
36745593 CCGAAGGCAATTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
36745656 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
36745669 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.58
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:36751675 original size:11 final size:11
Alignment explanation
Indices: 36751655--36751684 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
36751645 TGTTCTAAAT
36751655 ATTA-CTCTGA
1 ATTATCTCTGA
36751665 ATTATCTCTGA
1 ATTATCTCTGA
36751676 ATTATCTCT
1 ATTATCTCT
36751685 AAATAACACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.21
11 15 0.79
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (11 bp):
ATTATCTCTGA
Found at i:36755214 original size:19 final size:19
Alignment explanation
Indices: 36755190--36755230 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36755180 TTTGAAACTT
*
36755190 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATG-AATG
36755209 TAATGCAAATGAATGAATG
1 TAATGCAAATGAATGAATG
36755228 TAA
1 TAA
36755231 AAAGAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (19 bp):
TAATGCAAATGAATGAATG
Found at i:36760309 original size:22 final size:22
Alignment explanation
Indices: 36760284--36760326 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36760274 ACACCAAAAC
*
36760284 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCATTTAGCGGCGCTTTTTT
*
36760306 AGGCATTTAGCGGTGCTTTTT
1 AGGCATTTAGCGGCGCTTTTT
36760327 AGCGTCGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.16, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCATTTAGCGGCGCTTTTTT
Found at i:36760461 original size:43 final size:43
Alignment explanation
Indices: 36760398--36760647 Score: 338
Period size: 43 Copynumber: 5.8 Consensus size: 43
36760388 GCGTCGCTAA
* *
36760398 CTTTAGCGGCGCTTTTCCCACAAACGTCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
*
36760441 CTTTAACGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
* * *
36760484 CTTTAGCGGCGCTTTACCCATAAACACCGCTAAAGACCAGAAC
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
* * **
36760527 CTTTAGTGGCGTTTTACCCACAAACGCCGCTAAAGATTAGGAC
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
* **
36760570 CTTTAGCGGTGCTTTTTCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
* * * * *
36760613 CTTTAGCGGTGCTTTCCCCAAAAATGCCACTAAAG
1 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAG
36760648 GTCACGAAAA
Statistics
Matches: 181, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 181 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCAGGAC
Found at i:36761288 original size:23 final size:23
Alignment explanation
Indices: 36761253--36761485 Score: 219
Period size: 23 Copynumber: 10.2 Consensus size: 23
36761243 CAAGTTAAAT
36761253 TTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* **
36761276 TTTAACA-TCTCAATTTTTAGCAAC
1 TTAAACACT-TCAATTTGCAGC-AC
36761300 -TAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
* *
36761322 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAC
*
36761345 TTAAACACTTAAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
** * *
36761368 TTAAACA-TATCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAC
* * *
36761391 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AC
* *
36761413 TAAAACA-TCTCAATTTCCAGCAAC
1 TTAAACACT-TCAATTTGCAGC-AC
*
36761437 -TAAGCACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
36761459 TTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTGCAGCAC
36761482 TTAA
1 TTAA
36761486 TGTGACAGCC
Statistics
Matches: 169, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
22 20 0.12
23 145 0.86
24 4 0.02
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (23 bp):
TTAAACACTTCAATTTGCAGCAC
Found at i:36763186 original size:39 final size:40
Alignment explanation
Indices: 36763086--36763270 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
36763076 TTGAATGATG
* * *
36763086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36763126 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36763166 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36763205 TCCGGGTTAAGTCCCGAAGGCAATTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36763246 -CCGGGCTATGTCCGGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36763271 AACGAATAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36763252 original size:79 final size:81
Alignment explanation
Indices: 36763087--36763270 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 81
36763077 TGAATGATGT
*
36763087 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* *
36763151 GTGCGAGATACTAATT
66 GTACGAGATACTAATA
* * * * **
36763167 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
36763229 TGTACGAGTTACT-ATAA
65 TGTACGAGATACTAAT-A
* *
36763246 CCGGGCTATGTCCGGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36763271 AACGAATAGC
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.63
80 29 0.33
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTACGAGATACTAATA
Found at i:36764664 original size:23 final size:23
Alignment explanation
Indices: 36764634--36764857 Score: 190
Period size: 23 Copynumber: 9.8 Consensus size: 23
36764624 CGGGGTGTTA
36764634 CACTTAAACACTTCAATTTACAG
1 CACTTAAACACTTCAATTTACAG
* * *
36764657 CATTTAAACACTTAAATTTGCAG
1 CACTTAAACACTTCAATTTACAG
* *
36764680 CACTTAAACA-TATCAATTAACAA
1 CACTTAAACACT-TCAATTTACAG
* * *
36764703 CATTTATACACCTCAA-TTACAG
1 CACTTAAACACTTCAATTTACAG
* * *
36764725 CGA-TAAAACA-TCTAAATTTCCAG
1 C-ACTTAAACACT-TCAATTTACAG
* *
36764748 CAAC-TAAGCACTTCAATTTGCAG
1 C-ACTTAAACACTTCAATTTACAG
* * *
36764771 CACTTCAACACTTCAATTTGCAA
1 CACTTAAACACTTCAATTTACAG
36764794 CACTTAAACACTTCAATTTACAG
1 CACTTAAACACTTCAATTTACAG
* * *
36764817 CATTTAAACACTTAAATTTGCAG
1 CACTTAAACACTTCAATTTACAG
36764840 CACTTAAACA-TATCAATT
1 CACTTAAACACT-TCAATT
36764858 AACAACATTC
Statistics
Matches: 158, Mismatches: 34, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
22 17 0.11
23 140 0.89
24 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (23 bp):
CACTTAAACACTTCAATTTACAG
Done.