Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 115 of 222
Found at i:37096492 original size:15 final size:15
Alignment explanation
Indices: 37096472--37096521 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
37096462 ATTACCAAAA
37096472 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
37096487 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
*
37096502 GAGAATAGTTTATTAAAT
1 TAG---AGTTTATTAAAT
37096520 TA
1 TA
37096522 AAATAGAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 17 0.57
18 13 0.43
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (15 bp):
TAGAGTTTATTAAAT
Found at i:37096526 original size:18 final size:18
Alignment explanation
Indices: 37096490--37096527 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37096480 ATTAAATTAG
*
37096490 AGTTTATTAAATGAGAAT
1 AGTTTATTAAATGAAAAT
*
37096508 AGTTTATTAAATTAAAAT
1 AGTTTATTAAATGAAAAT
37096526 AG
1 AG
37096528 AGTTATTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.39
Consensus pattern (18 bp):
AGTTTATTAAATGAAAAT
Found at i:37096803 original size:17 final size:18
Alignment explanation
Indices: 37096781--37096816 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
37096771 GGTGCCGCCA
37096781 CAGGTTTTT-TTTTTTTG
1 CAGGTTTTTATTTTTTTG
37096798 CAGGTTTTTAGTTTTTTTG
1 CAGGTTTTTA-TTTTTTTG
37096817 GTATATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.08, C:0.06, G:0.19, T:0.67
Consensus pattern (18 bp):
CAGGTTTTTATTTTTTTG
Found at i:37096850 original size:27 final size:27
Alignment explanation
Indices: 37096819--37096879 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
37096809 TTTTTTTGGT
* *
37096819 ATATTTTGGTAAATAAAAAAATTTATG
1 ATATTTTGGTAAATAAAAAAAGTTATA
37096846 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
37096873 ATATTTT
1 ATATTTT
37096880 AGTTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:37100402 original size:29 final size:31
Alignment explanation
Indices: 37100364--37100498 Score: 93
Period size: 29 Copynumber: 4.5 Consensus size: 31
37100354 AACTTTATAG
*
37100364 AAGTGGCTCACATAAAGGTCAAACCTTTA-AA
1 AAGT-GCTCAAATAAAGGTCAAACCTTTACAA
* * * *
37100395 AA-TGCTCATATAAGGGTCTAACATTTACAA
1 AAGTGCTCAAATAAAGGTCAAACCTTTACAA
*
37100425 AAGTGCTCAAATGAAAGCT-AAACCTTT-C-A
1 AAGTGCTCAAAT-AAAGGTCAAACCTTTACAA
* * * ***
37100454 AAGAGCTCAAAT-AAGAGCCAAAACTTTTTGA
1 AAGTGCTCAAATAAAG-GTCAAACCTTTACAA
37100485 AAGTGCTCAAATAA
1 AAGTGCTCAAATAA
37100499 GAGCTTCTCA
Statistics
Matches: 81, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
27 3 0.04
29 39 0.48
30 6 0.07
31 28 0.35
32 5 0.06
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (31 bp):
AAGTGCTCAAATAAAGGTCAAACCTTTACAA
Found at i:37100494 original size:31 final size:30
Alignment explanation
Indices: 37100424--37100502 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
37100414 AACATTTACA
*
37100424 AAAGTGCTCAAATGAA-AG-CTAAACCTTTC
1 AAAGTGCTCAAAT-AAGAGCCAAAACCTTTC
* * *
37100453 AAAGAGCTCAAATAAGAGCCAAAACTTTTTG
1 AAAGTGCTCAAATAAGAGCCAAAAC-CTTTC
37100484 AAAGTGCTCAAATAAGAGC
1 AAAGTGCTCAAATAAGAGC
37100503 TTCTCAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 2 0.05
29 14 0.33
30 5 0.12
31 21 0.50
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (30 bp):
AAAGTGCTCAAATAAGAGCCAAAACCTTTC
Found at i:37100614 original size:19 final size:19
Alignment explanation
Indices: 37100590--37100632 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
37100580 ACTTTATTCT
*
37100590 AAATACGTTAGAATTCATC
1 AAATACGTTAGAATTCACC
37100609 AAATACGTTAGAATTCACC
1 AAATACGTTAGAATTCACC
37100628 AAATA
1 AAATA
37100633 TTTATAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
AAATACGTTAGAATTCACC
Found at i:37109834 original size:25 final size:24
Alignment explanation
Indices: 37109806--37109869 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 24
37109796 CAAAGAATAC
*
37109806 GCCACATAGGCATTT-CAAATAATTT
1 GCCACA-AGGC-TTTACAAATAACTT
*
37109831 GCCACAAGGGCTTTACAGATAACTT
1 GCCACAA-GGCTTTACAAATAACTT
37109856 GCCACAAAGGCTTT
1 GCCAC-AAGGCTTT
37109870 GTTTGGTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.12
25 28 0.82
26 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (24 bp):
GCCACAAGGCTTTACAAATAACTT
Found at i:37123798 original size:16 final size:16
Alignment explanation
Indices: 37123777--37123827 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
37123767 TGAATTACTA
*
37123777 ATTACAGCTCTGTTCC
1 ATTACAGCTCTATTCC
* *
37123793 ATTACAACTGTATTCC
1 ATTACAGCTCTATTCC
37123809 ATTACAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
37123825 ATT
1 ATT
37123828 CACCCCAACC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:37128498 original size:45 final size:45
Alignment explanation
Indices: 37128441--37128565 Score: 187
Period size: 45 Copynumber: 2.8 Consensus size: 45
37128431 CATATGATCT
* * *
37128441 CATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATAATGATGC
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
* * * *
37128486 CATATCATCTTTCAACTATGGTCGTACTCATTTTAATTATGATAC
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
37128531 CATAACATCTTTCAGCTATGGTCTTACTCATTTTA
1 CATAACATCTTTCAGCTATGGTCTTACTCATTTTA
37128566 GGAATATAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.42
Consensus pattern (45 bp):
CATAACATCTTTCAGCTATGGTCTTACTCATTTTAATAATGATAC
Found at i:37132500 original size:353 final size:354
Alignment explanation
Indices: 37131852--37132559 Score: 1211
Period size: 353 Copynumber: 2.0 Consensus size: 354
37131842 CTCGTATACT
37131852 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGGTGTACG
1 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATT-GGTGTACG
* *
37131917 AATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATATCCCGAGACATGGGTAAATGAT
65 AATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGAT
37131982 ATCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAG
130 ATCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAG
*
37132047 ATGACATGATCATTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAG
195 ATGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAG
37132112 ATGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGG
260 ATGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGG
37132177 TAACAAACTTATGACAAAGACATTGGACAA
325 TAACAAACTTATGACAAAGACATTGGACAA
* *
37132207 TTGATGTAAGTGAAAGCCTGAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCGTT-GTGTACGA
1 TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGTGTACGA
* * *
37132271 CTTTTGCATTTTGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
66 ATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
37132336 TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAGA
131 TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAGA
* * * * **
37132401 TGACTTGATCACTATTTGATAGTGATTGACTTTTCATTAAAGAATATGTAATGGTTACTGTGAGA
196 TGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAGA
* * * *
37132466 TTAAATAGGATCATATTGGGAGAATGAATATTATCCCAGAGAGATTAAGGATATCCTATGAGGGT
261 TGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGGT
* * *
37132531 AACACACTTATGACAAGGTCATTGGACAA
326 AACAAACTTATGACAAAGACATTGGACAA
37132560 GCATTAATCG
Statistics
Matches: 332, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
353 278 0.84
355 54 0.16
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (354 bp):
TTGATGTAAGTGAAAGCCTAAGTTCGAATGGATAAGGAATCGGAAGCTGGTGCATTGGTGTACGA
ATTTTGCAATATGTAGTGTCATTCACAATAGTGGAATTCATAGCCCGAGACATGGGAAAATGATA
TCCTCTCATTGGCATTACATGGTGATGGAAACTAAACGTGACCATGGGTTCGTATTTGTGATAGA
TGACATGATCACTATTTGATAATGATTGAATTTTCATGAAAGAATATGTAATGGTTACCATGAGA
TGAAATAGGATCACATTGGGAGAATGAATATTATCCAAAAGAGATTAAGGATATCCTATGAGGGT
AACAAACTTATGACAAAGACATTGGACAA
Found at i:37140696 original size:24 final size:25
Alignment explanation
Indices: 37140652--37140698 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
37140642 TAAAAAAATT
*
37140652 ATATTTGTTAAAGAATGTTAAAAGC
1 ATATTTGTTAAAGAATATTAAAAGC
37140677 ATATTTG-TAAA-AATTATTAAAA
1 ATATTTGTTAAAGAA-TATTAAAA
37140699 AAATATTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 11 0.55
25 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (25 bp):
ATATTTGTTAAAGAATATTAAAAGC
Found at i:37141033 original size:19 final size:17
Alignment explanation
Indices: 37140992--37141045 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
37140982 TTGTACTTAA
37140992 ATTTTTAAATATATTTT
1 ATTTTTAAATATATTTT
*
37141009 ATTTTTAAATTTATTTAT
1 ATTTTTAAATATATTT-T
37141027 CATTTTT-AATAATATTTT
1 -ATTTTTAAAT-ATATTTT
37141045 A
1 A
37141046 AATTTTTCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 16 0.50
18 5 0.16
19 11 0.34
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTTTAAATATATTTT
Found at i:37142293 original size:6 final size:6
Alignment explanation
Indices: 37142282--37142309 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37142272 TCACTTTACT
37142282 ACTTCC ACTTCC ACTTCC ACTTCC ACTT
1 ACTTCC ACTTCC ACTTCC ACTTCC ACTT
37142310 ATGAAGTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.46, G:0.00, T:0.36
Consensus pattern (6 bp):
ACTTCC
Found at i:37155707 original size:89 final size:85
Alignment explanation
Indices: 37155613--37155807 Score: 223
Period size: 88 Copynumber: 2.2 Consensus size: 85
37155603 CTTAATGGTG
* * * *
37155613 CAAAAAG-CTCTCAAACTTAAAAAAAAAACAATTAAGTCCATGCT-TTTTTTTTTGCACTCATTT
1 CAAAAAGAC-CTCAAACTTAAAAAAAAAA-AATTAA-TCC--CCTACTTTTTTTTACACTCAATT
37155676 GGGTACTTAAACTTTCAAAATGCAT
61 GGGTACTTAAACTTTCAAAATGCAT
** *
37155701 CAAAAAAGACCTCAAACCTTTTCAAAAAAGAAATTAATCCCCTACTTTTTTTTACACTCAATTGG
1 C-AAAAAGACCTCAAA-C-TTAAAAAAAAAAAATTAATCCCCTACTTTTTTTTACACTCAATTGG
*
37155766 GTACTTGAACTTTCAAAATGCAT
63 GTACTTAAACTTTCAAAATGCAT
37155789 CAAAAAGACCCTCAAACTT
1 CAAAAAGA-CCTCAAACTT
37155808 TTCAAAAAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
86 2 0.02
87 10 0.11
88 49 0.53
89 15 0.16
90 8 0.09
91 9 0.10
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (85 bp):
CAAAAAGACCTCAAACTTAAAAAAAAAAAATTAATCCCCTACTTTTTTTTACACTCAATTGGGTA
CTTAAACTTTCAAAATGCAT
Found at i:37155816 original size:88 final size:88
Alignment explanation
Indices: 37155658--37155837 Score: 274
Period size: 88 Copynumber: 2.0 Consensus size: 88
37155648 GTCCATGCTT
* *
37155658 TTTTTTTTGCACTCATTTGGGTACTTAAACTTTCAAAATGCATCAAAAAAGACCTCAAACCTTTT
1 TTTTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATGCATCAAAAAAGACCTCAAACCTTTT
*
37155723 CAAAAAAGAAATTAATCCCCTAC
66 CAAAAAAGAAATTAAGCCCCTAC
*
37155746 TTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGCATC-AAAAAGACCCTCAAA-CTTT
1 TTTTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATGCATCAAAAAAGA-CCTCAAACCTTT
* *
37155809 TCAAAAAAGGCAATTAAGCCCCTGC
65 TCAAAAAA-GAAATTAAGCCCCTAC
37155834 TTTT
1 TTTT
37155838 GTTAAAAATT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
87 19 0.23
88 65 0.77
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (88 bp):
TTTTTTTTACACTCAATTGGGTACTTAAACTTTCAAAATGCATCAAAAAAGACCTCAAACCTTTT
CAAAAAAGAAATTAAGCCCCTAC
Found at i:37155946 original size:10 final size:10
Alignment explanation
Indices: 37155933--37155976 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
37155923 TAAAAATTAG
37155933 AAAAAAATGT
1 AAAAAAATGT
*
37155943 -AAAAAACGT
1 AAAAAAATGT
*
37155952 AAAAAAATAT
1 AAAAAAATGT
37155962 AAAAAAATTGT
1 AAAAAAA-TGT
37155973 AAAA
1 AAAA
37155977 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 8 0.29
10 14 0.50
11 6 0.21
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (10 bp):
AAAAAAATGT
Found at i:37156021 original size:27 final size:28
Alignment explanation
Indices: 37155954--37156030 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
37155944 AAAAACGTAA
* *
37155954 AAAAATATAAAAAAATTGTAAAATTTTAT
1 AAAAATAT-AAAAAATTATAAAATTATAT
**
37155983 AAAAATCGAAAAAATTATAAAA-TATAT
1 AAAAATATAAAAAATTATAAAATTATAT
* **
37156010 AGAAATATAAAATTTTATAAA
1 AAAAATATAAAAAATTATAAA
37156031 CTCATAAGAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 20 0.51
28 13 0.33
29 6 0.15
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (28 bp):
AAAAATATAAAAAATTATAAAATTATAT
Found at i:37156302 original size:44 final size:41
Alignment explanation
Indices: 37156236--37156371 Score: 134
Period size: 44 Copynumber: 3.2 Consensus size: 41
37156226 ATTTTTATAA
*
37156236 AATTTTAAAAAATTTATTTTTTTACGATTTTTATAAAAAATTCT
1 AATTTTTAAAAATTTA-TTTTTTA--ATTTTTATAAAAAATTCT
* * *
37156280 AATTTTTAATAAATTTATTTTTTATATTTTTATTAAAATTTAAT
1 AATTTTTAA-AAATTTATTTTTTA-ATTTTTATAAAAAATT-CT
*
37156324 AATATTTCT-AAAATTTA-TTTTTAAATTTTA-AAAAAATTCT
1 AAT-TTT-TAAAAATTTATTTTTTAATTTTTATAAAAAATTCT
37156364 AATTTTTA
1 AATTTTTA
37156372 GTAAGAGCAG
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 4 0.05
41 6 0.08
42 6 0.08
43 20 0.26
44 26 0.33
45 11 0.14
46 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (41 bp):
AATTTTTAAAAATTTATTTTTTAATTTTTATAAAAAATTCT
Found at i:37157843 original size:86 final size:83
Alignment explanation
Indices: 37157721--37157924 Score: 245
Period size: 86 Copynumber: 2.4 Consensus size: 83
37157711 TAAGTGTAGG
* * *
37157721 GGCTTAATT-TTTTTTTAAAAAATTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCA
1 GGCTTAATTGTTTTTTTTAAAAGTTTGAGGCT-TTTTTGATGCATTTTGAAAGTTCAAGTACCCA
37157785 ATTGAGTGAAAAAAAACAG-
65 ATTGAGTGAAAAAAAA-AGA
* * * * *
37157804 GGATTTAATTGGTTTTTTTTAAAAGTTTGAGGACTTTTTTTATGCATTTTGAAAGTTTAAGTGCT
1 GG-CTTAATT-GTTTTTTTTAAAAGTTTGAGG-CTTTTTTGATGCATTTTGAAAGTTCAAGTACC
*
37157869 CAATTGAGTGCAAAAAAAAGA
63 CAATTGAGTGAAAAAAAAAGA
37157890 GGCTTAATTGTTTTTTTT--AAGTTTGAGGGCTTTTT
1 GGCTTAATTGTTTTTTTTAAAAGTTTGA-GGCTTTTT
37157925 ACACCCTTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
82 14 0.13
83 4 0.04
84 15 0.14
85 8 0.08
86 63 0.60
87 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (83 bp):
GGCTTAATTGTTTTTTTTAAAAGTTTGAGGCTTTTTTGATGCATTTTGAAAGTTCAAGTACCCAA
TTGAGTGAAAAAAAAAGA
Found at i:37159117 original size:24 final size:25
Alignment explanation
Indices: 37159090--37159136 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
37159080 TTATAATAAT
*
37159090 TTTTATATTACA-TTAATGTTTATA
1 TTTTAAATTACATTTAATGTTTATA
*
37159114 TTTTAAATTAGATTTAATGTTTA
1 TTTTAAATTACATTTAATGTTTA
37159137 GGATTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (25 bp):
TTTTAAATTACATTTAATGTTTATA
Found at i:37159791 original size:12 final size:12
Alignment explanation
Indices: 37159769--37159797 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37159759 TGTAAATAAG
37159769 TAAAA-AAAATT
1 TAAAACAAAATT
37159780 TAAAACAAAATT
1 TAAAACAAAATT
37159792 TAAAAC
1 TAAAAC
37159798 TTCGATCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAACAAAATT
Found at i:37161013 original size:27 final size:27
Alignment explanation
Indices: 37160975--37161196 Score: 110
Period size: 27 Copynumber: 8.2 Consensus size: 27
37160965 ACAGAAGCTT
*
37160975 TTCTTTCATAAT-TCACCATAAAGGATA
1 TTCTTTCATAATAT-ACCACAAAGGATA
* * *
37161002 TTCTTTCGTAATATGCCACAAAGGTTA
1 TTCTTTCATAATATACCACAAAGGATA
* * * * *
37161029 TTCTTTCATAGTTTGCCACAAAGGTTG
1 TTCTTTCATAATATACCACAAAGGATA
* * * *
37161056 TTTTTTCATAATATGCCACAAAAGTTA
1 TTCTTTCATAATATACCACAAAGGATA
* ** *
37161083 TTCTTTCATAGCT-CGCCACAAAGGCTA
1 TTCTTTCATA-ATATACCACAAAGGATA
* ** * *
37161110 TTCTTTCGTAATACGCCACAAATGTTA
1 TTCTTTCATAATATACCACAAAGGATA
* * *
37161137 TTCTTT--TAATCTTTGCCACAAAGGTTA
1 TTCTTTCATAA--TATACCACAAAGGATA
* * ** *
37161164 TTATTTCGTAATACGCCACAAAGGCTA
1 TTCTTTCATAATATACCACAAAGGATA
37161191 TTCTTT
1 TTCTTT
37161197 TCTGACGTGT
Statistics
Matches: 158, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.02
26 1 0.01
27 149 0.94
28 2 0.01
29 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.38
Consensus pattern (27 bp):
TTCTTTCATAATATACCACAAAGGATA
Found at i:37161034 original size:54 final size:54
Alignment explanation
Indices: 37160975--37161196 Score: 250
Period size: 54 Copynumber: 4.1 Consensus size: 54
37160965 ACAGAAGCTT
* * * *
37160975 TTCTTTCATAATTCACCATAAAGGATATTCTTTCGTAATATGCCACAAAGGTTA
1 TTCTTTCATAATTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGTTA
* * * * * * *
37161029 TTCTTTCATAGTTTGCCACAAAGGTTGTTTTTTCATAATATGCCACAAAAGTTA
1 TTCTTTCATAATTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGTTA
** * *
37161083 TTCTTTCATAGCTCGCCACAAAGGCTATTCTTTCGTAATACGCCACAAATGTTA
1 TTCTTTCATAATTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGTTA
* * *
37161137 TTCTTT--TAATCTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGCTA
1 TTCTTTCATAA--TTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGTTA
37161191 TTCTTT
1 TTCTTT
37161197 TCTGACGTGT
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
52 2 0.01
54 140 0.99
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.38
Consensus pattern (54 bp):
TTCTTTCATAATTCGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGTTA
Found at i:37161067 original size:81 final size:81
Alignment explanation
Indices: 37160978--37161196 Score: 235
Period size: 81 Copynumber: 2.7 Consensus size: 81
37160968 GAAGCTTTTC
* * * * * * **
37160978 TTTCATAATTCACCATAAAGGATATTCTTTCGTAATATGCCACAAAGGTTATTCTTTCATAGTTT
1 TTTCATAATT-GCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGCTATTCTTTCATAATAC
*
37161043 GCCACAAAGGTTGTT-T
65 GCCACAAAGGTTATTCT
* * * *
37161059 TTTCATAATATGCCACAAAAGTTATTCTTTCATAGCT-CGCCACAAAGGCTATTCTTTCGTAATA
1 TTTCATAAT-TGCCACAAAGGTTATTCTTTCGTA-ATACGCCACAAAGGCTATTCTTTCATAATA
*
37161123 CGCCACAAATGTTATTCT
64 CGCCACAAAGGTTATTCT
* ** *
37161141 TTTAATCTTTGCCACAAAGGTTATTATTTCGTAATACGCCACAAAGGCTATTCTTT
1 TTTCATAATTGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGCTATTCTTT
37161197 TCTGACGTGT
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
80 1 0.01
81 103 0.91
82 9 0.08
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (81 bp):
TTTCATAATTGCCACAAAGGTTATTCTTTCGTAATACGCCACAAAGGCTATTCTTTCATAATACG
CCACAAAGGTTATTCT
Found at i:37167325 original size:37 final size:37
Alignment explanation
Indices: 37167255--37167383 Score: 199
Period size: 37 Copynumber: 3.5 Consensus size: 37
37167245 AATACTTATA
* *
37167255 TTTTAATTATGT-GTTAATTC-AAGACTTATGTAATGT
1 TTTTAATTATGTAG-TGATTCAAAGACTTATGTAATAT
*
37167291 TTTTAATTATGTAGTGATTCAAAGACTTACGTAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
*
37167328 TTTTAATTATGTAGTGATTCAAAGATTTATGTAATAT
1 TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
37167365 TTTTAATTATGTAGTGATT
1 TTTTAATTATGTAGTGATT
37167384 TAATTCGGAT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
36 17 0.20
37 69 0.80
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (37 bp):
TTTTAATTATGTAGTGATTCAAAGACTTATGTAATAT
Found at i:37167376 original size:17 final size:17
Alignment explanation
Indices: 37167280--37167377 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
37167270 AATTCAAGAC
*
37167280 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
37167297 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
*
37167316 CTTACGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
* ***
37167334 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
37167353 TTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
37167371 TTATGTA
1 TTATGTA
37167378 GTGATTTAAT
Statistics
Matches: 56, Mismatches: 19, Indels: 12
0.64 0.22 0.14
Matches are distributed among these distances:
17 22 0.39
18 9 0.16
19 10 0.18
20 15 0.27
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:37167398 original size:9 final size:9
Alignment explanation
Indices: 37167384--37167458 Score: 96
Period size: 9 Copynumber: 8.1 Consensus size: 9
37167374 TGTAGTGATT
*
37167384 TAATTCGGA
1 TAATTCGGG
37167393 TAATTCGGG
1 TAATTCGGG
*
37167402 TAATTTTCAGG
1 TAA--TTCGGG
37167413 TAATTCGGG
1 TAATTCGGG
37167422 TAATTCGGG
1 TAATTCGGG
*
37167431 TAAATCGGG
1 TAATTCGGG
37167440 TAATTCGGG
1 TAATTCGGG
*
37167449 TATTTCGGG
1 TAATTCGGG
37167458 T
1 T
37167459 GATTTTTAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
9 50 0.86
11 8 0.14
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.36
Consensus pattern (9 bp):
TAATTCGGG
Found at i:37168670 original size:19 final size:18
Alignment explanation
Indices: 37168644--37168718 Score: 96
Period size: 19 Copynumber: 4.0 Consensus size: 18
37168634 CTTTTTTCTT
37168644 AACTTCAACAGAAACTAAA
1 AACTTCAACAGAAAC-AAA
* *
37168663 AGCTTCAACATAAACACAA
1 AACTTCAACAGAAACA-AA
*
37168682 AACTTCAATAGAAACCAAA
1 AACTTCAACAGAAA-CAAA
37168701 AACTTCAACAGAAACAAA
1 AACTTCAACAGAAACAAA
37168719 TTTTTGGCCA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
18 5 0.10
19 41 0.85
20 2 0.04
ACGTcount: A:0.57, C:0.23, G:0.05, T:0.15
Consensus pattern (18 bp):
AACTTCAACAGAAACAAA
Found at i:37168695 original size:38 final size:38
Alignment explanation
Indices: 37168644--37168716 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
37168634 CTTTTTTCTT
* * *
37168644 AACTTCAACAGAAACTAAAAGCTTCAACATAAACACAA
1 AACTTCAACAGAAACCAAAAACTTCAACAGAAACACAA
*
37168682 AACTTCAATAGAAACCAAAAACTTCAACAGAAACA
1 AACTTCAACAGAAACCAAAAACTTCAACAGAAACA
37168717 AATTTTTGGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.56, C:0.23, G:0.05, T:0.15
Consensus pattern (38 bp):
AACTTCAACAGAAACCAAAAACTTCAACAGAAACACAA
Found at i:37184602 original size:24 final size:24
Alignment explanation
Indices: 37184575--37184626 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37184565 TTAGTAAGTC
*
37184575 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37184599 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37184623 AAAT
1 AAAT
37184627 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37186563 original size:24 final size:24
Alignment explanation
Indices: 37186536--37186587 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37186526 TTAGTAAGTC
*
37186536 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37186560 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37186584 AAAT
1 AAAT
37186588 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37187043 original size:18 final size:18
Alignment explanation
Indices: 37187022--37187056 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37187012 TTTTTTAATT
37187022 TGTGTATGTTTTCTTTTG
1 TGTGTATGTTTTCTTTTG
* *
37187040 TGTGTTTGTTTTGTTTT
1 TGTGTATGTTTTCTTTT
37187057 CCTATGTAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.03, G:0.23, T:0.71
Consensus pattern (18 bp):
TGTGTATGTTTTCTTTTG
Found at i:37196010 original size:50 final size:50
Alignment explanation
Indices: 37195928--37196050 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 50
37195918 CTTCAGCAAG
* * * * *
37195928 GGAATGTTGCGACTATGGAGACATTAGCTTGATGTTGC-AATTTCAGTAGA
1 GGAATGTTGCGACTATGAAGACAGTAGATTGATATCGCGAATTT-AGTAGA
* * *
37195978 GGAATATTGCGACTATGAAGATAGTAGATTGATATCGCGACTTTAGTAGA
1 GGAATGTTGCGACTATGAAGACAGTAGATTGATATCGCGAATTTAGTAGA
*
37196028 GGAATGTTGCTACTATGAAGACA
1 GGAATGTTGCGACTATGAAGACA
37196051 ATTTTCTCAA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 57 0.93
51 4 0.07
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (50 bp):
GGAATGTTGCGACTATGAAGACAGTAGATTGATATCGCGAATTTAGTAGA
Found at i:37198128 original size:28 final size:28
Alignment explanation
Indices: 37198088--37198143 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
37198078 GTAAAAAGAA
*
37198088 AGCAAAATTTTCTTCTTCTTTTTTCTTC
1 AGCAAAATTTTCTTCTTCTTCTTTCTTC
37198116 AGCAAAATTTTCTTCTTCTTCTTTCTTC
1 AGCAAAATTTTCTTCTTCTTCTTTCTTC
37198144 CTAACTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.23, G:0.04, T:0.55
Consensus pattern (28 bp):
AGCAAAATTTTCTTCTTCTTCTTTCTTC
Found at i:37207595 original size:18 final size:20
Alignment explanation
Indices: 37207554--37207596 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
37207544 TGGGTGTAAT
*
37207554 AAAATGTATATAATAAAATT
1 AAAATGTATATAATAAAATC
37207574 AAAATGTATA-AAT-AAATC
1 AAAATGTATATAATAAAATC
37207592 AAAAT
1 AAAAT
37207597 TAAGCTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 10 0.45
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (20 bp):
AAAATGTATATAATAAAATC
Found at i:37207599 original size:24 final size:20
Alignment explanation
Indices: 37207553--37207589 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37207543 ATGGGTGTAA
37207553 TAAAATGTATATAATAAAAT
1 TAAAATGTATATAATAAAAT
37207573 TAAAATGTATA-AATAAA
1 TAAAATGTATATAATAAA
37207590 TCAAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
TAAAATGTATATAATAAAAT
Found at i:37212228 original size:23 final size:23
Alignment explanation
Indices: 37212179--37212241 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
37212169 AGACCCAATC
*
37212179 ATATATATTTTTATTTTTAAGAG
1 ATATATATTTGTATTTTTAAGAG
* *
37212202 -TATATATTTGTATTTTTATGTG
1 ATATATATTTGTATTTTTAAGAG
*
37212224 ATATATATATGTATTTTT
1 ATATATATTTGTATTTTT
37212242 TTTACTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 19 0.54
23 16 0.46
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (23 bp):
ATATATATTTGTATTTTTAAGAG
Found at i:37213484 original size:23 final size:24
Alignment explanation
Indices: 37213441--37213498 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
37213431 TAATTCATTC
*
37213441 ATTTATATAAATAAAACAATAAAT
1 ATTTATATATATAAAACAATAAAT
*
37213465 ATTTAT-TATATAATAA-AATATAT
1 ATTTATATATATAA-AACAATAAAT
37213488 A-TTATATATAT
1 ATTTATATATAT
37213499 CATTATGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 4 0.13
23 18 0.60
24 8 0.27
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTATATATATAAAACAATAAAT
Found at i:37213769 original size:71 final size:72
Alignment explanation
Indices: 37213688--37213852 Score: 196
Period size: 71 Copynumber: 2.3 Consensus size: 72
37213678 TATATGTACT
* * * *
37213688 AAAAATAATGATATTTGAAATAATT-AATTGATTTAATAATATTATAATTTTTC-ATACCCATAA
1 AAAAAAAATGATATTTGAAATAATTGAATT-ATTTAATAATATTAGAA-TTTACAATACCCACAA
37213751 TGTAGGT-G
64 TGTAGGTAG
* * *
37213759 AAAAAAAATGATATTTGAAATAATTGTATTATTTTATAATATTAGAATTTACAATATCCACAATG
1 AAAAAAAATGATATTTGAAATAATTGAATTATTTAATAATATTAGAATTTACAATACCCACAATG
37213824 TAGGTAG
66 TAGGTAG
*
37213831 AAAAAATAA--ATATTTGACATAA
1 AAAAAA-AATGATATTTGAAATAA
37213853 AAAATATAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 4 0.05
71 66 0.80
72 10 0.12
73 2 0.02
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (72 bp):
AAAAAAAATGATATTTGAAATAATTGAATTATTTAATAATATTAGAATTTACAATACCCACAATG
TAGGTAG
Found at i:37214088 original size:56 final size:56
Alignment explanation
Indices: 37213995--37214142 Score: 156
Period size: 56 Copynumber: 2.6 Consensus size: 56
37213985 AATAAAGGAG
* * *
37213995 TTATTAATTAAAAATATGAATTAAAAATAAATTTAAAAAA-CTTGAACACAACAT-AT
1 TTATTAATTAAAAACATTAATTAAAAATAAA-ATAAAAAATCTTGAA-ACAACATAAT
* * *
37214051 TTATTAACTAAAAACATTAATTAAAAATTAAAATAAAAAATCTTTAAACAACGTGAAT
1 TTATTAATTAAAAACATTAATTAAAAA-TAAAATAAAAAATCTTGAAACAACAT-AAT
* *
37214109 TAATTTAATTAAAAGCATTAATTAAAAAGTAAAA
1 TTA-TTAATTAAAAACATTAATTAAAAA-TAAAA
37214143 ATTAGAAATT
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
56 37 0.48
57 9 0.12
58 4 0.05
59 27 0.35
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (56 bp):
TTATTAATTAAAAACATTAATTAAAAATAAAATAAAAAATCTTGAAACAACATAAT
Found at i:37216605 original size:22 final size:23
Alignment explanation
Indices: 37216563--37216607 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
37216553 TATTCATTTT
*
37216563 TTTTTTTACTTTTGTACTTAAAA
1 TTTTTTTACTTTAGTACTTAAAA
*
37216586 TTTTTTTA-TTTAGTAGTTAAAA
1 TTTTTTTACTTTAGTACTTAAAA
37216608 GTAAATGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (23 bp):
TTTTTTTACTTTAGTACTTAAAA
Found at i:37221204 original size:22 final size:23
Alignment explanation
Indices: 37221171--37221226 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
37221161 TAGTTTTAGG
**
37221171 TTTAG-TTTTCTCTA-GGTTTTC
1 TTTAGTTTTTCTCTACACTTTTC
37221192 TTTAGTTTTTCTCTACACTTTTC
1 TTTAGTTTTTCTCTACACTTTTC
37221215 TTTA-TTTTTCTC
1 TTTAGTTTTTCTC
37221227 ATTTTCTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 5 0.16
22 17 0.55
23 9 0.29
ACGTcount: A:0.11, C:0.18, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTAGTTTTTCTCTACACTTTTC
Found at i:37222955 original size:22 final size:20
Alignment explanation
Indices: 37222929--37222971 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
37222919 ATATTTGATG
*
37222929 AATTAATT-TTTTTTTC-TA
1 AATTAATTATGTTTTTCTTA
37222947 AATTAATTATGTTTTTCTTA
1 AATTAATTATGTTTTTCTTA
37222967 AATTA
1 AATTA
37222972 TAAACAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.36
19 7 0.32
20 7 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTAATTATGTTTTTCTTA
Found at i:37229519 original size:21 final size:22
Alignment explanation
Indices: 37229495--37229555 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
37229485 CATGTGAGAG
37229495 GAGGCACATGGCCGTGTG-GCT
1 GAGGCACATGGCCGTGTGAGCT
* * *
37229516 GAGGCACACGCCCATGTGAGCT
1 GAGGCACATGGCCGTGTGAGCT
*
37229538 -AGGGACATGGCCGTGTGA
1 GAGGCACATGGCCGTGTGA
37229556 ACAGACCATG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 29 0.91
22 3 0.09
ACGTcount: A:0.20, C:0.25, G:0.39, T:0.16
Consensus pattern (22 bp):
GAGGCACATGGCCGTGTGAGCT
Found at i:37230272 original size:14 final size:15
Alignment explanation
Indices: 37230217--37230265 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
37230207 GTAAACTTCA
**
37230217 AAAAAAAAGTAACCAT
1 AAAAAAAA-TAAAAAT
*
37230233 AATAAAAATAAAAAT
1 AAAAAAAATAAAAAT
37230248 AAAAAAAATAAAAA-
1 AAAAAAAATAAAAAT
37230262 AAAA
1 AAAA
37230266 CTAATAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 7 0.24
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAAAAAATAAAAAT
Found at i:37230605 original size:10 final size:10
Alignment explanation
Indices: 37230587--37230620 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
37230577 CTCTTTAAGC
*
37230587 TTTAGTTTAA
1 TTTATTTTAA
37230597 TTTATTTTAA
1 TTTATTTTAA
*
37230607 TTTATTTTAC
1 TTTATTTTAA
37230617 TTTA
1 TTTA
37230621 AATATGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (10 bp):
TTTATTTTAA
Found at i:37233577 original size:51 final size:50
Alignment explanation
Indices: 37233444--37233638 Score: 214
Period size: 51 Copynumber: 3.9 Consensus size: 50
37233434 GTGAAAGTGA
*
37233444 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT
* * * *
37233492 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTT
1 -T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT
* * * * * *
37233544 TCGATCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGATGGTAA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-T
* * *
37233596 TGGTCACATGTGTAGTACTATGTGCATGCTACTATGTGAACCG
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
37233639 AACATCATTG
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 39 0.33
51 76 0.64
52 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT
Found at i:37233667 original size:41 final size:42
Alignment explanation
Indices: 37233622--37233713 Score: 98
Period size: 45 Copynumber: 2.1 Consensus size: 42
37233612 ACTATGTGCA
* *
37233622 TGCTACTATG-TGA-ACCGAACATCATTGATTAGTAAGGTGGT
1 TGCTA-TATGTTGACACCGAACATCATTGATTAATAAGGTGAT
* *
37233663 TGCTATGTGTTGATTCCACCGGACATCATTGATTAATAAGGTGAT
1 TGCTATATGTTGA---CACCGAACATCATTGATTAATAAGGTGAT
37233708 TGCTAT
1 TGCTAT
37233714 GTGCTGAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
40 3 0.07
41 8 0.19
45 31 0.74
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TGCTATATGTTGACACCGAACATCATTGATTAATAAGGTGAT
Found at i:37233689 original size:45 final size:45
Alignment explanation
Indices: 37233635--37233729 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
37233625 TACTATGTGA
* * * *
37233635 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
*
37233680 ACCGGACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
37233725 ACCGA
1 ACCGA
37233730 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGATTGCTATGTGCTGAATCC
Found at i:37238243 original size:2 final size:2
Alignment explanation
Indices: 37238236--37238260 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37238226 TGGCAGTGAG
37238236 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
37238261 CCACTTATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37241403 original size:18 final size:18
Alignment explanation
Indices: 37241340--37241403 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
37241330 ATAGATGAGT
*
37241340 AAGAAGATGCGATCAAGG
1 AAGAAGATGTGATCAAGG
*
37241358 AAGAAGATGTAGA-CAAGA
1 AAGAAGATGT-GATCAAGG
* *
37241376 AAAAATATGTGATCAAGG
1 AAGAAGATGTGATCAAGG
*
37241394 AAGGAGATGT
1 AAGAAGATGT
37241404 AGGGGGTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 2 0.06
18 32 0.89
19 2 0.06
ACGTcount: A:0.48, C:0.06, G:0.30, T:0.16
Consensus pattern (18 bp):
AAGAAGATGTGATCAAGG
Found at i:37244894 original size:127 final size:126
Alignment explanation
Indices: 37244663--37244918 Score: 318
Period size: 127 Copynumber: 2.0 Consensus size: 126
37244653 AGGTTTTTAA
* *
37244663 TTTTTATTTTTAATAAATACGATAATTAAAAATAATATATTATTATATTTTATATTATATATTAA
1 TTTTTATTTTTAATAAATAAGATAATTAAAAATAATATATTAATATATTTTATATTATATATTAA
* * * *
37244728 TTGTTATTAACCTTGTATAGGATTAAAATTTTCATTATTTTATCATTATTTTACCTAAGAG
66 TTGTTATTAACCTTATATAGCATTAAAATTATCAATATTTTATCATTATTTTACCTAAGAG
* *
37244789 TTTTTATTTTTAGATAAATAAGATAA-TAACAAATAATATATTAATATATTTTATATTTTATTTT
1 TTTTTATTTTTA-ATAAATAAGATAATTAA-AAATAATATATTAATATATTTTATATTATATATT
** * * * * * **
37244853 AATTGTTATTGTCTTTATATAGCATTAGGAGTTAT-AATATTTTATTATTGTTTTATTTAAGAG
64 AATTGTTATTAACCTTATATAGCATTA-AAATTATCAATATTTTATCATTATTTTACCTAAGAG
37244916 TTT
1 TTT
37244919 GAGTTAAACA
Statistics
Matches: 110, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 15 0.14
127 91 0.83
128 4 0.04
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (126 bp):
TTTTTATTTTTAATAAATAAGATAATTAAAAATAATATATTAATATATTTTATATTATATATTAA
TTGTTATTAACCTTATATAGCATTAAAATTATCAATATTTTATCATTATTTTACCTAAGAG
Found at i:37246842 original size:13 final size:13
Alignment explanation
Indices: 37246824--37246849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37246814 TAAAATTGAA
37246824 CAATTTGCAAAAT
1 CAATTTGCAAAAT
37246837 CAATTTGCAAAAT
1 CAATTTGCAAAAT
37246850 AAGAAGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
CAATTTGCAAAAT
Found at i:37250154 original size:161 final size:162
Alignment explanation
Indices: 37249883--37250203 Score: 504
Period size: 161 Copynumber: 2.0 Consensus size: 162
37249873 ATGTCGCTAG
37249883 CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
1 CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
* ** *
37249948 TTTTATTTCTTATTAACTTGCGTATAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
66 TGTTATTTCTTATTAACTAACGTACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
37250013 ATGAAAATTTGTGGTTTCTTATTAACTTACTA
131 ATGAAAATTTGTGGTTTCTTATTAACTTACTA
* * * * *
37250045 CCTTA-TTACTTTTAGAGGATAT-AAATTTCATTACAATGCTTTCATGATTTTAGGGTACCAAAT
1 CCTTATTTACTTTCAAAGGATATAAAATTT-ATTACAATGCCTCCATGATTCTAGGGTACCAAAT
*
37250108 TTGTTATTTCTTATTAACTAACGTACAATTTTA-CTTAGAATGTAACAAGCACAAATATGAGTTG
65 TTGTTATTTCTTATTAACTAACGTACAA-TTTACCTTAGAATGTAACAAACACAAATATGAGTTG
*
37250172 CAATGAAAATTTGTGGTTTCTTATTCACTTAC
129 CAATGAAAATTTGTGGTTTCTTATTAACTTAC
37250204 GTACAATTTA
Statistics
Matches: 146, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
160 6 0.04
161 131 0.90
162 9 0.06
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (162 bp):
CCTTATTTACTTTCAAAGGATATAAAATTTATTACAATGCCTCCATGATTCTAGGGTACCAAATT
TGTTATTTCTTATTAACTAACGTACAATTTACCTTAGAATGTAACAAACACAAATATGAGTTGCA
ATGAAAATTTGTGGTTTCTTATTAACTTACTA
Found at i:37250226 original size:74 final size:74
Alignment explanation
Indices: 37250104--37250271 Score: 225
Period size: 74 Copynumber: 2.3 Consensus size: 74
37250094 TTAGGGTACC
37250104 AAATTTGTTA-TTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAAC-AAGCACAAATATG
1 AAATTTG-TAGTTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAACAAAG-ACAAATATG
* *
37250167 AGTTGCAATGA
64 AGTTACAATAA
* * * *
37250178 AAATTTGTGGTTTCTTATTCACTTACGTACAA-TTTACGTTAGAGTGTAACAAAGACAAATATGA
1 AAATTTGTAGTTTCTTATTAACTAACGTACAATTTTAC-TTAGAATGTAACAAAGACAAATATGA
37250242 GTTACAATAA
65 GTTACAATAA
37250252 AAATTTGTAGTTTCTATATT
1 AAATTTGTAGTTTCT-TATT
37250272 GATGTCATCT
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
73 6 0.07
74 70 0.84
75 7 0.08
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (74 bp):
AAATTTGTAGTTTCTTATTAACTAACGTACAATTTTACTTAGAATGTAACAAAGACAAATATGAG
TTACAATAA
Found at i:37259292 original size:17 final size:17
Alignment explanation
Indices: 37259239--37259293 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
37259229 GATAGTGGAA
*
37259239 ATTACACACCAAAGAAT
1 ATTACAAACCAAAGAAT
**
37259256 ATTA-AAAATAAACGGAAT
1 ATTACAAACCAAA--GAAT
37259274 ATTACAAACCAAAGAAT
1 ATTACAAACCAAAGAAT
37259291 ATT
1 ATT
37259294 GGTGGTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 5 0.17
17 11 0.37
18 8 0.27
19 6 0.20
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (17 bp):
ATTACAAACCAAAGAAT
Found at i:37261257 original size:31 final size:31
Alignment explanation
Indices: 37261215--37261372 Score: 185
Period size: 31 Copynumber: 5.1 Consensus size: 31
37261205 TGGCAATATA
* *
37261215 TATATCCATATACGAATCAAATTCGGCAACG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * *
37261246 TATATCTATATACATAT-TAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
*
37261276 AATATCCATATACAAATCAAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* *
37261307 TATAACCATATACAAATCAAATTCGGGAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * * *
37261338 TATATCTATA-AAAAATTGAAATTCAGCAATG
1 TATATCCATATACAAA-TCAAATTCGGCAATG
37261369 TATA
1 TATA
37261373 AAACATATAC
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
30 29 0.27
31 78 0.73
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (31 bp):
TATATCCATATACAAATCAAATTCGGCAATG
Found at i:37261318 original size:61 final size:61
Alignment explanation
Indices: 37261216--37261388 Score: 188
Period size: 61 Copynumber: 2.8 Consensus size: 61
37261206 GGCAATATAT
* * * *
37261216 ATATCCATATACGAATCAAATTCGGCAACGTATATCTATATACATATTAATTCGGCAATGA
1 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATATTAATTCGGCAATGA
* * * *
37261277 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACAAATCAAATTCGGGAATGT
1 ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATAT-TAATTCGGCAATGA
* * * * *
37261339 ATATCTATA-AAAAATTGAAATTCAGCAATGTATAAAACATATACAT-TTAA
1 ATATCCATATACAAA-TCAAATTCGGCAATGTAT-AACCATATACATATTAA
37261389 ATTCAAAACA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
61 48 0.51
62 36 0.38
63 10 0.11
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.30
Consensus pattern (61 bp):
ATATCCATATACAAATCAAATTCGGCAATGTATAACCATATACATATTAATTCGGCAATGA
Found at i:37261348 original size:37 final size:31
Alignment explanation
Indices: 37261197--37261383 Score: 164
Period size: 31 Copynumber: 6.0 Consensus size: 31
37261187 CCAATGCTTG
* * *
37261197 AATC-AATTTGGCAATATATATATCCATATACG
1 AATCAAATTCGGCAATGTATA-A-CCATATACA
* * *
37261229 AATCAAATTCGGCAACGTATATCTATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * * *
37261260 TAT-TAATTCGGCAATGAATATCCATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
37261290 AATCAAATTCGGCAATGTATAACCATATACA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * * *
37261321 AATCAAATTCGGGAATGTATATCTATA-AAA
1 AATCAAATTCGGCAATGTATAACCATATACA
* * *
37261351 AATTGAAATTCAGCAATGTATAAAACATATACA
1 AA-TCAAATTCGGCAATGTAT-AACCATATACA
37261384 TTTAAATTCA
Statistics
Matches: 124, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
30 29 0.23
31 72 0.58
32 8 0.06
33 15 0.12
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (31 bp):
AATCAAATTCGGCAATGTATAACCATATACA
Found at i:37266764 original size:23 final size:23
Alignment explanation
Indices: 37266694--37266802 Score: 122
Period size: 23 Copynumber: 5.0 Consensus size: 23
37266684 CCTGTTCAGT
*
37266694 ATACAACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
* *
37266715 A-ACGACACATGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
37266735 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
37266758 ATACGACACATAAAGTGCCTGATG
1 ATACGACACATAAAGTGCCTGA-G
* *
37266782 -TTCGACACATAAATTGCCTGA
1 ATACGACACATAAAGTGCCTGA
37266803 TCGGCAAAGC
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
20 9 0.12
21 24 0.32
23 42 0.55
24 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:37267873 original size:10 final size:10
Alignment explanation
Indices: 37267858--37267889 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
37267848 TAGTTAATAA
37267858 TAATAATATT
1 TAATAATATT
37267868 TAATAATA--
1 TAATAATATT
37267876 TAATAATATT
1 TAATAATATT
37267886 TAAT
1 TAAT
37267890 TCACAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATAATATT
Found at i:37267880 original size:18 final size:19
Alignment explanation
Indices: 37267852--37267889 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
37267842 ATATATTAGT
37267852 TAATAATAATAATATTTAA
1 TAATAATAATAATATTTAA
37267871 TAAT-ATAATAATATTTAA
1 TAATAATAATAATATTTAA
37267889 T
1 T
37267890 TCACAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TAATAATAATAATATTTAA
Found at i:37268082 original size:16 final size:17
Alignment explanation
Indices: 37268046--37268082 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
37268036 TAAGATAATT
37268046 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
37268063 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
37268078 TATAA
1 TATAA
37268083 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:37271634 original size:30 final size:31
Alignment explanation
Indices: 37271579--37271736 Score: 156
Period size: 31 Copynumber: 5.1 Consensus size: 31
37271569 TGGCAATATA
* * *
37271579 TATATCCATATACGAATTAAATTCGGCAACG
1 TATATCCATATACAAATCAAATTCGGCAATG
*
37271610 TATATCTATATACAAATC-AATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * *
37271640 AATATCTATATACAAATCAAATTTGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* * *
37271671 TATAACCATACACCAATCAAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
* ** * * * *
37271702 TAAATATATAAACAATTGAAATTCAGCAATG
1 TATATCCATATACAAATCAAATTCGGCAATG
37271733 TATA
1 TATA
37271737 AAACATATAC
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
30 28 0.27
31 76 0.73
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (31 bp):
TATATCCATATACAAATCAAATTCGGCAATG
Found at i:37271662 original size:61 final size:61
Alignment explanation
Indices: 37271561--37271737 Score: 167
Period size: 62 Copynumber: 2.9 Consensus size: 61
37271551 CCAATGCTCG
* * * * * * * * *
37271561 AATCAATTTGGCAATATATATATCCATATACGAATTAAATTCGGCAACGTATATCTATATACA
1 AATCAATTCGGCAAT-GA-ATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
* *
37271624 AATCAATTCGGCAATGAATATCTATATACAAATCAAATTTGGCAATGTATAACCATACACC
1 AATCAATTCGGCAATGAATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
* * * * *
37271685 AATCAAATTCGGCAATGTAA-ATATATAAACAATTGAAATTCAGCAATGTATAA
1 AATC-AATTCGGCAATG-AATATCTATATACAAATCAAATTCGGCAATGTATAA
37271738 AACATATACG
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
61 39 0.41
62 40 0.42
63 16 0.17
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (61 bp):
AATCAATTCGGCAATGAATATCTATATACAAATCAAATTCGGCAATGTATAACCATACACA
Found at i:37271724 original size:62 final size:60
Alignment explanation
Indices: 37271561--37271737 Score: 160
Period size: 61 Copynumber: 2.9 Consensus size: 60
37271551 CCAATGCTCG
* * * * * *
37271561 AATCAATTTGGCAAT-ATATATATCCATATACGAATTAAATTCGGCAACGTATATCTATATACA
1 AATCAATTCGGCAATGA-ATATAT--ATAAAC-AATTAAATTCGGCAATGTATAACCATACACA
* * * * *
37271624 AATCAATTCGGCAATGAATATCTATATACAAATCAAATTTGGCAATGTATAACCATACACC
1 AATCAATTCGGCAATGAATATATATAAAC-AATTAAATTCGGCAATGTATAACCATACACA
*
37271685 AATCAAATTCGGCAATGTAA-ATATATAAACAATTGAAATTCAGCAATGTATAA
1 AATC-AATTCGGCAATG-AATATATATAAACAATT-AAATTCGGCAATGTATAA
37271738 AACATATACG
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
61 37 0.39
62 36 0.38
63 21 0.22
64 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (60 bp):
AATCAATTCGGCAATGAATATATATAAACAATTAAATTCGGCAATGTATAACCATACACA
Found at i:37276643 original size:22 final size:22
Alignment explanation
Indices: 37276610--37276654 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
37276600 ATTGTTCTAA
37276610 TATTTGATTTA-TTATTCTATTT
1 TATTTGATTTATTTATT-TATTT
37276632 TATTT-ATCTTATTTATTTATTT
1 TATTTGAT-TTATTTATTTATTT
37276654 T
1 T
37276655 GACTTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.10
22 14 0.67
23 5 0.24
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (22 bp):
TATTTGATTTATTTATTTATTT
Found at i:37319534 original size:19 final size:19
Alignment explanation
Indices: 37319506--37319542 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37319496 CCACTTTCAA
37319506 ATTTTACTAAAATTTAAGG
1 ATTTTACTAAAATTTAAGG
* *
37319525 ATTTTTCTAAAGTTTAAG
1 ATTTTACTAAAATTTAAG
37319543 TGGAAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (19 bp):
ATTTTACTAAAATTTAAGG
Found at i:37323780 original size:21 final size:21
Alignment explanation
Indices: 37323743--37323799 Score: 84
Period size: 20 Copynumber: 2.8 Consensus size: 21
37323733 TTTAAAAATA
37323743 TTTTAAAATACTTTTTTT-AT
1 TTTTAAAATACTTTTTTTAAT
37323763 TTTTAAAATACTTTTTTTAAT
1 TTTTAAAATACTTTTTTTAAT
37323784 TTTCT-AAATA-TTTTTT
1 TTT-TAAAATACTTTTTT
37323800 GGTGTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 24 0.69
21 10 0.29
22 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTAAAATACTTTTTTTAAT
Found at i:37323832 original size:5 final size:5
Alignment explanation
Indices: 37323818--37323857 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
37323808 TTAAAAAAAT
* *
37323818 GGGCC GGGCC AGGCC GGGCC AGGCC GGGCC GGGCCC GGGC
1 GGGCC GGGCC GGGCC GGGCC GGGCC GGGCC GGG-CC GGGC
37323858 TTAGGAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.05, C:0.40, G:0.55, T:0.00
Consensus pattern (5 bp):
GGGCC
Found at i:37323834 original size:10 final size:10
Alignment explanation
Indices: 37323819--37323857 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
37323809 TAAAAAAATG
37323819 GGCCGGGCCA
1 GGCCGGGCCA
37323829 GGCCGGGCCA
1 GGCCGGGCCA
*
37323839 GGCCGGGCCG
1 GGCCGGGCCA
37323849 GGCCCGGGC
1 GG-CCGGGC
37323858 TTAGGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 21 0.78
11 6 0.22
ACGTcount: A:0.05, C:0.41, G:0.54, T:0.00
Consensus pattern (10 bp):
GGCCGGGCCA
Found at i:37324204 original size:18 final size:18
Alignment explanation
Indices: 37324150--37324207 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
37324140 GAATTTTAAA
*
37324150 AAATCTTTATATATTCTTT
1 AAATTTTTATATATT-TTT
* *
37324169 AGAATTTTT-TAGAATTTT
1 A-AATTTTTATATATTTTT
37324187 AAATTTTTATATATTTTT
1 AAATTTTTATATATTTTT
37324205 AAA
1 AAA
37324208 AATTATGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 7 0.22
18 14 0.44
19 5 0.16
20 6 0.19
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
AAATTTTTATATATTTTT
Found at i:37324211 original size:27 final size:25
Alignment explanation
Indices: 37324141--37324250 Score: 67
Period size: 27 Copynumber: 4.0 Consensus size: 25
37324131 GTTATTTTGG
*
37324141 AATTTTAAAAAATCTTTATATATTCTTTA
1 AATTTTTAAAAAT-TTTA-A-ATT-TTTA
* *
37324170 GAATTTTTTAGAATTTTAAATTTTTA
1 -AATTTTTAAAAATTTTAAATTTTTA
* **
37324196 TATATTTTTAAAAATTATGAAAATTTGGA
1 -A-ATTTTTAAAAATT-T-TAAATTTTTA
37324225 AATTTTTATAAATATTTTAAATTTTT
1 AATTTTTA-AAA-ATTTTAAATTTTT
37324251 GAAAATTATT
Statistics
Matches: 63, Mismatches: 12, Indels: 13
0.72 0.14 0.15
Matches are distributed among these distances:
26 5 0.08
27 27 0.43
28 7 0.11
29 14 0.22
30 10 0.16
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.54
Consensus pattern (25 bp):
AATTTTTAAAAATTTTAAATTTTTA
Found at i:37324256 original size:19 final size:20
Alignment explanation
Indices: 37324224--37324262 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
37324214 GAAAATTTGG
37324224 AAATTTTTATAAA-TATTTT
1 AAATTTTTATAAATTATTTT
37324243 AAATTTTTGA-AAATTATTTT
1 AAATTTTT-ATAAATTATTTT
37324263 GTAATTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
AAATTTTTATAAATTATTTT
Found at i:37324262 original size:20 final size:19
Alignment explanation
Indices: 37324182--37324250 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
37324172 ATTTTTTAGA
*
37324182 ATTTTAAATTTTTATATAT
1 ATTTTAAATTTTTATAAAT
**
37324201 -TTTTAAA-AATTATGAAA-
1 ATTTTAAATTTTTAT-AAAT
*
37324218 ATTTGGAAATTTTTATAAAT
1 ATTT-TAAATTTTTATAAAT
37324238 ATTTTAAATTTTT
1 ATTTTAAATTTTT
37324251 GAAAATTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
17 4 0.11
18 12 0.32
19 14 0.37
20 8 0.21
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
ATTTTAAATTTTTATAAAT
Found at i:37326505 original size:4 final size:4
Alignment explanation
Indices: 37326496--37326544 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
37326486 TTATTATATT
* * * * *
37326496 GATA GATA GATA CATA GATA CATA GATA CATA GATA CATA GGTA GATA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
37326544 G
1 G
37326545 TCATTAAAAC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.24
Consensus pattern (4 bp):
GATA
Found at i:37326507 original size:8 final size:8
Alignment explanation
Indices: 37326496--37326536 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
37326486 TTATTATATT
*
37326496 GATAGATA
1 GATACATA
37326504 GATACATA
1 GATACATA
37326512 GATACATA
1 GATACATA
37326520 GATACATA
1 GATACATA
37326528 GATACATA
1 GATACATA
37326536 G
1 G
37326537 GTAGATAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (8 bp):
GATACATA
Found at i:37328874 original size:50 final size:50
Alignment explanation
Indices: 37328750--37328998 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
37328740 GATAATAACA
* * ** * *
37328750 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
37328801 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
37328851 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
37328901 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
37328956 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
37328999 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:37328928 original size:100 final size:104
Alignment explanation
Indices: 37328749--37328998 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
37328739 TGATAATAAC
**
37328749 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
37328814 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
37328851 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
37328914 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
37328956 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37328999 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:37329114 original size:13 final size:13
Alignment explanation
Indices: 37329093--37329124 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37329083 GCTTGGATCA
*
37329093 TCATCAAATAAAT
1 TCATAAAATAAAT
37329106 TCATAAAATAAAT
1 TCATAAAATAAAT
37329119 TCATAA
1 TCATAA
37329125 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:37329371 original size:30 final size:30
Alignment explanation
Indices: 37329336--37329393 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37329326 CCTCGACTCT
*
37329336 AACTTTTTCAAAATTACAATTTTACCCCTA
1 AACTTTTACAAAATTACAATTTTACCCCTA
* * *
37329366 AACTTTTACATAATTACATTTTTTCCCC
1 AACTTTTACAAAATTACAATTTTACCCC
37329394 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTACCCCTA
Found at i:37334938 original size:18 final size:17
Alignment explanation
Indices: 37334912--37334950 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37334902 ATTTTCCTTC
37334912 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
37334929 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
37334947 CACA
1 CACA
37334951 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:37342047 original size:23 final size:23
Alignment explanation
Indices: 37341952--37342050 Score: 135
Period size: 23 Copynumber: 4.3 Consensus size: 23
37341942 ATAAGTGCCA
*
37341952 CACTGGTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
37341975 CATTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
37341998 CATTGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
37342021 CACTGAAATGTAGCCGAAGCTAA
1 CACTGATATGTAGCCGAAGCTAC
37342044 CACTGAT
1 CACTGAT
37342051 CAATAACACT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 66 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:37343548 original size:13 final size:14
Alignment explanation
Indices: 37343526--37343558 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
37343516 TGTTTGACAG
*
37343526 ATTTTCTAAAAA-T
1 ATTTTATAAAAACT
37343539 ATTTTATAAAAACT
1 ATTTTATAAAAACT
37343553 ATTTTA
1 ATTTTA
37343559 AATGGAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTATAAAAACT
Found at i:37348791 original size:156 final size:155
Alignment explanation
Indices: 37348610--37348922 Score: 574
Period size: 156 Copynumber: 2.0 Consensus size: 155
37348600 TTTAATTGTT
* *
37348610 AATATTTTTTATGGCTTTTTAGAAACTTTTAATTTATATATATTTGAATTTTTTTAGACTTATTA
1 AATATTTTTTATAGCTTTTTAGAAACTTCTAATTTATATATATTTGAATTTTTTTAGACTTATTA
37348675 AAATTTTATATATTTAAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTAC-AAAAAAAG
66 AAATTTTATATATTT-AAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAG
37348739 ACTAAACTATTTGAACAAAAATTCAA
130 ACTAAACTATTTGAACAAAAATTCAA
*
37348765 AATATTTTTTTATAGCTTTTTAGAAACTTCTAATTTATATATATTTGAATTTTTTTAGATTTATT
1 AATA-TTTTTTATAGCTTTTTAGAAACTTCTAATTTATATATATTTGAATTTTTTTAGACTTATT
37348830 AAAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAG
65 AAAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAG
37348895 ACTAAACTATTTGAACAAAAATTCAA
130 ACTAAACTATTTGAACAAAAATTCAA
37348921 AA
1 AA
37348923 AGCCAGTCGA
Statistics
Matches: 153, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
155 44 0.29
156 109 0.71
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.41
Consensus pattern (155 bp):
AATATTTTTTATAGCTTTTTAGAAACTTCTAATTTATATATATTTGAATTTTTTTAGACTTATTA
AAATTTTATATATTTAAAAAATTCAAATGTTGGTATGAAATGCCACATCATCTACAAAAAAAAGA
CTAAACTATTTGAACAAAAATTCAA
Found at i:37349062 original size:5 final size:5
Alignment explanation
Indices: 37349052--37349093 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
37349042 TTGGCTTCAA
37349052 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CAACC CA
1 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CAACC CA
37349094 GCTCAGCTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (5 bp):
CAACC
Found at i:37358737 original size:15 final size:15
Alignment explanation
Indices: 37358717--37358746 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37358707 TATGTTGAAA
37358717 TTTGATTTAATGATT
1 TTTGATTTAATGATT
37358732 TTTGATTTAATGATT
1 TTTGATTTAATGATT
37358747 GTTGTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTGATTTAATGATT
Found at i:37373906 original size:21 final size:21
Alignment explanation
Indices: 37373865--37373906 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37373855 CATAAAAACT
*
37373865 TCCAAAAAGTTTTCCACCATG
1 TCCAAAAAGTTTGCCACCATG
*
37373886 TCCAAAAA-TATTGCCATCATG
1 TCCAAAAAGT-TTGCCACCATG
37373907 CAACGTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (21 bp):
TCCAAAAAGTTTGCCACCATG
Found at i:37383186 original size:7 final size:7
Alignment explanation
Indices: 37383152--37383198 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
37383142 GTCATGTACC
37383152 TTTTATT
1 TTTTATT
*
37383159 CTTTATAT
1 TTTTAT-T
37383167 TTTT-TT
1 TTTTATT
*
37383173 GTTTATT
1 TTTTATT
37383180 TTTTATT
1 TTTTATT
37383187 TGTTTATT
1 T-TTTATT
37383195 TTTT
1 TTTT
37383199 TGTGTTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 4 0.12
7 18 0.55
8 11 0.33
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (7 bp):
TTTTATT
Found at i:37383188 original size:15 final size:14
Alignment explanation
Indices: 37383160--37383205 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
37383150 CCTTTTATTC
*
37383160 TTTATATTTTTTTG
1 TTTATTTTTTTTTG
37383174 TTTATTTTTTATTTG
1 TTTATTTTTT-TTTG
*
37383189 TTTATTTTTTTGTG
1 TTTATTTTTTTTTG
37383203 TTT
1 TTT
37383206 TCATTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 15 0.52
15 14 0.48
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTTTTG
Found at i:37383206 original size:25 final size:26
Alignment explanation
Indices: 37383164--37383224 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 26
37383154 TTATTCTTTA
* *
37383164 TATTTTTTTGTTTATTTTTTATTTGT-T
1 TATTTTTTTG-TTA-TTTTCATTTATAT
*
37383191 TATTTTTTTG-TGTTTTCATTTATAT
1 TATTTTTTTGTTATTTTCATTTATAT
37383216 TATTTTTTT
1 TATTTTTTT
37383225 ATCTTGCTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 9 0.30
25 11 0.37
27 10 0.33
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.79
Consensus pattern (26 bp):
TATTTTTTTGTTATTTTCATTTATAT
Found at i:37383348 original size:15 final size:15
Alignment explanation
Indices: 37383328--37383358 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37383318 TATGCCATTA
37383328 TTGTATTTATTATTG
1 TTGTATTTATTATTG
*
37383343 TTGTATTTGTTATTG
1 TTGTATTTATTATTG
37383358 T
1 T
37383359 GACATTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (15 bp):
TTGTATTTATTATTG
Found at i:37392010 original size:21 final size:19
Alignment explanation
Indices: 37391958--37392011 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
37391948 CATATCGTTA
37391958 TTTAAAATTATTATTAACATG
1 TTTAAAA-T-TTATTAACATG
* *
37391979 TTTAGAGTTTATTAACATTG
1 TTTAAAATTTATTAACA-TG
37391999 TTTTAAAATTTAT
1 -TTTAAAATTTAT
37392012 CCTTTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 9 0.33
20 3 0.11
21 15 0.56
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTAAAATTTATTAACATG
Found at i:37392540 original size:19 final size:16
Alignment explanation
Indices: 37392502--37392531 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37392492 ATGTTTCAAC
37392502 TTAA-AAATGTTGTTA
1 TTAATAAATGTTGTTA
37392517 TTAATAAATGTTGTT
1 TTAATAAATGTTGTT
37392532 GTATTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (16 bp):
TTAATAAATGTTGTTA
Found at i:37397264 original size:25 final size:26
Alignment explanation
Indices: 37397217--37397265 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
37397207 CAGAATTTGT
37397217 TTGTTCTTGTAATACTTTATTCTTCA
1 TTGTTCTTGTAATACTTTATTCTTCA
37397243 TTGTTCTTG-AATATCTTT-TTCTT
1 TTGTTCTTGTAATA-CTTTATTCTT
37397266 TTCAGGACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.16, C:0.14, G:0.08, T:0.61
Consensus pattern (26 bp):
TTGTTCTTGTAATACTTTATTCTTCA
Found at i:37398199 original size:44 final size:44
Alignment explanation
Indices: 37398134--37401660 Score: 2856
Period size: 44 Copynumber: 79.5 Consensus size: 44
37398124 AAAAAGCAGA
* * *
37398134 AGATATTGTCTTCATAAATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37398178 AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATTTA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGA--TAGC
* * * * * *
37398224 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAATAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* *
37398269 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
37398313 AGATCCTGTCTTCTTATATTGGTAG-GACGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37398356 AGATATTGTCTTCCCATACTGATGGC--GAAGTAGATTGAAGAAAGC
1 AGATCTTGTCTTCCTATA-T--TGGCGTGAAGTAGATCGAAGATAGC
* * *
37398401 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* *
37398445 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
37398489 AGATCTTGTCTTCCTATACTGGTG-GCAAAGTATATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGGCGTG--AAGTAGATCGAAGATAGC
* * *
37398534 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGA
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37398578 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GA
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37398621 AGATCTTTTCTTTCC-ATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTC-TTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* *
37398666 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37398710 AAATCTTGTCTTCATGA-ATTGGTGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCT-ATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37398754 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
37398798 AAATCTTGTCTT-CTCATATTGGCAGTGAAGTAGATCGTAGAAAGC
1 AGATCTTGTCTTCCT-ATATTGGC-GTGAAGTAGATCGAAGATAGC
* * *
37398843 AGATCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA-CGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
37398886 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * **
37398931 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGGTAAT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37398975 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAAATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * *
37399019 AGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
37399064 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* ** * * *
37399108 AGATATTGTCTTTATGTATTGGCGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37399152 AGATCCTGTTTTCCTATATTGGTAGTGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37399196 AGATCTTATCTTTCC-ATATTAGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTC-TTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* * * * * *
37399241 AAATCTTTTCTTCATGTATTAGCGTGAAGTAGATCGAAAATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
37399285 AGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * * *
37399328 AGACCTTGTCTTCCCATACTGGTGGTGAAGTAAATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37399373 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37399417 AGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* *** *
37399461 AGATCTTGTCTCCCTATATTGGTAACGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
37399505 AGATCTTGTCTTCCCATATTGGCGGTGAAGTAGATCTAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* * *
37399550 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAACATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* ** *
37399594 AGATCCTGTCTTTTTATATTGGTAG-GAAGT-GAATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAG-ATCGAAGATAGC
* * * * *
37399637 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37399682 AGATATTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37399726 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37399770 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAG--A-TAG--C
** * * *** ** * *
37399820 GAAGAAAGTAGATCTTGTCT-TCA-TGTATTGGCGT-GA-AGTAGATCGAAGATAGC
1 --AG-ATCTTG-TCTT-CCTAT-ATTGGCGTGAAGTAGATCGAAGAT---AG----C
* * * *
37399873 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
37399916 AGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * ** *
37399961 AGATCTTGTCTTCATGTATTGGTATGAAGTAGATCGAATATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
*
37400005 AGATAC-TGTCTTCCTATATT-G-GTAGCACAGTGGATCGAAGAT-GC
1 AGAT-CTTGTCTTCCTATATTGGCGT-G-A-AGTAGATCGAAGATAGC
* *
37400049 AGATCTTGTCTTCCTATATTGGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* * *
37400094 ATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37400138 AGATCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA-CGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
37400181 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37400226 AGATCTTGGCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37400270 AGATCTTGTCTTCATGTATTGGCGTGGAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * * *
37400314 AAATCCTATCATCCTATATTGGTAGTGAAGTGGATCGAAAAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37400358 AGATCTTATCTTCCCATATTGGCAGCGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* * * * * *
37400403 AAATCTTTTCTTCATGTATTGGCATGAAGTAGATCGAAAATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37400447 AGATCTTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
** * * * *
37400490 AGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37400535 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATATC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * *
37400579 AGATCTTGTCTTCATGTATTGACGTGAAATAGATCGAAGATGGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
37400623 AGATCCTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37400667 ATATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* * *
37400712 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAACATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * *
37400756 AGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATCGAAGATA-C
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37400799 AGATCTTGTCTTTCC-ATACTGGTGGTGAAGTAGATCGACGAAAGC
1 AGATCTTGTC-TTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37400844 AGATCTTGTCTTCATGTATTAGCGTAAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37400888 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * * *
37400932 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
37400977 AGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37401021 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
37401064 AAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37401109 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAATATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* ** * *
37401153 AGATCTTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAGAT-GT
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37401197 AGATCTTGTCTTCCCATATTGGCGGCGAAATAGATTGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGATAGC
* *
37401242 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-AATGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAA-GATAGC
* * * *
37401286 AGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA-CGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37401329 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * * *
37401374 AGATTTTGGCTTCATGTATTGGCGTGAAGTAGATCAAAGACAGT
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * *
37401418 AGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37401462 AGATCTTGTTTTCCCAT-TCTGGTGGCGAAGTAGATCGAAGAAAGC
1 AGATCTTGTCTTCCTATAT-TGG-CGTGAAGTAGATCGAAGATAGC
* * *
37401507 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * **
37401550 AGATATTGTCTT-CTCATACTGGTGGTGAAGTAGATCGAAGAAAAA
1 AGATCTTGTCTTCCT-ATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * *
37401595 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAAATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
*
37401639 AGAT-TATGTCTTCTTATATTGG
1 AGATCT-TGTCTTCCTATATTGG
37401661 TAGTGAGGCA
Statistics
Matches: 2775, Mismatches: 591, Indels: 234
0.77 0.16 0.06
Matches are distributed among these distances:
42 6 0.00
43 257 0.09
44 1753 0.63
45 652 0.23
46 46 0.02
47 5 0.00
48 7 0.00
49 11 0.00
50 5 0.00
51 12 0.00
52 4 0.00
53 8 0.00
54 7 0.00
55 2 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
Found at i:37398614 original size:265 final size:266
Alignment explanation
Indices: 37398134--37401660 Score: 3115
Period size: 265 Copynumber: 13.2 Consensus size: 266
37398124 AAAAAGCAGA
* ** * *
37398134 AGATATTGTCTTCATAAATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * * * *
37398199 GTAGCGAAGTGGATCGAAGATTTA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 G-CGTGAAGTAGATCGAAGA--TAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAA
* * * * * *
37398263 TAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCTT
128 GAAAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT
* * * * * * *
37398328 ATATTGGTAGGACGTGGATCGAAGATA-CAGATATTGTCTTCCCATACTGATGGCGAAGTAGATT
193 ATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
37398392 GAAGAAAGC
258 GAAGAAAGC
*
37398401 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * *
37398466 GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTGGTGGCAAAGTATATCGAAGAA
66 GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAA
* * * * * * *
37398531 AGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGAAGATCCTGTCTTCCTATA
131 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATA
* * * *
37398596 TTGGTAGGAAGTGGATCGAAGAT-GAAGATCTTTTCTTTCC-ATACTGGTGGCGAAGTAGATCGA
196 TTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTC-TTCCTATATTGGTGGCGAAGTAGATCGA
37398659 AGAAAGC
260 AGAAAGC
* *
37398666 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAAATCTTGTCTTCATGAATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * * * *
37398731 GTGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT
66 GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAA
* * *
37398796 A-CAAATCTTGTCTT-CTCATATTGGCAGTGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCCTA
131 AGCAGATCTTGTCTTCCT-ATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATA
* * * *
37398859 TATTGGTAGGAAGTGGATCGAAGA-CGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG
194 TATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCG
*
37398923 AAGAAAAC
259 AAGAAAGC
* * **
37398931 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGGTAATAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * * * *
37398996 GCGTGAAGTAGATCGAAAATAGTAGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAA
66 GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAA
* * * * * * *
37399061 AGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATATTGTCTTTATGTA
131 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATA
* * * * * *
37399126 TTGGCGT-GG-AGTAGATCGAAGATAGTAGATCCTGTTTTCCTATATTGGTAGTGAAGTGGATCG
196 TT-G-GTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCG
*
37399189 AAG-ATGC
259 AAGAAAGC
* * * * * *
37399196 AGATCTTATCTTTCCA--TATTAGCGGCGAAGTAGATCGAAGAAAGCAAATCTTTTCTTCATGTA
1 AGATCTTGTC-TT-CATGTATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTA
* * * * * * *
37399259 TTAGCGTGAAGTAGATCGAAAATAGCAGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATTGAA
63 TTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAA
* * * * * * * *
37399323 G-ATGCAGACCTTGTCTTCCCATACTGGTGGTGAAGTAAATCGAAGAAAGTAGATCTTATCTTCA
128 GAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA
* * * ** *
37399387 TGTATTAGCGT--GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATT-GACGTGAAGTAG
192 TATATT-G-GTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAG
* *
37399449 ATCGAAGATAGT
255 ATCGAAGAAAGC
* * * *** * ***
37399461 AGATCTTGTCTCCCTATATTGGTAACGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATT
1 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATT
* * * * * * *
37399525 GGCGGTGAAGTAGATCTAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAC
65 GGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAG
* * ** * * *
37399589 ATAGCAGATCCTGTCTTTTTATATTGGTAG-GAAGT-GAATCGAAG-ATGCAGATCTTGTCTTCC
129 AAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAG-ATCGAAGAAAGCAGATCTTGTCTTCA
* * * * * * * * * * *
37399651 CATACTGGTGGTGAAGTAGATCGAAGAAAGTAGATATTGTCTTCATGTATTAG-CGTGAAGTAGA
192 TATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGA
*
37399715 TCGAAGATAGC
256 TCGAAGAAAGC
*
37399726 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT--C--A-T-
* * * * * * * * *
37399791 GTGGCGAAGTAGATCGAAGAAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTG
60 GT-----A-TTG-GCG-TG-AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCG
* * * * * *
37399855 AAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGTAG
116 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGCAG
* ** * * * * * *
37399918 ATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG
180 ATCTTGTCTTCATATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG
** * *
37399983 T-ATGAAGTAGATCGAATATAGC
244 TGGCGAAGTAGATCGAAGAAAGC
* * * * *
37400005 AGATAC-TGTCTTCCTATATT-G-GTAGCACAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTAT
1 AGAT-CTTGTCTTCATGTATTGGCGT-G-A-AGTAGATCGAAGATAGCAGATCTTGTCTTCATGT
* * * * * * *
37400066 ATTGGCGGCGAAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
62 ATTGGC-GTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCG
* * * * *
37400130 AAGATAGCAGATCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ACGCAGATCTTGTCTT
126 AAGAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
** * * * * * * * * *
37400193 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGGCTTCATGTATTGG-CGTGAAGTA
190 CATATATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTA
* *
37400257 GATCAAAGATAGC
254 GATCGAAGAAAGC
* * * * * * * *
37400270 AGATCTTGTCTTCATGTATTGGCGTGGAGTAGATCGAAGATAGTAAATCCTATCATCCTATATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * * * * **
37400335 GTAGTGAAGTGGATCGAAAAT-GCAGATCTTATCTTCCCATATTGGCAGCGAAGTAGATCGAAGA
66 G-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA
* * * * * *
37400399 AAACAAATCTTTTCTTCATGTATTGGCATGAAGTAGATCGAA-AATAGCAGATCTTGTCTTTC-T
130 AAGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAA-AGCAGATCTTGTC-TTCAT
* * ** *
37400462 ATATTGGTAGGAAGTGGATTGAAGAT-GCAGATCTTGTCTTCCCGTACTGGTGGCGAAGTAGATC
193 ATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATC
37400526 GAAGAAAGC
258 GAAGAAAGC
* * *
37400535 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATATCAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
* * * * * * * *
37400600 ACGTGAAATAGATCGAAGATGGTAGATCCTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAG-A
66 GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAA
* * * * *
37400664 TGCATATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
131 AGCAGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATAT
* * * * * *
37400729 ATTGG-CGTGAAGTAGATCGAACATAGCAGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATCG
195 ATTGGTAG-GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCG
*
37400792 AAGATA-C
259 AAGAAAGC
* * * *
37400799 AGATCTTGTCTTTCCA--TACTGGTGGTGAAGTAGATCGACGAAAGCAGATCTTGTCTTCATGTA
1 AGATCTTGTC-TT-CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTA
* * * * * *
37400862 TTAGCGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAA
63 TTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAA
* * * * * * * *
37400926 GATAGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAAAGTAGATCTTGTCTTCA
128 GAAAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA
* * * *
37400991 TGTATTGGCGTA--AAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGG
192 TATATT-G-GTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAG
*
37401053 ATCGAAG-ATGC
255 ATCGAAGAAAGC
* *** * * * *
37401064 AAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATT
* * * * *
37401129 GGCATGAAGTAGATCGAATATAGCAGATCTTGTCTTCCTATATTGGTAGCAAAGTGGATCGAAG-
65 GGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA
* * * * * * *
37401193 ATGTAGATCTTGTCTTCCCATATTGGCGGCGAAATAGATTGAAGAAAGCAGATCTTGTCTTCATG
130 AAGCAGATCTTGTCTTCCTATATTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATA
* * * *
37401258 TATTGG-CGTGAAGTAGATC-AATGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGAT
194 TATTGGTAG-GAAGTAGATCGAA-GATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGAT
*
37401320 CGAAG-ACGC
257 CGAAGAAAGC
*** * * * * * *
37401329 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTGGCTTCATGTATT
1 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATT
* * * * *
37401394 GGCGTGAAGTAGATCAAAGACAGTAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-
65 GGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGA
* * * * *
37401458 ATGCAGATCTTGTTTTCCCAT-TCTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT
130 AAGCAGATCTTGTCTTCCTATAT-TGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCAT
* * * * * *
37401522 GTATTGGCATGAAGTAGATCGAAGAT-GCAGATATTGTCTT-CTCATACTGGTGGTGAAGTAGAT
193 ATATTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCT-ATATTGGTGGCGAAGTAGAT
**
37401585 CGAAGAAAAA
257 CGAAGAAAGC
* * * *
37401595 AGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAAATAGCAGAT-TATGTCTTCTTATATT
1 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCT-TGTCTTCATGTATT
37401659 GG
65 GG
37401661 TAGTGAGGCA
Statistics
Matches: 2763, Mismatches: 402, Indels: 192
0.82 0.12 0.06
Matches are distributed among these distances:
262 2 0.00
263 7 0.00
264 260 0.09
265 1923 0.70
266 256 0.09
267 75 0.03
268 1 0.00
271 1 0.00
273 1 0.00
274 1 0.00
276 1 0.00
277 6 0.00
278 4 0.00
279 210 0.08
280 15 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (266 bp):
AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
GCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAAGAA
AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATA
TTGGTAGGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGAA
GAAAGC
Found at i:37398739 original size:309 final size:310
Alignment explanation
Indices: 37398134--37401666 Score: 3039
Period size: 309 Copynumber: 11.4 Consensus size: 310
37398124 AAAAAGCAGA
* *
37398134 AGATATTGTCTTCATAAATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
** * * * * * *
37398199 GTAGCGAAGTGGATCGAAGATTTA-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 GCGGCGAAGTAGATCGAAGA--AAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAA
* * * * * *
37398263 TAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCT
129 GATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGA-AGCAGATCTTGTCTTC-
* * * * * * *
37398327 TATATTGGTAG-GACGTGGATCGAAGATA-CAGATATTGTCTTCCCATACTGA-TGGC--GAAGT
192 CATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CAT-GT-ATTGGCGTGAAGT
* * *
37398387 AGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
253 AGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* *
37398445 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * *
37398510 GTGGCAAAGTATATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGA
66 GCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGA
* * * * * *
37398574 TAGAAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGAAGATCTTTTCTTTCCAT
131 TAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAAGCAGATCTTGTC-TTCCAT
*
37398638 ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
195 ATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
* * *
37398703 AGATAGCAAATCTTGTCTTCATGAATTGGTGTGAAGTAGATCGAAGATAGC
260 AGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * *
37398754 AGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATA-CAAATCTTGTCTT-CTCATAT
1 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCT-ATAT
* * * * *
37398817 TGGCAGTGAAGTAGATCGTAGAAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGAA
64 TGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAA
* * * * * *
37398881 GA-CGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTT-C
129 GATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAG-AAGCAGATCTTGTCTTCC
* * * * *
37398944 ATGTATTAG-CGTGAAGTAGATCGAAGGTAA-TAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
193 A--TATTGGTGGCGAAGTAGATCGAA-GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
* * * *** * * * *
37399007 ATCGAAAATAGTAGATCTTGTTTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGC
255 ATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
* * * ** *
37399064 AGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATATTGTCTTTATGTATTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * *
37399129 GCGTG-G-AGTAGATCGAAGATAGTAGATCCTGTTTTCCTATATTGGTAGTGAAGTGGATCGAAG
66 GCG-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAG
* * ** * * *
37399192 AT-GCAGATCTTATCTTTCC-ATATTAGCGGCGAAGTAGATCGAAGAAAGCAAATCTTTTCTT-C
130 ATAGCAGATCTTGTC-TTCCTATATTGGTAGTGAAGTAGATCGAAG-AAGCAGATCTTGTCTTCC
* * * * * *
37399254 ATGTATTAG-CGTGAAGTAGATCGAA-AATAGCAGATCCTGTCTTTC-TATATTGGTAG-GAAGT
193 A--TATTGGTGGCGAAGTAGATCGAAGAA-AGCAGATCTTGTC-TTCATGTATTGG-CGTGAAGT
* * * *** * * * * *
37399315 GGATTGAAGAT-GCAGACCTTGTCTTCCCATACTGGTGGTGAAGTAAATCGAAGAAAGT
253 AGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37399373 AGATCTTATCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * * *** *
37399438 AC-GTGAAGTAGATCGAAGATAGTAGATCTTGTCTCCCTATATTGGTAACGAAGTGGATCGAAGA
66 GCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGA
* ** *
37399502 T-GCAGATCTTGTCTTCCCATATTGGCGGTGAAGTAGATCTAAGAAAGCAGATCTTGTCTT-CAT
131 TAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAG-AAGCAGATCTTGTCTTCCA-
* * * * * ** * *
37399565 GTATTGG-CGTGAAGTAGATCGAACATAGCAGATCCTGTCTTTTTATATTGGTAG-GAAGT-GAA
194 -TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAG-A
*** * * * *
37399627 TCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGT
256 TCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
37399682 AGATATTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
* * * * *
37399747 GC-GTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATA-T--T------G--G-TCG-TG-
* * * * *
37399811 AAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAG
117 AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGA-AGCAG
* * * * * * *** *
37399875 ATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGTAGATATTGTCTTCCCATACTGG
181 ATCTTGTCTTCC-ATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
* * * ** *
37399938 TGGTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGTATGAAGTAGATCGAATATA
245 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
37400003 GC
309 GC
* *
37400005 AGATAC-TGTCTTCCTATATT-G-GTAGCACAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTAT
1 AGAT-CTTGTCTTCATATATTGGCGT-G-A-AGTAGATCGAAGATAGCAGATCTTGTCTTCCTAT
* * *
37400066 ATTGGCGGCGAAGTAGATCGAAGAAAGCATATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
62 ATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCG
* * *
37400130 AAGATAGCAGATCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGACGCAGATCTTGTCTTC
127 AAGATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAAGCAGATCTTGTCTT-
* * *
37400194 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGGCTTCATGTATTGGCGTGAAGTAGA
191 CCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
* * *
37400259 TCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGGAGTAGATCGAAGATAGT
256 TCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * * * * * *
37400314 AAATCCTATCATCCTATATTGGTAGTGAAGTGGATCGAAAAT-GCAGATCTTATCTTCCCATATT
1 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
* * * * * * * *
37400378 GGCAGCGAAGTAGATCGAAGAAAACAAATCTTTTCTTCATGTATTGG-CATGAAGTAGATCGAAA
65 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAG
* * * * *
37400442 ATAGCAGATCTTGTCTTTCTATATTGGTAG-GAAGTGGATTGAAGATGCAGATCTTGTCTTCCCG
130 ATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAAGCAGATCTTGTCTT-CCA
* * *
37400506 TACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTAGCGTGAAGTAGATCG
194 TATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCG
* * * * *
37400571 AAGATATCAGATCTTGTCTTCATGTATTGACGTGAAATAGATCGAAGATGGT
259 AAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * * * * * *
37400623 AGATCCTGTCTCCCTATATTGGTAGCGAAGTGGATCGAAGAT-GCATATCTTGTCTTCCCATATT
1 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
* * *
37400687 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAC
65 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAG
* * *
37400751 ATAGCAGATCCTGTCTTTCTATATTGGTAG-GAAGTGGATCGAAGATA-CAGATCTTGTCTTTCC
130 ATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGA-AGCAGATCTTGTC-TTCC
* * * * *
37400814 ATACTGGTGGTGAAGTAGATCGACGAAAGCAGATCTTGTCTTCATGTATTAGCGTAAAGTAGATC
193 ATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
*
37400879 GAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGT
258 GAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
** * * * * * * * *
37400932 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAAAGTAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT
** * * * *
37400997 GGC-GTAAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG
65 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAG
* * * * *
37401060 AT-GCAAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGTAGATCTTGTCTT-CA
130 ATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAG-AAGCAGATCTTGTCTTCCA
* * * * * * ** *
37401123 TGTAT--TGGCATGAAGTAGATCGAATATAGCAGATCTTGTCTTCCTATATTGGTAGCAAAGTGG
194 TAT-TGGTGGC--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAG
* *** * * * *
37401186 ATCGAAGAT-GTAGATCTTGTCTTCCCATATTGGCGGCGAAATAGATTGAAGAAAGC
255 ATCGAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGC
* *
37401242 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-AATGATAGCAGATCCTGTCTTCCTATATT
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAA-GATAGCAGATCTTGTCTTCCTATATT
** * * * * * *
37401306 GGTAG-GAAGTGGATCGAAG-ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
65 GGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAG
* * * * * * * *
37401369 AAAGCAGATTTTGGCTTCATGTATTGG-CGTGAAGTAGATCAAAGACAGTAGATCTTGTCTTCCT
130 ATAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGA-AGCAGATCTTGTCTTCC-
* * * * *
37401433 ATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTTTTCCCAT-TCTGGTGGC--GAAGTA
193 ATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CATGTAT--TGGCGTGAAGTA
* *
37401494 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAT-GC
254 GATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
* * * * ** * *
37401550 AGATATTGTCTTC-TCATACTGGTGGTGAAGTAGATCGAAGAAAAAAGATCTTGTCTTCATGTAT
1 AGATCTTGTCTTCAT-ATATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATAT
* * * *
37401614 TAGC-GTGAAGTAGATCGAA-AATAGCAGAT-TATGTCTTCTTATATTGGTAGTGA
64 TGGCGGCGAAGTAGATCGAAGAA-AGCAGATCT-TGTCTTCCTATATTGGTCGTGA
37401667 GGCAGACTGA
Statistics
Matches: 2710, Mismatches: 411, Indels: 203
0.82 0.12 0.06
Matches are distributed among these distances:
306 1 0.00
307 10 0.00
308 147 0.05
309 1769 0.65
310 429 0.16
311 95 0.04
312 9 0.00
313 1 0.00
315 1 0.00
318 1 0.00
320 1 0.00
321 4 0.00
322 23 0.01
323 131 0.05
324 87 0.03
325 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (310 bp):
AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG
GCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGA
TAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGAAGCAGATCTTGTCTTCCATA
TTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA
GATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
Found at i:37399816 original size:14 final size:14
Alignment explanation
Indices: 37399797--37399833 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
37399787 ACTGGTGGCG
37399797 AAGTAGATCGAAGA
1 AAGTAGATCGAAGA
37399811 AAGTAGATCGAAGA
1 AAGTAGATCGAAGA
37399825 AAGTAGATC
1 AAGTAGATC
37399834 TTGTCTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.08, G:0.27, T:0.16
Consensus pattern (14 bp):
AAGTAGATCGAAGA
Found at i:37401822 original size:44 final size:43
Alignment explanation
Indices: 37401727--37401844 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 43
37401717 TCGCATCTAG
* * *
37401727 TCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATC-TCCTGAAGTAGCAGTGGAGCAGATTAAAACCGATAA
* * ** *
37401771 TCCTATCTCCCTGAAGTAGCAGTGGAGCGGATTAAAACCTTTGA
1 TCTTATCT-CCTGAAGTAGCAGTGGAGCAGATTAAAACCGATAA
* * *
37401815 TCTTATCTTCTGAAGTCGCAG-AGAGCAGAT
1 TCTTATCTCCTGAAGTAGCAGTGGAGCAGAT
37401845 CGCATCAAGC
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 7 0.12
43 12 0.20
44 41 0.68
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
TCTTATCTCCTGAAGTAGCAGTGGAGCAGATTAAAACCGATAA
Found at i:37403873 original size:20 final size:19
Alignment explanation
Indices: 37403848--37403893 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
37403838 TCATGTAACT
*
37403848 TTTATTCTTTATATTT-TTTG
1 TTTATT-TTT-TATTTGTTTA
37403868 TTTATTTTTTATTTGTTTA
1 TTTATTTTTTATTTGTTTA
37403887 TTTATTT
1 TTTATTT
37403894 GTGTTTTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 13 0.54
20 6 0.25
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.78
Consensus pattern (19 bp):
TTTATTTTTTATTTGTTTA
Found at i:37403996 original size:17 final size:18
Alignment explanation
Indices: 37403957--37404001 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
37403947 TGTCATGGAC
37403957 TTTATTT-TTTCCTTATA
1 TTTATTTGTTTCCTTATA
* *
37403974 TATATTTGTTTCGTT-TA
1 TTTATTTGTTTCCTTATA
37403991 TTTATTTGTTT
1 TTTATTTGTTT
37404002 ATATTATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.71
Consensus pattern (18 bp):
TTTATTTGTTTCCTTATA
Found at i:37404042 original size:15 final size:15
Alignment explanation
Indices: 37404022--37404052 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37404012 TATGCCATTA
37404022 TTGTATTTATTATTG
1 TTGTATTTATTATTG
*
37404037 TTGTATTTGTTATTG
1 TTGTATTTATTATTG
37404052 T
1 T
37404053 GACATTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (15 bp):
TTGTATTTATTATTG
Found at i:37410184 original size:20 final size:20
Alignment explanation
Indices: 37410145--37410185 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37410135 TACAATTAAT
*
37410145 ATATATAAAAAATTATAAAA
1 ATATATAAAAAATTAAAAAA
**
37410165 ATATATAAAATTTTAAAAAA
1 ATATATAAAAAATTAAAAAA
37410185 A
1 A
37410186 ACACATTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATATAAAAAATTAAAAAA
Found at i:37410322 original size:19 final size:20
Alignment explanation
Indices: 37410300--37410337 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37410290 ATTTTAATAA
37410300 TTTATATA-TTTTAAATTTT
1 TTTATATATTTTTAAATTTT
*
37410319 TTTATGTATTTTTAAATTT
1 TTTATATATTTTTAAATTT
37410338 CAAAATAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTATATATTTTTAAATTTT
Found at i:37410710 original size:40 final size:40
Alignment explanation
Indices: 37410664--37410810 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
37410654 CAAAAACGTT
37410664 GCTAAAGAGTGAGCATTAGCGGCGTTTAAGGAAAAGCGCC
1 GCTAAAGAGTGAGCATTAGCGGCGTTTAAGGAAAAGCGCC
* *
37410704 GCTAAAGAGTGAGCATTAGTGGCGTTTAAGGAAAAGTGCC
1 GCTAAAGAGTGAGCATTAGCGGCGTTTAAGGAAAAGCGCC
*
37410744 GCTAAAGAGTGAGCATTAGTGGCGTTTAAGGAAAAGCGCC
1 GCTAAAGAGTGAGCATTAGCGGCGTTTAAGGAAAAGCGCC
* * *
37410784 GCTAAAGAGTGAACATTGGCAGCGTTT
1 GCTAAAGAGTGAGCATTAGCGGCGTTT
37410811 GTAAAAAACG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (40 bp):
GCTAAAGAGTGAGCATTAGCGGCGTTTAAGGAAAAGCGCC
Found at i:37410960 original size:112 final size:112
Alignment explanation
Indices: 37410758--37411236 Score: 814
Period size: 112 Copynumber: 4.3 Consensus size: 112
37410748 AAGAGTGAGC
*** * * *
37410758 ATTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAACATTGGCAGCGTTTGTAAAAAACGCC
1 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
*
37410823 GCAAATAATACACCCATACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
* *
37410870 ATTAGTGGCGTTTTTTGTAAAGCGCCGGTAAAGAGTGAACATTAGCAGCGTTTGTAAAAAACGCC
1 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
**
37410935 GCAAATAATACACCCAGACAATGCCGTTTTGTGGCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
* **
37410982 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGCGTGAACATTAGCAGCGTTTATAAAAAACATC
1 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
37411047 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
37411094 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
1 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
* *
37411159 GCAAATAATACACCCAGACGGTGCCGTTTTTTGTCCTTTGGGGGGGA
66 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
37411206 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
37411237 TCTAGGTGTT
Statistics
Matches: 346, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 346 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (112 bp):
ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGTTTATAAAAAACGCC
GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGA
Found at i:37413320 original size:84 final size:87
Alignment explanation
Indices: 37413155--37413348 Score: 313
Period size: 84 Copynumber: 2.2 Consensus size: 87
37413145 GAAGCAGTCC
* *
37413155 TGGCGTTTTTAGGAAAACGCCACAAATAATGCAATTATTCCAGACCACGCAAAACGGTGTCTTTT
1 TGGCATTTTTAGGAAAACGCCACAAATAATGCAA-TATTCCAGACCACGCAAAACGGTGTCATTT
37413220 CTGTTCACAGCTGTAATATTTAG
65 CTGTTCACAGCTGTAATATTTAG
37413243 TGGCATTTTTAGGAAAACGCCACAAATAATGC-A-ATTCCAGACCACG-AAAACGGTGTCATTTC
1 TGGCATTTTTAGGAAAACGCCACAAATAATGCAATATTCCAGACCACGCAAAACGGTGTCATTTC
37413305 TGTTCACAGCTGTAATATTTAG
66 TGTTCACAGCTGTAATATTTAG
**
37413327 TGGTGTTTTTTAGGAAAACGCC
1 TGG-CATTTTTAGGAAAACGCC
37413349 GGAAATGTGG
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
84 40 0.40
85 29 0.29
87 1 0.01
88 31 0.31
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (87 bp):
TGGCATTTTTAGGAAAACGCCACAAATAATGCAATATTCCAGACCACGCAAAACGGTGTCATTTC
TGTTCACAGCTGTAATATTTAG
Found at i:37415468 original size:40 final size:40
Alignment explanation
Indices: 37415412--37415695 Score: 370
Period size: 40 Copynumber: 6.7 Consensus size: 40
37415402 AATACATTAC
*
37415412 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
37415452 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
37415492 TTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATTAAATTTA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT--TA-AA--T--TT------A
*
37415549 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTG
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
* *
37415589 TTACTAAAATAAATTACTTATTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
37415629 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
37415669 TTACTAAAATACATTACTTACTAAAAT
1 TTACTAAAATACATTACTTACTAAAAT
37415696 AAATTACTTA
Statistics
Matches: 218, Mismatches: 9, Indels: 34
0.84 0.03 0.13
Matches are distributed among these distances:
40 168 0.77
43 2 0.01
44 2 0.01
46 4 0.02
47 2 0.01
48 1 0.00
49 1 0.00
50 2 0.01
51 4 0.02
53 2 0.01
54 2 0.01
57 28 0.13
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (40 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
Found at i:37415513 original size:57 final size:57
Alignment explanation
Indices: 37415452--37415881 Score: 495
Period size: 57 Copynumber: 7.5 Consensus size: 57
37415442 TTTAAATTTA
* *
37415452 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTAC
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
*
37415509 TTACTAAAATAAATTACTTACTACAATTTGATTAAATTTATTACTAAAATACATTAC
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
** * *
37415566 TTACTAAAATTTGTTTAAATTTGTTACTAAAATAAATTACTTATTAAAATTTGTT--T-AAAT--
1 TTACTAAAA------TAAATTACTTACT---A-AAATT--TGATT-AAATTTATTACTAAAATAC
37415626 -TTA-
53 ATTAC
* *
37415629 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTAC
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
*
37415686 TTACTAAAATAAATTACTTACTACAATTTGATTAAATTTATTACTAAAATACATTAC
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
* * *
37415743 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTGTTACTAAAATACATTAC
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
* * * *
37415800 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTTAAAT--A-T-G
1 TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
* *
37415853 TTACTTAAATACATTACTTACTAAAATTT
1 TTACTAAAATAAATTACTTACTAAAATTT
37415882 AAGTATATAT
Statistics
Matches: 328, Mismatches: 25, Indels: 44
0.83 0.06 0.11
Matches are distributed among these distances:
50 8 0.02
51 3 0.01
52 1 0.00
53 37 0.11
54 2 0.01
55 1 0.00
56 3 0.01
57 228 0.70
63 20 0.06
64 3 0.01
66 1 0.00
67 8 0.02
68 1 0.00
69 4 0.01
70 8 0.02
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (57 bp):
TTACTAAAATAAATTACTTACTAAAATTTGATTAAATTTATTACTAAAATACATTAC
Found at i:37415513 original size:97 final size:97
Alignment explanation
Indices: 37415386--37415859 Score: 436
Period size: 97 Copynumber: 4.9 Consensus size: 97
37415376 CGATTGAATG
*
37415386 TTAATTTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTT
37415451 ATTACTAAAATACATTACTTACTAAAATTTGT
66 ATTACTAAAATACATTACTTACTAAAATTTGT
* *
37415483 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATTAAATTT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTT
37415548 ATTACTAAAATACATTACTTACTAAAATTTGT
66 ATTACTAAAATACATTACTTACTAAAATTTGT
* * *
37415580 TTAAATTTGTTACTAAAATAAATTACTTATTAAAATTTGTTTAAATTTA-TTACTAAAATACATT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAA------TAAA-TTACTTACTAAAAT---TT
* *
37415644 ACTTACTAAAATTTGTT--T-AAAT---TTA-TTACTAAAA-----
56 -GTT--T-AAATTTATTACTAAAATACATTACTTACTAAAATTTGT
* *
37415678 -TACA-TTACTTACTAAAATAAATTACTTACTACAATTTGATTAAATTTA-TTACTAAAA-----
1 TTAAATTTA-TTACTAAAATACATTACTTACTA-AA----A-TAAA-TTACTTACTAAAATTTGT
*
37415735 -TACA-TTACTTACTAAAATACATTACTTACTAAAATTTGT
58 TTAAATTTA-TTACTAAAATACATTACTTACTAAAATTTGT
* *
37415774 TTAAATTTGTTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTT
* **
37415839 ATTACTTAAATATGTTACTTA
66 ATTACTAAAATACATTACTTA
37415860 AATACATTAC
Statistics
Matches: 311, Mismatches: 23, Indels: 86
0.74 0.05 0.20
Matches are distributed among these distances:
83 2 0.01
84 4 0.01
85 1 0.00
86 1 0.00
87 4 0.01
90 6 0.02
91 21 0.07
92 1 0.00
96 4 0.01
97 214 0.69
98 7 0.02
102 1 0.00
103 22 0.07
104 6 0.02
106 2 0.01
107 5 0.02
108 1 0.00
109 1 0.00
110 8 0.03
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.44
Consensus pattern (97 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTT
ATTACTAAAATACATTACTTACTAAAATTTGT
Found at i:37415635 original size:177 final size:177
Alignment explanation
Indices: 37415412--37415752 Score: 673
Period size: 177 Copynumber: 1.9 Consensus size: 177
37415402 AATACATTAC
37415412 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAA
1 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAA
37415477 ATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATT
66 ATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATT
37415542 AAATTTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTG
131 AAATTTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTG
*
37415589 TTACTAAAATAAATTACTTATTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAA
1 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAA
37415654 ATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATT
66 ATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATT
37415719 AAATTTATTACTAAAATACATTACTTACTAAAAT
131 AAATTTATTACTAAAATACATTACTTACTAAAAT
37415753 ACATTACTTA
Statistics
Matches: 163, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 163 1.00
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.43
Consensus pattern (177 bp):
TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAA
ATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTACAATTTGATT
AAATTTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTG
Found at i:37415849 original size:13 final size:13
Alignment explanation
Indices: 37415831--37415872 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
37415821 TAAAATTTGT
*
37415831 TTAAATTTATTAC
1 TTAAATATATTAC
*
37415844 TTAAATATGTTAC
1 TTAAATATATTAC
*
37415857 TTAAATACATTAC
1 TTAAATATATTAC
37415870 TTA
1 TTA
37415873 CTAAAATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (13 bp):
TTAAATATATTAC
Found at i:37416343 original size:9 final size:9
Alignment explanation
Indices: 37416303--37416686 Score: 83
Period size: 7 Copynumber: 45.0 Consensus size: 9
37416293 TTTAATAACA
*
37416303 ATAACCTAC
1 ATAACTTAC
*
37416312 ATAACCTAC
1 ATAACTTAC
37416321 ATAA--TAC
1 ATAACTTAC
*
37416328 ATTTAACTTAT
1 A--TAACTTAC
37416339 ATAACTTAC
1 ATAACTTAC
37416348 ATAA--TAC
1 ATAACTTAC
37416355 ATTTAACTTAC
1 A--TAACTTAC
37416366 --AACTTAC
1 ATAACTTAC
*
37416373 ATAATACATA-
1 AT-A-ACTTAC
37416383 ATAACTTAC
1 ATAACTTAC
37416392 --AACTTAC
1 ATAACTTAC
*
37416399 ACAA--TAC
1 ATAACTTAC
37416406 ATTGAACTTAC
1 A-T-AACTTAC
37416417 --AACTTAC
1 ATAACTTAC
*
37416424 ATAATACATA-
1 AT-A-ACTTAC
37416434 ATAACTTAC
1 ATAACTTAC
37416443 --AACTTAC
1 ATAACTTAC
37416450 ATAA--TAC
1 ATAACTTAC
37416457 ATTTAACTTAC
1 A--TAACTTAC
37416468 --AACTTAC
1 ATAACTTAC
37416475 --AACTTAC
1 ATAACTTAC
37416482 ATAA--TAC
1 ATAACTTAC
37416489 ATTTAACTTAC
1 A--TAACTTAC
37416500 --AACTTAC
1 ATAACTTAC
*
37416507 ATAATACATA-
1 AT-A-ACTTAC
37416517 ATAACTTAC
1 ATAACTTAC
37416526 --AACTTAC
1 ATAACTTAC
*
37416533 ACAA--TAC
1 ATAACTTAC
37416540 ATTTAACTTAC
1 A--TAACTTAC
37416551 --AACTTAC
1 ATAACTTAC
*
37416558 ATAATACATA-
1 AT-A-ACTTAC
37416568 ATAACTTAC
1 ATAACTTAC
37416577 --AACTTAC
1 ATAACTTAC
37416584 ATAA--TAC
1 ATAACTTAC
37416591 ATTTAACTTAC
1 A--TAACTTAC
37416602 --AACTTAC
1 ATAACTTAC
*
37416609 ATAATACATA-
1 AT-A-ACTTAC
37416619 ATAACTTAC
1 ATAACTTAC
37416628 --AACTTAC
1 ATAACTTAC
37416635 ATAA--TAC
1 ATAACTTAC
37416642 ATTTAACTTAC
1 A--TAACTTAC
37416653 --AACTTAC
1 ATAACTTAC
37416660 ATAA--TAC
1 ATAACTTAC
37416667 ATTTAACTTAC
1 A--TAACTTAC
37416678 ATAACTTAC
1 ATAACTTAC
37416687 CATTGTAATT
Statistics
Matches: 286, Mismatches: 14, Indels: 150
0.64 0.03 0.33
Matches are distributed among these distances:
7 127 0.44
8 20 0.07
9 76 0.27
10 15 0.05
11 48 0.17
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:37416405 original size:51 final size:50
Alignment explanation
Indices: 37416318--37416678 Score: 515
Period size: 51 Copynumber: 6.9 Consensus size: 50
37416308 CTACATAACC
*
37416318 TACATAATACATTTAACTTATATAACTTACATAATACATTTAACTTACAACT
1 TACATAATACATTTAAC-T-TACAACTTACATAATACATTTAACTTACAACT
* * *
37416370 TACATAATACATAATAACTTACAACTTACACAATACATTGAACTTACAACT
1 TACATAATACAT-TTAACTTACAACTTACATAATACATTTAACTTACAACT
*
37416421 TACATAATACATAATAACTTACAACTTACATAATACATTTAACTTACAACTTACAACT
1 TACATAATACAT-TTAACTTACAACTTACATAATACA--T---TT--AACTTACAACT
*
37416479 TACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACT
1 TACATAATACATTTAACTTACAACTTACATAATACAT-TTAACTTACAACT
* *
37416530 TACACAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACT
1 TACATAATACATTTAACTTACAACTTACATAATACAT-TTAACTTACAACT
*
37416581 TACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACT
1 TACATAATACATTTAACTTACAACTTACATAATACAT-TTAACTTACAACT
37416632 TACATAATACATTTAACTTACAACTTACATAATACATTTAACTTACA
1 TACATAATACATTTAACTTACAACTTACATAATACATTTAACTTACA
37416679 TAACTTACCA
Statistics
Matches: 289, Mismatches: 12, Indels: 18
0.91 0.04 0.06
Matches are distributed among these distances:
50 9 0.03
51 213 0.74
52 13 0.04
53 6 0.02
55 1 0.00
56 1 0.00
57 23 0.08
58 23 0.08
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (50 bp):
TACATAATACATTTAACTTACAACTTACATAATACATTTAACTTACAACT
Found at i:37416477 original size:32 final size:32
Alignment explanation
Indices: 37416410--37416507 Score: 154
Period size: 32 Copynumber: 3.2 Consensus size: 32
37416400 CAATACATTG
37416410 AACTTACAACTTACATAATACA--TAA--T--
1 AACTTACAACTTACATAATACATTTAACTTAC
37416436 AACTTACAACTTACATAATACATTTAACTTAC
1 AACTTACAACTTACATAATACATTTAACTTAC
37416468 AACTTACAACTTACATAATACATTTAACTTAC
1 AACTTACAACTTACATAATACATTTAACTTAC
37416500 AACTTACA
1 AACTTACA
37416508 TAATACATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.33
28 3 0.05
30 1 0.02
32 40 0.61
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (32 bp):
AACTTACAACTTACATAATACATTTAACTTAC
Found at i:37416553 original size:134 final size:134
Alignment explanation
Indices: 37416318--37416678 Score: 586
Period size: 134 Copynumber: 2.8 Consensus size: 134
37416308 CTACATAACC
*
37416318 TACATAATACATTTAACTT---A--TATAACTTACATAATACATTTAACTTACAACTTACATAAT
1 TACATAATACATTTAACTTACAACTTACAACTTACATAATACATTTAACTTACAACTTACATAAT
*
37416378 ACATAATAACTTACAACTTACACAATACATTGAACTTACAACTTACATAATACATAATAACTTAC
66 ACATAATAACTTACAACTTACACAATACATTTAACTTACAACTTACATAATACATAATAACTTAC
37416443 AACT
131 AACT
37416447 TACATAATACATTTAACTTACAACTTACAACTTACATAATACATTTAACTTACAACTTACATAAT
1 TACATAATACATTTAACTTACAACTTACAACTTACATAATACATTTAACTTACAACTTACATAAT
37416512 ACATAATAACTTACAACTTACACAATACATTTAACTTACAACTTACATAATACATAATAACTTAC
66 ACATAATAACTTACAACTTACACAATACATTTAACTTACAACTTACATAATACATAATAACTTAC
37416577 AACT
131 AACT
37416581 TACATAATACATTTAACTTACAACTTAC-A--TA-ATACATA-A--TAACTTACAACTTACATAA
1 TACATAATACATTTAACTTACAACTTACAACTTACATA-ATACATTTAACTTACAACTTACATAA
* *
37416639 TACAT-TTAACTTACAACTTACATAATACATTTAACTTACA
65 TACATAATAACTTACAACTTACACAATACATTTAACTTACA
37416679 TAACTTACCA
Statistics
Matches: 222, Mismatches: 4, Indels: 14
0.93 0.02 0.06
Matches are distributed among these distances:
127 33 0.15
128 24 0.11
129 19 0.09
130 4 0.02
131 5 0.02
132 1 0.00
133 1 0.00
134 135 0.61
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (134 bp):
TACATAATACATTTAACTTACAACTTACAACTTACATAATACATTTAACTTACAACTTACATAAT
ACATAATAACTTACAACTTACACAATACATTTAACTTACAACTTACATAATACATAATAACTTAC
AACT
Found at i:37422693 original size:21 final size:21
Alignment explanation
Indices: 37422667--37422737 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
37422657 CTACAACTTA
* *
37422667 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
37422688 AAGCAGCA-GCTGCAGCGAGGG
1 AAGCAG-AGGCTGCAGCGAGGG
* *
37422709 AAGCGGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
37422730 AAGCAGAG
1 AAGCAGAG
37422738 CAGAGCAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
20 1 0.02
21 41 0.95
22 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.46, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:37422980 original size:14 final size:14
Alignment explanation
Indices: 37422961--37422994 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
37422951 ATTGCTATTG
37422961 GTTGCTTTTGAATT
1 GTTGCTTTTGAATT
37422975 GTTGCTTTTGAATT
1 GTTGCTTTTGAATT
*
37422989 TTTGCT
1 GTTGCT
37422995 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.21, T:0.59
Consensus pattern (14 bp):
GTTGCTTTTGAATT
Done.