Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 116 of 222
Found at i:37423158 original size:42 final size:42
Alignment explanation
Indices: 37423062--37423224 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
37423052 TTTTGTATAA
* * * ****
37423062 AAGCGCCACTAAAGAACATGTTCTTTCGCGGCGTTTGTAAAA
1 AAGCGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
** *
37423104 AAATGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
* *
37423146 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCG-TTTTTTCT
1 AAGCGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
* *
37423187 AAGCGCCGCTAAAGAACATGGTATTTAGCGGCGTTTTT
1 AAGCGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTT
37423225 GTTTGTAAAC
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 39 0.37
42 66 0.63
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
AAGCGCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
Found at i:37430196 original size:18 final size:17
Alignment explanation
Indices: 37430170--37430205 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37430160 TTTGGTTATA
37430170 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
37430188 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
37430205 T
1 T
37430206 CATTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:37430761 original size:11 final size:11
Alignment explanation
Indices: 37430745--37430770 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37430735 CATTCTTTTC
37430745 TTTTATTTCTT
1 TTTTATTTCTT
37430756 TTTTATTTCTT
1 TTTTATTTCTT
37430767 TTTT
1 TTTT
37430771 GGGTGATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTTCTT
Found at i:37432000 original size:18 final size:18
Alignment explanation
Indices: 37431977--37432016 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
37431967 AATCTTTAAG
37431977 ATTATACTTTTTTGGGAA
1 ATTATACTTTTTTGGGAA
37431995 ATTATACTTTTTTGGGAA
1 ATTATACTTTTTTGGGAA
37432013 ATTA
1 ATTA
37432017 ACCATGTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (18 bp):
ATTATACTTTTTTGGGAA
Found at i:37444488 original size:58 final size:57
Alignment explanation
Indices: 37444420--37444583 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 57
37444410 TTTATAGTAT
* *
37444420 ATTATATATTACGATTTT-TT-AATTCATA-TAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTA--ATTTTATTAAATT-ATATTAATAATAATTATATTAA-AATATGATTAA
*
37444478 ATTATATATT-ATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAA
1 ATTATATATTAATTTTATTAAATTATA-TTAATAATAATTATATTAAAATATGATTAA
* * *
37444535 ATTATTTATTATTTTTATTAAATTATTTTTAATAATAATCT-TATTAAAA
1 ATTATATATTAATTTTATTAAATTA-TATTAATAATAAT-TATATTAAAA
37444584 ATTAATAACA
Statistics
Matches: 92, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
55 5 0.05
56 5 0.05
57 22 0.24
58 58 0.63
59 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (57 bp):
ATTATATATTAATTTTATTAAATTATATTAATAATAATTATATTAAAATATGATTAA
Found at i:37464145 original size:54 final size:54
Alignment explanation
Indices: 37464043--37464158 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
37464033 TTGTGTGTAT
* * * ***
37464043 CAAGTCAGAGAGTTACACGGTTTAGTACACGGCCTATGTCACGACCGTGTAACA
1 CAAGTTAGAGAGTTACACGGTCTAGCACACGGCCTACAACACGACCGTGTAACA
* * * *
37464097 CAAGTTAGAGAGTTACACTGTCTAGCACACGGCCTACAACACGGCCGTGTGACC
1 CAAGTTAGAGAGTTACACGGTCTAGCACACGGCCTACAACACGACCGTGTAACA
37464151 CAAGTTAG
1 CAAGTTAG
37464159 TAAGTTGCAC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (54 bp):
CAAGTTAGAGAGTTACACGGTCTAGCACACGGCCTACAACACGACCGTGTAACA
Found at i:37469240 original size:43 final size:41
Alignment explanation
Indices: 37469163--37469324 Score: 146
Period size: 43 Copynumber: 3.8 Consensus size: 41
37469153 TGATAAGTGT
* *
37469163 TTTCGTGTAAGACCACGTCTGGAACGATGGCATCGAGTTGTA
1 TTTCGTGTAAGACCACGTCTGGGA-GATGGCATCGACTTGTA
*
37469205 TTTCTGTGTAAGACCACGTCTGGGATGATGACATCGACTTGTA
1 TTTC-GTGTAAGACCACGTCTGGGA-GATGGCATCGACTTGTA
* * * *
37469248 TTTTTGGGTAAGACC-CTGTCTGGGACAGTGGCATCGATTTGTGA
1 -TTTCGTGTAAGACCAC-GTCTGGGAGA-TGGCATCGACTTGT-A
* * * *
37469292 TTACATGTAGGACCACGTCTGGGACGTTGGCAT
1 TTTCGTGTAAGACCACGTCTGGGA-GATGGCAT
37469325 TGTACGAATC
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
42 6 0.06
43 86 0.89
44 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TTTCGTGTAAGACCACGTCTGGGAGATGGCATCGACTTGTA
Found at i:37475898 original size:21 final size:22
Alignment explanation
Indices: 37475874--37475918 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
37475864 TATTTAACCC
*
37475874 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
37475895 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
37475917 AA
1 AA
37475919 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:37476676 original size:21 final size:21
Alignment explanation
Indices: 37476652--37476693 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37476642 TAGGAACACA
*
37476652 AGGTGAATAGCCTCGTTGTGG
1 AGGTGAACAGCCTCGTTGTGG
* *
37476673 AGGTGAACGGTCTCGTTGTGG
1 AGGTGAACAGCCTCGTTGTGG
37476694 CTGCCTTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.40, T:0.29
Consensus pattern (21 bp):
AGGTGAACAGCCTCGTTGTGG
Found at i:37477898 original size:50 final size:50
Alignment explanation
Indices: 37477838--37477979 Score: 180
Period size: 50 Copynumber: 2.8 Consensus size: 50
37477828 GAAAGTGATG
* *
37477838 GTCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTACCGGAAT-G-ATA
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATCGAATA
* *
37477887 GGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATCGTAATA
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATCG-AATA
* * *
37477939 GTCACATCTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
37477980 AACATCATTG
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
49 2 0.03
50 39 0.49
51 36 0.45
52 3 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATCGAATA
Found at i:37478032 original size:45 final size:45
Alignment explanation
Indices: 37477976--37478068 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
37477966 TACTATGTGA
* *
37477976 ACCGAACATCATTGATTAGTAAAGTGCTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGCTTGCTATGTGCTGAATCC
* * *
37478021 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGCTTGCTATGTGCTGAATCC
37478066 ACC
1 ACC
37478069 AAGTATCTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGCTTGCTATGTGCTGAATCC
Found at i:37479739 original size:47 final size:47
Alignment explanation
Indices: 37479671--37479764 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
37479661 AATTGCATGA
*
37479671 GTATGTATTGGGTCTTAGAAGCCCTATTTGTTACAAATATAGTATTT
1 GTATGTATTGGATCTTAGAAGCCCTATTTGTTACAAATATAGTATTT
37479718 GTATGTATTGGATCTTAGAAGCCCTATTTGTTACAAATATAGTATTT
1 GTATGTATTGGATCTTAGAAGCCCTATTTGTTACAAATATAGTATTT
37479765 TGAAGCTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (47 bp):
GTATGTATTGGATCTTAGAAGCCCTATTTGTTACAAATATAGTATTT
Found at i:37491849 original size:39 final size:40
Alignment explanation
Indices: 37491727--37491911 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
37491717 GCTACTCGTT
* *
37491727 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37491767 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
37491807 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* ** * * * *
37491846 CAAATGCCTTC-GGATCGTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37491887 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37491912 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 74 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37491872 original size:79 final size:82
Alignment explanation
Indices: 37491727--37491911 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 82
37491717 GCTACTCGTT
* * * *
37491727 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACGTAACCCG
* *
37491791 GATTTAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * ***
37491807 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGGACAAATGCCTTC-GGATCGTAGTTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CGTAACCC
* *
37491869 GGATATGGTCACTTAGCA
65 GGATATAGTAACTTAGCA
37491887 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37491912 CATCATTCGA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.59
80 33 0.38
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACGTAACCCG
GATATAGTAACTTAGCA
Found at i:37493106 original size:56 final size:56
Alignment explanation
Indices: 37493039--37493158 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37493029 TATTAGTTTA
37493039 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
37493095 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
37493151 TTGCCCAT
1 TTGCCCAT
37493159 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:37496443 original size:16 final size:17
Alignment explanation
Indices: 37496419--37496452 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37496409 TTAATTTTAC
*
37496419 TTAATTAATTTTC-CAA
1 TTAAATAATTTTCTCAA
37496435 TTAAATAATTTTCTCAA
1 TTAAATAATTTTCTCAA
37496452 T
1 T
37496453 ACAATTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAATAATTTTCTCAA
Found at i:37496984 original size:38 final size:39
Alignment explanation
Indices: 37496927--37497002 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
37496917 ATTATAGTTT
37496927 GAGTCTTTAATTATGTCATAATTTGAACAACATTAATAA
1 GAGTCTTTAATTATGTCATAATTTGAACAACATTAATAA
* *
37496966 GAGT-TTTAATTATTTCATAATTTGAACATCATTAATA
1 GAGTCTTTAATTATGTCATAATTTGAACAACATTAATA
37497003 TGTACCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (39 bp):
GAGTCTTTAATTATGTCATAATTTGAACAACATTAATAA
Found at i:37505082 original size:38 final size:39
Alignment explanation
Indices: 37505028--37505118 Score: 130
Period size: 38 Copynumber: 2.4 Consensus size: 39
37505018 TATTATAGTT
*
37505028 TGAGTCTTTAATTATGTCATAATTTGAACAACATTAATA
1 TGAGTCTTTAATTATGTCATAATCTGAACAACATTAATA
* *
37505067 TGAGT-TTTATTTATGTCATAATCTGAACATCATTAATA
1 TGAGTCTTTAATTATGTCATAATCTGAACAACATTAATA
* *
37505105 TGTGTCTTTTATTA
1 TGAGTCTTTAATTA
37505119 AGTTTTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 34 0.76
39 11 0.24
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (39 bp):
TGAGTCTTTAATTATGTCATAATCTGAACAACATTAATA
Found at i:37511453 original size:6 final size:6
Alignment explanation
Indices: 37511399--37511438 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
37511389 TCAAAAGAAA
37511399 TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTT
1 TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTTGC TTTT
37511439 CTTCTTTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.70
Consensus pattern (6 bp):
TTTTGC
Found at i:37512966 original size:23 final size:23
Alignment explanation
Indices: 37512940--37512983 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
37512930 AAATTAAATT
37512940 TCGAATT-ATTCAAATCTATTTAA
1 TCGAATTAATT-AAATCTATTTAA
* *
37512963 TCGAGTTAATTGAATCTATTT
1 TCGAATTAATTAAATCTATTT
37512984 GAATTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (23 bp):
TCGAATTAATTAAATCTATTTAA
Found at i:37513192 original size:19 final size:19
Alignment explanation
Indices: 37513164--37513209 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
37513154 TCCTTTTTTC
*
37513164 CCCCTCAAAACTTTTACTT
1 CCCCTAAAAACTTTTACTT
*
37513183 CCCCTAAAAAGTTTTACTT
1 CCCCTAAAAACTTTTACTT
37513202 CCCCTAAA
1 CCCCTAAA
37513210 CTTCCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.35, G:0.02, T:0.33
Consensus pattern (19 bp):
CCCCTAAAAACTTTTACTT
Found at i:37513346 original size:36 final size:38
Alignment explanation
Indices: 37513280--37513351 Score: 103
Period size: 36 Copynumber: 1.9 Consensus size: 38
37513270 AAAACTTTTT
*
37513280 TTTCACATTTATGTCTACTATTTATATTATTGAATTAAA
1 TTTCACATTTATG-CTAATATTTATATTATTGAATTAAA
*
37513319 TTTCACATTT-TG-TAATATTTATTTTATTGAATT
1 TTTCACATTTATGCTAATATTTATATTATTGAATT
37513352 GTTTAATCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 19 0.61
38 2 0.06
39 10 0.32
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (38 bp):
TTTCACATTTATGCTAATATTTATATTATTGAATTAAA
Found at i:37522738 original size:19 final size:17
Alignment explanation
Indices: 37522704--37522738 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
37522694 CTAAAATGGT
37522704 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
37522721 AACAAGAATTATACAATA
1 AACAA-AATTA-ACAATA
37522739 TTTAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:37522747 original size:22 final size:22
Alignment explanation
Indices: 37522720--37522762 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37522710 ATTAACAATA
* *
37522720 AAACAAGAATTATACAATATTT
1 AAACAAGAATAATAAAATATTT
*
37522742 AAACAATAATAATAAAATATT
1 AAACAAGAATAATAAAATATT
37522763 AACAATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (22 bp):
AAACAAGAATAATAAAATATTT
Found at i:37523182 original size:32 final size:33
Alignment explanation
Indices: 37523145--37523220 Score: 95
Period size: 31 Copynumber: 2.4 Consensus size: 33
37523135 ACCAAAAATT
* * *
37523145 TATTTTAAAAATTAAAAAA-AGTATTTTAAAAA-
1 TATTTTAAAAATTAAAAAATAATA-ATAAAAAAG
37523177 TATTTT-AAAATTAAAAAATAATAATAAAAAAG
1 TATTTTAAAAATTAAAAAATAATAATAAAAAAG
37523209 TATTTTAAAAAT
1 TATTTTAAAAAT
37523221 ATTTTAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
31 18 0.47
32 15 0.39
33 5 0.13
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (33 bp):
TATTTTAAAAATTAAAAAATAATAATAAAAAAG
Found at i:37523235 original size:17 final size:17
Alignment explanation
Indices: 37523213--37523255 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
37523203 AAAAAGTATT
*
37523213 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
37523230 TTAAAAAT-TTTAAAAA
1 TTAAAAATATTTAAAAA
* *
37523246 ATAAATATAT
1 TTAAAAATAT
37523256 GTATTATATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:37524191 original size:31 final size:31
Alignment explanation
Indices: 37524154--37524243 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 31
37524144 ACAATTAAAT
37524154 GAGAAAATCAAAGTTTCATGTATAGAATTGA
1 GAGAAAATCAAAGTTTCATGTATAGAATTGA
* * * *
37524185 -ATGAAAATTAAAGTTTTATATATATAATT-A
1 GA-GAAAATCAAAGTTTCATGTATAGAATTGA
* * *
37524215 GAGCAAATCAAA-ATTCATGTATTGAATTG
1 GAGAAAATCAAAGTTTCATGTATAGAATTG
37524244 CACATTTGAT
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
29 11 0.24
30 10 0.22
31 24 0.53
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (31 bp):
GAGAAAATCAAAGTTTCATGTATAGAATTGA
Found at i:37524760 original size:30 final size:29
Alignment explanation
Indices: 37524725--37524781 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
37524715 GCCACAGGGG
37524725 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGGCCGTGTC-CCTGACCGTGTGTC
* *
37524755 ACACACGTCCGTGTCTCTGACCGTGTG
1 ACACACGGCCGTGTCCCTGACCGTGTG
37524782 GATGAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.16, C:0.35, G:0.26, T:0.23
Consensus pattern (29 bp):
ACACACGGCCGTGTCCCTGACCGTGTGTC
Found at i:37527946 original size:13 final size:13
Alignment explanation
Indices: 37527930--37527955 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37527920 TTTTTATTTA
37527930 TATTTATATTTTT
1 TATTTATATTTTT
37527943 TATTTATATTTTT
1 TATTTATATTTTT
37527956 ATCAAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTATATTTTT
Found at i:37528084 original size:22 final size:21
Alignment explanation
Indices: 37528059--37528124 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 21
37528049 TTTAAATATT
37528059 TAAAATTTAAAAAATTATTAAA
1 TAAAATTT-AAAAATTATTAAA
* *
37528081 TAAAATTTTAACATTATT--A
1 TAAAATTTAAAAATTATTAAA
37528100 -AAAATTATAAAAATTA-TAAA
1 TAAAATT-TAAAAATTATTAAA
37528120 -AAAAT
1 TAAAAT
37528125 ATACTTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 7 0.19
19 8 0.22
20 6 0.16
21 8 0.22
22 8 0.22
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAATTTAAAAATTATTAAA
Found at i:37528090 original size:38 final size:40
Alignment explanation
Indices: 37528037--37528124 Score: 105
Period size: 38 Copynumber: 2.3 Consensus size: 40
37528027 CACGTCAATA
** *
37528037 ATTAAATAATCTTTTAA-A-TATTTAAAATT-TAAAAAATT
1 ATTAAATAAAATTTTAACATTATTAAAAATTAT-AAAAATT
37528075 ATTAAATAAAATTTTAACATTATTAAAAATTATAAAAATT
1 ATTAAATAAAATTTTAACATTATTAAAAATTATAAAAATT
37528115 A-TAAA-AAAAT
1 ATTAAATAAAAT
37528125 ATACTTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
38 20 0.45
39 5 0.11
40 18 0.41
41 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (40 bp):
ATTAAATAAAATTTTAACATTATTAAAAATTATAAAAATT
Found at i:37536393 original size:18 final size:18
Alignment explanation
Indices: 37536370--37536404 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37536360 TGTGGGCCAC
*
37536370 ACGGGCGTGTAGGCCCAT
1 ACGGGCATGTAGGCCCAT
*
37536388 ACGGGCATGTGGGCCCA
1 ACGGGCATGTAGGCCCA
37536405 AGATTCTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (18 bp):
ACGGGCATGTAGGCCCAT
Found at i:37539421 original size:110 final size:110
Alignment explanation
Indices: 37539225--37539544 Score: 385
Period size: 110 Copynumber: 2.9 Consensus size: 110
37539215 ACTTTGACCA
* * * * *
37539225 GCTCATGATGCTACTCACACAAGCTATAGAGAATCCGCAATACATGTAGGATCTCAAGCCATTGT
1 GCTCATGATGCTGCTCACACAAGCTATAGAGAATCCGCAACATATGCAGGATCTCAAGCCATCGT
* * *
37539290 TACGGTCTGTATCACCAGTACATAGTACCTACTAATTAATCCCTC-
66 TACGGTCTGTATCATCGGTACATAGTACCTACTAATTAA-CCCCCG
* * * ** * * *
37539335 TCTCATGATACTGCTCACACAAGTTGCAGAGAAGCCACAACATATGCAGGATCTCAAGCCAACGT
1 GCTCATGATGCTGCTCACACAAGCTATAGAGAATCCGCAACATATGCAGGATCTCAAGCCATCGT
*
37539400 TACGGCCTGTATCATCGGTACATAGTACCTACTAATTAACCCCCG
66 TACGGTCTGTATCATCGGTACATAGTACCTACTAATTAACCCCCG
* * * *
37539445 GCTCACGATGCTGCTCACATAAGCTATAAAGAATCTGCAACATATGCAGGATCTCAAGCCATCGT
1 GCTCATGATGCTGCTCACACAAGCTATAGAGAATCCGCAACATATGCAGGATCTCAAGCCATCGT
* *
37539510 TA-GTGTCTGTATCAAT-GGTACATAGCACGTACTAA
66 TACG-GTCTGTATC-ATCGGTACATAGTACCTACTAA
37539545 ATGATCACCG
Statistics
Matches: 175, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
109 5 0.03
110 168 0.96
111 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (110 bp):
GCTCATGATGCTGCTCACACAAGCTATAGAGAATCCGCAACATATGCAGGATCTCAAGCCATCGT
TACGGTCTGTATCATCGGTACATAGTACCTACTAATTAACCCCCG
Found at i:37539635 original size:40 final size:40
Alignment explanation
Indices: 37539591--37539667 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
37539581 ACAAGGCCTT
*
37539591 CTAGGCACAAAGCTCGATAAACACACCGA-CACAAAGCTTG
1 CTAGGCACAAAGCTAGATAAACACACC-ATCACAAAGCTTG
*
37539631 CTAGGCACAAAGCTAGATAAATACACCATCACAAAGC
1 CTAGGCACAAAGCTAGATAAACACACCATCACAAAGC
37539668 CCGATAGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.43, C:0.29, G:0.16, T:0.13
Consensus pattern (40 bp):
CTAGGCACAAAGCTAGATAAACACACCATCACAAAGCTTG
Found at i:37539673 original size:24 final size:24
Alignment explanation
Indices: 37539636--37539723 Score: 77
Period size: 25 Copynumber: 3.6 Consensus size: 24
37539626 GCTTGCTAGG
** *
37539636 CACAAAGCTAGATAAATACACCAT
1 CACAAAGCCCGATAAATACACCAA
* **
37539660 CACAAAGCCCGATAGATAACACCGG
1 CACAAAGCCCGATAAAT-ACACCAA
*
37539685 CATAAAGCCCGATAAATAGCACCAA
1 CACAAAGCCCGATAAATA-CACCAA
* *
37539710 CATAAAGCCTGATA
1 CACAAAGCCCGATA
37539724 TTCAGGTACA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
24 15 0.29
25 37 0.71
ACGTcount: A:0.45, C:0.27, G:0.14, T:0.14
Consensus pattern (24 bp):
CACAAAGCCCGATAAATACACCAA
Found at i:37539691 original size:25 final size:25
Alignment explanation
Indices: 37539646--37539723 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 25
37539636 CACAAAGCTA
* *
37539646 GATAAAT-ACACCATCACAAAGCCC
1 GATAAATAACACCAACATAAAGCCC
* **
37539670 GATAGATAACACCGGCATAAAGCCC
1 GATAAATAACACCAACATAAAGCCC
* *
37539695 GATAAATAGCACCAACATAAAGCCT
1 GATAAATAACACCAACATAAAGCCC
37539720 GATA
1 GATA
37539724 TTCAGGTACA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 6 0.14
25 38 0.86
ACGTcount: A:0.45, C:0.27, G:0.14, T:0.14
Consensus pattern (25 bp):
GATAAATAACACCAACATAAAGCCC
Found at i:37544768 original size:17 final size:17
Alignment explanation
Indices: 37544734--37544795 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
37544724 TGCGACAGTG
* **
37544734 ATAGGCTTGCTACAGCA
1 ATAGGATTGCTATGGCA
37544751 ATAGGATTGCTATGGCA
1 ATAGGATTGCTATGGCA
* *
37544768 AAAGGCTTGC-AGTGGCA
1 ATAGGATTGCTA-TGGCA
*
37544785 ATAAGATTGCT
1 ATAGGATTGCT
37544796 CTCGCAAGAG
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 1 0.03
17 34 0.97
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (17 bp):
ATAGGATTGCTATGGCA
Found at i:37546465 original size:38 final size:39
Alignment explanation
Indices: 37546373--37546472 Score: 121
Period size: 38 Copynumber: 2.6 Consensus size: 39
37546363 CGAATGTAAT
* * * * *
37546373 AATTATAATTACCATATTTATAATAATGTTTGAATGAAA
1 AATTATAATTACAATAATTATAATAATGATTCAATCAAA
* *
37546412 AATTACAATTACAATAATTATAATAAT-ATTCAATCATA
1 AATTATAATTACAATAATTATAATAATGATTCAATCAAA
*
37546450 AATTATAATTTCAATAATTATAA
1 AATTATAATTACAATAATTATAA
37546473 CAAAGATTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
38 28 0.54
39 24 0.46
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (39 bp):
AATTATAATTACAATAATTATAATAATGATTCAATCAAA
Found at i:37549747 original size:31 final size:31
Alignment explanation
Indices: 37549709--37549769 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
37549699 CAATCGAAAG
37549709 AAGTTACTAAGTCAATTCTAAAGACTTAAAA
1 AAGTTACTAAGTCAATTCTAAAGACTTAAAA
37549740 AAGTTACTAAGTCAATTCTAAAGACTTAAA
1 AAGTTACTAAGTCAATTCTAAAGACTTAAA
37549770 CCTTCATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.30
Consensus pattern (31 bp):
AAGTTACTAAGTCAATTCTAAAGACTTAAAA
Found at i:37550010 original size:24 final size:24
Alignment explanation
Indices: 37549983--37550028 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37549973 ACATACTTTA
*
37549983 AAAATTCATGCGAAATACCTTATT
1 AAAATTCATGCAAAATACCTTATT
* *
37550007 AAAATTGATGCAAAATGCCTTA
1 AAAATTCATGCAAAATACCTTA
37550029 CCCCTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (24 bp):
AAAATTCATGCAAAATACCTTATT
Found at i:37551479 original size:27 final size:27
Alignment explanation
Indices: 37551449--37551626 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
37551439 ATATTGAGCC
* * *
37551449 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
37551476 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
37551503 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
37551531 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
37551558 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
37551585 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
37551612 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37551627 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:37551542 original size:55 final size:55
Alignment explanation
Indices: 37551449--37551626 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
37551439 ATATTGAGCC
* * *
37551449 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
37551503 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
37551558 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
37551612 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37551627 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:37551588 original size:82 final size:81
Alignment explanation
Indices: 37551470--37551625 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
37551460 TGCTATACAA
* * *
37551470 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
37551535 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
37551552 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
37551616 CACTTAGTGC
65 CACTTAGTGC
37551626 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37567893 original size:29 final size:28
Alignment explanation
Indices: 37567861--37567921 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
37567851 AAAAATCCAT
*
37567861 TTTTTTAAAAATTTATCGAAATGGGCCAA
1 TTTTTTAAAAATTTACCGAAATGGGCC-A
* ** *
37567890 TTTTTTGATTATTTACCGGAATGGGCCA
1 TTTTTTAAAAATTTACCGAAATGGGCCA
37567918 TTTT
1 TTTT
37567922 CCGGGAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.44
Consensus pattern (28 bp):
TTTTTTAAAAATTTACCGAAATGGGCCA
Found at i:37568420 original size:123 final size:123
Alignment explanation
Indices: 37568201--37568425 Score: 396
Period size: 123 Copynumber: 1.8 Consensus size: 123
37568191 TTATTTCGAG
** **
37568201 TTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGTTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
*
37568266 AAATCGCGTCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
37568324 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAATAAATTGTG
1 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
37568389 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
37568426 CAAGTTTGGG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 96 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
Found at i:37570115 original size:123 final size:123
Alignment explanation
Indices: 37569891--37570115 Score: 396
Period size: 123 Copynumber: 1.8 Consensus size: 123
37569881 TTATTTCGAG
* ** **
37569891 TTGATGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGTTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
37569956 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
37570014 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAATAAATTGTG
1 TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
37570079 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
37570116 CAAGTTTGGG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 96 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGACCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
Found at i:37573254 original size:10 final size:10
Alignment explanation
Indices: 37573225--37573267 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
37573215 CAAATCTAAC
37573225 ATTATGTAAA
1 ATTATGTAAA
*
37573235 ATTA--TCAA
1 ATTATGTAAA
37573243 ATTATGTAAA
1 ATTATGTAAA
37573253 ATTATGTAAA
1 ATTATGTAAA
37573263 ATTAT
1 ATTAT
37573268 TAAGCCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 7 0.24
10 22 0.76
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:37573312 original size:18 final size:18
Alignment explanation
Indices: 37573289--37573323 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37573279 TTTTTTAATT
37573289 AAATTAGGTAAAATTATC
1 AAATTAGGTAAAATTATC
*
37573307 AAATTATGTAAAATTAT
1 AAATTAGGTAAAATTAT
37573324 TAAGTCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATTAGGTAAAATTATC
Found at i:37573371 original size:55 final size:56
Alignment explanation
Indices: 37573251--37573377 Score: 179
Period size: 55 Copynumber: 2.3 Consensus size: 56
37573241 AAATTATGTA
* *
37573251 AAATTATGTAAAATTATTAAGCCAAAATTTTTTTAATTAAATTAGGTAAAATTATC
1 AAATTATGTAAAATTATTAAGCCAAAATTGTGTTAATTAAATTAGGTAAAATTATC
**
37573307 AAATTATGTAAAATTATTAAGTCCAACAATTGTGTTAA-T-GGTTA-GTAAAATTATC
1 AAATTATGTAAAATTATTAAG-CCAA-AATTGTGTTAATTAAATTAGGTAAAATTATC
37573362 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
37573378 GGTTAGGGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
55 27 0.42
56 24 0.37
57 5 0.08
58 9 0.14
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (56 bp):
AAATTATGTAAAATTATTAAGCCAAAATTGTGTTAATTAAATTAGGTAAAATTATC
Found at i:37573409 original size:29 final size:29
Alignment explanation
Indices: 37573375--37573721 Score: 236
Period size: 29 Copynumber: 13.2 Consensus size: 29
37573365 TTATGTAAAA
37573375 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573404 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
* * *
37573433 TTAGGGTT----TTA----ATTAAATTAGG
1 TTA-GGTTAGGGTTAGGGTTTTTAATTAAG
37573455 TTAGGGTTA--G----GGTTTTTAATTAAG
1 TTA-GGTTAGGGTTAGGGTTTTTAATTAAG
* * *
37573479 TTAGGGCTT----TTA----ATTAAATTAGG
1 TTA-GG-TTAGGGTTAGGGTTTTTAATTAAG
* *
37573502 TTAGGGTTAGGGTTAGTGTTTTTAATTAAA
1 TTA-GGTTAGGGTTAGGGTTTTTAATTAAG
*
37573532 TTAGGTTAGAGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573561 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573590 TTAGGTTAGGGTTA-GGTTTTTAATT-A-
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573616 --A-GTTA-GGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
* * * *
37573641 TTAGGGTT---TTTA----ATTAAATTAGG
1 TTA-GGTTAGGGTTAGGGTTTTTAATTAAG
37573664 TTA-G--A--GTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573688 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAG
37573717 TTAGG
1 TTAGG
37573722 GCTTTTAATT
Statistics
Matches: 258, Mismatches: 25, Indels: 70
0.73 0.07 0.20
Matches are distributed among these distances:
20 3 0.01
21 1 0.00
22 23 0.09
23 40 0.16
24 27 0.10
25 3 0.01
26 6 0.02
27 6 0.02
28 11 0.04
29 124 0.48
30 14 0.05
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (29 bp):
TTAGGTTAGGGTTAGGGTTTTTAATTAAG
Found at i:37573437 original size:18 final size:17
Alignment explanation
Indices: 37573414--37573501 Score: 71
Period size: 18 Copynumber: 5.4 Consensus size: 17
37573404 TTAGGTTAGG
37573414 GTTAGGGTTTTTAATTAA
1 GTTAGGG-TTTTAATTAA
37573432 GTTAGGGTTTTAATTAA
1 GTTAGGGTTTTAATTAA
* **
37573449 ATTA-GG--TT-A--GG
1 GTTAGGGTTTTAATTAA
37573460 GTTAGGGTTTTTAATTAA
1 GTTAGGG-TTTTAATTAA
37573478 GTTAGGGCTTTTAATTAA
1 GTTAGGG-TTTTAATTAA
*
37573496 ATTAGG
1 GTTAGG
37573502 TTAGGGTTAG
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
11 3 0.05
12 2 0.04
13 1 0.02
14 2 0.04
15 2 0.04
16 3 0.05
17 13 0.24
18 29 0.53
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.45
Consensus pattern (17 bp):
GTTAGGGTTTTAATTAA
Found at i:37573508 original size:47 final size:47
Alignment explanation
Indices: 37573385--37573850 Score: 346
Period size: 47 Copynumber: 9.1 Consensus size: 47
37573375 TTAGGTTAGG
*
37573385 GTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
37573432 GTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
*
37573478 GTTAGGGCTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGTGTTTTTAATTAAATTAGGTTAGA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA--G---G-G--TTT--TT-AATTA------A
*
37573542 GTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
* * * *
37573589 GTTA-GGTTAGGGTTAGGTTTTTAATTAAGTTA-GGTTAGGGTTTTTAATTAA
1 GTTAGGGTT---TTTA---ATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
*
37573640 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
* * * * **** * * *
37573687 GTTA-GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGCTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTT---TTTA----ATTAAATTAGGTTAGGG-TTAGGGTT--TTTA-ATTA-A
37573745 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTTAGGGTTTTTAATTAA
*
37573798 GTTAGGGTTTTTAATTAAATTATGTTAGGGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
*
37573845 ATTAGG
1 GTTAGG
37573851 TTAGGGTTAG
Statistics
Matches: 336, Mismatches: 38, Indels: 90
0.72 0.08 0.19
Matches are distributed among these distances:
46 64 0.19
47 88 0.26
48 3 0.01
49 10 0.03
50 1 0.00
51 23 0.07
52 19 0.06
53 36 0.11
54 9 0.03
55 7 0.02
56 9 0.03
57 12 0.04
58 17 0.05
59 5 0.01
62 1 0.00
64 32 0.10
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (47 bp):
GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
Found at i:37573535 original size:82 final size:81
Alignment explanation
Indices: 37573432--37573897 Score: 548
Period size: 82 Copynumber: 5.9 Consensus size: 81
37573422 TTTTAATTAA
*
37573432 GTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGCTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
37573496 ATTAGGTTAGGGTTAGG
66 ATTAGGTTA-GGTTAGG
* * *
37573513 GTTAGTGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTT---TTTA--
* * *
37573577 GTTTTTAATTAAGTTAGGTTAGG
61 --ATTAAATTAGGTTAGGTTAGG
37573600 GTTA-GGTTTTTAATT--A--A-GTTA-GGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
37573658 ATTAGGTTA-G--A--
66 ATTAGGTTAGGTTAGG
* *
37573669 GTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGCTTTTAATT-A
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
37573733 A--A--TTAGGTTAGG
66 ATTAGGTTAGGTTAGG
37573745 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTT
1 GTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTT
37573810 AATTAAATTA---T--GTTAGG
60 AATTAAATTAGGTTAGGTTAGG
*
37573827 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATCAA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
37573892 ATTAGG
66 ATTAGG
37573898 GTTTTTATTA
Statistics
Matches: 335, Mismatches: 18, Indels: 67
0.80 0.04 0.16
Matches are distributed among these distances:
69 4 0.01
70 11 0.03
71 4 0.01
72 1 0.00
73 2 0.01
74 13 0.04
75 6 0.02
76 96 0.29
77 5 0.01
78 3 0.01
79 1 0.00
80 22 0.07
81 22 0.07
82 105 0.31
83 2 0.01
84 5 0.01
85 1 0.00
86 10 0.03
87 11 0.03
88 11 0.03
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (81 bp):
GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAA
ATTAGGTTAGGTTAGG
Found at i:37573673 original size:98 final size:99
Alignment explanation
Indices: 37573375--37573721 Score: 350
Period size: 98 Copynumber: 3.3 Consensus size: 99
37573365 TTATGTAAAA
37573375 TTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGG-
1 TTAGGTTAGGGTTAGGGTTTTTAATT-A---A-GTTA-GGTTAGGGTTTTTAATTAAGTTAGGGT
*
37573439 TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAG
60 TTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAG
* * * * *
37573479 TTAGGGCTT----TTA--ATTAAATTAGGTTAGGGTTAGGGTTAGTGTTTTTAATTAAATTAGGT
1 TTA-GG-TTAGGGTTAGGGTT--TTTA-ATTA-AGTTA-GGTTAG-G-GTTT--TT--A--A--T
* *
37573538 TAGAGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAG
49 TA-AGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAG
37573590 TTAGGTTAGGGTTA-GGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAA
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAA
37573654 TTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAG
66 TTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAG
37573688 TTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGG
1 TTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGG
37573722 GCTTTTAATT
Statistics
Matches: 206, Mismatches: 14, Indels: 51
0.76 0.05 0.19
Matches are distributed among these distances:
98 61 0.30
99 33 0.16
100 3 0.01
101 4 0.02
102 7 0.03
103 5 0.02
104 3 0.01
105 5 0.02
106 2 0.01
107 4 0.02
108 1 0.00
109 11 0.05
110 14 0.07
111 45 0.22
112 3 0.01
113 3 0.01
114 2 0.01
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (99 bp):
TTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAA
TTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAG
Found at i:37573748 original size:29 final size:29
Alignment explanation
Indices: 37573716--37573879 Score: 154
Period size: 29 Copynumber: 5.8 Consensus size: 29
37573706 TTTTAATTAA
*
37573716 GTTAGGGCTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAGGTTAGG
37573745 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAGGTTAGG
*
37573774 GTTAGGGTTAGGGTTT--TT-AATTAAGTTAGG
1 GTTAGGGTT----TTTAATTAAATTAGGTTAGG
37573804 GTT----TTTAATTAAATT--A-T--GTTAGG
1 GTTAGGGTTT--TT-AATTAAATTAGGTTAGG
37573827 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAGGTTAGG
*
37573856 GTTAGGGTTTTTAATTAAGTTAGG
1 GTTAGGGTTTTTAATTAAATTAGG
37573880 GTTTTTAATC
Statistics
Matches: 114, Mismatches: 3, Indels: 36
0.75 0.02 0.24
Matches are distributed among these distances:
22 1 0.01
23 9 0.08
24 6 0.05
25 3 0.03
26 4 0.04
27 6 0.05
29 66 0.58
30 14 0.12
31 2 0.02
33 3 0.03
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (29 bp):
GTTAGGGTTTTTAATTAAATTAGGTTAGG
Found at i:37573879 original size:18 final size:18
Alignment explanation
Indices: 37573856--37573904 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
37573846 TTAGGTTAGG
*
37573856 GTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATCAA
37573874 GTTAGGGTTTTTAATCAA
1 GTTAGGGTTTTTAATCAA
*
37573892 ATTAGGGTTTTTA
1 GTTAGGGTTTTTA
37573905 TTACATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (18 bp):
GTTAGGGTTTTTAATCAA
Found at i:37573958 original size:25 final size:26
Alignment explanation
Indices: 37573900--37573963 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
37573890 AAATTAGGGT
37573900 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATAGAACTTCTA
* *
37573926 TTTTATTATATTAAATA-AACGTT-TA
1 TTTTATTACATCAAATAGAAC-TTCTA
37573951 TTTTATTACATCA
1 TTTTATTACATCA
37573964 GATAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 16 0.48
26 17 0.52
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.48
Consensus pattern (26 bp):
TTTTATTACATCAAATAGAACTTCTA
Found at i:37573968 original size:25 final size:25
Alignment explanation
Indices: 37573900--37573968 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 25
37573890 AAATTAGGGT
37573900 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATA-AACTTCTA
* *
37573926 TTTTATTATATTAAATAAACGTT-TA
1 TTTTATTACATCAAATAAAC-TTCTA
*
37573951 TTTTATTACATCAGATAA
1 TTTTATTACATCAAATAA
37573969 TAAATTTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 20 0.54
26 17 0.46
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.46
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:37575066 original size:7 final size:7
Alignment explanation
Indices: 37575056--37575080 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37575046 TTATATACAT
37575056 AATACTA
1 AATACTA
37575063 AATACTA
1 AATACTA
37575070 AATACTA
1 AATACTA
37575077 AATA
1 AATA
37575081 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:37576262 original size:29 final size:29
Alignment explanation
Indices: 37576230--37576313 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
37576220 AATTGAAATT
37576230 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
37576259 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
37576281 AAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
37576310 AAAT
1 AAAT
37576314 TGAATGAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
22 9 0.23
23 4 0.10
24 4 0.10
27 5 0.13
28 4 0.10
29 13 0.33
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:37576272 original size:51 final size:51
Alignment explanation
Indices: 37576207--37576316 Score: 202
Period size: 51 Copynumber: 2.2 Consensus size: 51
37576197 TTTTAAAAAT
*
37576207 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
*
37576258 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
37576309 GAAATTGA
1 GAAATTGA
37576317 ATGAATTTTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:37576316 original size:22 final size:22
Alignment explanation
Indices: 37576291--37576341 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 22
37576281 AAATATGGGT
37576291 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37576313 TTGA-ATGAATTTTGGAAGGAAA
1 TTGAGA-GAATTTTGGAAGGAAA
37576335 TTGAGAG
1 TTGAGAG
37576342 GATTAGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:37578597 original size:17 final size:17
Alignment explanation
Indices: 37578575--37578612 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
37578565 TAAAAAACAA
37578575 CATAACTCTTGACCTTT
1 CATAACTCTTGACCTTT
37578592 CATAACTCTTGACCTTT
1 CATAACTCTTGACCTTT
37578609 CATA
1 CATA
37578613 TAACATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.29, G:0.05, T:0.39
Consensus pattern (17 bp):
CATAACTCTTGACCTTT
Found at i:37586997 original size:17 final size:17
Alignment explanation
Indices: 37586977--37587009 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37586967 GTTATGTTAT
37586977 ATGAAAGGTCAAGAGTC
1 ATGAAAGGTCAAGAGTC
*
37586994 ATGAAATGTCAAGAGT
1 ATGAAAGGTCAAGAGT
37587010 TATGTTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.21
Consensus pattern (17 bp):
ATGAAAGGTCAAGAGTC
Found at i:37591721 original size:17 final size:17
Alignment explanation
Indices: 37591701--37591733 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37591691 GTTATGTTAT
37591701 ATGAAAGGTCAAGAGTC
1 ATGAAAGGTCAAGAGTC
37591718 ATGAAAGGTCAAGAGT
1 ATGAAAGGTCAAGAGT
37591734 TATGTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (17 bp):
ATGAAAGGTCAAGAGTC
Found at i:37602212 original size:28 final size:28
Alignment explanation
Indices: 37602180--37602235 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37602170 TTCAGTCTAT
37602180 ACCAACATATGCAATGCCAGTTTTCCTA
1 ACCAACATATGCAATGCCAGTTTTCCTA
37602208 ACCAACATATGCAATGCCAGTTTTCCTA
1 ACCAACATATGCAATGCCAGTTTTCCTA
37602236 GCTCTTAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (28 bp):
ACCAACATATGCAATGCCAGTTTTCCTA
Found at i:37603556 original size:20 final size:20
Alignment explanation
Indices: 37603522--37603563 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
37603512 AACTTTTTAA
** *
37603522 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
37603542 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
37603562 AT
1 AT
37603564 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:37608626 original size:15 final size:15
Alignment explanation
Indices: 37608602--37608632 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37608592 ATTAAGCAAA
*
37608602 ATGCTTAGTAAGTTT
1 ATGCTCAGTAAGTTT
37608617 ATGCTCAGTAAGTTT
1 ATGCTCAGTAAGTTT
37608632 A
1 A
37608633 CAAGTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (15 bp):
ATGCTCAGTAAGTTT
Found at i:37609093 original size:50 final size:50
Alignment explanation
Indices: 37608949--37609238 Score: 314
Period size: 50 Copynumber: 5.7 Consensus size: 50
37608939 ACATGCTAAA
** * *
37608949 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAAT
* * * * ** * *
37608998 TCCATATCCCAGATATGGCCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
* ** * *
37609048 GCCATGTCCCAGACATGGTCTAACGGGGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
*
37609098 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
* *
37609148 GCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATGATCTCAAGGATGTCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG-TGCCAAT
*
37609204 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37609239 TTACCCAAAT
Statistics
Matches: 200, Mismatches: 33, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 32 0.16
50 122 0.61
53 4 0.02
55 2 0.01
56 39 0.19
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
Found at i:37612676 original size:15 final size:15
Alignment explanation
Indices: 37612656--37612686 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37612646 AGTAAGAAAA
37612656 ATGCTTAGTAAGTTT
1 ATGCTTAGTAAGTTT
37612671 ATGCTTAGTAAGTTT
1 ATGCTTAGTAAGTTT
37612686 A
1 A
37612687 CAAGTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.45
Consensus pattern (15 bp):
ATGCTTAGTAAGTTT
Found at i:37613120 original size:50 final size:50
Alignment explanation
Indices: 37613003--37613292 Score: 287
Period size: 50 Copynumber: 5.7 Consensus size: 50
37612993 ACATGCTAAA
** * *
37613003 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGGTGCCAAT
* * * ** *
37613052 GCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
** * *
37613102 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
* * * *
37613152 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTACCAGT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
** * * *
37613202 GTGATGTCCTAAACATGGTCTTACATGAGACCTCTCATGATCTCAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG-TGCCAAT
*
37613258 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37613293 TTACCCAAAT
Statistics
Matches: 194, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 33 0.17
50 122 0.63
53 2 0.01
55 2 0.01
56 34 0.18
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAAT
Found at i:37618158 original size:19 final size:19
Alignment explanation
Indices: 37618130--37618168 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37618120 CGGAAAATAA
37618130 TTTCTAAAAAATAATTTAC
1 TTTCTAAAAAATAATTTAC
*
37618149 TTTCTGAAAAATAATTTAC
1 TTTCTAAAAAATAATTTAC
37618168 T
1 T
37618169 GAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTCTAAAAAATAATTTAC
Found at i:37622892 original size:47 final size:47
Alignment explanation
Indices: 37622821--37623550 Score: 1136
Period size: 47 Copynumber: 15.3 Consensus size: 47
37622811 CCCTTCGGGA
* * * * * *
37622821 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37622868 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37622915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37622962 ATTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* **
37623009 CTTATCACATATATACACTTTCACATTCACCACATCGATCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37623056 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37623105 CTTATCACATATATACACATTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37623152 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37623199 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37623246 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37623295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37623342 CTTATCACATATATATACACTTTCACATTTACCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37623391 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37623438 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37623487 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37623538 CTTATCACATATA
1 CTTATCACATATA
37623551 CTATCATGTA
Statistics
Matches: 641, Mismatches: 32, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
47 412 0.64
49 181 0.28
51 48 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37623097 original size:96 final size:96
Alignment explanation
Indices: 37622821--37623550 Score: 1193
Period size: 96 Copynumber: 7.6 Consensus size: 96
37622811 CCCTTCGGGA
* * * * * * *
37622821 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
37622884 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
37622915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37622978 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
* **
37623009 CTTATCACATATATACACTTTCACATTCACCACATCGATCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37623074 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
* *
37623105 CTTATCACATATATACACATTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37623168 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
37623199 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37623264 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
37623295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
37623360 ACTTTCACATTTACCATATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
37623391 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
37623456 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
37623487 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
37623551 CTATCATGTA
Statistics
Matches: 596, Mismatches: 32, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
94 224 0.38
96 321 0.54
100 51 0.09
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCACCACATCGGCCATTAGGC
Found at i:37623142 original size:190 final size:190
Alignment explanation
Indices: 37622821--37623550 Score: 1203
Period size: 190 Copynumber: 3.8 Consensus size: 190
37622811 CCCTTCGGGA
* * * * * * * *
37622821 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
37622884 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
37622949 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
**
37623009 CTTATCACATATATACACTTTCACATTCACCACATCGATCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
*
37623074 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
37623139 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
37623199 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
37623264 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
37623329 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTTACCATATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCACCACATCGGCCATTAGGC
* *
37623391 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
37623456 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCAT
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC----ATATATACACTTTCACATTCAT
37623521 CACATCGGCCATTAGGCCTTATCACATATA
127 CACATCGGCCATTAGGCCTTATCACATATA
37623551 CTATCATGTA
Statistics
Matches: 508, Mismatches: 26, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
188 45 0.09
190 273 0.54
192 138 0.27
194 5 0.01
196 47 0.09
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
Found at i:37626109 original size:22 final size:22
Alignment explanation
Indices: 37626084--37626128 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37626074 AAAGGATGGT
37626084 TCACTTGGGTTAAGAATAGGAG
1 TCACTTGGGTTAAGAATAGGAG
37626106 TCACTTGGGTTAAGAATAGGAG
1 TCACTTGGGTTAAGAATAGGAG
37626128 T
1 T
37626129 GGTGGAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (22 bp):
TCACTTGGGTTAAGAATAGGAG
Found at i:37626751 original size:52 final size:52
Alignment explanation
Indices: 37626694--37626797 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
37626684 AAGCTTAAAG
*
37626694 ACTTGAATGGGAATTGGGTGACTGACAATAAAGACATTTGCAATGTGGCTAA
1 ACTTGAATGGGAATTGGGTGACTGACAATAAAGACATTTGCAATATGGCTAA
37626746 ACTTGAATGGGAATTGGGTGACTGACAATAAAGACATTTGCAATATGGCTAA
1 ACTTGAATGGGAATTGGGTGACTGACAATAAAGACATTTGCAATATGGCTAA
37626798 TTAAAGACTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.27
Consensus pattern (52 bp):
ACTTGAATGGGAATTGGGTGACTGACAATAAAGACATTTGCAATATGGCTAA
Found at i:37627180 original size:12 final size:12
Alignment explanation
Indices: 37627165--37627190 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37627155 GTTTATCTAC
37627165 AAGATCATCTCT
1 AAGATCATCTCT
37627177 AAGATCATCTCT
1 AAGATCATCTCT
37627189 AA
1 AA
37627191 TGTTGTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (12 bp):
AAGATCATCTCT
Found at i:37629629 original size:61 final size:61
Alignment explanation
Indices: 37629533--37629652 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 61
37629523 GGGAAATCGT
** *
37629533 GTCCACGTCAGCGTGATGTCAGGGTACGTGGCAGGACATCGCATCCATGTCAGCAGGTCAC
1 GTCCACGTCAGCGTGATGTCAGGGTACGTAACAGGACATCGCATCCACGTCAGCAGGTCAC
* *
37629594 GTCCACGTCAGCGTGATGTCAGGGTACGTAACAGGACATCGCGTCCACGTCAGTAGGTC
1 GTCCACGTCAGCGTGATGTCAGGGTACGTAACAGGACATCGCATCCACGTCAGCAGGTC
37629653 GCGCTGACTG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.20
Consensus pattern (61 bp):
GTCCACGTCAGCGTGATGTCAGGGTACGTAACAGGACATCGCATCCACGTCAGCAGGTCAC
Found at i:37630018 original size:123 final size:123
Alignment explanation
Indices: 37629799--37630023 Score: 380
Period size: 123 Copynumber: 1.8 Consensus size: 123
37629789 ATATTTCGAG
* * *
37629799 TTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTAGTCAAATAGTATAAAATCACTTATACCAAGATGCTATTTGAGAAGAAATTGTG
37629864 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
37629922 TTGACGTTTCTAAG-CAAATAGTATAAAATCACTTATACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTCT-AGTCAAATAGTATAAAATCACTTATACCAAGATGCTATTTGAGAAGAAATTGT
* *
37629986 GAAATCGTGCCCTCGTGGATGCGATTTTGCTACAGTAG
65 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
37630024 CAAGTTTGGG
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
123 94 0.99
124 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTAGTCAAATAGTATAAAATCACTTATACCAAGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
Found at i:37633148 original size:10 final size:10
Alignment explanation
Indices: 37633133--37633157 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37633123 CAAATCTAAC
37633133 ATTATGTAAA
1 ATTATGTAAA
37633143 ATTATGTAAA
1 ATTATGTAAA
37633153 ATTAT
1 ATTAT
37633158 TAAGTCCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:37633242 original size:18 final size:18
Alignment explanation
Indices: 37633219--37633259 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
37633209 TTAGGTTTGG
37633219 GTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAA
37633237 GTTAGGGTTTTTAATTAA
1 GTTAGGGTTTTTAATTAA
*
37633255 ATTAG
1 GTTAG
37633260 CTTAGAGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (18 bp):
GTTAGGGTTTTTAATTAA
Found at i:37633268 original size:29 final size:29
Alignment explanation
Indices: 37633236--37633723 Score: 387
Period size: 29 Copynumber: 15.9 Consensus size: 29
37633226 TTTTTAATTA
*
37633236 AGTTAGGGTTTTTAATTAAATTAGCTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
37633265 AGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37633294 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
37633323 AGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37633352 AGTTAGGGTTTTTAATTAAGTTAAGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTAAATT-AGG---TT-A--G
*
37633388 AGTTA-GGTTAGGGTTT--TT-AATTAAGTTAG
1 AGTTAGGGTT----TTTAATTAAATTAGGTTAG
* ****
37633417 GGTTTTAGGG-TTTT-A-GGGCTTAGGGTTTAG
1 AG--TTAGGGTTTTTAATTAAATTA-GG-TTAG
* * * *
37633447 GGTTTAAGGTTTTTAATTAAGTTAGAGTTTTTAATTA
1 AG-TTAGGGTTTTTAATTAAATTAG-G---TT-A--G
37633484 AGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37633513 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
37633542 AGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
* * * * **
37633571 GGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTT---TTTA----ATTAAATTAGGTT-----AG
37633612 AGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
37633641 GGTTAGGGTTTTTAATTAAATTAAGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37633670 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 AGTTAGGGTTTTTAATTAAATTAGGTTAG
*
37633699 AGTTAGGGTTTTTAATTAAGTTAGG
1 AGTTAGGGTTTTTAATTAAATTAGG
37633724 GTTTTTAATT
Statistics
Matches: 378, Mismatches: 42, Indels: 78
0.76 0.08 0.16
Matches are distributed among these distances:
27 3 0.01
28 3 0.01
29 258 0.68
30 13 0.03
31 8 0.02
32 13 0.03
33 2 0.01
34 13 0.03
35 8 0.02
36 37 0.10
37 3 0.01
38 3 0.01
39 3 0.01
41 11 0.03
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.45
Consensus pattern (29 bp):
AGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:37633275 original size:47 final size:47
Alignment explanation
Indices: 37633219--37633347 Score: 141
Period size: 58 Copynumber: 2.5 Consensus size: 47
37633209 TTAGGTTTGG
37633219 GTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAAATTAGCTTAGA
1 GTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAAATTAGCTTAGA
*
37633266 GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGA
1 GTTAGGG--TTT--TT-AATTA----A--GTTAGGGTTTTTAATTAAATTAGCTTAGA
*
37633324 GTTAGGGTTTTTAATTAAATTAGG
1 GTTAGGGTTTTTAATTAAGTTAGG
37633348 TTAGAGTTAG
Statistics
Matches: 69, Mismatches: 2, Indels: 22
0.74 0.02 0.24
Matches are distributed among these distances:
47 12 0.17
49 4 0.06
51 2 0.03
52 5 0.07
53 5 0.07
54 2 0.03
56 4 0.06
58 35 0.51
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (47 bp):
GTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAAATTAGCTTAGA
Found at i:37633299 original size:58 final size:57
Alignment explanation
Indices: 37633237--37633722 Score: 429
Period size: 58 Copynumber: 8.4 Consensus size: 57
37633227 TTTTAATTAA
37633237 GTTAGGGTTTTTAATTAAATTAGCTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAG-TTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
*
37633295 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGA
1 GTTAGGGTTTTTAATTAAATTA-GTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
*
37633353 GTTAGGGTTTTTAATT--A--AGTT--A---A-GGTTTTTAATTAAGTTAGGTT---
1 GTTAGGGTTTTTAATTAAATTAGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
* * ** ****
37633397 ---AGGGTTTTTAATTAAGTTAG--GGTTTTAGGG-TTTT-A-GGGCTTAGGGTTTAGG
1 GTTAGGGTTTTTAATTAAATTAGTTAGAGTTAGGGTTTTTAATTAAATTA-GG-TTAGG
* * *
37633448 GTTTAAGGTTTTTAATTAAGTTAGAGTTTTTAATTAAGTTAGGGTTTTTAATTAAATTAGGTTAG
1 G-TTAGGGTTTTTAATTAAATT--AG---TT-A--GAGTTAGGGTTTTTAATTAAATTAGGTTAG
37633513 G
57 G
37633514 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 GTTAGGGTTTTTAATTAAATTA-GTTAGAGTTAGGGTTTTTAATT--A--A----A---TTA-GG
37633579 TTAGG
53 TTAGG
37633584 GTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATTAAATTAG-TTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
* *
37633642 GTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGA
1 GTTAGGGTTTTTAATTAAATT-AGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
*
37633700 GTTAGGGTTTTTAATTAAGTTAG
1 GTTAGGGTTTTTAATTAAATTAG
37633723 GGTTTTTAAT
Statistics
Matches: 357, Mismatches: 23, Indels: 97
0.75 0.05 0.20
Matches are distributed among these distances:
41 13 0.04
45 2 0.01
46 3 0.01
47 23 0.06
48 8 0.02
49 2 0.01
51 1 0.00
53 3 0.01
54 1 0.00
55 17 0.05
56 1 0.00
57 4 0.01
58 168 0.47
59 6 0.02
60 2 0.01
61 2 0.01
62 2 0.01
63 1 0.00
64 1 0.00
65 24 0.07
66 12 0.03
67 3 0.01
68 4 0.01
69 4 0.01
70 50 0.14
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.45
Consensus pattern (57 bp):
GTTAGGGTTTTTAATTAAATTAGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGG
Found at i:37633380 original size:47 final size:47
Alignment explanation
Indices: 37633323--37633788 Score: 234
Period size: 47 Copynumber: 9.5 Consensus size: 47
37633313 ATTAGGTTAG
*
37633323 AGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
1 AGTTAAGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
37633370 AGTTAAGGTTTTTAATT--A--A-GTTAG-GTTAGGGTTTTTAATTA
1 AGTTAAGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
* * ** * *
37633411 AGTT-AGGGTTTTAGGGTTTTAGGGCTTAGGGTTTAGGGTTTAAGGTTTTTAATTA
1 AGTTAAGGTTTTTA----ATTA--AATTA-GG-TTAGAG-TTAGGGTTTTTAATTA
* * * * *
37633466 AGTT-AGAGTTTTTAATTAAGTTAGGGTT---TTTA--ATTAAATTAGGTTA
1 AGTTAAG-GTTTTTAATTAAATTA-GGTTAGAGTTAGGGTT--TTTA-ATTA
* *
37633512 GGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
1 -AGTTAAGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
* *** *
37633560 AATT-AGG---TT-A--GGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAA
1 AGTTAAGGTTTTTAATTAAATTA-GGTTAGAGTTAGGGTTTTTAATT--A
*
37633603 TTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA
1 --A-GTT--A---A-GGTTTTTAATTAAATTAGGTTAGAGTTAGGG--TTT--TT-AATTA
37633664 AGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
1 AGTTA-----A-GGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
* * *
37633717 AGTTAGGGTTTTTAATTAAGTTAGGTTAAAGTTAGGGTTTTTAATTA
1 AGTTAAGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
*
37633764 AGTTAGGGTTTTTAATTAAATTAGG
1 AGTTAAGGTTTTTAATTAAATTAGG
37633789 GTTTTTAATT
Statistics
Matches: 331, Mismatches: 36, Indels: 104
0.70 0.08 0.22
Matches are distributed among these distances:
40 11 0.03
41 43 0.13
42 6 0.02
43 6 0.02
44 2 0.01
45 8 0.02
46 11 0.03
47 99 0.30
48 4 0.01
49 8 0.02
50 7 0.02
51 2 0.01
52 5 0.02
53 16 0.05
54 3 0.01
55 21 0.06
56 12 0.04
57 1 0.00
58 52 0.16
59 4 0.01
60 3 0.01
61 1 0.00
62 2 0.01
63 4 0.01
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (47 bp):
AGTTAAGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTA
Found at i:37633397 original size:23 final size:23
Alignment explanation
Indices: 37633312--37633417 Score: 85
Period size: 23 Copynumber: 4.5 Consensus size: 23
37633302 TTTTTAATTA
* *
37633312 AATTAGGTTAGAGTTAGGGTTTTT
1 AATTAAGTTAG-GTTAAGGTTTTT
*
37633336 AATTAAATTAGGTT-AGAGTTAGGGTTT
1 AATTAAGTTAGGTTAAG-GTT----TTT
*
37633363 --TTAA-TTAAGTTAAGGTTTTT
1 AATTAAGTTAGGTTAAGGTTTTT
*
37633383 AATTAAGTTAGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAAGGTTTTT
37633406 AATTAAGTTAGG
1 AATTAAGTTAGG
37633418 GTTTTAGGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
20 3 0.04
22 5 0.07
23 32 0.48
24 18 0.27
25 6 0.09
27 3 0.04
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (23 bp):
AATTAAGTTAGGTTAAGGTTTTT
Found at i:37633426 original size:8 final size:8
Alignment explanation
Indices: 37633413--37633461 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
37633403 TTTAATTAAG
37633413 TTAGGGTT
1 TTAGGGTT
37633421 TTAGGGTT
1 TTAGGGTT
*
37633429 TTAGGG-C
1 TTAGGGTT
37633436 TTAGGG-T
1 TTAGGGTT
37633443 TTAGGGTT
1 TTAGGGTT
* *
37633451 TAAGGTTT
1 TTAGGGTT
37633459 TTA
1 TTA
37633462 ATTAAGTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
7 12 0.34
8 23 0.66
ACGTcount: A:0.16, C:0.02, G:0.35, T:0.47
Consensus pattern (8 bp):
TTAGGGTT
Found at i:37633449 original size:7 final size:7
Alignment explanation
Indices: 37633413--37633458 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
37633403 TTTAATTAAG
37633413 TTAGGGTT
1 TTAGGG-T
37633421 TTAGGGTT
1 TTAGGG-T
*
37633429 TTAGGGC
1 TTAGGGT
37633436 TTAGGGT
1 TTAGGGT
37633443 TTAGGGT
1 TTAGGGT
*
37633450 TTAAGGT
1 TTAGGGT
37633457 TT
1 TT
37633459 TTAATTAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
7 21 0.60
8 14 0.40
ACGTcount: A:0.15, C:0.02, G:0.37, T:0.46
Consensus pattern (7 bp):
TTAGGGT
Found at i:37633508 original size:18 final size:18
Alignment explanation
Indices: 37633352--37633508 Score: 97
Period size: 18 Copynumber: 8.4 Consensus size: 18
37633342 ATTAGGTTAG
37633352 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
*
37633370 AGTTAAGGTTTTTAATTAA
1 AGTTAGGGTTTTTAATT-A
37633389 GTTAGGTTAGGGTTTTTAATTA
1 ---A-GTTAGGGTTTTTAATTA
*
37633411 AGTTAGGG-TTTTAGGGTT-
1 AGTTAGGGTTTTTA--ATTA
*****
37633429 --TTAGGGCTTAGGGTTTA
1 AGTTAGGG-TTTTTAATTA
* *
37633446 GGGTTTAAGGTTTTTAATTA
1 -AG-TTAGGGTTTTTAATTA
*
37633466 AGTTAGAGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
37633484 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
*
37633502 AATTAGG
1 AGTTAGG
37633509 TTAGGGTTAG
Statistics
Matches: 106, Mismatches: 19, Indels: 28
0.69 0.12 0.18
Matches are distributed among these distances:
16 8 0.08
17 5 0.05
18 61 0.58
19 5 0.05
20 5 0.05
21 5 0.05
22 2 0.02
23 15 0.14
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (18 bp):
AGTTAGGGTTTTTAATTA
Found at i:37633576 original size:6 final size:6
Alignment explanation
Indices: 37633565--37633592 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37633555 AATTAAATTA
37633565 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
1 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
37633593 TTTAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (6 bp):
GGTTAG
Found at i:37633589 original size:41 final size:41
Alignment explanation
Indices: 37633536--37633621 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
37633526 AATTAAATTA
*
37633536 GGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
*
37633577 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
1 GGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
37633618 GGTT
1 GGTT
37633622 TTTAATTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (41 bp):
GGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
Found at i:37633596 original size:99 final size:97
Alignment explanation
Indices: 37633285--37633723 Score: 461
Period size: 99 Copynumber: 4.6 Consensus size: 97
37633275 TTTAATTAAA
37633285 TTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTT
1 TTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTT
* ****
37633350 AGAGTTAGGGTTTTTAATTAAGTTAAGGTTTTTAA
65 AGAGTTAGGGTTTTTAATTAAATT-AGG-TTAGGG
* * ****
37633385 TTAAGTTAGGTTAGGGTTTTTAATTAAGTTAGGGTT----TTAGGG-TTTT-A-GGGCTTAGGGT
1 TTAGGTTAGGTTAGGGTTTTTAATTAAATTA-GGTTAGAGTTAGGGTTTTTAATTAAATTA-GG-
* * * *
37633443 TTAGGGTTTAAGGTTTTTAATTAAGTTAGAGTT---T
63 TTAGAG-TTAGGGTTTTTAATTAAATTAG-GTTAGGG
* * *
37633477 TTA-ATTAAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 TTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTA
37633541 GAGTTAGGGTTTTTAATTAAATTAGGTTAGGG
66 GAGTTAGGGTTTTTAATTAAATTAGGTTAGGG
37633573 TTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGT
1 TTA-GGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGT
*
37633638 TAGGGTTAGGGTTTTTAATTAAATTA----A--G
64 TAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGG
*
37633666 TTA-G---GGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGG
1 TTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGG
37633724 GTTTTTAATT
Statistics
Matches: 296, Mismatches: 25, Indels: 49
0.80 0.07 0.13
Matches are distributed among these distances:
87 53 0.18
90 4 0.01
91 25 0.08
92 3 0.01
93 10 0.03
94 29 0.10
95 23 0.08
96 32 0.11
97 3 0.01
98 3 0.01
99 100 0.34
100 11 0.04
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (97 bp):
TTAGGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTA
GAGTTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:37633636 original size:128 final size:131
Alignment explanation
Indices: 37633483--37633770 Score: 456
Period size: 128 Copynumber: 2.2 Consensus size: 131
37633473 GTTTTTAATT
*
37633483 AAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAG
1 AAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGAGTTAG
* **
37633548 GGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TT-A-GGGTTAGGGTTTTTAATTAAATTAGGTT
66 GGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTAATAAGTTAGGGTTTTTAATTAAATTAGGTT
37633610 A
131 A
* *
37633611 GAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAG
1 AAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGAGTTAG
*
37633676 GGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAGTTAGGGTTTTTAATTAAGTTAG
66 GGTTTTTAATTAAATTAGGTTAGAGTTAGGG--TTTAA-TAAGTTAGGGTTTTTAATTAAATTAG
37633741 GTTA
128 GTTA
*
37633745 AAGTTAGGGTTTTTAATTAAGTTAGG
1 AAGTTAGGGTTTTTAATTAAATTAGG
37633771 GTTTTTAATT
Statistics
Matches: 145, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
128 92 0.63
131 2 0.01
132 1 0.01
134 50 0.34
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (131 bp):
AAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGAGTTAG
GGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTAATAAGTTAGGGTTTTTAATTAAATTAGGTT
A
Found at i:37633722 original size:18 final size:18
Alignment explanation
Indices: 37633699--37633813 Score: 172
Period size: 18 Copynumber: 6.8 Consensus size: 18
37633689 ATTAGGTTAG
37633699 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
37633717 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
37633735 AGTTA-GG---TT-A--A
1 AGTTAGGGTTTTTAATTA
37633746 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
37633764 AGTTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
*
37633782 AATTAGGGTTTTTAATTA
1 AGTTAGGGTTTTTAATTA
37633800 AGTTAGGGTTTTTA
1 AGTTAGGGTTTTTA
37633814 TTACATCAAA
Statistics
Matches: 88, Mismatches: 2, Indels: 14
0.85 0.02 0.13
Matches are distributed among these distances:
11 6 0.07
12 2 0.02
13 1 0.01
14 2 0.02
15 2 0.02
16 1 0.01
17 2 0.02
18 72 0.82
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.49
Consensus pattern (18 bp):
AGTTAGGGTTTTTAATTA
Found at i:37633748 original size:29 final size:32
Alignment explanation
Indices: 37633709--37633806 Score: 121
Period size: 29 Copynumber: 3.0 Consensus size: 32
37633699 AGTTAGGGTT
37633709 TTTAATTAAGTTAGGGTTTTTAATTAAGTTAGG
1 TTTAA-TAAGTTAGGGTTTTTAATTAAGTTAGG
37633742 -TT-A-AAGTTAGGGTTTTTAATTAAGTTAGGG
1 TTTAATAAGTTAGGGTTTTTAATTAAGTTA-GG
*
37633772 TTTTTAATTAAATTAGGGTTTTTAATTAAGTTAGG
1 --TTTAA-TAAGTTAGGGTTTTTAATTAAGTTAGG
37633807 GTTTTTATTA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
29 24 0.42
30 2 0.04
31 1 0.02
32 2 0.04
33 2 0.04
34 1 0.02
35 2 0.04
36 23 0.40
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (32 bp):
TTTAATAAGTTAGGGTTTTTAATTAAGTTAGG
Found at i:37633861 original size:25 final size:26
Alignment explanation
Indices: 37633809--37633872 Score: 103
Period size: 25 Copynumber: 2.5 Consensus size: 26
37633799 AAGTTAGGGT
37633809 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATAGAACTTCTA
* *
37633835 TTTTATTATATTAAATA-AACTTCTA
1 TTTTATTACATCAAATAGAACTTCTA
37633860 TTTTATTACATCA
1 TTTTATTACATCA
37633873 GATAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (26 bp):
TTTTATTACATCAAATAGAACTTCTA
Found at i:37636111 original size:28 final size:30
Alignment explanation
Indices: 37636071--37636133 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
37636061 GCCATTGATG
*
37636071 AAAATATAAAAAAATTTAAAATTATTTT-A
1 AAAATATAAAAAAAATTAAAATTATTTTCA
37636100 AAAATAT-AAAAAAATTAAAATTATTTTCA
1 AAAATATAAAAAAAATTAAAATTATTTTCA
37636129 AAAAT
1 AAAAT
37636134 GAAATTGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.59
29 13 0.41
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (30 bp):
AAAATATAAAAAAAATTAAAATTATTTTCA
Found at i:37636112 original size:29 final size:29
Alignment explanation
Indices: 37636071--37636133 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
37636061 GCCATTGATG
37636071 AAAATATAAAAAAATTTAAAATTATTTT-A
1 AAAATATAAAAAAA-TTAAAATTATTTTCA
37636100 AAAATATAAAAAAATTAAAATTATTTTCA
1 AAAATATAAAAAAATTAAAATTATTTTCA
37636129 AAAAT
1 AAAAT
37636134 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 13 0.39
29 20 0.61
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAATATAAAAAAATTAAAATTATTTTCA
Found at i:37636206 original size:50 final size:51
Alignment explanation
Indices: 37636134--37636245 Score: 190
Period size: 50 Copynumber: 2.2 Consensus size: 51
37636124 TTTCAAAAAT
*
37636134 GAAATTGAGGGGAAATTCAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTCAAATTAAATATGGATTTGAGAGAATTTTGGAAG
* *
37636185 GAAATTGA-AGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTCAAATTAAATATGGATTTGAGAGAATTTTGGAAG
37636235 GAAATTGAGAG
1 GAAATTGAGAG
37636246 AATTTTGGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 47 0.82
51 10 0.18
ACGTcount: A:0.42, C:0.01, G:0.29, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTCAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:37636242 original size:22 final size:22
Alignment explanation
Indices: 37636217--37636264 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
37636207 AAATATGGGT
37636217 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37636239 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37636261 TTGA
1 TTGA
37636265 AAGGATTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:37636880 original size:22 final size:21
Alignment explanation
Indices: 37636850--37636901 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
37636840 AAAAGAGCGT
*
37636850 GATTATGAAAAATTTTCTCCAA
1 GATTTTGAAAAA-TTTCTCCAA
**
37636872 GATTTTGAAGCATTTCTCCAA
1 GATTTTGAAAAATTTCTCCAA
37636893 GATTTTGAA
1 GATTTTGAA
37636902 GCATTCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (21 bp):
GATTTTGAAAAATTTCTCCAA
Found at i:37636889 original size:21 final size:21
Alignment explanation
Indices: 37636863--37636906 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
37636853 TATGAAAAAT
37636863 TTTCTCCAAGATTTTGAAGCA
1 TTTCTCCAAGATTTTGAAGCA
37636884 TTTCTCCAAGATTTTGAAGCA
1 TTTCTCCAAGATTTTGAAGCA
37636905 TT
1 TT
37636907 CTATTCTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (21 bp):
TTTCTCCAAGATTTTGAAGCA
Found at i:37638917 original size:17 final size:17
Alignment explanation
Indices: 37638897--37638929 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37638887 GTTATGTTAT
37638897 ATGAAAGGTCAAGAGTC
1 ATGAAAGGTCAAGAGTC
37638914 ATGAAAGGTCAAGAGT
1 ATGAAAGGTCAAGAGT
37638930 TATGTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (17 bp):
ATGAAAGGTCAAGAGTC
Found at i:37643196 original size:17 final size:17
Alignment explanation
Indices: 37643176--37643208 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37643166 GTTATGTTAT
37643176 ATGAAAGGTCAAGAGTC
1 ATGAAAGGTCAAGAGTC
37643193 ATGAAAGGTCAAGAGT
1 ATGAAAGGTCAAGAGT
37643209 TATGTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (17 bp):
ATGAAAGGTCAAGAGTC
Found at i:37649025 original size:27 final size:26
Alignment explanation
Indices: 37648977--37649027 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
37648967 TAGAATTAAT
*
37648977 TTGTTATTCATCATTTGCTTTGTATA
1 TTGTTAATCATCATTTGCTTTGTATA
37649003 TTGTTAATCAATCATGTTG-TTTGTA
1 TTGTTAATC-ATCAT-TTGCTTTGTA
37649028 AGAATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 11 0.50
28 3 0.14
ACGTcount: A:0.22, C:0.10, G:0.14, T:0.55
Consensus pattern (26 bp):
TTGTTAATCATCATTTGCTTTGTATA
Found at i:37661143 original size:44 final size:44
Alignment explanation
Indices: 37661093--37661712 Score: 207
Period size: 44 Copynumber: 13.2 Consensus size: 44
37661083 AGTGTAATGA
*
37661093 AGCAGATTGAAGCTAGTAATCTTATCTCCCTAAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
** * * *
37661137 AGCAGATT-AAAATAAAG-CATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTG-AG--AT--TACAGT-G---G
* * * * **
37661190 CATCAAATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAG
1 -AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* * *
37661235 AGCATATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* ** * *
37661279 AGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT-G-G
* * * *
37661325 TAGATCACATTAGATTGAAGCCAGAAATCTTATCTCCCCGAGATTACAGCGG
1 -AG----C---AGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* * *
37661377 AGTAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* ** * * *
37661421 AGCGGATT-AAAATACAG-GATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTG-AG--AT--TACAGT-G---G
* * * * * *
37661474 CATCAGATTGAAACCAGAAATCTTATCTCTCTGAGATTACAGCGG
1 -AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
* * *
37661519 AGCAGATTGAAGCTAGTAATCCTGTCTCCCTGATATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
** ** * *
37661563 AGTGGATT-AAAATAAAG-GATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 AGCAGATTGAAGCT--AGTAATCTTATCTCCCTGAGA-TTACAGT---G--G
* * * * * * **
37661612 ATCGCATCAGATTGAAACCAGAAATCTTATTTCCCTGATATTATAACGG
1 A--G---CAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
*
37661661 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
37661705 AGCAGATT
1 AGCAGATT
37661713 AAGATAAAGG
Statistics
Matches: 417, Mismatches: 99, Indels: 120
0.66 0.16 0.19
Matches are distributed among these distances:
43 14 0.03
44 234 0.56
45 15 0.04
46 1 0.00
47 8 0.02
48 1 0.00
49 22 0.05
50 2 0.00
51 9 0.02
52 1 0.00
53 15 0.04
54 83 0.20
55 12 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
AGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATTACAGTGG
Found at i:37661357 original size:142 final size:142
Alignment explanation
Indices: 37661093--37661763 Score: 1081
Period size: 142 Copynumber: 4.7 Consensus size: 142
37661083 AGTGTAATGA
* * * * *
37661093 AGCAGATTGAAGCTAGTAATCTTATCTCCCTAAGATTACAGTGGAGCAGATTAAAATAAAGCATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
* * *
37661158 TTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAAATTGAAGCCAGAAATCTTATCTCCCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
*
37661223 AGATTACAGCAG
131 AGATTACAGCGG
*
37661235 AGCATATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
* * * *
37661300 TTATCTCTCTGAAGTTACAGTAGAGTAGATCACATTAGATTGAAGCCAGAAATCTTATCTCCCCG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
37661365 AGATTACAGCGG
131 AGATTACAGCGG
* *
37661377 AGTAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATACAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
* *
37661442 TTATCTCTCTGAAGTTATAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCTCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
37661507 AGATTACAGCGG
131 AGATTACAGCGG
* * * *
37661519 AGCAGATTGAAGCTAGTAATCCTGTCTCCCTGATATTACAGTGGAGTGGATTAAAATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
*
37661584 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATTTCCCTG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
* * *
37661649 ATATTATAACGG
131 AGATTACAGCGG
* * *
37661661 AGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAGATAAAGGATC
1 AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
37661726 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
37661764 GTCTTATCTC
Statistics
Matches: 491, Mismatches: 38, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 491 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (142 bp):
AGCAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATCTCCCTG
AGATTACAGCGG
Found at i:37661785 original size:41 final size:44
Alignment explanation
Indices: 37661683--37661785 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 44
37661673 CTAGTAATCC
*
37661683 TATCTCCCTGAGATTACAGTGGAGCAGATTAAGATAAAGGATCT
1 TATCTCCCTGAGATTACAGTAGAGCAGATTAAGATAAAGGATCT
* * * *
37661727 TATCTCTCTGA-AGTTACAGTAGAGTAGA-T-CGCAT-CAGG-TCT
1 TATCTCCCTGAGA-TTACAGTAGAGCAGATTAAG-ATAAAGGATCT
37661768 TATCTCCCTGAGATTACA
1 TATCTCCCTGAGATTACA
37661786 TTGGAATGGA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
41 18 0.36
42 5 0.10
43 4 0.08
44 23 0.46
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGAGATTACAGTAGAGCAGATTAAGATAAAGGATCT
Found at i:37661785 original size:85 final size:85
Alignment explanation
Indices: 37661683--37661853 Score: 238
Period size: 85 Copynumber: 2.0 Consensus size: 85
37661673 CTAGTAATCC
* * *
37661683 TATCTCCCTGAGATTACAGTGG-A-GCAGATTAAGATAAAGGATCTTATCTCTCTGAAGTTACAG
1 TATCTCCCTGAGATTACAGTGGAATGCACA-GAAGA-AAACGATCTTATCTCTCTGAAGTTACAG
*
37661746 TAGAGTAGATCGCATCAGGTCT
64 TAGAGTAGATCGCATCAAGTCT
* * * *
37661768 TATCTCCCTGAGATTACATTGGAATGGACAGAAGAGACCGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAATGCACAGAAGAAAACGATCTTATCTCTCTGAAGTTACAGTA
37661833 GAGTAGATCGCATCAAGTCT
66 GAGTAGATCGCATCAAGTCT
37661853 T
1 T
37661854 GCCAAGTGGA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 68 0.89
86 5 0.07
87 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAGATTACAGTGGAATGCACAGAAGAAAACGATCTTATCTCTCTGAAGTTACAGTA
GAGTAGATCGCATCAAGTCT
Found at i:37665952 original size:85 final size:85
Alignment explanation
Indices: 37665788--37665954 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 85
37665778 TATATCATTG
* * * * *
37665788 ACAACATAGGCCTTTGGTTGTGCGAGAGCATCGGGTAGCATCGACACCTTGGTGCTTGGACGTGC
1 ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATCGACACCTTGGTGCTTGGACATAC
* *
37665853 GGGAGTCTCAGACACCAGCA
66 GGAAGCCTCAGACACCAGCA
* * *
37665873 ACAATATAGGCCCTTGGTTGCGTGGGAGCATCGGGCAGCATCAGA-ACCTAT-GTGCTTGGACAT
1 ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATC-GACACCT-TGGTGCTTGGACAT
*
37665936 ACGGAAGCCTCGGACACCA
64 ACGGAAGCCTCAGACACCA
37665955 TCAGAAACCT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 66 0.96
86 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.31, T:0.20
Consensus pattern (85 bp):
ACAACATAGGCCCTTGGTTGCGCGAGAGCATCGGGCAGCATCGACACCTTGGTGCTTGGACATAC
GGAAGCCTCAGACACCAGCA
Found at i:37667795 original size:23 final size:19
Alignment explanation
Indices: 37667768--37667822 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 19
37667758 AAATCAAATC
37667768 TCTAAGATTACAGAATCATATA
1 TCTAAGATTACA-AATC--ATA
*
37667790 TTCTAAAGATTACATATCATA
1 -TCT-AAGATTACAAATCATA
37667811 TCTAAGATTACA
1 TCTAAGATTACA
37667823 TATATTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.30
20 3 0.10
21 3 0.10
23 6 0.20
24 9 0.30
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.35
Consensus pattern (19 bp):
TCTAAGATTACAAATCATA
Found at i:37674546 original size:22 final size:22
Alignment explanation
Indices: 37674517--37674575 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
37674507 AAAAGCTATC
37674517 TACAAATCAAATCTTC-AAGAT
1 TACAAATCAAATCTTCAAAGAT
**
37674538 TACAGAATCGTATCTTCTAAAGAT
1 TACA-AATCAAATCTTC-AAAGAT
* *
37674562 TACATATCATATCT
1 TACAAATCAAATCT
37674576 AAGATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 10 0.32
23 8 0.26
24 9 0.29
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (22 bp):
TACAAATCAAATCTTCAAAGAT
Found at i:37679339 original size:28 final size:27
Alignment explanation
Indices: 37679282--37679433 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
37679272 TAAATTGTGC
*
37679282 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
37679309 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
37679337 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37679364 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
37679392 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37679419 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37679434 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:37679346 original size:55 final size:55
Alignment explanation
Indices: 37679282--37679433 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
37679272 TAAATTGTGC
*
37679282 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
37679337 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
37679392 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
37679434 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:37701617 original size:24 final size:24
Alignment explanation
Indices: 37701575--37701622 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
37701565 TTTACTACAA
** *
37701575 TATTGAGTGGCTTGGCCATAACGT
1 TATTGAGTGGCAAGACCATAACGT
37701599 TATTGAGTGGCAAGACCATAACGT
1 TATTGAGTGGCAAGACCATAACGT
37701623 GCAGCTGTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (24 bp):
TATTGAGTGGCAAGACCATAACGT
Found at i:37714665 original size:15 final size:15
Alignment explanation
Indices: 37714647--37714684 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
37714637 CACTATTTAT
37714647 AGTTTCATAATCTAG
1 AGTTTCATAATCTAG
* *
37714662 AGTTTCACATTCTAG
1 AGTTTCATAATCTAG
37714677 AGTTTCAT
1 AGTTTCAT
37714685 TATATAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (15 bp):
AGTTTCATAATCTAG
Found at i:37719472 original size:13 final size:13
Alignment explanation
Indices: 37719456--37719484 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37719446 TCTTGATGAA
37719456 CCTTCATACAAAC
1 CCTTCATACAAAC
37719469 CCTTCATACAAAC
1 CCTTCATACAAAC
37719482 CCT
1 CCT
37719485 ATTTATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.41, G:0.00, T:0.24
Consensus pattern (13 bp):
CCTTCATACAAAC
Found at i:37719532 original size:81 final size:81
Alignment explanation
Indices: 37719397--37719548 Score: 277
Period size: 81 Copynumber: 1.9 Consensus size: 81
37719387 GAGTAAAAAA
* * *
37719397 AAACCCTATTTATTCATCTTTATTACTTATATTTGAGTCAGAATACACTTCTTGATGAACCTTCA
1 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
37719462 TACAAACCCTTCATAC
66 TACAAACCCTTCATAC
37719478 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
1 AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
37719543 TACAAA
66 TACAAA
37719549 ACCCGACCCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
AAACCCTATTTATTCATCTTTAGTACCTATATTTCAGTCAGAATACACTTCTTGATGAACCTTCA
TACAAACCCTTCATAC
Found at i:37729890 original size:68 final size:68
Alignment explanation
Indices: 37729811--37729949 Score: 278
Period size: 68 Copynumber: 2.0 Consensus size: 68
37729801 TATGCATAAT
37729811 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
1 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
37729876 AAC
66 AAC
37729879 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
1 TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
37729944 AAC
66 AAC
37729947 TAT
1 TAT
37729950 TTAGCTCAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 71 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (68 bp):
TATATCATCAACTCAAATAATATACTTACCTTATTTTCATGAACACTTAACTTCACACGTACCTG
AAC
Done.