Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 118 of 222
Found at i:38133208 original size:16 final size:18
Alignment explanation
Indices: 38133187--38133224 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
38133177 AAACCACAAT
38133187 TAATATTA-CAAATTA-A
1 TAATATTATCAAATTACA
*
38133203 TAATATTATCCAATTACA
1 TAATATTATCAAATTACA
38133221 TAAT
1 TAAT
38133225 CAGTAGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATATTATCAAATTACA
Found at i:38137467 original size:17 final size:17
Alignment explanation
Indices: 38137445--38137477 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
38137435 ATTTTTTTTA
38137445 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
38137462 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
38137478 TATACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:38142028 original size:31 final size:31
Alignment explanation
Indices: 38141992--38142053 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
38141982 AGATAATTTT
38141992 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
38142023 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
38142054 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:38148206 original size:31 final size:31
Alignment explanation
Indices: 38148170--38148231 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
38148160 AGATAATTTT
38148170 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
38148201 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
38148232 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:38151774 original size:33 final size:33
Alignment explanation
Indices: 38151737--38151819 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
38151727 CTGTTTTACA
*
38151737 ATTATTTCGTTATTATATTA-TTATT-TTGTTATT
1 ATTATTTCGTTATTATATAACTT-TTATT-TTATT
* * *
38151770 ATTATTTGGATGTTATATAACTTTTATTTTATT
1 ATTATTTCGTTATTATATAACTTTTATTTTATT
*
38151803 ATTAATTTTGTTATTAT
1 ATT-ATTTCGTTATTAT
38151820 TTTAAAGTAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
33 26 0.65
34 14 0.35
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (33 bp):
ATTATTTCGTTATTATATAACTTTTATTTTATT
Found at i:38151783 original size:17 final size:14
Alignment explanation
Indices: 38151752--38151820 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 14
38151742 TTCGTTATTA
38151752 TATTATTATTTTGT
1 TATTATTATTTTGT
38151766 TATTATTATTTGGATGT
1 TATTATTATTT---TGT
38151783 TATATAACTT-TTATT-T
1 TAT-T-A-TTATT-TTGT
38151799 TATTATTAATTTTGT
1 TATTATT-ATTTTGT
38151814 TATTATT
1 TATTATT
38151821 TTAAAGTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 19
0.70 0.00 0.30
Matches are distributed among these distances:
13 2 0.04
14 14 0.31
15 11 0.24
16 4 0.09
17 7 0.16
18 1 0.02
19 3 0.07
20 3 0.07
ACGTcount: A:0.26, C:0.01, G:0.07, T:0.65
Consensus pattern (14 bp):
TATTATTATTTTGT
Found at i:38154554 original size:23 final size:25
Alignment explanation
Indices: 38154501--38154555 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
38154491 TTTTCCCTTC
*
38154501 AATTTTATATAAAAAATTATTTTAA
1 AATTTTATATAAAAAATTATTTGAA
** *
38154526 TCTTTTATTTAAAAAA-T-TTTGAA
1 AATTTTATATAAAAAATTATTTGAA
38154549 AATTTTA
1 AATTTTA
38154556 AACTTGCAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 10 0.42
24 1 0.04
25 13 0.54
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
AATTTTATATAAAAAATTATTTGAA
Found at i:38154711 original size:18 final size:17
Alignment explanation
Indices: 38154677--38154724 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
38154667 ATATTTAATT
38154677 AATATTTTA-AAATTTAA
1 AATATTTTATAAA-TTAA
38154694 AATACTTTTATAAATTAA
1 AATA-TTTTATAAATTAA
38154712 AATATTTT-TAAAT
1 AATATTTTATAAAT
38154725 AATTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.17
17 8 0.28
18 13 0.45
19 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATATTTTATAAATTAA
Found at i:38154744 original size:20 final size:23
Alignment explanation
Indices: 38154721--38154763 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
38154711 AAATATTTTT
38154721 AAAT-AATTTT-T-ATTTTTTAA
1 AAATAAATTTTATAATTTTTTAA
38154741 AAATAAATTTTATAATTTTTTAA
1 AAATAAATTTTATAATTTTTTAA
38154764 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 6 0.30
22 1 0.05
23 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
AAATAAATTTTATAATTTTTTAA
Found at i:38154755 original size:29 final size:30
Alignment explanation
Indices: 38154723--38154779 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
38154713 ATATTTTTAA
* *
38154723 ATAA-TTTTTATTTTTTAAAAATAAATTTT
1 ATAATTTTTTAATTTTAAAAAATAAATTTT
*
38154752 ATAATTTTTTAATTTTAAAAAATTAATT
1 ATAATTTTTTAATTTTAAAAAATAAATT
38154780 AAATGTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (30 bp):
ATAATTTTTTAATTTTAAAAAATAAATTTT
Found at i:38156679 original size:12 final size:11
Alignment explanation
Indices: 38156637--38156693 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
38156627 ATTTAGATTT
* *
38156637 TTTTCTTTTTC
1 TTTTATTTTTA
*
38156648 TTTATATTTCTA
1 TTT-TATTTTTA
*
38156660 TTTCTATTTTTC
1 TTT-TATTTTTA
38156672 TTGTTATTTTTA
1 TT-TTATTTTTA
38156684 TTTTATTTTT
1 TTTTATTTTT
38156694 TAGACTTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
11 11 0.30
12 25 0.68
13 1 0.03
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:38156687 original size:50 final size:50
Alignment explanation
Indices: 38156649--38156747 Score: 130
Period size: 50 Copynumber: 1.9 Consensus size: 50
38156639 TTCTTTTTCT
38156649 TTATAT-TTCTATTTCTATTTTT-CTTGTTATTTTTATTTTATTTTTTAGAC
1 TTATATGTTCTATTT-TATTTTTAC-TGTTATTTTTATTTTATTTTTTAGAC
38156699 TTATATGTTCTATTTTATTTTTACTGTTATTGTTTTATTAATTATTTTT
1 TTATATGTTCTATTTTATTTTTACTGTTA-T-TTTTATT--TTATTTTT
38156748 CTATTTTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
50 18 0.42
51 10 0.23
52 7 0.16
54 8 0.19
ACGTcount: A:0.19, C:0.06, G:0.05, T:0.70
Consensus pattern (50 bp):
TTATATGTTCTATTTTATTTTTACTGTTATTTTTATTTTATTTTTTAGAC
Found at i:38156694 original size:24 final size:24
Alignment explanation
Indices: 38156642--38156693 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
38156632 GATTTTTTTC
38156642 TTTTTCTTTATATTTCTATTTCTA
1 TTTTTCTTTATATTTCTATTTCTA
*
38156666 TTTTTCTTGT-TATTTTTATTT-TA
1 TTTTTCTT-TATATTTCTATTTCTA
38156689 TTTTT
1 TTTTT
38156694 TAGACTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 7 0.27
24 18 0.69
25 1 0.04
ACGTcount: A:0.13, C:0.08, G:0.02, T:0.77
Consensus pattern (24 bp):
TTTTTCTTTATATTTCTATTTCTA
Found at i:38156939 original size:28 final size:30
Alignment explanation
Indices: 38156908--38156968 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
38156898 CTCTCTCTCC
* *
38156908 CTCCTTACCCCTC-C-CTCTTTCCCCCTCT
1 CTCCCTACCCCTCTCTCTCCTTCCCCCTCT
* *
38156936 CTCCCTCCCCCTCTCTCTCCTTCCCTCTCT
1 CTCCCTACCCCTCTCTCTCCTTCCCCCTCT
38156966 CTC
1 CTC
38156969 ACTCACTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 11 0.41
29 1 0.04
30 15 0.56
ACGTcount: A:0.02, C:0.62, G:0.00, T:0.36
Consensus pattern (30 bp):
CTCCCTACCCCTCTCTCTCCTTCCCCCTCT
Found at i:38156944 original size:14 final size:16
Alignment explanation
Indices: 38156902--38156968 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 16
38156892 CTCTCTCTCT
* *
38156902 CTCTCCCTCCTTACCC
1 CTCTCTCTCCTTCCCC
*
38156918 CTC-C-CTCTTTCCCC
1 CTCTCTCTCCTTCCCC
38156932 CTCTCTC-CC-TCCCC
1 CTCTCTCTCCTTCCCC
*
38156946 CTCTCTCTCCTTCCCT
1 CTCTCTCTCCTTCCCC
38156962 CTCTCTC
1 CTCTCTC
38156969 ACTCACTCAC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
14 23 0.53
15 5 0.12
16 15 0.35
ACGTcount: A:0.01, C:0.63, G:0.00, T:0.36
Consensus pattern (16 bp):
CTCTCTCTCCTTCCCC
Found at i:38156951 original size:2 final size:2
Alignment explanation
Indices: 38156932--38157006 Score: 57
Period size: 2 Copynumber: 39.0 Consensus size: 2
38156922 CTCTTTCCCC
* * * * *
38156932 CT CT CT CC CT CC CC CT CT CT CT C- CT -T CC CT CT CT CT CA CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
38156972 CA CT CA CT CA CT CT CT CT CT C- CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
38157007 GTCTTAATCT
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
1 3 0.05
2 53 0.95
ACGTcount: A:0.05, C:0.56, G:0.00, T:0.39
Consensus pattern (2 bp):
CT
Found at i:38161779 original size:26 final size:26
Alignment explanation
Indices: 38161750--38161826 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 26
38161740 AATTTTCAAA
38161750 AGTATGAATTTTGTATTAAATTGAAT
1 AGTATGAATTTTGTATTAAATTGAAT
* *
38161776 AGTAT-AA----ATATTAAA-TGGAT
1 AGTATGAATTTTGTATTAAATTGAAT
**
38161796 TTTATGAATTTTGTATTAAATTGAAT
1 AGTATGAATTTTGTATTAAATTGAAT
38161822 AGTAT
1 AGTAT
38161827 AAATATTAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 7 0.19
21 9 0.24
25 9 0.24
26 12 0.32
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.45
Consensus pattern (26 bp):
AGTATGAATTTTGTATTAAATTGAAT
Found at i:38161789 original size:21 final size:21
Alignment explanation
Indices: 38161763--38161837 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
38161753 ATGAATTTTG
38161763 TATTAAATTGAATAGTATAAA
1 TATTAAATTGAATAGTATAAA
* ** *
38161784 TATTAAA-TGGATTTTATGAATTTTG
1 TATTAAATTGAATAGTAT-AA----A
38161809 TATTAAATTGAATAGTATAAA
1 TATTAAATTGAATAGTATAAA
38161830 TATTAAAT
1 TATTAAAT
38161838 GGATTGAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 7 0.17
21 17 0.43
25 9 0.22
26 7 0.17
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.44
Consensus pattern (21 bp):
TATTAAATTGAATAGTATAAA
Found at i:38161819 original size:46 final size:46
Alignment explanation
Indices: 38161752--38161842 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
38161742 TTTTCAAAAG
38161752 TATGAATTTTGTATTAAATTGAATAGTATAAATATTAAATGGATTT
1 TATGAATTTTGTATTAAATTGAATAGTATAAATATTAAATGGATTT
38161798 TATGAATTTTGTATTAAATTGAATAGTATAAATATTAAATGGATT
1 TATGAATTTTGTATTAAATTGAATAGTATAAATATTAAATGGATT
38161843 GAATTTGCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (46 bp):
TATGAATTTTGTATTAAATTGAATAGTATAAATATTAAATGGATTT
Found at i:38170846 original size:20 final size:20
Alignment explanation
Indices: 38170821--38170858 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
38170811 ACGGAATTTC
*
38170821 ATTTCTCTATTTATCCATCT
1 ATTTCTCCATTTATCCATCT
*
38170841 ATTTCTCCATTTTTCCAT
1 ATTTCTCCATTTATCCAT
38170859 TTCTAACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTCTCCATTTATCCATCT
Found at i:38188662 original size:40 final size:40
Alignment explanation
Indices: 38188614--38188801 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
38188604 GCAAACACAT
* * *
38188614 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38188654 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38188694 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38188734 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38188774 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
38188802 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:38209614 original size:40 final size:40
Alignment explanation
Indices: 38209566--38209753 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
38209556 ACAAACACAT
* * *
38209566 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38209606 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38209646 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38209686 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38209726 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
38209754 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:38210949 original size:29 final size:33
Alignment explanation
Indices: 38210899--38210958 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 33
38210889 CCATATCATA
*
38210899 TTCAGCTATATATACATTTAACATAT-TTCCAT
1 TTCAGCTATATATACATCTAACATATATTCCAT
38210931 TTCAGC-ATATATA-A-CTAACATATATTCC
1 TTCAGCTATATATACATCTAACATATATTCC
38210959 GAAATTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 8 0.31
30 5 0.19
31 7 0.27
32 6 0.23
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (33 bp):
TTCAGCTATATATACATCTAACATATATTCCAT
Found at i:38214747 original size:34 final size:34
Alignment explanation
Indices: 38214709--38214811 Score: 102
Period size: 33 Copynumber: 3.1 Consensus size: 34
38214699 TTAGGGATTT
38214709 TAAAAAATAATTTAGGTTTTAGGGTTTTTTAAAA
1 TAAAAAATAATTTAGGTTTTAGGGTTTTTTAAAA
* * * **
38214743 TAAAATA-AATTAAGGTTTAAGATTTTTTTAAAA
1 TAAAAAATAATTTAGGTTTTAGGGTTTTTTAAAA
* * * * *
38214776 -ATAAATTAAATTAGGGTTTAGGGTTTTTAAAAA
1 TAAAAAATAATTTAGGTTTTAGGGTTTTTTAAAA
38214809 TAA
1 TAA
38214812 TTTTGTATTT
Statistics
Matches: 51, Mismatches: 16, Indels: 4
0.72 0.23 0.06
Matches are distributed among these distances:
32 3 0.06
33 41 0.80
34 7 0.14
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.42
Consensus pattern (34 bp):
TAAAAAATAATTTAGGTTTTAGGGTTTTTTAAAA
Found at i:38214803 original size:33 final size:33
Alignment explanation
Indices: 38214720--38214837 Score: 123
Period size: 34 Copynumber: 3.5 Consensus size: 33
38214710 AAAAAATAAT
* *
38214720 TTAGGTTTTAGGGTTTTTT-AAAATAAAATAAA
1 TTAGGGTTTAGGGTTTTTTAAAAATAAATTAAA
* **
38214752 TTAAGGTTTAAGATTTTTTTAAAAATAAATTAAA
1 TTAGGGTTT-AGGGTTTTTTAAAAATAAATTAAA
* * *
38214786 TTAGGGTTTAGGG-TTTTTAAAAATAATTTTGTAT
1 TTAGGGTTTAGGGTTTTTTAAAAATAA-ATT-AAA
38214820 TTAGGGTTTAGGGTTTTT
1 TTAGGGTTTAGGGTTTTT
38214838 GTAATAGTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
32 20 0.29
33 12 0.17
34 34 0.49
35 4 0.06
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (33 bp):
TTAGGGTTTAGGGTTTTTTAAAAATAAATTAAA
Found at i:38218639 original size:16 final size:16
Alignment explanation
Indices: 38218615--38218645 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38218605 AATATTTGAT
38218615 AATGACTAGCTATTGG
1 AATGACTAGCTATTGG
*
38218631 AATGGCTAGCTATTG
1 AATGACTAGCTATTG
38218646 ACATGCTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
AATGACTAGCTATTGG
Found at i:38230234 original size:14 final size:14
Alignment explanation
Indices: 38230215--38230242 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38230205 TAAAGTTATA
38230215 TTTAATAATTCATT
1 TTTAATAATTCATT
38230229 TTTAATAATTCATT
1 TTTAATAATTCATT
38230243 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:38230712 original size:19 final size:19
Alignment explanation
Indices: 38230690--38230727 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
38230680 TCAATCATCC
38230690 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
38230709 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
38230728 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:38240793 original size:13 final size:13
Alignment explanation
Indices: 38240777--38240806 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
38240767 AACCTAAATG
38240777 AAAAATGAAAAGA
1 AAAAATGAAAAGA
38240790 AAAAATGAAAAGA
1 AAAAATGAAAAGA
38240803 AAAA
1 AAAA
38240807 CCCTAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (13 bp):
AAAAATGAAAAGA
Found at i:38247650 original size:24 final size:25
Alignment explanation
Indices: 38247609--38247655 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
38247599 TTCAGCTTTT
38247609 AACCCAATACTTTATATT-TATTCC
1 AACCCAATACTTTATATTCTATTCC
*
38247633 AACCCAATA-TTTGTTATTCTATT
1 AACCCAATACTTT-ATATTCTATT
38247656 TCCCAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 13 0.65
25 4 0.20
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (25 bp):
AACCCAATACTTTATATTCTATTCC
Found at i:38247989 original size:63 final size:56
Alignment explanation
Indices: 38247867--38247976 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 56
38247857 TTTAGATCTT
* *
38247867 TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGA
1 TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAATGA
* * **
38247923 TTTCATTTCTCCATTTTCATTTTCATTTTGGATAAAAACTTAATCATTTCCAAA
1 TTTCATTT-TACATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAA
38247977 AGTTTGCTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 8 0.17
57 39 0.83
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.46
Consensus pattern (56 bp):
TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAATGA
Found at i:38247998 original size:57 final size:57
Alignment explanation
Indices: 38247867--38247996 Score: 156
Period size: 57 Copynumber: 2.3 Consensus size: 57
38247857 TTTAGATCTT
* * * *
38247867 TTTCATTT-TACATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGA
1 TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAAAGA
* **
38247923 TTTCATTTCTCCATTTTCATTTTCATTTTGGATAAAAACTTAATCATTTCCAAAAG-
1 TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAAAGA
*
38247979 TTTGCTATTTCTCGATTT
1 TTT-C-ATTTCTCCATTT
38247997 CACCATTCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 11 0.17
57 41 0.65
58 11 0.17
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.48
Consensus pattern (57 bp):
TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAATCATTTCCAAAAGA
Found at i:38251713 original size:56 final size:56
Alignment explanation
Indices: 38251627--38251802 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
38251617 ACAAGGGATG
38251627 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
38251683 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
38251739 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
38251795 ATGGGCAA
1 ATGGGCAA
38251803 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:38253069 original size:79 final size:79
Alignment explanation
Indices: 38252977--38253147 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 79
38252967 ATATCTAGAC
* * * **
38252977 TAAGATCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGA
1 TAAGTTCCGAAGGCATTTGTGCGAGATACTATA-ACCAGGCTAAGACCCGAAGGCATTTGAACGA
38253040 GTTA-CTAAATCCGGGT
65 G-TAGCTAAATCC-GGT
* *
38253056 TAAGTTCCGAAGGCATTTGTGCGAGTTACTATAACCAGGCTATGACCCGAAGGCATTTGAACGAG
1 TAAGTTCCGAAGGCATTTGTGCGAGATACTATAACCAGGCTAAGACCCGAAGGCATTTGAACGAG
*
38253121 TAGCTATATCCGGT
66 TAGCTAAATCCGGT
*
38253135 TAAATTCCGAAGG
1 TAAGTTCCGAAGG
38253148 TACGTGATTT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
79 54 0.68
80 26 0.32
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTTCCGAAGGCATTTGTGCGAGATACTATAACCAGGCTAAGACCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:38253121 original size:40 final size:40
Alignment explanation
Indices: 38252934--38253114 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
38252924 ATGATGTCCG
* * * * * *
38252934 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTA
1 GGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAATCCA
* * * * *
38252974 GACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATCCA
*
38253014 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATCCA
* **
38253053 GGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA-CCA
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AATCCA
*
38253093 GGCTATGACCCGAAGGCATTTG
1 GGCTAAGACCCGAAGGCATTTG
38253115 AACGAGTAGC
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 35 0.30
40 72 0.62
41 9 0.08
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:38259004 original size:56 final size:56
Alignment explanation
Indices: 38258918--38259093 Score: 327
Period size: 56 Copynumber: 3.1 Consensus size: 56
38258908 ACAAGGGATG
*
38258918 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAACAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
38258974 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
38259030 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAAT-GAAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAA-AATAAAATAAGAAGC
38259086 ATGGGCAA
1 ATGGGCAA
38259094 TAAACTAATA
Statistics
Matches: 118, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
55 4 0.03
56 114 0.97
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:38260360 original size:79 final size:81
Alignment explanation
Indices: 38260224--38260407 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
38260214 TCGAATGATG
* *
38260224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
38260288 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
38260303 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
38260365 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
38260383 ACC-GGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
38260408 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 7 0.08
79 65 0.71
80 19 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:38260414 original size:39 final size:40
Alignment explanation
Indices: 38260224--38260407 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
38260214 TCGAATGATG
* * * * *
38260224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
38260264 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
38260304 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* *
38260343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AA
*
38260384 -CC-GGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
38260408 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 54 0.44
40 61 0.49
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:38260414 original size:79 final size:78
Alignment explanation
Indices: 38260277--38260440 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 78
38260267 GGACTAAGAT
* **
38260277 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TAGCTA
*
38260341 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* *
38260356 CCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGACCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTAGCT
* *
38260419 ATATCCGGTTAAATT
64 AAATCCGGTTAAATC
38260434 CCGAAGG
1 CCGAAGG
38260441 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
78 24 0.32
79 50 0.68
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:38260438 original size:39 final size:39
Alignment explanation
Indices: 38260235--38260440 Score: 163
Period size: 39 Copynumber: 5.2 Consensus size: 39
38260225 CCGGGCTAAG
* * * *
38260235 TCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGA
1 TCCCGAAGGCATTTGTGC-GAGTTACTATATCCGG-TTAA-A
* *
38260276 T-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCT-AA
1 TCCCGAAGGCATTTGTGCGAGTTACTATA-TCC-GGTTAAA
* * *
38260314 GCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG
1 TCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGTTAAA
* * *
38260354 TCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTATGA
1 TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTA-AA
**
38260394 -CCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAA
1 TCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGTTAAA
*
38260432 TTCCGAAGG
1 TCCCGAAGG
38260441 TACGTGATTT
Statistics
Matches: 136, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
38 4 0.03
39 73 0.54
40 49 0.36
41 10 0.07
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTAAA
Found at i:38262406 original size:14 final size:15
Alignment explanation
Indices: 38262382--38262410 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
38262372 CTACATGATG
38262382 TTTCTTTCTCCTCAT
1 TTTCTTTCTCCTCAT
38262397 TTTC-TTCTCCTCAT
1 TTTCTTTCTCCTCAT
38262411 CTTTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.07, C:0.34, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTCTTTCTCCTCAT
Found at i:38262729 original size:18 final size:19
Alignment explanation
Indices: 38262708--38262758 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
38262698 TCTTTTTCAG
38262708 CAACTTCTTCTT-CAGCAA
1 CAACTTCTTCTTGCAGCAA
*
38262726 CAACTTTCTCTTTTGCAGCAA
1 CAAC-TTCT-TCTTGCAGCAA
38262747 CAACTTCCTTCT
1 CAACTT-CTTCT
38262759 CAACAACAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 4 0.15
19 4 0.15
20 7 0.26
21 12 0.44
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.37
Consensus pattern (19 bp):
CAACTTCTTCTTGCAGCAA
Found at i:38262765 original size:18 final size:18
Alignment explanation
Indices: 38262708--38262766 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 18
38262698 TCTTTTTCAG
38262708 CAACTT-CTTCTTCAGCAA
1 CAACTTCCTTC-TCAGCAA
*
38262726 CAACTTTCTCTTTTGCAGCAA
1 CAAC-TTC-CTTCT-CAGCAA
*
38262747 CAACTTCCTTCTCAACAA
1 CAACTTCCTTCTCAGCAA
38262765 CA
1 CA
38262767 GTGTCCTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 11 0.32
19 6 0.18
20 4 0.12
21 13 0.38
ACGTcount: A:0.29, C:0.34, G:0.05, T:0.32
Consensus pattern (18 bp):
CAACTTCCTTCTCAGCAA
Found at i:38274464 original size:21 final size:21
Alignment explanation
Indices: 38274438--38274480 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
38274428 CTCAACGGGA
38274438 TAGCTGATATGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
*
38274459 TAGCTGATGTGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
38274480 T
1 T
38274481 TGCCATTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
TAGCTGATATGGCCAGTTAAC
Found at i:38275938 original size:17 final size:17
Alignment explanation
Indices: 38275916--38275950 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
38275906 TCTTCTCCAT
38275916 TTTTTCTCTTATTCTTC
1 TTTTTCTCTTATTCTTC
*
38275933 TTTTTCTCTTTTTCTTC
1 TTTTTCTCTTATTCTTC
38275950 T
1 T
38275951 ACTGCCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCTCTTATTCTTC
Found at i:38278043 original size:29 final size:28
Alignment explanation
Indices: 38277971--38278188 Score: 129
Period size: 29 Copynumber: 7.5 Consensus size: 28
38277961 ACGATCATCG
* * *
38277971 ATTATGTAAAGGGATAGCTTCGGCTATCA
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
* * * *
38278000 AATATGAATATGGATAGATTCGACTATCA
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
*
38278029 ATTATGAAAAGGGATGGTGAT-GACCATCA
1 ATTATGAAAAGGGATGGT--TCGACTATCA
** *
38278058 ACCATGAAAAGGGATGGTGAT-GACCATCA
1 ATTATGAAAAGGGATGGT--TCGACTATCA
* * * * * *
38278087 AATACGAAAAGAGATAGCTTCGGCTATCG
1 ATTATGAAAAGGGAT-GGTTCGACTATCA
*
38278116 ATTATGAAAAGGGATGGTGACGA-TCATCA
1 ATTATGAAAAGGGATGGT-TCGACT-ATCA
*
38278145 ATTAATGAAAAGGGATGGTTTCGACCATCGA
1 ATT-ATGAAAAGGGATGG-TTCGACTATC-A
38278176 A-TATGAAAAGGGA
1 ATTATGAAAAGGGA
38278189 CGATTACGAC
Statistics
Matches: 149, Mismatches: 30, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
28 6 0.04
29 116 0.78
30 24 0.16
31 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.24
Consensus pattern (28 bp):
ATTATGAAAAGGGATGGTTCGACTATCA
Found at i:38278087 original size:58 final size:56
Alignment explanation
Indices: 38278020--38278188 Score: 160
Period size: 58 Copynumber: 2.9 Consensus size: 56
38278010 TGGATAGATT
* *
38278020 CGACTATCAATTATGAAAAGGGATGGTGAT-GACCATCAACCATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGATGGT--TCGACCATCAA-TATGAAAAGGGATGGTGA
* * * * * * * *
38278078 TGACCATCAAATACGAAAAGAGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGAT-GGTTCGACCATC-AATATGAAAAGGGATGGTGA
*
38278136 CGATCATCAATTAATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGA
1 CGACCATCAATT-ATGAAAAGGGATGG-TTCGACCATC-AATATGAAAAGGGA
38278189 CGATTACGAC
Statistics
Matches: 87, Mismatches: 19, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
57 1 0.01
58 51 0.59
59 35 0.40
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (56 bp):
CGACCATCAATTATGAAAAGGGATGGTTCGACCATCAATATGAAAAGGGATGGTGA
Found at i:38278124 original size:87 final size:88
Alignment explanation
Indices: 38278012--38278185 Score: 235
Period size: 87 Copynumber: 2.0 Consensus size: 88
38278002 TATGAATATG
* *
38278012 GATAGATTCGACTATCAATTATGAAAAGGGATGGTGATGACCATCAA-CCATGAAAAGGGATGGT
1 GATAGATTCGACTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGT
38278076 GAT-GACCATCAAATACGAAAAGA
66 -ATCGACCATCAAATACGAAAAGA
* * * * *
38278099 GATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGATCATCAATTAATGAAAAGGGATGGT
1 GATAGATTCGACTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGT
* * *
38278164 TTCGACCATCGAATATGAAAAG
66 ATCGACCATCAAATACGAAAAG
38278186 GGACGATTAC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
87 43 0.57
88 32 0.43
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (88 bp):
GATAGATTCGACTATCAATTATGAAAAGGGATGGTGACGACCATCAATCAATGAAAAGGGATGGT
ATCGACCATCAAATACGAAAAGA
Found at i:38278198 original size:29 final size:29
Alignment explanation
Indices: 38278031--38278201 Score: 132
Period size: 29 Copynumber: 5.9 Consensus size: 29
38278021 GACTATCAAT
* *
38278031 TATGAAAAGGGATGGTGATGACCATC-AA
1 TATGAAAAGGGATGGTTACGACCATCGAA
* * * *
38278059 CCATGAAAAGGGATGGTGATGACCATCAAA
1 -TATGAAAAGGGATGGTTACGACCATCGAA
* * * * * *
38278089 TACGAAAAGAGATAGCTT-CGGCTATCGAT
1 TATGAAAAGGGAT-GGTTACGACCATCGAA
* *
38278118 TATGAAAAGGGATGGTGACGATCATC-AA
1 TATGAAAAGGGATGGTTACGACCATCGAA
*
38278146 TTAATGAAAAGGGATGGTTTCGACCATCGAA
1 -T-ATGAAAAGGGATGGTTACGACCATCGAA
* *
38278177 TATGAAAAGGGACGATTACGACCAT
1 TATGAAAAGGGATGGTTACGACCAT
38278202 TGTTTAGCAC
Statistics
Matches: 111, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
28 3 0.03
29 79 0.71
30 27 0.24
31 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTACGACCATCGAA
Found at i:38280592 original size:30 final size:30
Alignment explanation
Indices: 38280558--38280637 Score: 151
Period size: 30 Copynumber: 2.7 Consensus size: 30
38280548 GTGACAAATA
38280558 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
38280588 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
*
38280618 TACGTTAAGTAATGTTTTTG
1 TAGGTTAAGTAATGTTTTTG
38280638 ATGTGATTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.47
Consensus pattern (30 bp):
TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
Found at i:38286871 original size:44 final size:42
Alignment explanation
Indices: 38286798--38286949 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 42
38286788 TGGGATTTCG
* *
38286798 GTATATGATTTTTGTGTAAGACCACGTCTGAGATAGTGGCATC
1 GTATATGA-TTTCGTGTAAGACCATGTCTGAGATAGTGGCATC
* * * * *
38286841 G-ATTTGAGATTTACGTGTAAAACCATGTCTGGGACATTGGCATC
1 GTATAT--GATTT-CGTGTAAGACCATGTCTGAGATAGTGGCATC
* *
38286885 GTATATGATTTCGTGTAAGACCTTGTCTGAGATAGTGGCATT
1 GTATATGATTTCGTGTAAGACCATGTCTGAGATAGTGGCATC
* * *
38286927 GATATTTGATTACATGTAAGACC
1 G-TATATGATTTCGTGTAAGACC
38286950 TCGTCTGGGA
Statistics
Matches: 87, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 29 0.33
43 27 0.31
44 28 0.32
45 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (42 bp):
GTATATGATTTCGTGTAAGACCATGTCTGAGATAGTGGCATC
Found at i:38286913 original size:86 final size:86
Alignment explanation
Indices: 38286798--38286968 Score: 222
Period size: 86 Copynumber: 2.0 Consensus size: 86
38286788 TGGGATTTCG
* *
38286798 GTATATGATTTTTGTGTAAGACCACGTCTGAGATAGTGGCATCGAT-TTGAGATTTACGTGTAAA
1 GTATATGATTTTCGTGTAAGACCACGTCTGAGATAGTGGCATCGATATT-AGA-TTACATGTAAA
38286862 ACCAT-GTCTGGGACATTGGCATC
64 ACC-TCGTCTGGGACATTGGCATC
** * * *
38286885 GTATATGA-TTTCGTGTAAGACCTTGTCTGAGATAGTGGCATTGATATTTGATTACATGTAAGAC
1 GTATATGATTTTCGTGTAAGACCACGTCTGAGATAGTGGCATCGATATTAGATTACATGTAAAAC
*
38286949 CTCGTCTGGGACGTTGGCAT
66 CTCGTCTGGGACATTGGCAT
38286969 TGTACGAGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 1 0.01
85 28 0.38
86 35 0.47
87 10 0.14
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (86 bp):
GTATATGATTTTCGTGTAAGACCACGTCTGAGATAGTGGCATCGATATTAGATTACATGTAAAAC
CTCGTCTGGGACATTGGCATC
Found at i:38286967 original size:43 final size:42
Alignment explanation
Indices: 38286867--38286972 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
38286857 GTAAAACCAT
* * * * *
38286867 GTCTGGGACATTGGCATCGTATATGATTTCGTGTAAGACCTT
1 GTCTGGGACGTTGGCATTGTATATGATTACATGTAAGACCTC
* * *
38286909 GTCTGAGATAG-TGGCATTGATATTTGATTACATGTAAGACCTC
1 GTCTGGGA-CGTTGGCATTG-TATATGATTACATGTAAGACCTC
38286952 GTCTGGGACGTTGGCATTGTA
1 GTCTGGGACGTTGGCATTGTA
38286973 CGAGCTTTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
42 17 0.33
43 34 0.67
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (42 bp):
GTCTGGGACGTTGGCATTGTATATGATTACATGTAAGACCTC
Found at i:38291191 original size:136 final size:136
Alignment explanation
Indices: 38290947--38291219 Score: 501
Period size: 136 Copynumber: 2.0 Consensus size: 136
38290937 ATATTATTGT
* *
38290947 TATTACTCGAGCAGGTAACAGACTAACAACGTTACAACAGAGCCTACAGTACATAAAGGAAAAGA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
*
38291012 GTAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
38291077 AATAGC
131 AATAGC
*
38291083 TATTACTCGAGCAGGTAACAAACTAACAATGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
*
38291148 ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
38291213 AATAGC
131 AATAGC
38291219 T
1 T
38291220 TACATGAAAT
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (136 bp):
TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
ATAAAATGATAATTTTAACATTATGAAGCAGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
AATAGC
Found at i:38291557 original size:21 final size:21
Alignment explanation
Indices: 38291526--38291575 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
38291516 TATATTTAAA
38291526 AATATAAT-AAATTATTAATATT
1 AATA-AATAAAATTATT-ATATT
*
38291548 AATAAATAAAATTATTATTTT
1 AATAAATAAAATTATTATATT
38291569 AATAAAT
1 AATAAAT
38291576 TATTTAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAAATAAAATTATTATATT
Found at i:38300903 original size:53 final size:53
Alignment explanation
Indices: 38300819--38300968 Score: 203
Period size: 53 Copynumber: 2.8 Consensus size: 53
38300809 TGGCATTGAT
* * *
38300819 AGACCATATCGTGTAAGA-TCATAACTGGTGGGTTATGGCATCATATGGGAAGA
1 AGACCATATCGTGTAAGACT-GTAACTGGTGGGTTATGGCATCATATAGAAAGA
* * * *
38300872 AGATCATATCGTGTAAAACTGTAACTGGTGGGTTATGGTATGATATAGAAAGA
1 AGACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCATATAGAAAGA
* *
38300925 AGACCATATCGTGTAAGACTGTAACTTGTAGGTTATGGCATCAT
1 AGACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCAT
38300969 GTGGAAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 82 0.99
54 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (53 bp):
AGACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCATATAGAAAGA
Found at i:38301139 original size:28 final size:28
Alignment explanation
Indices: 38301093--38301352 Score: 261
Period size: 28 Copynumber: 9.3 Consensus size: 28
38301083 CAAGAGAAGA
*
38301093 GAAGCCTTTGTGGCGATCTCTGTTAAAC
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * *
38301121 GAATCATTTGTGGAGATCTCTGTTAATG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
38301149 AAAGCCTTTGTGGTGATCTCTATTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
38301177 AAAGCCTTTGTGGTGATCTCTGTTAAAA
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
38301205 GAAGCCTTTGTGGCGAGCTTTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
38301233 GAATCCTTTGTGGCCATCTCCGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
38301261 GAAGCATTTGTGGCAATCTCTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * * *
38301289 GAAGCCTTTGTTGCGATATCTATAAAAT
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * *
38301317 AAAGCCTTTGTGGCTATCTTTG-AAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
38301344 GAATGCCTT
1 GAA-GCCTT
38301353 CATGGTGCAG
Statistics
Matches: 189, Mismatches: 42, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 6 0.03
28 183 0.97
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (28 bp):
GAAGCCTTTGTGGCGATCTCTGTTAAAG
Found at i:38304309 original size:21 final size:20
Alignment explanation
Indices: 38304283--38304326 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
38304273 CGGGTACTCA
38304283 AAATTTTTTTCAAAAAATATT
1 AAATTTTTTT-AAAAAATATT
*
38304304 AAATTTTTTTGAAAAATATT
1 AAATTTTTTTAAAAAATATT
38304324 AAA
1 AAA
38304327 AATTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
AAATTTTTTTAAAAAATATT
Found at i:38304312 original size:20 final size:20
Alignment explanation
Indices: 38304287--38304336 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
38304277 TACTCAAAAT
38304287 TTTTTTCAAAAAATATTAAA
1 TTTTTTCAAAAAATATTAAA
**
38304307 TTTTTTTGAAAAATATTAAA
1 TTTTTTCAAAAAATATTAAA
**
38304327 AATTTTCAAA
1 TTTTTTCAAA
38304337 GGTGCAGGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (20 bp):
TTTTTTCAAAAAATATTAAA
Found at i:38307265 original size:22 final size:22
Alignment explanation
Indices: 38307240--38307295 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
38307230 TGATGAAGGT
*
38307240 GATATCGCGATACCCT-GAAGAG
1 GATATTGCGATA-CCTAGAAGAG
*
38307262 GATATTGTGATACCTAGAAGAG
1 GATATTGCGATACCTAGAAGAG
38307284 GATATTGCGATA
1 GATATTGCGATA
38307296 TCTTGGGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (22 bp):
GATATTGCGATACCTAGAAGAG
Found at i:38308419 original size:18 final size:17
Alignment explanation
Indices: 38308398--38308434 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
38308388 TGATCCTCAC
*
38308398 TTTTCTTTCTTTCATTTT
1 TTTTCTTTCTCTC-TTTT
38308416 TTTTCTTTCTCTCTTTT
1 TTTTCTTTCTCTCTTTT
38308433 TT
1 TT
38308435 CAAGCATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTCTTTCTCTCTTTT
Found at i:38315471 original size:9 final size:9
Alignment explanation
Indices: 38315457--38315498 Score: 59
Period size: 9 Copynumber: 4.6 Consensus size: 9
38315447 AAGGAGTCTG
38315457 TGCATAAGT
1 TGCATAAGT
38315466 TGCATAAGT
1 TGCATAAGT
38315475 TGCATGAA-T
1 TGCAT-AAGT
38315484 TGCATAAGT
1 TGCATAAGT
38315493 CTGCAT
1 -TGCAT
38315499 GTCGAGTCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.07
9 21 0.70
10 7 0.23
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (9 bp):
TGCATAAGT
Found at i:38315737 original size:54 final size:54
Alignment explanation
Indices: 38315574--38315781 Score: 222
Period size: 54 Copynumber: 3.8 Consensus size: 54
38315564 GCCATGGTAA
* * * * * * *
38315574 GAAGACCGTATAGTGTAAAACCTAGTCTAGGATTATGGCATCATATAGAGA-AGT
1 GAAGACCGCATAGTGTAAGACCTAGTTTGGGACTATGGCATCATATGGGGATA-T
* ** * *
38315628 GGAGACCATATAGTGTAAGACCTA-TTCATGGTGGCTATTGCATCATATGGGGATAT
1 GAAGACCGCATAGTGTAAGACCTAGTT--TGG-GACTATGGCATCATATGGGGATAT
* *
38315684 GAAGACCGCATATTGTAAGACCTAGTTTGGGACTATGGCATCATGTGGGGATAT
1 GAAGACCGCATAGTGTAAGACCTAGTTTGGGACTATGGCATCATATGGGGATAT
* *
38315738 GAAGACCGCATATTGTAAGACCTAGTTTGGGACTATGGCGTCAT
1 GAAGACCGCATAGTGTAAGACCTAGTTTGGGACTATGGCATCAT
38315782 GTGCGAAAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 85 0.65
55 5 0.04
56 37 0.28
57 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (54 bp):
GAAGACCGCATAGTGTAAGACCTAGTTTGGGACTATGGCATCATATGGGGATAT
Found at i:38316052 original size:29 final size:28
Alignment explanation
Indices: 38316017--38316089 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
38316007 TAAAGTGGAT
*
38316017 GCCTTTGTGGCTGATTCTAT-TTTATGAGA
1 GCCTTTGTGGCTGATT-T-TGTGTATGAGA
38316046 GCCTTTGTGGCTGATTTTGTGTATGAGA
1 GCCTTTGTGGCTGATTTTGTGTATGAGA
* *
38316074 ACCCTTGTGGCTGATT
1 GCCTTTGTGGCTGATT
38316090 ATGTTGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 23 0.57
29 16 0.40
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.42
Consensus pattern (28 bp):
GCCTTTGTGGCTGATTTTGTGTATGAGA
Found at i:38330389 original size:14 final size:14
Alignment explanation
Indices: 38330366--38330400 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
38330356 TTATTTTTAA
*
38330366 TATATGTATATTTT
1 TATATATATATTTT
38330380 TATATATATATTTT
1 TATATATATATTTT
38330394 TA-ATATA
1 TATATATA
38330401 CTTACATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (14 bp):
TATATATATATTTT
Found at i:38330752 original size:14 final size:16
Alignment explanation
Indices: 38330720--38330755 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
38330710 ATACACATAC
38330720 ATATACATACTTTTAT
1 ATATACATACTTTTAT
**
38330736 ATATACATGTTTTTAT
1 ATATACATACTTTTAT
38330752 ATAT
1 ATAT
38330756 TTCTATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATACATACTTTTAT
Found at i:38330998 original size:16 final size:16
Alignment explanation
Indices: 38330977--38331010 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
38330967 AGTTTTTGCC
38330977 TGTTTATCATTTGTCA
1 TGTTTATCATTTGTCA
38330993 TGTTTATCATTTGTCA
1 TGTTTATCATTTGTCA
38331009 TG
1 TG
38331011 ATGTCTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (16 bp):
TGTTTATCATTTGTCA
Found at i:38330999 original size:67 final size:67
Alignment explanation
Indices: 38330854--38330988 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
38330844 TTTGTTAGTC
*
38330854 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTATCTGTTTATCA
1 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTACCTGTTTATCA
38330919 TT
66 TT
*
38330921 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTGCCTGTTTATCA
1 TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTACCTGTTTATCA
38330986 TT
66 TT
38330988 T
1 T
38330989 GTCATGTTTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.13, C:0.10, G:0.14, T:0.64
Consensus pattern (67 bp):
TTGTTCGTTTATTTATGTACATGTTTGTTATTGTTTTTCTTGCTTTAGTTTTTACCTGTTTATCA
TT
Found at i:38331474 original size:109 final size:109
Alignment explanation
Indices: 38331342--38331662 Score: 468
Period size: 109 Copynumber: 3.0 Consensus size: 109
38331332 ATTTTTTCTA
* *
38331342 AAAAATTTCAAAATAAGGTAATGTTTTGCGTTTAGAAATTCAAGGAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGGAAACATGCCCTAAGGTGCTG
*
38331407 GGTGTCGATTTTTCTCGTTCGACCAAATAGCTAAATATCCTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
* * * * *
38331451 AAAAATTTCAAAATAATGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGTTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGGAAACATGCCCTAAGGTGCTG
*
38331516 GGTGTTGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
* * *
38331560 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGATG-AACGTGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGGAAACATGCCCTAAGGTGCTG
* * * * *
38331624 GGTTTCGA--TTTCTCGTTTAACTAAATTGCCAAATATCCT
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCT
38331663 CTTGAATTTT
Statistics
Matches: 189, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
106 27 0.14
108 22 0.12
109 140 0.74
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (109 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGGAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTC
Found at i:38335462 original size:37 final size:40
Alignment explanation
Indices: 38335380--38335464 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
38335370 TATTTTTATT
* *
38335380 AATTCATATTTTAATAATAATTACATTAAGAATGTATTATTA
1 AATT-ATATTTTAATAATAATTACATTAAGAA-GTATGATAA
*
38335422 AATTATA-TTTAATAATAATTATATTAA-AA-TATGATAA
1 AATTATATTTTAATAATAATTACATTAAGAAGTATGATAA
38335459 AATTAT
1 AATTAT
38335465 TTATTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
37 12 0.30
39 2 0.05
40 19 0.47
41 3 0.08
42 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (40 bp):
AATTATATTTTAATAATAATTACATTAAGAAGTATGATAA
Found at i:38346110 original size:322 final size:324
Alignment explanation
Indices: 38345523--38346175 Score: 1184
Period size: 322 Copynumber: 2.0 Consensus size: 324
38345513 TTATAAAAGC
* *
38345523 TTATCATATAATATTGATGCTTAAAAGTTTGTGTAAAGAATTTTACAATATCATAATACCCTGGT
1 TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
38345588 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAAAAAGAAGAAAGAGGACATGAAT
66 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAAAAAGAAGAAAGAGGACATGAAT
* * *
38345653 TTGGAACATCATAAATATGGTGGAAGCAATAAACTGAATGCACCCAGTGGGTTAGCATAAGACTC
131 TTGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTC
* *
38345718 CTACTTTGTTATCTTTACGGCCTTCTCAATTATCCATACCAATAAACATAATTTTACATAGGAAT
196 CTACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAAT
38345783 ACTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTAAT
261 ACTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTAAT
* * *
38345847 TTATCATATAACATTGATGCTTAAAGGTTTGTGTAAAGAAGTTTACTATATCATAATACTCTGGT
1 TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
*
38345912 ATATAGATTAAGAACTTTGGGTCTTAAAAGAAGTAC-AAAAAAAAA-AAGAAAGAGGACATGAAT
66 ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAAAAAGAAGAAAGAGGACATGAAT
38345975 TTGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTC
131 TTGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTC
*
38346040 CTACTTCGTTATCTTTATGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAAT
196 CTACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAAT
38346105 ACTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTAAT
261 ACTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTAAT
38346169 TTATCAT
1 TTATCAT
38346176 TTATCACTAT
Statistics
Matches: 317, Mismatches: 12, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
322 213 0.67
323 9 0.03
324 95 0.30
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (324 bp):
TTATCATATAACATTGATGCTTAAAAGTTTGTGTAAAGAAGTTTACAATATCATAATACCCTGGT
ATATAGATTAAGAACTTTGGGTATTAAAAGAAGTACAAAAAAAAAAGAAGAAAGAGGACATGAAT
TTGAAACATCATAAATATGGTGGAAGCAATAAACCGAATGCACCCAGTAGGTTAGCATAAGACTC
CTACTTCGTTATCTTTACGGCCTTCACAATTATCCATACCAATAAACATAATTTTACATAGGAAT
ACTAGTAACCAAGCTGAATCTCCTTTTATCTGCTTGCAAACCACCAAATCAAAGTGAATGTAAT
Found at i:38346260 original size:25 final size:25
Alignment explanation
Indices: 38346232--38346282 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
38346222 GGACCTAAGC
38346232 ATGCATTTCAGCCTTCTCATATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
*
38346257 ATGCATTTCAGCCTTCTCGTATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
38346282 A
1 A
38346283 ACTTCTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.43
Consensus pattern (25 bp):
ATGCATTTCAGCCTTCTCATATGTT
Found at i:38348422 original size:18 final size:20
Alignment explanation
Indices: 38348399--38348439 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
38348389 AATTAAAAAC
*
38348399 TATAATGTAA-ATAT-ATTT
1 TATAATATAAGATATAATTT
38348417 TATAATATAAGATATAATTT
1 TATAATATAAGATATAATTT
38348437 TAT
1 TAT
38348440 TTAGTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TATAATATAAGATATAATTT
Found at i:38348524 original size:24 final size:24
Alignment explanation
Indices: 38348490--38348535 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
38348480 GTTTAACTAC
*
38348490 ATGCATGTAATTTTAGTCTTACTT
1 ATGCATATAATTTTAGTCTTACTT
38348514 ATGCATATAATTTTAGTCTTAC
1 ATGCATATAATTTTAGTCTTAC
38348536 AAGTGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.48
Consensus pattern (24 bp):
ATGCATATAATTTTAGTCTTACTT
Found at i:38349225 original size:151 final size:149
Alignment explanation
Indices: 38348984--38349268 Score: 346
Period size: 151 Copynumber: 1.9 Consensus size: 149
38348974 ACCTAAAGCT
* * * * *
38348984 TAAACTTGTAACTAATTTTATAGTAGATTATAATATACACAATCAATATCATATAATTAAGATAG
1 TAAACTTGTAACTAATCTTATAGTAAAATATAATATACACAAACAATATCATATAATTAAGATAA
* * * * **
38349049 ATTATTAATGATATGCATCACTATATATAACTATGTTCTATGTTATTATAATATATGT-TTTATA
66 ATTATTAATGATATGAACCACTATATAT-AC-A--AT-TATGATATTATAATATACATATTTATA
38349113 TTAATGATATGCACGCTTAAACCC
126 TTAATGATATGCACGCTTAAACCC
* * *
38349137 TAAACTTGTAACTAA-CTTATGGTAAAATA-AATTATATACAAACAATAT-ATATAATTAAGGTA
1 TAAACTTGTAACTAATCTTATAGTAAAATATAA-TATACACAAACAATATCATATAATTAAGATA
38349199 AATTATTAATGATATGTAACCA-TATATATACAATTATGATATTATAATATACATATTTATATTA
65 AATTATTAATGATATG-AACCACTATATATACAATTATGATATTATAATATACATATTTATATTA
38349263 ATGATA
129 ATGATA
38349269 CACAACATTA
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
146 17 0.15
147 16 0.14
149 1 0.01
150 2 0.02
151 37 0.32
152 27 0.23
153 15 0.13
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.40
Consensus pattern (149 bp):
TAAACTTGTAACTAATCTTATAGTAAAATATAATATACACAAACAATATCATATAATTAAGATAA
ATTATTAATGATATGAACCACTATATATACAATTATGATATTATAATATACATATTTATATTAAT
GATATGCACGCTTAAACCC
Found at i:38349300 original size:147 final size:152
Alignment explanation
Indices: 38349016--38349301 Score: 331
Period size: 151 Copynumber: 1.9 Consensus size: 152
38349006 GTAGATTATA
* * *
38349016 ATATACACAATCAATATCATATAATTAAGATAGATTATTAATGATATGCATCACTATATATAACT
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
* * ** * * *
38349081 ATGTTCTATGTTATTATAATATATGTTTTATATTAATGATATGCACGCTTAAACCCTAAACTTGT
66 A-GATCTATGATATTATAATATACATTTTATATTAATGATA-GCACACTTAAACCCTAAAATTGC
38349146 AACTAACTTATGGTAAAATAAATT
129 AACTAACTTATGGTAAAATAAATT
*
38349170 ATATACA-AA-CAATAT-ATATAATTAAGGTAAATTATTAATGATATGTAACCA-TATATAT-AC
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATG-AACCACTATATATAAC
38349230 -A-AT-TATGATATTATAATATACATATTTATATTAATGATA-CACAACATTAAACCC-AAAATG
65 TAGATCTATGATATTATAATATACAT-TTTATATTAATGATAGCAC-AC-TTAAACCCTAAAAT-
*
38349290 TGCAATTAACTT
126 TGCAACTAACTT
38349302 CATGATACAT
Statistics
Matches: 115, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
145 3 0.03
146 22 0.19
147 34 0.30
149 1 0.01
150 2 0.02
151 35 0.30
152 9 0.08
153 2 0.02
154 7 0.06
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (152 bp):
ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
AGATCTATGATATTATAATATACATTTTATATTAATGATAGCACACTTAAACCCTAAAATTGCAA
CTAACTTATGGTAAAATAAATT
Found at i:38363544 original size:42 final size:42
Alignment explanation
Indices: 38363485--38363572 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
38363475 TGTGGAGGTC
*
38363485 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
*
38363527 CATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
38363569 CATT
1 CATT
38363573 GTATATGAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (42 bp):
CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
Found at i:38364761 original size:22 final size:23
Alignment explanation
Indices: 38364735--38364785 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
38364725 TTTTTAGTCA
38364735 TTTTAAAAG-AAAAGTTTGAAT-T
1 TTTTAAAAGCAAAAGTTTG-ATCT
*
38364757 TTTT-AAAGCAAAATTTTGATCT
1 TTTTAAAAGCAAAAGTTTGATCT
38364779 TTTTAAA
1 TTTTAAA
38364786 CTATTTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.24
22 17 0.68
23 2 0.08
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (23 bp):
TTTTAAAAGCAAAAGTTTGATCT
Found at i:38366919 original size:20 final size:22
Alignment explanation
Indices: 38366875--38366924 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 22
38366865 GGTTTTTTAG
38366875 TATTTGTGCATATTAGATGTATT
1 TATTTGTGCA-ATTAGATGTATT
*
38366898 TATTTGTGC-ATT-GATTTATT
1 TATTTGTGCAATTAGATGTATT
*
38366918 TAATTGT
1 TATTTGT
38366925 CTAATGTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 13 0.52
21 3 0.12
23 9 0.36
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (22 bp):
TATTTGTGCAATTAGATGTATT
Found at i:38385621 original size:17 final size:17
Alignment explanation
Indices: 38385599--38385632 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
38385589 TTCTTAAATC
38385599 AAGAAAA-AAAGAAAAAA
1 AAGAAAACAAA-AAAAAA
38385616 AAGAAAACAAAAAAAAA
1 AAGAAAACAAAAAAAAA
38385633 CCAAAAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (17 bp):
AAGAAAACAAAAAAAAA
Found at i:38386099 original size:42 final size:42
Alignment explanation
Indices: 38386034--38386345 Score: 340
Period size: 42 Copynumber: 7.2 Consensus size: 42
38386024 GAAAACATTT
* * *
38386034 ATTGCATTTAGAGGCCTAGGTGTGGAGACCCATTTTCTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTACTTTTC
* *
38386076 ATTGCATTTAGAGGCCCAAGTGTGGATG-TTCATTTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGA-GATCCATTT-ACTTTTC
* * * *
38386119 ATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTACTTTTC
* * * *
38386161 ATTTCATTGAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTACTTTTC
* *
38386203 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTCTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTACTTTTC
* * *
38386245 ATTACATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTTATTGC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTA--C-TT-TT-C
38386292 ATTTAGAGCATTTAGAGGCCCAGGTGTGGAGGA-CCATTTACTTTTC
1 A-TT---GCATTTAGAGGCCCAGGTGTGGA-GATCCATTTACTTTTC
38386338 ATTGCATT
1 ATTGCATT
38386346 GTATATGAAG
Statistics
Matches: 231, Mismatches: 26, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
42 150 0.65
43 35 0.15
44 1 0.00
45 3 0.01
46 4 0.02
47 4 0.02
48 4 0.02
49 1 0.00
51 27 0.12
52 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
ATTGCATTTAGAGGCCCAGGTGTGGAGATCCATTTACTTTTC
Found at i:38386329 original size:51 final size:51
Alignment explanation
Indices: 38386249--38386345 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
38386239 CTCTTCATTA
*
38386249 CATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTT-ATTGCATTTAGAG
1 CATTTAGAGGCCCAGGTGTGGAGATCCATTCACT-TTTCATTGCATTTAGAG
*
38386300 CATTTAGAGGCCCAGGTGTGGAGGA-CCATTTACTTTTCATTGCATT
1 CATTTAGAGGCCCAGGTGTGGA-GATCCATTCACTTTTCATTGCATT
38386346 GTATATGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 3 0.07
51 37 0.88
52 2 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (51 bp):
CATTTAGAGGCCCAGGTGTGGAGATCCATTCACTTTTCATTGCATTTAGAG
Found at i:38387330 original size:145 final size:144
Alignment explanation
Indices: 38387145--38387589 Score: 479
Period size: 145 Copynumber: 3.0 Consensus size: 144
38387135 AAAAGTTTTG
*
38387145 ATTTTTTTAA-AAGAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTA
1 ATTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTA
* * *
38387209 AAGAAAAATTTATAATTTTAAAACAAAGTTTTGATTTTTCTCAACTATTTCAAAATAAAAGCTTT
66 AAGAAAAGTTTATAATTTTAAAACAAAATTTTGATTTTT-TCAACTATTTCAAAATAAAA-ATTT
38387274 GATCTTTAAAAAAA-T
129 GATCTTTAAAAAAAGT
* * *
38387289 ATTTTTTAAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATATATTTTAGTCATTTTA
1 ATTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTA
* *** * *
38387354 AAGGAAAGTTT-TAATTTTTAAAA-ATTTTTTTAATTTTTTTCAACTAGTTCAAAATAAAATATT
66 AAGAAAAGTTTATAA-TTTTAAAACAAAATTTTGA-TTTTTTCAACTATTTCAAAATAAAA-ATT
38387417 TGATCTTTAAGAAAAATGGTGT
128 TGATCTTTAA-AAAAA----GT
* ** * *
38387439 TTTTCTTTCTTTGAAAAAGGAGAAAGTTTAGATTTT-TAAAATAAAAATAAGTTTTTTTAGTCAT
1 ATTT-TTT-TAAGAAAAA-GAGAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTAGTCAT
* *
38387503 TTTAAAGGAAAAGTTTGA-ATTTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAA
62 TTTAAA-GAAAAGTTT-ATA-ATTTTAAAACAAAATTTTGAT-TTTTTCAACTATTTCAAAATAA
* * *
38387567 AATTTTGATTTTTAAGAAAAGT
123 AAATTTGATCTTTAAAAAAAGT
38387589 A
1 A
38387590 ATGATCTTTT
Statistics
Matches: 249, Mismatches: 33, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
144 49 0.20
145 78 0.31
150 6 0.02
151 3 0.01
152 18 0.07
153 34 0.14
154 12 0.05
155 21 0.08
156 28 0.11
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.42
Consensus pattern (144 bp):
ATTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATTTTA
AAGAAAAGTTTATAATTTTAAAACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAAATTTGA
TCTTTAAAAAAAGT
Found at i:38388216 original size:22 final size:21
Alignment explanation
Indices: 38388171--38388225 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
38388161 CACTTGTATA
*
38388171 ATTTTTATTTATTCTTCTTTC
1 ATTTTTATTTATTCTTCTTCC
38388192 ATTTTTATTTATT-TTCATGTCC
1 ATTTTTATTTATTCTTC-T-TCC
*
38388214 ATTTATATTTAT
1 ATTTTTATTTAT
38388226 GTTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 14 0.47
22 13 0.43
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTTATTTATTCTTCTTCC
Found at i:38390649 original size:50 final size:48
Alignment explanation
Indices: 38390591--38390734 Score: 180
Period size: 50 Copynumber: 2.9 Consensus size: 48
38390581 AAAGTGAAAG
38390591 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-A
* * *
38390640 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGA
1 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA
* * * *
38390689 TAGTTTCGATCATGTGTGTAGTACTATGTGCAGGCTACTACATGTA
1 T-G-AT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
38390735 TCAGATGGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
49 6 0.07
50 41 0.51
51 34 0.42
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA
Found at i:38390758 original size:51 final size:50
Alignment explanation
Indices: 38390602--38390779 Score: 166
Period size: 51 Copynumber: 3.5 Consensus size: 50
38390592 GATGGTCACG
* **
38390602 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-AGGT-CACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAG-ATGATAATTTCCACA
* * * * *
38390652 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCG--GATAGTTTCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATGATAATTTCCA-CA
* *
38390701 TGTGTGTAGTACTATGTGCAGGCTACTACATGTATCAGATGGTAATTTCCACA
1 --TGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGATGATAATTTCCACA
* *
38390754 TGTGTAGTACTATGTGTAAGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
38390780 TGTGAACCGA
Statistics
Matches: 104, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
46 3 0.03
47 1 0.01
48 1 0.01
49 4 0.04
50 30 0.29
51 53 0.51
52 2 0.02
53 2 0.02
54 8 0.08
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACAGATGATAATTTCCACA
Found at i:38390855 original size:45 final size:45
Alignment explanation
Indices: 38390785--38390879 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
38390775 TACTATGTGA
* * * *
38390785 ACCGAACATCATTGATTAGTGAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
*
38390830 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
38390875 ACCGA
1 ACCGA
38390880 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
Found at i:38398625 original size:50 final size:50
Alignment explanation
Indices: 38398562--38398852 Score: 300
Period size: 50 Copynumber: 5.8 Consensus size: 50
38398552 GTTTGGGTAA
* * * *
38398562 AGAGATCCCATGTAAGACCATGTCTGGGACATGACGTTGGCATCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
* * *
38398612 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGTACCGCGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
*
38398662 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
* * * * *
38398712 AGATGTCCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
** * * * * * * * *
38398762 AGAACTCTCATGTAAGACCATATTTGGGATATGGCATTGGTA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGAAG
* ** *
38398811 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
38398853 TGTTATTATT
Statistics
Matches: 204, Mismatches: 34, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.00
49 38 0.19
50 164 0.80
51 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAAG
Found at i:38400911 original size:27 final size:27
Alignment explanation
Indices: 38400868--38400937 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
38400858 AACTACCATG
*
38400868 TGTTTACTATCAC-GACAAAATACCACA
1 TGTTTACTGTC-CTGACAAAATACCACA
* * ** *
38400895 TGTTTACTGTCCTGACAGACTTTCACG
1 TGTTTACTGTCCTGACAAAATACCACA
38400922 TGTTTACTGTCCTGAC
1 TGTTTACTGTCCTGAC
38400938 GGACCACCCC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (27 bp):
TGTTTACTGTCCTGACAAAATACCACA
Found at i:38405294 original size:22 final size:21
Alignment explanation
Indices: 38405252--38405299 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
38405242 AGGGAGCATT
**
38405252 CAACCATCAATGTCATGACAA
1 CAACCATCAATGTCACAACAA
*
38405273 CAACCACTCAATGTCGCAACAA
1 CAACCA-TCAATGTCACAACAA
*
38405295 AAACC
1 CAACC
38405300 TTTGAACCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.44, C:0.33, G:0.08, T:0.15
Consensus pattern (21 bp):
CAACCATCAATGTCACAACAA
Found at i:38406229 original size:56 final size:56
Alignment explanation
Indices: 38406164--38406283 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
38406154 ACAAGGGATG
38406164 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
38406220 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
38406276 ATGGGCAA
1 ATGGGCAA
38406284 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:38407518 original size:39 final size:40
Alignment explanation
Indices: 38407410--38407594 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
38407400 TCGAATGATG
* * * *
38407410 TCCGGGCTAAGTCCCGAGGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
38407449 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
38407490 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
38407529 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
38407568 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
38407595 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:38407616 original size:79 final size:79
Alignment explanation
Indices: 38407463--38407627 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
38407453 GGACTAAGAT
* **
38407463 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
38407528 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
38407542 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
38407605 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
38407621 CCGAAGG
1 CCGAAGG
38407628 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:38412334 original size:49 final size:49
Alignment explanation
Indices: 38412272--38412372 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 49
38412262 CTAATCATGC
* * *
38412272 TATACAATGCTAAACTTGGTCTTCCACAGTCTACACTGTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACAGTCTACACTCTTATCACTATT
* *
38412321 TATACATTCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACAGTCTACACTCTTATCACTATT
38412370 TAT
1 TAT
38412373 CCCTTCTAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.40
Consensus pattern (49 bp):
TATACAATCCTAAACTTAGTCTTCCACAGTCTACACTCTTATCACTATT
Found at i:38412787 original size:30 final size:30
Alignment explanation
Indices: 38412748--38412814 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
38412738 TGACTTGGGT
* *
38412748 CACACGCCCATGTGTGTTGCTCGTATGTGA
1 CACACGCCCATGTGTGTTGCCCATATGTGA
* *
38412778 CACATGCCCATGTGTGTTGCCCATGTGTGA
1 CACACGCCCATGTGTGTTGCCCATATGTGA
38412808 CACACGC
1 CACACGC
38412815 GTGTGTGGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.27
Consensus pattern (30 bp):
CACACGCCCATGTGTGTTGCCCATATGTGA
Found at i:38412800 original size:13 final size:13
Alignment explanation
Indices: 38412782--38412806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38412772 ATGTGACACA
38412782 TGCCCATGTGTGT
1 TGCCCATGTGTGT
38412795 TGCCCATGTGTG
1 TGCCCATGTGTG
38412807 ACACACGCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.24, G:0.32, T:0.36
Consensus pattern (13 bp):
TGCCCATGTGTGT
Found at i:38436623 original size:6 final size:6
Alignment explanation
Indices: 38436609--38436642 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
38436599 AAAATGGATT
* *
38436609 ATTTCC ATTTTC ATTTTC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
38436643 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTCC
Found at i:38436632 original size:18 final size:18
Alignment explanation
Indices: 38436609--38436643 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
38436599 AAAATGGATT
*
38436609 ATTTCCATTTTCATTTTC
1 ATTTCCATTTCCATTTTC
38436627 ATTTCCATTTCCATTTT
1 ATTTCCATTTCCATTTT
38436644 TGGAAACCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTCCATTTCCATTTTC
Found at i:38442104 original size:29 final size:27
Alignment explanation
Indices: 38442086--38442155 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
38442076 ATATTAAGTC
38442086 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
38442113 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
38442141 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
38442156 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:38442149 original size:28 final size:28
Alignment explanation
Indices: 38442086--38442183 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
38442076 ATATTAAGTC
*
38442086 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
38442113 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
38442141 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
38442170 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38442184 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:38443976 original size:24 final size:24
Alignment explanation
Indices: 38443929--38443976 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
38443919 GATGAATTAT
* *
38443929 AATTTAAAGTATATTGGTTGAATA
1 AATTTAAAGTATAATGATTGAATA
38443953 AATTTAAAGTATGAATGATT-AATA
1 AATTTAAAGTAT-AATGATTGAATA
38443977 TACTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (24 bp):
AATTTAAAGTATAATGATTGAATA
Found at i:38463488 original size:39 final size:40
Alignment explanation
Indices: 38463406--38463505 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 40
38463396 GAAATCTTTG
*
38463406 TTATAATTATTGTAATTATAA--TTTAGGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
* *
38463444 TTATAATTATTGTAATTGTAATTTTTTGG-TCAAACATTA
1 TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
*
38463483 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
38463506 ATTATATTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
38 20 0.36
39 30 0.55
40 5 0.09
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (40 bp):
TTATAATTATTGTAATTATAATTTTTAGGATCAAACATTA
Found at i:38477850 original size:50 final size:50
Alignment explanation
Indices: 38477714--38477914 Score: 264
Period size: 50 Copynumber: 4.0 Consensus size: 50
38477704 GCATTAAGAG
* *
38477714 GATGAGA--TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A
*
38477765 GATTATGAGAGGT-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
*
38477817 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
** *
38477867 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC
38477915 TATATAAGAA
Statistics
Matches: 137, Mismatches: 7, Indels: 13
0.87 0.04 0.08
Matches are distributed among these distances:
49 9 0.07
50 83 0.61
51 1 0.01
52 2 0.01
54 6 0.04
55 35 0.26
56 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
Found at i:38477909 original size:105 final size:99
Alignment explanation
Indices: 38477714--38477914 Score: 262
Period size: 105 Copynumber: 2.0 Consensus size: 99
38477704 GCATTAAGAG
*
38477714 GATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCATTGAGATTATGAGAGGTC
1 GATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCA-T-AG--TATGAGAGGTC
*
38477779 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
62 CACGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
* *
38477817 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCA-AG-ATGAGAGGTCCC
1 GATGAGA--TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCATAGTATGAGAGGT-CC
* * *
38477880 CCGTAAGACCATGTCTGGGACATGGCATGGGCACC
63 ACGTAAGACCATGTCTGGGACATGGCGTTGGCACC
38477915 TATATAAGAA
Statistics
Matches: 88, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
99 9 0.10
100 33 0.38
102 2 0.02
103 7 0.08
105 37 0.42
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (99 bp):
GATGAGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCATAGTATGAGAGGTCCACG
TAAGACCATGTCTGGGACATGGCGTTGGCACCAA
Found at i:38478879 original size:29 final size:29
Alignment explanation
Indices: 38478570--38478946 Score: 362
Period size: 29 Copynumber: 13.0 Consensus size: 29
38478560 GACATTCATT
* * * *
38478570 TAACAAAGATAGCCACAAAGGCATCCTCTA
1 TAACAGAGATCGCCACAAAGGCTTTCT-TA
* * * * *
38478600 -GACAGAGATCACCACAAATGCATCCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * * *
38478628 TAATAGAGATCGCCACAAATGCATCCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* *
38478657 TAACAGAGATCGCCACAAATGATTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* *
38478686 TAAAAGAGATTGCCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
38478715 TAACAGGGATCGCCACAAAGGCTTT-TTAA
1 TAACAGAGATCGCCACAAAGGCTTTCTT-A
* * * *
38478744 TAACGGAGATCACCATAAAGGATTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * *
38478773 TAACAGAGATTGTCAAAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
*
38478802 TAACAGAGATTGCCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* *
38478831 TAATAGAGATCGTCACAAAGGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
** * *
38478860 TAACAGAGATCATCAAAAAGGCTTTCTCA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * *
38478889 TAACAAAGATCCCCACAAAGGCTTTTTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
* * * * *
38478918 TGATAGAGTTTGCCACAAAAGCTTTCTTA
1 TAACAGAGATCGCCACAAAGGCTTTCTTA
38478947 CGGAAACTTC
Statistics
Matches: 291, Mismatches: 53, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
28 4 0.01
29 285 0.98
30 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
TAACAGAGATCGCCACAAAGGCTTTCTTA
Found at i:38491895 original size:19 final size:18
Alignment explanation
Indices: 38491854--38491901 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
38491844 AATTTTTGTC
* *
38491854 ATAAAATAATTAATTTTT
1 ATAAAATAATTAAATTAT
38491872 ATAAAATAATTAAATTAT
1 ATAAAATAATTAAATTAT
*
38491890 ATTAAAAAAATT
1 A-TAAAATAATT
38491902 GAACATGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAATAATTAAATTAT
Found at i:38492530 original size:14 final size:14
Alignment explanation
Indices: 38492507--38492536 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
38492497 CATCCCTCAT
*
38492507 TCACATCTCTTCTC
1 TCACAACTCTTCTC
38492521 TCACAACTCTTCTC
1 TCACAACTCTTCTC
38492535 TC
1 TC
38492537 CTCTCTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:38496250 original size:14 final size:14
Alignment explanation
Indices: 38496231--38496257 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38496221 TTGTTTACTT
38496231 ATAAAAGCTTTTCC
1 ATAAAAGCTTTTCC
38496245 ATAAAAGCTTTTC
1 ATAAAAGCTTTTC
38496258 AACCTTTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (14 bp):
ATAAAAGCTTTTCC
Found at i:38499700 original size:20 final size:20
Alignment explanation
Indices: 38499655--38499701 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
38499645 CATCAAAACA
38499655 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
38499675 -CAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
38499694 CCAGAAAA
1 CCAGAAAA
38499702 CATTTTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:38506588 original size:9 final size:9
Alignment explanation
Indices: 38506573--38506615 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
38506563 CTTCAATGAC
38506573 TAAATTGTAA
1 TAAATTG-AA
38506583 -AAATTGGAA
1 TAAATT-GAA
38506592 TAAATTGAA
1 TAAATTGAA
38506601 TAAATTGAA
1 TAAATTGAA
38506610 TAAATT
1 TAAATT
38506616 TCAAAACCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 25 0.81
10 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (9 bp):
TAAATTGAA
Found at i:38506597 original size:19 final size:18
Alignment explanation
Indices: 38506573--38506615 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
38506563 CTTCAATGAC
38506573 TAAATTGTAA-AAATTGGAA
1 TAAATTG-AATAAATT-GAA
38506592 TAAATTGAATAAATTGAA
1 TAAATTGAATAAATTGAA
38506610 TAAATT
1 TAAATT
38506616 TCAAAACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (18 bp):
TAAATTGAATAAATTGAA
Found at i:38509868 original size:27 final size:27
Alignment explanation
Indices: 38509838--38510119 Score: 271
Period size: 27 Copynumber: 10.4 Consensus size: 27
38509828 TGAGTCCGCG
* * *
38509838 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
*
38509865 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
38509892 CACTTAGTGCTACATAATCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
*
38509919 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAATCAAA-TCGCA
** ** *
38509947 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
* * * **
38509974 AACTTAGTGC-ATCGTATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAAATCGCA
* *
38510001 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
** ** *
38510028 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
* * **
38510055 CACTTAGTGC-ATCGTATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAAATCGCA
* *
38510082 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
38510109 CACTTAGTGCT
1 CACTTAGTGCT
38510120 GTACAATTTA
Statistics
Matches: 215, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
27 190 0.88
28 25 0.12
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAAATCGCA
Found at i:38510060 original size:81 final size:81
Alignment explanation
Indices: 38509855--38510118 Score: 386
Period size: 81 Copynumber: 3.2 Consensus size: 81
38509845 TGCTATATAA
* ** * ** * * * **
38509855 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGC-TACATAATCAAATCGCA
1 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCAT-CGTATTCATTTCGCA
*
38509919 CACTTAGTGCTACATAG
65 CACTTAGTGCAACATAG
*
38509936 TCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCAAACTTAGTGCATCGTATTCATTTCGCA
1 TCAAA-TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCA
38510001 CACTTAGTGCAACATAG
65 CACTTAGTGCAACATAG
38510018 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
1 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
38510083 ACTTAGTGCAACATAG
66 ACTTAGTGCAACATAG
38510099 TCAAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
38510119 TGTACAATTT
Statistics
Matches: 167, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 99 0.59
82 67 0.40
83 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
ACTTAGTGCAACATAG
Found at i:38510685 original size:13 final size:13
Alignment explanation
Indices: 38510667--38510691 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38510657 TACTAAATTT
38510667 TCATGGATTCAAG
1 TCATGGATTCAAG
38510680 TCATGGATTCAA
1 TCATGGATTCAA
38510692 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:38517279 original size:27 final size:27
Alignment explanation
Indices: 38517249--38517530 Score: 271
Period size: 27 Copynumber: 10.4 Consensus size: 27
38517239 TGAGTCCGCG
* * *
38517249 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
*
38517276 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
38517303 CACTTAGTGCTACATAATCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
*
38517330 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAATCAAA-TCGCA
** ** *
38517358 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
* * * **
38517385 AACTTAGTGC-ATCGTATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAAATCGCA
* *
38517412 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
** ** *
38517439 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
* * **
38517466 CACTTAGTGC-ATCGTATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAAATCGCA
* *
38517493 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAAATCGCA
38517520 CACTTAGTGCT
1 CACTTAGTGCT
38517531 GTACAATTTA
Statistics
Matches: 215, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
27 190 0.88
28 25 0.12
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAAATCGCA
Found at i:38517471 original size:81 final size:81
Alignment explanation
Indices: 38517266--38517529 Score: 386
Period size: 81 Copynumber: 3.2 Consensus size: 81
38517256 TGCTATATAA
* ** * ** * * * **
38517266 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGC-TACATAATCAAATCGCA
1 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCAT-CGTATTCATTTCGCA
*
38517330 CACTTAGTGCTACATAG
65 CACTTAGTGCAACATAG
*
38517347 TCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCAAACTTAGTGCATCGTATTCATTTCGCA
1 TCAAA-TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCA
38517412 CACTTAGTGCAACATAG
65 CACTTAGTGCAACATAG
38517429 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
1 TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
38517494 ACTTAGTGCAACATAG
66 ACTTAGTGCAACATAG
38517510 TCAAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
38517530 TGTACAATTT
Statistics
Matches: 167, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 99 0.59
82 67 0.40
83 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAAATCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCGTATTCATTTCGCAC
ACTTAGTGCAACATAG
Found at i:38518096 original size:13 final size:13
Alignment explanation
Indices: 38518078--38518102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38518068 TACTAAATTT
38518078 TCATGGATTCAAG
1 TCATGGATTCAAG
38518091 TCATGGATTCAA
1 TCATGGATTCAA
38518103 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:38528333 original size:20 final size:20
Alignment explanation
Indices: 38528282--38528336 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
38528272 CCCATCTTCA
* * * *
38528282 CACTTCGATGTCCTTGTTTG
1 CACTTCGATGCCCATGGTCG
* *
38528302 CACCTCGGTGCCCATGGTCG
1 CACTTCGATGCCCATGGTCG
38528322 CACTTCGATGCCCAT
1 CACTTCGATGCCCAT
38528337 ATTACCATTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.13, C:0.35, G:0.22, T:0.31
Consensus pattern (20 bp):
CACTTCGATGCCCATGGTCG
Found at i:38533931 original size:40 final size:40
Alignment explanation
Indices: 38533886--38534508 Score: 1072
Period size: 40 Copynumber: 15.6 Consensus size: 40
38533876 CAAGCTCAAT
* * * * *
38533886 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38533926 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
38533966 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
38534006 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38534046 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
38534086 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534126 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38534166 TGCCTTCAGGTCTTAGCCC-GATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534205 TGCCTTC-GGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38534244 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534284 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534324 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38534364 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38534404 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534444 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38534484 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
38534509 CATTCAAATG
Statistics
Matches: 557, Mismatches: 22, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
38 11 0.02
39 56 0.10
40 489 0.88
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:38541763 original size:40 final size:40
Alignment explanation
Indices: 38541718--38542302 Score: 1001
Period size: 40 Copynumber: 14.6 Consensus size: 40
38541708 CAAGCTCAAT
* * * * *
38541718 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38541758 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
38541798 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
38541838 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
38541878 TGCCTTTGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
38541918 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38541958 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38541998 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38542038 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38542078 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38542118 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38542158 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
38542198 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38542238 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
38542278 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
38542303 CATTCAAATG
Statistics
Matches: 516, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 513 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Done.