Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 140 of 222
Found at i:45435910 original size:23 final size:23
Alignment explanation
Indices: 45435865--45435916 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
45435855 ATTGACTACA
* *
45435865 TTTTTTTACTTTAATCATTGAAT
1 TTTTTTTACATTAATCATCGAAT
*
45435888 GTTTTTTTACATTAGTC-TCGAAT
1 -TTTTTTTACATTAATCATCGAAT
45435911 TTTTTT
1 TTTTTT
45435917 CAATTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 5 0.20
24 14 0.56
ACGTcount: A:0.21, C:0.10, G:0.08, T:0.62
Consensus pattern (23 bp):
TTTTTTTACATTAATCATCGAAT
Found at i:45436020 original size:11 final size:10
Alignment explanation
Indices: 45435979--45436017 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
45435969 AAAATGTTAT
45435979 AATTTGTTTAA
1 AATTT-TTTAA
45435990 AATTTTTTAA
1 AATTTTTTAA
45436000 AATTTTTTAA
1 AATTTTTTAA
45436010 AATTTTTT
1 AATTTTTT
45436018 TAAGTTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 23 0.82
11 5 0.18
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:45448693 original size:14 final size:16
Alignment explanation
Indices: 45448674--45448706 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45448664 TTTTTATTAA
45448674 TTTATC-CA-TTTATT
1 TTTATCGCATTTTATT
45448688 TTTATCGCATTTTATT
1 TTTATCGCATTTTATT
45448704 TTT
1 TTT
45448707 GTTTTTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 2 0.12
16 9 0.53
ACGTcount: A:0.18, C:0.12, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATCGCATTTTATT
Found at i:45452747 original size:15 final size:15
Alignment explanation
Indices: 45452722--45452763 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
45452712 CCTCTTTGTC
*
45452722 CTTATTTTTTTATTT
1 CTTAATTTTTTATTT
**
45452737 CTTTGTTTTTTA-TT
1 CTTAATTTTTTATTT
45452751 CTTAATTTTTTAT
1 CTTAATTTTTTAT
45452764 CATTTATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (15 bp):
CTTAATTTTTTATTT
Found at i:45461001 original size:2 final size:2
Alignment explanation
Indices: 45460994--45461032 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
45460984 CTTTTTAGCA
* *
45460994 AG AG AG AG AG AG AG AG AG AG AA AG AG AT AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
45461033 ATGAGTACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.54, C:0.00, G:0.44, T:0.03
Consensus pattern (2 bp):
AG
Found at i:45469661 original size:48 final size:48
Alignment explanation
Indices: 45469568--45469663 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
45469558 ATCAGCAATT
* ** *
45469568 ATACATAACATATGACACATACAAAGTCATATTTGCTTCCCCTTTTCA
1 ATACATAACATATAACACATACAAAGTCATATTAACTTACCCTTTTCA
* * ** *
45469616 ATACATAACATATAACATATTCGGAGTCATATTAACTTACTCTTTTCA
1 ATACATAACATATAACACATACAAAGTCATATTAACTTACCCTTTTCA
45469664 TATCCTTCCT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.35
Consensus pattern (48 bp):
ATACATAACATATAACACATACAAAGTCATATTAACTTACCCTTTTCA
Found at i:45469973 original size:49 final size:49
Alignment explanation
Indices: 45469911--45470036 Score: 162
Period size: 49 Copynumber: 2.6 Consensus size: 49
45469901 GGCCCACCAG
* * *
45469911 CCTGGTTAACAACTAACATGTCTTACCAGTGGCCCATCATACACGCCTA
1 CCTGGTTAGCAACTAACATGCCTTACCAGTGGCCCATCATACACGCCCA
* * * * * *
45469960 TCTGGTTAGCAACTAATATGCCCTACCAGTGGCCTATCATATACTCCCA
1 CCTGGTTAGCAACTAACATGCCTTACCAGTGGCCCATCATACACGCCCA
*
45470009 CCTGGTTAGCAACTAGCATGCCTTACCA
1 CCTGGTTAGCAACTAACATGCCTTACCA
45470037 ATGGTCAAGC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (49 bp):
CCTGGTTAGCAACTAACATGCCTTACCAGTGGCCCATCATACACGCCCA
Found at i:45476874 original size:51 final size:50
Alignment explanation
Indices: 45476819--45476943 Score: 135
Period size: 51 Copynumber: 2.5 Consensus size: 50
45476809 TCACTTGTGT
* *
45476819 AGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT-TCGATCACGTGTAC
1 AGTACTATGTGCAGGCTACTATGCGTACCAGATAG-TAT-GATCACATGTAC
* * * * * **
45476870 AGTACTATATGCAGGCTACTAAGTGTATCAGATAGTGATGGTCACATGTGT
1 AGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-ATGATCACATGTAC
45476921 AGTACTATGTGCAGGCTACTATG
1 AGTACTATGTGCAGGCTACTATG
45476944 TGAACCAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
50 1 0.02
51 59 0.97
52 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGTACTATGTGCAGGCTACTATGCGTACCAGATAGTATGATCACATGTAC
Found at i:45477777 original size:37 final size:37
Alignment explanation
Indices: 45477727--45477805 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
45477717 TTATTACGAA
* * *
45477727 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
45477764 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
45477801 GTCTT
1 GTCTT
45477806 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:45478002 original size:47 final size:47
Alignment explanation
Indices: 45477924--45478528 Score: 1048
Period size: 47 Copynumber: 12.7 Consensus size: 47
45477914 CCCTTCGGGA
* * * * * *
45477924 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45477971 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45478065 CTTATCACATATATATACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478112 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478159 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45478208 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478255 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478302 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45478351 CTTATCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478445 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45478494 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
45478529 AGAATCCTAA
Statistics
Matches: 534, Mismatches: 18, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
47 393 0.74
49 141 0.26
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45478202 original size:96 final size:94
Alignment explanation
Indices: 45477924--45478528 Score: 1048
Period size: 96 Copynumber: 6.4 Consensus size: 94
45477914 CCCTTCGGGA
* * * * * * * *
45477924 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45477989 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
45478018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
45478083 TTTCATATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
45478112 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
45478177 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
45478208 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45478273 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
45478302 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
45478367 ACTTTCAGATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
45478398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
45478463 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
45478494 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
45478529 AGAATCCTAA
Statistics
Matches: 489, Mismatches: 16, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 233 0.48
96 256 0.52
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:45478218 original size:143 final size:143
Alignment explanation
Indices: 45477924--45478528 Score: 1088
Period size: 143 Copynumber: 4.2 Consensus size: 143
45477914 CCCTTCGGGA
* * * * * * * *
45477924 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45477989 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45478052 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
45478065 CTTATCACATATATATACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45478130 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45478195 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
45478208 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45478273 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45478338 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
45478351 CTTATCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45478416 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45478481 TCGGCCATTAGGC
131 TCGGCCATTAGGC
45478494 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
45478529 AGAATCCTAA
Statistics
Matches: 449, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
141 92 0.20
143 357 0.80
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:45480284 original size:13 final size:13
Alignment explanation
Indices: 45480266--45480290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45480256 TACTAAATTT
45480266 TCATGGATTCAAA
1 TCATGGATTCAAA
45480279 TCATGGATTCAA
1 TCATGGATTCAA
45480291 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:45481219 original size:16 final size:16
Alignment explanation
Indices: 45481198--45481229 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45481188 TGATTGAAAG
*
45481198 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
45481214 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
45481230 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:45484554 original size:23 final size:23
Alignment explanation
Indices: 45484528--45484593 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
45484518 AAATTTTTAT
*
45484528 AGAATACACCATACAGGCTTGAA
1 AGAATACACCACACAGGCTTGAA
* * * *
45484551 AGAATATACCACACAGGTTTTAC
1 AGAATACACCACACAGGCTTGAA
45484574 AGAATATC-CCACACAGGCTT
1 AGAATA-CACCACACAGGCTT
45484594 CTCCCGTAGA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.21
Consensus pattern (23 bp):
AGAATACACCACACAGGCTTGAA
Found at i:45492784 original size:36 final size:36
Alignment explanation
Indices: 45492737--45492811 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
45492727 CATAATGCTA
45492737 AATTATGCATAAAAA-AGCTTATTTTGCTAATTATTG
1 AATTATGCATAAAAATA-CTTATTTTGCTAATTATTG
45492773 AATTATGCATAAAAATACTTATTTTGCTAATTATTG
1 AATTATGCATAAAAATACTTATTTTGCTAATTATTG
45492809 AAT
1 AAT
45492812 CTAAATTACT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 37 0.97
37 1 0.03
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (36 bp):
AATTATGCATAAAAATACTTATTTTGCTAATTATTG
Found at i:45497226 original size:11 final size:11
Alignment explanation
Indices: 45497202--45497253 Score: 70
Period size: 11 Copynumber: 4.6 Consensus size: 11
45497192 TAAATGACAC
45497202 TAACA-AAATAT
1 TAACATAAAT-T
*
45497213 TAACAGAAATT
1 TAACATAAATT
45497224 TAACATAAATT
1 TAACATAAATT
45497235 TAACATAAATT
1 TAACATAAATT
45497246 TAAACATA
1 T-AACATA
45497254 TAATAGTTGC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
11 28 0.74
12 10 0.26
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (11 bp):
TAACATAAATT
Found at i:45506320 original size:29 final size:30
Alignment explanation
Indices: 45506263--45506337 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 30
45506253 TCCTTACAAA
*
45506263 TAGATAGCCACAAAGGCAGCCACATAACAT
1 TAGATAGCCACAAAGGCAGCCACACAACAT
*
45506293 TAGATAGCCAC-AAGGC-TCTCACACAACAT
1 TAGATAGCCACAAAGGCAGC-CACACAACAT
* *
45506322 TAGATATCCATAAAGG
1 TAGATAGCCACAAAGG
45506338 TGCCTACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 23 0.59
30 15 0.38
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.17
Consensus pattern (30 bp):
TAGATAGCCACAAAGGCAGCCACACAACAT
Found at i:45507685 original size:24 final size:23
Alignment explanation
Indices: 45507641--45507686 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
45507631 AAAGCTGCAT
*
45507641 TAATGCTCTCGAATCGATCAAAG
1 TAATGCTCTCGAAACGATCAAAG
*
45507664 TAATGCTACTCGAAACGGTCAAA
1 TAATGCT-CTCGAAACGATCAAA
45507687 CTACGCTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (23 bp):
TAATGCTCTCGAAACGATCAAAG
Found at i:45507713 original size:324 final size:324
Alignment explanation
Indices: 45507109--45508080 Score: 1615
Period size: 324 Copynumber: 3.0 Consensus size: 324
45507099 CTTAACTCAT
45507109 TTCTTTTTAACTTTGAACATCATAATCACATAGCAGAACCTTGTCATAATTGCTTCAATAAGCTC
1 TTCTTTTTAACTTTGAACATCATAATCACATAGCAGAACCTTGTCATAATTGCTTCAATAAGCTC
45507174 AACGTAA-TTGCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTT
66 AACGTAACTT-CTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTT
* *
45507238 CAAAGTTGA-CCTCTCATTCCCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCT
130 CAAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCT
45507302 GATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGCAGCGCTGCTCGAAACGGTCAAACTGT
195 GATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGCAGCGCTGCTCGAAACGGTCAAACTGT
*
45507367 GCTGTAAGGTTCTCGAGTGTAATAGTAGGAGCAGCGGTAAGGTAACTCGGTAGTGGAAAATGAGG
260 GCTGTAAGGTTCTCGAGTGTAATAGTAGGAGCAGCGGTAAGGTGACTCGGTAGTGGAAAATGAGG
* *
45507432 TTCTTTTTAACTTTGAGCATCATAATCACATAGCAGAACGTTGTCATAATTGCTTCAATAAGCTC
1 TTCTTTTTAACTTTGAACATCATAATCACATAGCAGAACCTTGTCATAATTGCTTCAATAAGCTC
*
45507497 AACGTAACTTCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTATCTTTCCAAGGGTATTTC
66 AACGTAACTTCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTTC
* * *
45507562 AAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGAAGAGATACGGAGATGCTGATGAATCTA
131 AAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCTG
* * * ** * **
45507627 ATGCAAAGCTGCATTAATGCTCTCGAATCGATCAAAGTAATGCTACTCGAAACGGTCAAACTACG
196 ATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGCAGCGCTGCTCGAAACGGTCAAACTGTG
* *
45507692 CTGTAAGGTTCTCGAGTGTAATAGTAGGAGTAGCGGTAAGATGACTCGGTAGTGGAAAATGAGG
261 CTGTAAGGTTCTCGAGTGTAATAGTAGGAGCAGCGGTAAGGTGACTCGGTAGTGGAAAATGAGG
* * *
45507756 TTCTTTTTAACTTTGAACATCATAATCATATAGCAAAACCTTGTCATAATTTCTTCAATAAGCTC
1 TTCTTTTTAACTTTGAACATCATAATCACATAGCAGAACCTTGTCATAATTGCTTCAATAAGCTC
*
45507821 AACGTAACTGCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTTC
66 AACGTAACTTCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTTC
45507886 AAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCTG
131 AAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCTG
* * * *
45507951 ATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGGAGCGTTGCTCGAAATGATCAAACTGTG
196 ATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGCAGCGCTGCTCGAAACGGTCAAACTGTG
* * * * * * *
45508016 TTGTAAAGTTCTCGAGTGTAATAGTATGAACAGCGATAAGGTGACTCGATAGTGAAAAATGAGG
261 CTGTAAGGTTCTCGAGTGTAATAGTAGGAGCAGCGGTAAGGTGACTCGGTAGTGGAAAATGAGG
45508080 T
1 T
45508081 GGGTTTGCAT
Statistics
Matches: 598, Mismatches: 49, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
323 131 0.22
324 467 0.78
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (324 bp):
TTCTTTTTAACTTTGAACATCATAATCACATAGCAGAACCTTGTCATAATTGCTTCAATAAGCTC
AACGTAACTTCTCTTAGGCAGCATCTCATGCAAGGCTACAAATCTTACCTTTCCAAGGGTATTTC
AAATTTGATCCTCTCATTCTCGGCTCATAATCGGGTGGAGAGATATGGAGATGCTGATGAATCTG
ATGCAAAGCTGCGTTAATGCTATCGAATCGATCAAAGCAGCGCTGCTCGAAACGGTCAAACTGTG
CTGTAAGGTTCTCGAGTGTAATAGTAGGAGCAGCGGTAAGGTGACTCGGTAGTGGAAAATGAGG
Found at i:45509002 original size:18 final size:18
Alignment explanation
Indices: 45508979--45509016 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45508969 GTCTAGCAAT
45508979 TGAGGTGGGGACTGAAGA
1 TGAGGTGGGGACTGAAGA
* *
45508997 TGAGGTTGTGACTGAAGA
1 TGAGGTGGGGACTGAAGA
45509015 TG
1 TG
45509017 CGGTTGCGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.45, T:0.24
Consensus pattern (18 bp):
TGAGGTGGGGACTGAAGA
Found at i:45509021 original size:18 final size:18
Alignment explanation
Indices: 45508988--45509022 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45508978 TTGAGGTGGG
45508988 GACTGAAGATGAGGTTGT
1 GACTGAAGATGAGGTTGT
*
45509006 GACTGAAGATGCGGTTG
1 GACTGAAGATGAGGTTG
45509023 CGCCCGGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.40, T:0.26
Consensus pattern (18 bp):
GACTGAAGATGAGGTTGT
Found at i:45509438 original size:5 final size:5
Alignment explanation
Indices: 45509414--45509512 Score: 53
Period size: 5 Copynumber: 18.6 Consensus size: 5
45509404 ATAGTAATAA
*
45509414 AAAAT AAATAT AAAAT -AAAT AAAAT AAAAT AAAA- AGAGCAAT AAGA-
1 AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT A-A--AAT AAAAT
* *
45509460 ACAAT ATAAAT -AAAT AAAAGG AAAAT AATAAAT AAAAATT AAAAT AAAAT
1 AAAAT A-AAAT AAAAT AAAA-T AAAAT -A-AAAT -AAAA-T AAAAT AAAAT
45509510 AAA
1 AAA
45509513 TGATAAACAA
Statistics
Matches: 75, Mismatches: 6, Indels: 26
0.70 0.06 0.24
Matches are distributed among these distances:
4 11 0.15
5 33 0.44
6 20 0.27
7 10 0.13
8 1 0.01
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:45522422 original size:23 final size:23
Alignment explanation
Indices: 45522395--45522441 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
45522385 TTATTATATC
45522395 TCATAACTTACAATTTCATTGCT
1 TCATAACTTACAATTTCATTGCT
45522418 TCATAACTTACAATTTCATTGCT
1 TCATAACTTACAATTTCATTGCT
45522441 T
1 T
45522442 ACACTGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (23 bp):
TCATAACTTACAATTTCATTGCT
Found at i:45522704 original size:41 final size:41
Alignment explanation
Indices: 45522647--45522731 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
45522637 AACAAAAAGA
45522647 TAACCAAATTATTTTCTGATAACCTCTCCCCCATTATCTCC
1 TAACCAAATTATTTTCTGATAACCTCTCCCCCATTATCTCC
45522688 TAACCAAATTATTTTCTGATAACCTCTCCCCCATTATCTCC
1 TAACCAAATTATTTTCTGATAACCTCTCCCCCATTATCTCC
45522729 TAA
1 TAA
45522732 AATCACTCCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.28, C:0.33, G:0.02, T:0.36
Consensus pattern (41 bp):
TAACCAAATTATTTTCTGATAACCTCTCCCCCATTATCTCC
Found at i:45529266 original size:39 final size:39
Alignment explanation
Indices: 45529208--45529321 Score: 115
Period size: 39 Copynumber: 2.9 Consensus size: 39
45529198 AGAAAATCTT
*
45529208 ATTCACTATAATCAATGGATAATGCTTGTTTGAGCAAGC
1 ATTCACTATAATCAATGGATAATGCTCGTTTGAGCAAGC
* * * *
45529247 ATTCAGTATAATTAGTGGATATTGCTCGTTTGAGCAA-C
1 ATTCACTATAATCAATGGATAATGCTCGTTTGAGCAAGC
* * * *
45529285 TATTCGA-TAGAATCAGTAGATATTGCTCGTTTGAGCA
1 -ATTC-ACTATAATCAATGGATAATGCTCGTTTGAGCA
45529322 CTTTAGTAGA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
38 1 0.02
39 63 0.97
40 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (39 bp):
ATTCACTATAATCAATGGATAATGCTCGTTTGAGCAAGC
Found at i:45529346 original size:36 final size:36
Alignment explanation
Indices: 45529264--45529667 Score: 481
Period size: 36 Copynumber: 11.0 Consensus size: 36
45529254 ATAATTAGTG
*
45529264 GATATTGCTCGTTTGAGCAACTATTCGATAGAATCAGTA
1 GATATTGCTCGTTTGAGC-ACT-TTAG-TAGAATCAGTA
*
45529303 GATATTGCTCGTTTGAGCACTTTAGTAGAATCAATA
1 GATATTGCTCGTTTGAGCACTTTAGTAGAATCAGTA
* * * * *
45529339 GACATTGCTCGTTTTAGAAAATTTAGTAGGATCAGTA
1 GATATTGCTCGTTTGAG-CACTTTAGTAGAATCAGTA
* * *
45529376 GATATTGCTTG-TTGAGCACGTTCAGTAGAATCATTA
1 GATATTGCTCGTTTGAGCAC-TTTAGTAGAATCAGTA
*
45529412 GATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTA
1 GATATTGCTCGTTTGAGCACTTTAGTAGAATCAGTA
* * * *
45529448 AACATTGCTCGTTTGAGCACATTTAGTAGGATTAGTA
1 GATATTGCTCGTTTGAGCAC-TTTAGTAGAATCAGTA
*
45529485 GATAATGCTCG-TTGAGCACTTTTAGTAGAATCAGTA
1 GATATTGCTCGTTTGAGCAC-TTTAGTAGAATCAGTA
* *
45529521 GATATTTCTCGTTTGAGCACTTTCATTAGAATCAGTA
1 GATATTGCTCGTTTGAGCACTTT-AGTAGAATCAGTA
* * * *
45529558 GACATTGCTC-ATTGAGCACTTTTAGTAGTATCAATA
1 GATATTGCTCGTTTGAGCAC-TTTAGTAGAATCAGTA
*
45529594 GATATTGCTCGTTTGAGCACTTTCAGTAGAATAAGTA
1 GATATTGCTCGTTTGAGCACTTT-AGTAGAATCAGTA
45529631 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTA
1 GATATTGCTCGTTTGAGCAC-TTTAGTAGAATCAGTA
45529668 TTCCATTTTT
Statistics
Matches: 311, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
35 1 0.00
36 149 0.48
37 137 0.44
38 6 0.02
39 18 0.06
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (36 bp):
GATATTGCTCGTTTGAGCACTTTAGTAGAATCAGTA
Found at i:45529379 original size:73 final size:73
Alignment explanation
Indices: 45529264--45529667 Score: 485
Period size: 73 Copynumber: 5.5 Consensus size: 73
45529254 ATAATTAGTG
* *
45529264 GATATTGCTCGTTTGAGCAACTATTCGATAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAGT
1 GATATTGCTCGTTTGAGC-ACTTTTAG-TAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAGT
45529329 AGAATCAATA
64 AGAATCAATA
* * * ** * * *
45529339 GACATTGCTCGTTTTAGAAAATTTAGTAGGATCAGTAGATATTGCTTG-TTGAGCACGTTCAGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTA
*
45529403 GAATCATTA
65 GAATCAATA
* * *
45529412 GATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAAACATTGCTCGTTTGAGCACATTTAGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTA
* * *
45529476 GGATTAGTA
65 GAATCAATA
* * *
45529485 GATAATGCTCG-TTGAGCACTTTTAGTAGAATCAGTAGATATTTCTCGTTTGAGCACTTTCATTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-AGTA
*
45529549 GAATCAGTA
65 GAATCAATA
* * * *
45529558 GACATTGCTC-ATTGAGCACTTTTAGTAGTATCAATAGATATTGCTCGTTTGAGCACTTTCAGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-AGTA
45529622 GAAT-AAGTA
65 GAATCAA-TA
45529631 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTA
45529668 TTCCATTTTT
Statistics
Matches: 278, Mismatches: 44, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
72 42 0.15
73 194 0.70
74 27 0.10
75 15 0.05
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (73 bp):
GATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAGTAG
AATCAATA
Found at i:45529421 original size:109 final size:109
Alignment explanation
Indices: 45529264--45529667 Score: 560
Period size: 109 Copynumber: 3.7 Consensus size: 109
45529254 ATAATTAGTG
45529264 GATATTGCTCGTTTGAGCAACTATTC-GATAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAG
1 GATATTGCTCG-TTGAGC-ACT-TTCAG-TAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAG
* * * *
45529328 TAGAATCAATAGACATTGCTCGTTTTAGAAAATTTAGTAGGATCAGTA
62 TAGAATCAGTAGACATTGCTCGTTTGAGCACATTTAGTAGGATCAGTA
* * * *
45529376 GATATTGCTTGTTGAGCACGTTCAGTAGAATCATTAGATATTGCTCGTTTGAGCACTTCAGTAGA
1 GATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAGTAGA
* *
45529441 ATCAGTAAACATTGCTCGTTTGAGCACATTTAGTAGGATTAGTA
66 ATCAGTAGACATTGCTCGTTTGAGCACATTTAGTAGGATCAGTA
* * * *
45529485 GATAATGCTCGTTGAGCACTTTTAGTAGAATCAGTAGATATTTCTCGTTTGAGCACTTTCATTAG
1 GATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-AGTAG
* * * *
45529550 AATCAGTAGACATTGCTC-ATTGAGCACTTTTAGTAGTATCAATA
65 AATCAGTAGACATTGCTCGTTTGAGCACATTTAGTAGGATCAGTA
*
45529594 GATATTGCTCGTTTGAGCACTTTCAGTAGAATAAGTAGATATTGCTCGTTTGAGCACTTTTAGTA
1 GATATTGCTCG-TTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTA
45529659 GAATCAGTA
64 GAATCAGTA
45529668 TTCCATTTTT
Statistics
Matches: 259, Mismatches: 29, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
109 162 0.63
110 78 0.30
111 9 0.03
112 10 0.04
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (109 bp):
GATATTGCTCGTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTAGTAGA
ATCAGTAGACATTGCTCGTTTGAGCACATTTAGTAGGATCAGTA
Found at i:45538141 original size:25 final size:23
Alignment explanation
Indices: 45538107--45538153 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
45538097 GTTAGGTAAA
45538107 TTTAAATTGTTGTGAAATTGTTATG
1 TTTAAATTGTT-TG-AATTGTTATG
*
45538132 TTTAATTTGTTTGAATTGTTAT
1 TTTAAATTGTTTGAATTGTTAT
45538154 TTAACTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.43
24 2 0.10
25 10 0.48
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (23 bp):
TTTAAATTGTTTGAATTGTTATG
Found at i:45538336 original size:17 final size:17
Alignment explanation
Indices: 45538305--45538338 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45538295 GGAAAATGTT
* *
45538305 AAATTTGAGTTTTCTAC
1 AAATTTGAATATTCTAC
45538322 AAATTTGAATATTCTAC
1 AAATTTGAATATTCTAC
45538339 TAATAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (17 bp):
AAATTTGAATATTCTAC
Found at i:45538725 original size:15 final size:15
Alignment explanation
Indices: 45538691--45538727 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
45538681 TTTTAAACAA
*
45538691 ATTTTATATGTTTTT
1 ATTTTATATGTTTGT
45538706 A-TTTATATGTTTGT
1 ATTTTATATGTTTGT
45538720 ATTTTATA
1 ATTTTATA
45538728 ATTCTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (15 bp):
ATTTTATATGTTTGT
Found at i:45549462 original size:43 final size:43
Alignment explanation
Indices: 45549284--45549480 Score: 184
Period size: 43 Copynumber: 4.6 Consensus size: 43
45549274 ACGTTTGCGG
* * * * *
45549284 CGCTTCTTC-CACAAACACCGTTATAGATCAGGACCTTTAGCGG
1 CGCTT-TTCTCACAAACGCCGCTAAAGATCAAGACCTTTAGCGA
* * * *
45549327 TGCTTTTTTTACAAACGCCGCTATAAG-TCAAGACCTTTAGCGG
1 CGCTTTTCTCACAAACGCCGCTA-AAGATCAAGACCTTTAGCGA
* * *
45549370 CGCTTTTTTCGCAAACGCCACTAAAGATCAAGACCTTTAGC-A
1 CGCTTTTCTCACAAACGCCGCTAAAGATCAAGACCTTTAGCGA
* * *
45549412 GCTCTTTTCCCACAAACGCTGCTAAAGATCAAGACCTTTAGCGA
1 -CGCTTTTCTCACAAACGCCGCTAAAGATCAAGACCTTTAGCGA
* * *
45549456 CGCTTTTCACAAAAACGCCACTAAA
1 CGCTTTTCTCACAAACGCCGCTAAA
45549481 AACAAAACAT
Statistics
Matches: 126, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
42 5 0.04
43 118 0.94
44 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
CGCTTTTCTCACAAACGCCGCTAAAGATCAAGACCTTTAGCGA
Found at i:45549913 original size:43 final size:43
Alignment explanation
Indices: 45549841--45549931 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
45549831 CACATTGCAA
* * * *
45549841 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
* *
45549884 GGTAATAAAAGATATAATACATCTACTTAATCAAGGAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
45549927 -GTAAT
1 GGTAAT
45549932 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
Found at i:45554546 original size:21 final size:21
Alignment explanation
Indices: 45554521--45554573 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
45554511 ACCATAAATT
45554521 ATAAAACATAACCCCTAAACA
1 ATAAAACATAACCCCTAAACA
* * ** *
45554542 TTAAATCCCAACCCTTAAACA
1 ATAAAACATAACCCCTAAACA
*
45554563 ATAAACCATAA
1 ATAAAACATAA
45554574 ACCGTAATCC
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (21 bp):
ATAAAACATAACCCCTAAACA
Found at i:45554573 original size:7 final size:7
Alignment explanation
Indices: 45554557--45554666 Score: 53
Period size: 7 Copynumber: 15.4 Consensus size: 7
45554547 TCCCAACCCT
*
45554557 TAAACAA
1 TAAACCA
45554564 TAAACCA
1 TAAACCA
*
45554571 TAAACCG
1 TAAACCA
* *
45554578 TAATCCC
1 TAAACCA
45554585 TAAACCCA
1 TAAA-CCA
*
45554593 TAATCCA
1 TAAACCA
*
45554600 TAAACCT
1 TAAACCA
45554607 TAAA--A
1 TAAACCA
*
45554612 TAGTAACTCT
1 TA--AAC-CA
*
45554622 TAAACCT
1 TAAACCA
*
45554629 TAAACCC
1 TAAACCA
**
45554636 TACCCCA
1 TAAACCA
*
45554643 TATACCA
1 TAAACCA
45554650 TAAACCA
1 TAAACCA
*
45554657 TAAACTA
1 TAAACCA
45554664 TAA
1 TAA
45554667 TCATAATTAA
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
5 2 0.03
7 66 0.85
8 8 0.10
10 2 0.03
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:45555186 original size:22 final size:22
Alignment explanation
Indices: 45555159--45555203 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45555149 CTGACCCTTG
45555159 AATCCCTAAATCATAAACCCTA
1 AATCCCTAAATCATAAACCCTA
* * *
45555181 AATCCCTAACTCTTAACCCCTA
1 AATCCCTAAATCATAAACCCTA
45555203 A
1 A
45555204 CCCCTAACCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.24
Consensus pattern (22 bp):
AATCCCTAAATCATAAACCCTA
Found at i:45555201 original size:14 final size:14
Alignment explanation
Indices: 45555184--45555231 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
45555174 AACCCTAAAT
*
45555184 CCCTAACTCTTAAC
1 CCCTAACTCCTAAC
*
45555198 CCCTAACCCCTAAC
1 CCCTAACTCCTAAC
45555212 CCCTAACTCCTAAC
1 CCCTAACTCCTAAC
45555226 CCCTAA
1 CCCTAA
45555232 ACCTTAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.29, C:0.50, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTAACTCCTAAC
Found at i:45555208 original size:21 final size:21
Alignment explanation
Indices: 45555184--45555231 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
45555174 AACCCTAAAT
* *
45555184 CCCTAACTCTTAACCCCTAAC
1 CCCTAACCCCTAACCCCTAAC
*
45555205 CCCTAACCCCTAACTCCTAAC
1 CCCTAACCCCTAACCCCTAAC
45555226 CCCTAA
1 CCCTAA
45555232 ACCTTAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.50, G:0.00, T:0.21
Consensus pattern (21 bp):
CCCTAACCCCTAACCCCTAAC
Found at i:45555531 original size:7 final size:7
Alignment explanation
Indices: 45555519--45555696 Score: 56
Period size: 7 Copynumber: 24.9 Consensus size: 7
45555509 ACTAGTTAAT
45555519 CTAAACC
1 CTAAACC
45555526 CTAAACC
1 CTAAACC
*
45555533 ATAAACC
1 CTAAACC
45555540 CTAAAACC
1 CT-AAACC
*
45555548 ATAAACC
1 CTAAACC
* *
45555555 CTTAACA
1 CTAAACC
45555562 C-ATAACC
1 CTA-AACC
45555569 TCTAAACC
1 -CTAAACC
*
45555577 TTAAACC
1 CTAAACC
* *
45555584 C-CAGCC
1 CTAAACC
*
45555590 TTTAAACC
1 -CTAAACC
*
45555598 ATAAACC
1 CTAAACC
* *
45555605 ATAACCC
1 CTAAACC
45555612 CTAAACC
1 CTAAACC
*
45555619 CATAATCC
1 C-TAAACC
*
45555627 ATAAACC
1 CTAAACC
* **
45555634 TTAAAATG
1 CT-AAACC
*
45555642 GT-AACAC
1 CTAAAC-C
*
45555649 CTAAACT
1 CTAAACC
* *
45555656 TTAAACT
1 CTAAACC
45555663 CTAAACC
1 CTAAACC
* *
45555670 ATATACC
1 CTAAACC
45555677 CTAAACC
1 CTAAACC
**
45555684 AAAAACC
1 CTAAACC
45555691 CTAAAC
1 CTAAAC
45555697 TATAGTGATA
Statistics
Matches: 120, Mismatches: 41, Indels: 20
0.66 0.23 0.11
Matches are distributed among these distances:
6 5 0.04
7 88 0.73
8 26 0.22
9 1 0.01
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:45555548 original size:15 final size:14
Alignment explanation
Indices: 45555520--45555696 Score: 90
Period size: 14 Copynumber: 11.9 Consensus size: 14
45555510 CTAGTTAATC
45555520 TAAACCCTAAACCA
1 TAAACCCTAAACCA
45555534 TAAACCCTAAAACCA
1 TAAACCCT-AAACCA
*
45555549 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
*
45555564 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
45555578 TAAACCCCAGCCTTTAAACCA
1 TAAA---C--CC--TAAACCA
* * *
45555599 TAAACCATAACCCC
1 TAAACCCTAAACCA
*
45555613 TAAACCCATAATCCA
1 TAAACCC-TAAACCA
*
45555628 TAAACCTTAAA--A
1 TAAACCCTAAACCA
* **
45555640 TGGTAACACCTAAACTT
1 T--AAAC-CCTAAACCA
*
45555657 TAAACTCTAAACCA
1 TAAACCCTAAACCA
*
45555671 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
45555685 AAAACCCTAAAC
1 TAAACCCTAAAC
45555697 TATAGTGATA
Statistics
Matches: 123, Mismatches: 23, Indels: 34
0.68 0.13 0.19
Matches are distributed among these distances:
12 2 0.02
14 62 0.50
15 43 0.35
16 1 0.01
17 1 0.01
18 2 0.02
19 1 0.01
20 1 0.01
21 10 0.08
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:45555568 original size:29 final size:29
Alignment explanation
Indices: 45555520--45555696 Score: 82
Period size: 29 Copynumber: 5.9 Consensus size: 29
45555510 CTAGTTAATC
45555520 TAAACCCTAAACCATAAACC-CTAAAACCA
1 TAAACCCTAAACCATAAACCTCT-AAACCA
* *
45555549 TAAACCCTTAACACAT-AACCTCTAAACCT
1 TAAACCCTAAAC-CATAAACCTCTAAACCA
* * *
45555578 TAAACCCCAGCCTTTAAACCATAAACC-ATAACCCC
1 TAAA---C--CC--TAAACCATAAACCTCTAAACCA
*
45555613 TAAACCCATAATCCATAAACCT-TAAA--A
1 TAAACCC-TAAACCATAAACCTCTAAACCA
* **
45555640 TGGTAACACCTAAACTTTAAA-CTCTAAACCA
1 T--AAAC-CCTAAACCATAAACCTCTAAACCA
* *
45555671 TATACCCTAAACCAAAAACC-CTAAAC
1 TAAACCCTAAACCATAAACCTCTAAAC
45555697 TATAGTGATA
Statistics
Matches: 111, Mismatches: 19, Indels: 37
0.66 0.11 0.22
Matches are distributed among these distances:
27 1 0.01
28 18 0.16
29 57 0.51
30 9 0.08
31 2 0.02
32 2 0.02
34 2 0.02
35 12 0.11
36 8 0.07
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.20
Consensus pattern (29 bp):
TAAACCCTAAACCATAAACCTCTAAACCA
Found at i:45555638 original size:22 final size:21
Alignment explanation
Indices: 45555591--45555696 Score: 63
Period size: 21 Copynumber: 5.0 Consensus size: 21
45555581 ACCCCAGCCT
*
45555591 TTAAACCATAAACCATAACCC
1 TTAAACCATAAACCATAAACC
* *
45555612 CTAAACCCATAATCCATAAACC
1 TTAAA-CCATAAACCATAAACC
*** *
45555634 TTAAAATGGTAACACC-TAAACT
1 TT-AAACCATAA-ACCATAAACC
*
45555656 TTAAACTC-TAAACCATATACC
1 TTAAAC-CATAAACCATAAACC
* * *
45555677 CTAAACCAAAAACCCTAAAC
1 TTAAACCATAAACCATAAAC
45555697 TATAGTGATA
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
20 4 0.06
21 28 0.45
22 25 0.40
23 5 0.08
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (21 bp):
TTAAACCATAAACCATAAACC
Found at i:45555988 original size:41 final size:41
Alignment explanation
Indices: 45555928--45556075 Score: 219
Period size: 41 Copynumber: 3.6 Consensus size: 41
45555918 TAGAGAATTC
* *
45555928 GCGGCGCTTT-CTCAAAAACGCCACTAAAGCCCTAAGCATTA
1 GCGGCGCTTTCCT-AAAAACGCCGCTAAAGCCCTGAGCATTA
**
45555969 GCGGTACTTTCCTAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCTAAAAACGCCGCTAAAGCCCTGAGCATTA
*
45556010 GCGGCGCTTTCCTAAAAATGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTCCTAAAAACGCCGCTAAAGCCCTGAGCATTA
*
45556051 GCGGCGCTTTCC-CAAAACGCCGCTA
1 GCGGCGCTTTCCTAAAAACGCCGCTA
45556076 CAGCTGCGCT
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
40 11 0.11
41 84 0.87
42 2 0.02
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (41 bp):
GCGGCGCTTTCCTAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:45556122 original size:68 final size:69
Alignment explanation
Indices: 45556013--45556144 Score: 221
Period size: 68 Copynumber: 1.9 Consensus size: 69
45556003 AGCATTAGCG
* *
45556013 GCGCTTTCCTAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCCA-AAACGCCGCTAC
1 GCGCTTTCCTAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCCCAGAAACGCCGCTAC
45556077 AGCT
66 AGCT
* *
45556081 GCGCTTTCTTAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCTCAGAAACGCCGCTA
1 GCGCTTTCCTAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCCCAGAAACGCCGCTA
45556145 AAGCCCACGA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
68 48 0.81
69 11 0.19
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (69 bp):
GCGCTTTCCTAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCCCAGAAACGCCGCTAC
AGCT
Found at i:45566910 original size:116 final size:114
Alignment explanation
Indices: 45566666--45566931 Score: 367
Period size: 116 Copynumber: 2.3 Consensus size: 114
45566656 AAAAGAAAAA
* **
45566666 TTTCGTGTCAGAGTCAGATAT-AAAA-ATACGAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
* *
45566729 TGTCAATGGCCGGCACCGAGTGAATAGTAAAAAAACAATTTTTTTCTTTT
66 TGTCAATGGCCGGCACCCAGTGAACAGT-AAAAAACAATTTTTTTCTTTT
*
45566779 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTTTAAAAATTTTTTTGGGGTGCTGG
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAA-TTAAAAAATTTTTTT-GGGTGCTGG
****
45566844 CCTGTCAATGGCCGGCACCCAGTGAACAGT-AAAATTTTTTTTTTTCATTTT
64 CCTGTCAATGGCCGGCACCCAGTGAACAGTAAAAAACAATTTTTTTC-TTTT
**
45566895 TTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAA
1 TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAA
45566932 TAAAAATTTT
Statistics
Matches: 136, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
113 20 0.15
114 4 0.03
115 22 0.16
116 53 0.39
117 37 0.27
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (114 bp):
TTTCGTGTCAGAATCAGATATAAAAATATAAAAAAAAAATTAAAAAATTTTTTTGGGTGCTGGCC
TGTCAATGGCCGGCACCCAGTGAACAGTAAAAAACAATTTTTTTCTTTT
Found at i:45567346 original size:108 final size:111
Alignment explanation
Indices: 45567213--45567419 Score: 339
Period size: 108 Copynumber: 1.9 Consensus size: 111
45567203 AAAATTTTTT
*
45567213 TTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAATTTTTTTTT-A-TTTTTT
1 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTTTTTT
*
45567275 TCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAAA
66 TCGTATTTTTATATCTGACTCTGACACGAAAAAAAAAGAAAAAAAA
45567321 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTTAAATTTT
1 TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCC--AAAATTTTTTTTT-AATTTT
*
45567386 TTTTTGTATTTTTATATCTGACTCTGACACGAAA
63 TTTTCGTATTTTTATATCTGACTCTGACACGAAA
45567420 TTTTTTTTTT
Statistics
Matches: 90, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
108 42 0.47
111 12 0.13
113 1 0.01
114 35 0.39
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (111 bp):
TTTTACTGTTCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTTTTTT
TCGTATTTTTATATCTGACTCTGACACGAAAAAAAAAGAAAAAAAA
Found at i:45567427 original size:214 final size:209
Alignment explanation
Indices: 45567050--45567487 Score: 671
Period size: 214 Copynumber: 2.1 Consensus size: 209
45567040 GTCCTATAAA
***
45567050 TTTTTTTTAGTTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAATTTTTTTAC
1 TTTTTTTTA-TTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAAAAATTTTAC
** **
45567115 TGTATACTGGGTGTCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTTAAAATTTTTTTCGTA
65 TGTATACTGGGTACCGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTAAAATTTTTTTCGTA
*
45567180 TTTTTATATCTGATTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACA
130 TTTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACA
45567245 GGCCAGCACCCAAAT
195 GGCCAGCACCCAAAT
*
45567260 TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAAATTTT
1 TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTAACACG-AAAAAAAAG--AAAAAATTTT
*
45567325 ACTGT-TCACTGGGTACCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTTAAATTTTTTT
63 ACTGTAT-ACTGGGTACCGGCCATTGACAGGCCAGCA-CC-AAAAATTTTTTTTTAAAATTTTTT
* * *
45567389 TTGTATTTTTATATCTGACTCTGACACGAAATTTTTTTTTTTACTGTTTACTGGGTGCCGGCCAT
125 TCGTATTTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCAT
*
45567454 TGACAGGCCAGCACCCAATT
190 TGACAGGCCAGCACCCAAAT
*
45567474 TTTTTTTTCTTTTT
1 TTTTTTTTATTTTT
45567488 CCTATATCAG
Statistics
Matches: 207, Mismatches: 15, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
209 33 0.16
210 18 0.09
211 1 0.00
212 39 0.19
213 2 0.01
214 114 0.55
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.44
Consensus pattern (209 bp):
TTTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTAACACGAAAAAAAAGAAAAAATTTTACT
GTATACTGGGTACCGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTAAAATTTTTTTCGTAT
TTTTATATCTGACTCTGACACGAAAATTTTTTTTTTACTGTTCACTGGGTGCCGGCCATTGACAG
GCCAGCACCCAAAT
Found at i:45569631 original size:40 final size:40
Alignment explanation
Indices: 45569587--45569759 Score: 102
Period size: 44 Copynumber: 4.1 Consensus size: 40
45569577 CCCTGAAGTT
*
45569587 GCAGTGGAACGGATTAAAACCA-CAGATCTTATCTCCCTAA
1 GCAGTGGAGCGGATTAAAACCACCA-ATCTTATCTCCCTAA
* ** * * *
45569627 GCAGT--AGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAA
1 GCAGTGGAGCGGATTAAAAC-CACCAA-TCTTATCTCCCTAA
* * ** *
45569667 GCAGTAGTGGAGCAGACTGAAAAAAACCAATCCTATCTCCCTAAA
1 GC---AGTGGAGCGGA-TTAAAACCACCAATCTTATCTCCCT-AA
45569712 GTTACAGTGGAGCGGATTAAAACCA-CAGATCTTATCTCCCTAA
1 G---CAGTGGAGCGGATTAAAACCACCA-ATCTTATCTCCCTAA
45569755 GCAGT
1 GCAGT
45569760 AGTGGAGCAG
Statistics
Matches: 98, Mismatches: 21, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
38 7 0.07
39 3 0.03
40 27 0.28
43 8 0.08
44 29 0.30
45 21 0.21
46 2 0.02
48 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (40 bp):
GCAGTGGAGCGGATTAAAACCACCAATCTTATCTCCCTAA
Found at i:45569636 original size:43 final size:43
Alignment explanation
Indices: 45569530--45569810 Score: 213
Period size: 40 Copynumber: 6.6 Consensus size: 43
45569520 AATTGTTATA
* ** * *
45569530 TATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAACA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
** * * * *
45569572 TATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACAGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
*** *
45569616 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCGCATCA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
* * *
45569656 TATCTCCCTAAGCAGTAGTGGAGCAGACTGAAAAAAACCA-ATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGA-TTAAAAACA-CAGATCT
* *
45569700 TATCTCCCTAA--AGTTACAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTAAGCAG-T--AGTGGAGCAGATTAAAAACACAGATCT
*** **
45569744 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCGCATTA-AG-TCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
45569784 TATCTCCCTAAGCAGTAGTGGAGCAGA
1 TATCTCCCTAAGCAGTAGTGGAGCAGA
45569811 CAAAAGAAAC
Statistics
Matches: 188, Mismatches: 38, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
40 60 0.32
41 4 0.02
42 19 0.10
43 46 0.24
44 46 0.24
45 11 0.06
46 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAAACACAGATCT
Found at i:45569756 original size:128 final size:127
Alignment explanation
Indices: 45569530--45569862 Score: 580
Period size: 128 Copynumber: 2.6 Consensus size: 127
45569520 AATTGTTATA
* *
45569530 TATCTCCTTAAGCAGTAGTGGAGCAGACGAAAAAAA-CAATCCTATCTCCCTGAAGTTGCAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTGG
*
45569594 AACGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
66 AGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
*
45569656 TATCTCCCTAAGCAGTAGTGGAGCAGACTGAAAAAAACCAATCCTATCTCCCTAAAGTTACAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTG
*
45569721 GAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTAAGTCT
65 GAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
45569784 TATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAA-AAACCAATCCTATCTCCCTAAAGTTGCAGTG
*
45569848 GAGCGAATTAAAACC
65 GAGCGGATTAAAACC
45569863 TAATCTCATC
Statistics
Matches: 197, Mismatches: 7, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
126 31 0.16
127 52 0.26
128 114 0.58
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (127 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTAAAGTTGCAGTGG
AGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
Found at i:45571467 original size:18 final size:20
Alignment explanation
Indices: 45571444--45571486 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
45571434 CATATACATG
45571444 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
45571462 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
*
45571482 TATAC
1 CATAC
45571487 TTATACATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:45572194 original size:110 final size:106
Alignment explanation
Indices: 45571967--45572195 Score: 255
Period size: 110 Copynumber: 2.1 Consensus size: 106
45571957 GGAAATTTTT
* * *
45571967 TTAAAAT-AAGGTAATATTTCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTGCTGGGTTTC
1 TTAAAATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGGTTTC
* *
45572031 GATTTCTCGTTCGACCAAATGACCAAATATCCTTTTAAACT
66 GATTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAACA
* * ** *
45572072 TTCAAAATAATAAAGGCAATATTCCGTATTTGGAAATTCGAGAAGCCGTGCCCTAATTTACTGGG
1 TT---AA-AATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGG
* *
45572137 TTTCGATTTTTCTCGTGTTGAACCTAAATAACCGAATATCCTTTTAAA-A
62 TTTCGA--TTTCTCGT-TCG-ACC-AAATAACCAAATATCCTTTTAAACA
45572186 TTAAAATAAA
1 TTAAAATAAA
45572196 TGAGGTTTAA
Statistics
Matches: 102, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
105 2 0.02
108 2 0.02
109 3 0.03
110 57 0.56
111 2 0.02
112 8 0.08
113 2 0.02
114 5 0.05
115 21 0.21
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (106 bp):
TTAAAATAAAGGCAATATTCCGCATTTGGAAAATCGAGAAAACGTGCCCTAATGTACTGGGTTTC
GATTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAACA
Found at i:45579531 original size:18 final size:19
Alignment explanation
Indices: 45579505--45579549 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
45579495 CTAGTTCTAT
*
45579505 TAAATAAATTATT-AAAAA
1 TAAAAAAATTATTAAAAAA
45579523 TAAAAAAA-TATTAAAAAA
1 TAAAAAAATTATTAAAAAA
45579541 TAAAAAAAT
1 TAAAAAAAT
45579550 CATGATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAAAAATTATTAAAAAA
Found at i:45580399 original size:3 final size:3
Alignment explanation
Indices: 45580391--45580433 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
45580381 TGTTCATGAC
45580391 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
45580434 CCAAATCAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:45581096 original size:52 final size:54
Alignment explanation
Indices: 45581023--45581178 Score: 165
Period size: 61 Copynumber: 2.8 Consensus size: 54
45581013 GTCCCGCAAT
*
45581023 TTTTTTTTTA-GTTTTGGGACACTGATGACCGGCACCAACTTTATC-AAATTAA
1 TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTATCTAAATTAA
* * * *
45581075 -TTTTTTTTAGGTTCTGGGACACTGATGGCTGGCAACAACACCAACTTTATCTGATTTAA
1 TTTTTTTTTAGGTTTTGGGACACTGATGGCCGG------CACCAACTTTATCTAAATTAA
* *
45581134 TTTTTTTTTTTGGTTTTGGAACACTGATGGCCGGCACCAACTTTA
1 -TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTA
45581179 ACAGATATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
51 9 0.11
52 19 0.22
55 11 0.13
58 13 0.15
59 5 0.06
61 28 0.33
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (54 bp):
TTTTTTTTTAGGTTTTGGGACACTGATGGCCGGCACCAACTTTATCTAAATTAA
Found at i:45584444 original size:11 final size:11
Alignment explanation
Indices: 45584411--45584452 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
45584401 TATATTGAAT
45584411 TGAAATTAAAA
1 TGAAATTAAAA
* *
45584422 TTGGACTTAAAA
1 -TGAAATTAAAA
45584434 TGAAATTAAAA
1 TGAAATTAAAA
45584445 TGAAATTA
1 TGAAATTA
45584453 TATTTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (11 bp):
TGAAATTAAAA
Found at i:45584485 original size:18 final size:17
Alignment explanation
Indices: 45584439--45584478 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
45584429 TAAAATGAAA
*
45584439 TTAAAATGAAATTATAT
1 TTAAAATGAAAATATAT
45584456 TTAAAATGAAAATATAT
1 TTAAAATGAAAATATAT
45584473 TTAAAA
1 TTAAAA
45584479 AAGAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
TTAAAATGAAAATATAT
Found at i:45584486 original size:19 final size:17
Alignment explanation
Indices: 45584439--45584485 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
45584429 TAAAATGAAA
* *
45584439 TTAAAATGAAATTATAT
1 TTAAAAAGAAAATATAT
*
45584456 TTAAAATGAAAATATAT
1 TTAAAAAGAAAATATAT
45584473 TTAAAAAAGAAAA
1 TT-AAAAAGAAAA
45584486 AAAAATATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
TTAAAAAGAAAATATAT
Found at i:45584667 original size:38 final size:38
Alignment explanation
Indices: 45584632--45584753 Score: 130
Period size: 38 Copynumber: 3.3 Consensus size: 38
45584622 ATTAAAAATT
*
45584632 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAATA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
* * * * *
45584670 AAAAAA-G-CA---AAATGAA-ATTCAAATAAAATGAGA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAA-AAGA
45584703 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
45584741 AAAAAAGTGAAAT
1 AAAAAA-TGAAAT
45584754 GAAATTCAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
32 9 0.14
33 15 0.23
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 22 0.34
39 15 0.23
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.23
Consensus pattern (38 bp):
AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGA
Found at i:45584706 original size:33 final size:33
Alignment explanation
Indices: 45584669--45584783 Score: 90
Period size: 33 Copynumber: 3.3 Consensus size: 33
45584659 ATTAAAAAAT
*
45584669 AAAAAAAGCAAAATGAAATTCAAATAAAATGAG
1 AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
* * * *
45584702 AAAAAAATGAAATTCAAATGAAGTTTTAATTAAAA-AAG
1 AAAAAAA-G-AA---AAATGAA-ATTCAAATAAAATGAG
**
45584740 AAAAAAAGTGAAATGAAATTCAAATAAAATGA-
1 AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
45584772 AAAAAAACGAAA
1 AAAAAAA-GAAA
45584784 TTCAAATGAA
Statistics
Matches: 61, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
32 16 0.26
33 17 0.28
34 1 0.02
35 1 0.02
37 1 0.02
38 16 0.26
39 9 0.15
ACGTcount: A:0.66, C:0.04, G:0.11, T:0.18
Consensus pattern (33 bp):
AAAAAAAGAAAAATGAAATTCAAATAAAATGAG
Found at i:45584712 original size:71 final size:70
Alignment explanation
Indices: 45584632--45584793 Score: 279
Period size: 71 Copynumber: 2.3 Consensus size: 70
45584622 ATTAAAAATT
*
45584632 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAATAAAAAAAGCAAAATGAAATTCAAATAAA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
45584697 ATGAGA
66 ATGA-A
**
45584703 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAAA
1 AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
45584768 ATGAA
66 ATGAA
*
45584773 AAAAAACGAAATTCAAATGAA
1 AAAAAATGAAATTCAAATGAA
45584794 ATTTAAAAAG
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
70 21 0.24
71 66 0.76
ACGTcount: A:0.64, C:0.04, G:0.10, T:0.22
Consensus pattern (70 bp):
AAAAAATGAAATTCAAATGAAGTTTTAATTAAAAAAGAAAAAAAGCAAAATGAAATTCAAATAAA
ATGAA
Found at i:45584801 original size:26 final size:23
Alignment explanation
Indices: 45584754--45584817 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 23
45584744 AAAGTGAAAT
*
45584754 GAAATTCAAATAAAATGAAAAAAAA
1 GAAATTCAAATGAAATG--AAAAAA
**
45584779 CGAAATTCAAATGAAATTTAAAAA
1 -GAAATTCAAATGAAATGAAAAAA
*
45584803 GAAATTGAAATGAAA
1 GAAATTCAAATGAAA
45584818 AAAAATTGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 14 0.41
24 5 0.15
26 15 0.44
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (23 bp):
GAAATTCAAATGAAATGAAAAAA
Found at i:45584801 original size:33 final size:33
Alignment explanation
Indices: 45584632--45584806 Score: 86
Period size: 33 Copynumber: 5.0 Consensus size: 33
45584622 ATTAAAAATT
* * * *
45584632 AAAAAATGAAATTCAAATGAAGTTT-TAATTAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
**
45584664 AAAATAAA-AAAAGCAAAATGAAATTCAAATAAAATGAGA
1 AAAA-AAAGAAATTC-AAATGAAATT----TAAAATGA-A
* * * *
45584703 AAAAAATGAAATTCAAATGAAGTTT-TAATTAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
* * *
45584735 AAAAGAAAAAAAGTGAAATGAAATTCAAATAAAATGAA
1 AAAA-AAAGAAATTCAAATGAAATT----TAAAATGAA
* *
45584773 AAAAAACGAAATTCAAATGAAATTTAAAAAGAA
1 AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
45584806 A
1 A
45584807 TTGAAATGAA
Statistics
Matches: 104, Mismatches: 24, Indels: 29
0.66 0.15 0.18
Matches are distributed among these distances:
32 13 0.12
33 39 0.38
34 1 0.01
37 18 0.17
38 24 0.23
39 9 0.09
ACGTcount: A:0.64, C:0.04, G:0.10, T:0.22
Consensus pattern (33 bp):
AAAAAAAGAAATTCAAATGAAATTTAAAATGAA
Found at i:45584887 original size:17 final size:17
Alignment explanation
Indices: 45584867--45584900 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45584857 AAAAATAAGT
45584867 GAAATGAAATTCAAATA
1 GAAATGAAATTCAAATA
*
45584884 GAAATGAAGTTCAAATA
1 GAAATGAAATTCAAATA
45584901 ACATGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
GAAATGAAATTCAAATA
Found at i:45584936 original size:124 final size:120
Alignment explanation
Indices: 45584716--45585132 Score: 395
Period size: 124 Copynumber: 3.4 Consensus size: 120
45584706 AAATGAAATT
45584716 CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATA-AAATGAA---AAAA
1 CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATGAATTCAAAA
** *
45584777 AACGAAATTCAAATGAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACATC-A
66 AACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACA-CGA
* *
45584832 CAAAATGATA-TTTTAATTGAAAAGGAAAAATAAGTGAAATGAAATTCAAATAGAAATGAAGTTC
1 C-AAATGA-AGTTTTAATTAAAAAAGAAAAA-AAGTGAAATGAAATTCAAATAGAAATGAA-TTC
* * *
45584896 AAATAACATGAAA-AAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAGATTGATACGA
62 AAA-AA-ACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACACGA
* * *
45584956 CAAATGAAGTTTTTAATTAAAAAATAAAAAAA-TGAAATGAAATTTAAATTGAAATGAAATTCAT
1 CAAATGAAG-TTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATG-AATTCA-
* * * * * *
45585020 GAGAAAA-AAAATTAAATTCAAATGAATTTTAAAAAGAAATTAAAATTATAAAAAAAATT-ACAT
63 -A-AAAACGAAA-T-AA---AAATAAAATTTAAAAAGAAATTGAAA-T-GAAAAAAAATTGACAC
45585083 GA
119 GA
* *
45585085 CAAATGAAGTTTTTAATTGAAAAAGAAAAAAAAAGTAAAATGAAATTC
1 CAAATGAAG-TTTTAATT-AAAAA-AGAAAAAAAGTGAAATGAAATTC
45585133 TGAAATTCAA
Statistics
Matches: 249, Mismatches: 24, Indels: 40
0.80 0.08 0.13
Matches are distributed among these distances:
116 1 0.00
117 24 0.10
118 22 0.09
119 7 0.03
122 30 0.12
123 15 0.06
124 63 0.25
125 8 0.03
128 23 0.09
129 23 0.09
130 14 0.06
131 8 0.03
132 11 0.04
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.25
Consensus pattern (120 bp):
CAAATGAAGTTTTAATTAAAAAAGAAAAAAAGTGAAATGAAATTCAAATAGAAATGAATTCAAAA
AACGAAATAAAAATAAAATTTAAAAAGAAATTGAAATGAAAAAAAATTGACACGA
Found at i:45585077 original size:18 final size:19
Alignment explanation
Indices: 45585044--45585079 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45585034 AATTCAAATG
*
45585044 AATTTTAAAAAGAAATTAA
1 AATTATAAAAAGAAATTAA
45585063 AATTATAAAAA-AAATTA
1 AATTATAAAAAGAAATTA
45585080 CATGACAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
AATTATAAAAAGAAATTAA
Found at i:45585208 original size:20 final size:20
Alignment explanation
Indices: 45585167--45585209 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
45585157 GGTTGAAATG
*
45585167 AAATTAAAATGACAAGAGAA
1 AAATTAAAATGACAAGAAAA
*
45585187 AAATTAAATTGA-AATGAAAA
1 AAATTAAAATGACAA-GAAAA
45585207 AAA
1 AAA
45585210 AAGGTTGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (20 bp):
AAATTAAAATGACAAGAAAA
Found at i:45586652 original size:88 final size:88
Alignment explanation
Indices: 45586460--45586703 Score: 294
Period size: 88 Copynumber: 2.7 Consensus size: 88
45586450 TTAAAAAAAT
* * ** *
45586460 AAATATATAATTCGAAAAATTAATAATAC-GCAAC-AAATTAAATTTACAGATACAAGAAAATAT
1 AAATATAAAATTCGAACAACAAATAATACAG--ACTAAATTAAATTTACAGATACAA-AAAATAC
* * * *
45586523 AAATATTCTAGAATATTAATACAAGG
63 AAACATTCTAAAAAATTAATACAAGA
45586549 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
1 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
*
45586614 CATTCTAAAAAATTAATACACGA
66 CATTCTAAAAAATTAATACAAGA
* * * **
45586637 AAATATAAAATTCGAACAACAAATAATAAATATTAAATTTGATTTACAGATACAAAAATAATACA
1 AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATAC-AAAA-AATACA
45586702 AA
64 AA
45586704 AATTTTGAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
88 77 0.57
89 50 0.37
90 9 0.07
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.26
Consensus pattern (88 bp):
AAATATAAAATTCGAACAACAAATAATACAGACTAAATTAAATTTACAGATACAAAAAATACAAA
CATTCTAAAAAATTAATACAAGA
Found at i:45587042 original size:28 final size:27
Alignment explanation
Indices: 45586973--45587045 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 27
45586963 AGTTGTGCAT
* * *
45586973 TACAAAACACTCCCATCTGCAATCCAC
1 TACAAAACACTCTCATTTGCAATACAC
* ** *
45587000 TACAAAAAAAACTCATTTGATAATACAC
1 TACAAAACACTCTCATTTG-CAATACAC
45587028 TACAAAACACTCTCATTT
1 TACAAAACACTCTCATTT
45587046 TCATAGCACT
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.44, C:0.29, G:0.03, T:0.25
Consensus pattern (27 bp):
TACAAAACACTCTCATTTGCAATACAC
Found at i:45587256 original size:51 final size:51
Alignment explanation
Indices: 45587201--45587361 Score: 146
Period size: 53 Copynumber: 3.1 Consensus size: 51
45587191 TTTTCTAAAA
*
45587201 CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCGGGCCATTAGTGTC
1 CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
* **** * * * * *
45587252 CCAAAACCAAAAAAAAAAAAAATCTGAAAAAGTTGGTACTGGTCATCAGTGTC
1 CCAAAA--AAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
* * *
45587305 CCAGAACCAAAAT-TTTT-TAATCTGATAAAGTTGGTGCCGGCCATTAGTATC
1 CCA-AA-AAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
45587356 CCAAAA
1 CCAAAA
45587362 CTAAAAAAAA
Statistics
Matches: 82, Mismatches: 24, Indels: 10
0.71 0.21 0.09
Matches are distributed among these distances:
50 2 0.02
51 36 0.44
53 42 0.51
54 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (51 bp):
CCAAAAAAAATATTTTAAAATCTGATAAAGTTGGTGCCGGCCATTAGTGTC
Found at i:45595889 original size:20 final size:20
Alignment explanation
Indices: 45595864--45595924 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
45595854 TTGAAATGCT
45595864 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
45595884 AACAGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
*
45595904 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCACCGAAGTGCA
45595924 A
1 A
45595925 TCCCATACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.43, C:0.25, G:0.28, T:0.05
Consensus pattern (20 bp):
AACAGAGGCACCGAAGTGCA
Found at i:45602683 original size:19 final size:18
Alignment explanation
Indices: 45602659--45602699 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
45602649 CTTTTCTTCC
45602659 TTTTTCTATTCCATTGTAA
1 TTTTTCT-TTCCATTGTAA
**
45602678 TTTTTCTTTCTTTTGTAA
1 TTTTTCTTTCCATTGTAA
45602696 TTTT
1 TTTT
45602700 AGTAGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTTCTTTCCATTGTAA
Found at i:45611160 original size:25 final size:25
Alignment explanation
Indices: 45611090--45611146 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
45611080 ATTTTTAGAT
* *
45611090 TGACAGTTCATTAT-AGAATCAAAA
1 TGACATTTCATTTTCAGAATCAAAA
*
45611114 TGACATATCATTTTCAGAATCAAAA
1 TGACATTTCATTTTCAGAATCAAAA
45611139 TGACATTT
1 TGACATTT
45611147 GATTATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (25 bp):
TGACATTTCATTTTCAGAATCAAAA
Found at i:45614014 original size:20 final size:20
Alignment explanation
Indices: 45613989--45614034 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
45613979 TATATTCAAT
45613989 AATATTCAATTAAAAATAAA
1 AATATTCAATTAAAAATAAA
* ***
45614009 AATATTTAATTAGTTATAAA
1 AATATTCAATTAAAAATAAA
45614029 AATATT
1 AATATT
45614035 TTAATTATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
AATATTCAATTAAAAATAAA
Found at i:45614049 original size:21 final size:20
Alignment explanation
Indices: 45614004--45614045 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45613994 TCAATTAAAA
*
45614004 ATAAAAATATTTAATTAGTT
1 ATAAAAATATTTAATTAGTC
45614024 ATAAAAATATTTTAATTA-TC
1 ATAAAAATA-TTTAATTAGTC
45614044 AT
1 AT
45614046 TAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAAAAATATTTAATTAGTC
Found at i:45615554 original size:3 final size:3
Alignment explanation
Indices: 45615546--45615594 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
45615536 TTTTCCGTAG
45615546 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45615594 T
1 T
45615595 CTAAAAAATC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:45617262 original size:18 final size:17
Alignment explanation
Indices: 45617239--45617273 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45617229 TTGTTTATTG
45617239 ATTAAAAAATTTGTAAAA
1 ATTAAAAAATTT-TAAAA
*
45617257 ATTAAAAAGTTTTAAAA
1 ATTAAAAAATTTTAAAA
45617274 TGGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (17 bp):
ATTAAAAAATTTTAAAA
Found at i:45617349 original size:39 final size:38
Alignment explanation
Indices: 45617262--45617363 Score: 116
Period size: 39 Copynumber: 2.6 Consensus size: 38
45617252 TAAAAATTAA
* * * *
45617262 AAAGTTTT-AAAATGGTAAAAAAATTATAAAAGTTGTT
1 AAAGTTTTAAAAATTGTAAAAAAAATATAAAAATTCTT
*
45617299 AAATTTCTTAAAAATTGTAAAAAAAATATAAAAATTCTT
1 AAAGTT-TTAAAAATTGTAAAAAAAATATAAAAATTCTT
*
45617338 AAAGATTTTAAAAATATATAAAAAAA
1 AAAG-TTTTAAAAAT-TGTAAAAAAA
45617364 TTTGGAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
37 5 0.09
38 2 0.04
39 36 0.67
40 11 0.20
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (38 bp):
AAAGTTTTAAAAATTGTAAAAAAAATATAAAAATTCTT
Found at i:45617362 original size:30 final size:30
Alignment explanation
Indices: 45617303--45617361 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
45617293 GTTGTTAAAT
45617303 TTCTTAAAAATTGTAAAAAAAATATAAAAA
1 TTCTTAAAAATTGTAAAAAAAATATAAAAA
* * *
45617333 TTCTTAAAGATT-TTAAAAATATATAAAAA
1 TTCTTAAAAATTGTAAAAAAAATATAAAAA
45617362 AATTTGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (30 bp):
TTCTTAAAAATTGTAAAAAAAATATAAAAA
Found at i:45618007 original size:13 final size:13
Alignment explanation
Indices: 45617989--45618021 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
45617979 AGTCCGCCCG
45617989 TATTAATTTTTTA
1 TATTAATTTTTTA
45618002 TATTAA-TTTTTA
1 TATTAATTTTTTA
45618014 TA-TAATTT
1 TATTAATTT
45618022 CTTGTTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 10 0.53
13 6 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTAATTTTTTA
Found at i:45618515 original size:9 final size:9
Alignment explanation
Indices: 45618501--45618641 Score: 52
Period size: 9 Copynumber: 14.8 Consensus size: 9
45618491 CTGCTTAAAT
45618501 ATTTTTATA
1 ATTTTTATA
45618510 ATTTTTA-A
1 ATTTTTATA
45618518 ATATTTTAT-
1 AT-TTTTATA
*
45618527 ATTTTAAAATA
1 ATTTT--TATA
**
45618538 ATTTTTACC
1 ATTTTTATA
* *
45618547 ATTTTAAGA
1 ATTTTTATA
* * *
45618556 ATTCGTAACA
1 ATT-TTTATA
45618566 AATTTTTAATA
1 -ATTTTT-ATA
*
45618577 ATTTTTACA
1 ATTTTTATA
*
45618586 ACTTTTTACA
1 A-TTTTTATA
*
45618596 ATTTTTAAGA
1 ATTTTT-ATA
**
45618606 ATGCTTATA
1 ATTTTTATA
*
45618615 ATTTTTTTA
1 ATTTTTATA
45618624 CTATTTTTATA
1 --ATTTTTATA
45618635 ATTTTTA
1 ATTTTTA
45618642 ATATTTTAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 24
0.69 0.15 0.17
Matches are distributed among these distances:
8 6 0.06
9 47 0.47
10 28 0.28
11 18 0.18
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (9 bp):
ATTTTTATA
Found at i:45618519 original size:19 final size:18
Alignment explanation
Indices: 45618495--45618544 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
45618485 ACTGAACTGC
45618495 TTAAATATTTTTATAATTT
1 TTAAATATTTTTAT-ATTT
45618514 TTAAATA-TTTTATATTT
1 TTAAATATTTTTATATTT
*
45618531 TAAAATAATTTTTA
1 TTAAAT-ATTTTTA
45618545 CCATTTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTAAATATTTTTATATTT
Found at i:45618526 original size:18 final size:17
Alignment explanation
Indices: 45618495--45618542 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 17
45618485 ACTGAACTGC
45618495 TTAAATATTTTTATAATTT
1 TTAAATA-TTTTAT-ATTT
45618514 TTAAATATTTTATATTT
1 TTAAATATTTTATATTT
*
45618531 TAAAATAATTTT
1 TTAAAT-ATTTT
45618543 TACCATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.33
18 11 0.41
19 7 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAAATATTTTATATTT
Found at i:45618581 original size:10 final size:9
Alignment explanation
Indices: 45618566--45618641 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
45618556 ATTCGTAACA
45618566 AATTTTTAAT
1 AATTTTT-AT
*
45618576 AATTTTTAC
1 AATTTTTAT
*
45618585 AACTTTTTAC
1 AA-TTTTTAT
*
45618595 AATTTTTAAG
1 AATTTTT-AT
**
45618605 AATGCTTAT
1 AATTTTTAT
*
45618614 AATTTTTTT
1 AATTTTTAT
45618623 ACTATTTTTAT
1 A--ATTTTTAT
45618634 AATTTTTA
1 AATTTTTA
45618642 ATATTTTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
9 23 0.43
10 22 0.42
11 8 0.15
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.58
Consensus pattern (9 bp):
AATTTTTAT
Found at i:45618586 original size:20 final size:19
Alignment explanation
Indices: 45618563--45618602 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45618553 AGAATTCGTA
*
45618563 ACAAATTTTTAATAATTTTT
1 ACAAATTTTT-ACAATTTTT
*
45618583 ACAACTTTTTACAATTTTT
1 ACAAATTTTTACAATTTTT
45618602 A
1 A
45618603 AGAATGCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
ACAAATTTTTACAATTTTT
Found at i:45618598 original size:29 final size:30
Alignment explanation
Indices: 45618566--45618641 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 30
45618556 ATTCGTAACA
45618566 AATTTTTAATAATTTTTACAA-CTTTTTAC
1 AATTTTTAATAATTTTTACAATCTTTTTAC
* ** * *
45618595 AATTTTTAAGAATGCTTATAATTTTTTTAC
1 AATTTTTAATAATTTTTACAATCTTTTTAC
*
45618625 TATTTTT-ATAATTTTTA
1 AATTTTTAATAATTTTTA
45618642 ATATTTTAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 24 0.65
30 13 0.35
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.58
Consensus pattern (30 bp):
AATTTTTAATAATTTTTACAATCTTTTTAC
Found at i:45618659 original size:30 final size:30
Alignment explanation
Indices: 45618625--45618701 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
45618615 ATTTTTTTAC
*
45618625 TATTTTTATAATTTTTAAT-ATTTTAAAA-
1 TATTTTTATAATTTTAAATAATTTTAAAAT
* *
45618653 TATATTTATATATTGTAAAATAATTTTAAAAT
1 TATTTTTATA-ATT-TTAAATAATTTTAAAAT
*
45618685 GATTTTTACTAATTTTA
1 TATTTTTA-TAATTTTA
45618702 TCAATTTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
28 9 0.24
29 3 0.08
30 4 0.11
31 11 0.29
32 9 0.24
33 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (30 bp):
TATTTTTATAATTTTAAATAATTTTAAAAT
Found at i:45618680 original size:20 final size:21
Alignment explanation
Indices: 45618632--45618680 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
45618622 TACTATTTTT
*
45618632 ATAATTTT-TAATATTTTAAA
1 ATAATTTTATAATATTGTAAA
45618652 AT-ATATTTAT-ATATTGTAAA
1 ATAAT-TTTATAATATTGTAAA
45618672 ATAATTTTA
1 ATAATTTTA
45618681 AAATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
ATAATTTTATAATATTGTAAA
Found at i:45625252 original size:43 final size:43
Alignment explanation
Indices: 45625205--45625736 Score: 620
Period size: 43 Copynumber: 12.4 Consensus size: 43
45625195 ACGCAATTAA
* * *
45625205 ACTGGCACACACAGTGCATCATCGAATAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
45625248 ACTGGCACACATAGTGCATTATTGGATAAAACCGAATCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
45625291 ACTGGCACATACAGTACATCATTGGATAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
45625334 ATTGGCACACACAATGCATCATCGGGTAATACCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * * *
45625377 ACAGGCGCACACAGTGCATCATTGGGTAATACCGAAGCAAGAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
*
45625420 A-TCGGCACACACAGTGCATCATCAGG-TAATACCGAAGCAACAT
1 ACT-GGCACACACAGTGCATCAT-TGGATAATACCGAAGCAACAT
* * * * * *
45625463 ACTAGCTCACATAGTGCATCATCAGG-TAATACGGAAGAAACAT
1 ACTGGCACACACAGTGCATCAT-TGGATAATACCGAAGCAACAT
* * * * * *
45625506 ACTAGCACACATAGTGCATTATCGGTTAATACCAAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
45625549 ACTGGCACACACAGTGTATCATTGGGTAATACCGAAGCAATAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* *
45625592 ACTGGCACATACAGTGCATCATTGGATAATATCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
45625635 ACTGGCACAAATAGTGCATCATTGGATAATATCGAAGCAACAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* * *
45625678 ACTGGCACACATAGTGCATCATTGGATAATATCGAAGCAAGAT
1 ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
* *
45625721 ACTGACACATACAGTG
1 ACTGGCACACACAGTG
45625737 AGTCATCAGA
Statistics
Matches: 423, Mismatches: 62, Indels: 8
0.86 0.13 0.02
Matches are distributed among these distances:
42 2 0.00
43 418 0.99
44 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (43 bp):
ACTGGCACACACAGTGCATCATTGGATAATACCGAAGCAACAT
Found at i:45631921 original size:25 final size:24
Alignment explanation
Indices: 45631892--45631948 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
45631882 TTACTGATAC
*
45631892 ACAGCTCGCATGAGCTTACCATTAT
1 ACAGCTCGCAGGAGCTTACCATT-T
* * *
45631917 TCAGCTTGGAGGAGCTTACCATTT
1 ACAGCTCGCAGGAGCTTACCATTT
45631941 ACAGCTCG
1 ACAGCTCG
45631949 TAAGAGTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (24 bp):
ACAGCTCGCAGGAGCTTACCATTT
Found at i:45639667 original size:24 final size:25
Alignment explanation
Indices: 45639640--45639693 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
45639630 GTCATTAAGG
* *
45639640 TTACCAAT-TTCAGCTCATATGAGT
1 TTACCAATACTCAGCTCATATGAGC
* *
45639664 TTACCGATACTCAGCTCGTATGAGC
1 TTACCAATACTCAGCTCATATGAGC
45639689 TTACC
1 TTACC
45639694 GTTATTCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (25 bp):
TTACCAATACTCAGCTCATATGAGC
Found at i:45639706 original size:25 final size:25
Alignment explanation
Indices: 45639648--45639762 Score: 94
Period size: 25 Copynumber: 4.6 Consensus size: 25
45639638 GGTTACCAAT
* * *
45639648 TTCAGCTCATATGAGTTTACCGATA
1 TTCAGCTCGTATGAGCTTACCGTTA
*
45639673 CTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* *
45639698 TTCAGCTCGGAGGAGCTTACC-TT-
1 TTCAGCTCGTATGAGCTTACCGTTA
* * *
45639721 TTACAGCTTGTAAGAGCATACCG--A
1 TT-CAGCTCGTATGAGCTTACCGTTA
45639745 TTCGGAGCTCGTATGAGC
1 TTC--AGCTCGTATGAGC
45639763 ATACATGTAC
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
23 3 0.04
24 19 0.26
25 50 0.69
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCGTTA
Found at i:45650115 original size:45 final size:45
Alignment explanation
Indices: 45650034--45650125 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
45650024 AGTGTCCGTG
* *
45650034 ATTATGTACTTGCTTATATGATTATACGTCTATATGATTGCACGA
1 ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
* * * *
45650079 ATTATGTACTTGTTTATACGAATGTACTTCTGTATGATTGCACGA
1 ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
45650124 AT
1 AT
45650126 AGAAGTGCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (45 bp):
ATTATGTACTTGCTTATACGAATATACGTCTATATGATTGCACGA
Found at i:45650982 original size:25 final size:25
Alignment explanation
Indices: 45650938--45650991 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
45650928 CAAAATTTAG
45650938 AAATAAAATTATTTTGTAAT-TAATT
1 AAATAAAATTATTTTGTAATCT-ATT
*
45650963 AAATAGAATTATTTAT-TAATCTATT
1 AAATAAAATTATTT-TGTAATCTATT
45650988 AAAT
1 AAAT
45650992 TGGTTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (25 bp):
AAATAAAATTATTTTGTAATCTATT
Found at i:45672987 original size:20 final size:20
Alignment explanation
Indices: 45672959--45672997 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45672949 ATAGTATTTT
45672959 ATTAATTTAATATTAAATTG
1 ATTAATTTAATATTAAATTG
*
45672979 ATTATTTTAATATTAAATT
1 ATTAATTTAATATTAAATT
45672998 AAATAAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTAATTTAATATTAAATTG
Found at i:45675100 original size:73 final size:73
Alignment explanation
Indices: 45675009--45675149 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
45674999 ACAAAGATAA
* ** *
45675009 TAATTAGTGAATCTTTATTGTTTTTCCGTTCAAATATGTCTCAT-ACTCCTCTTATTAGCATTCT
1 TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTC-TCACTCCTCTTATTAGCATACT
45675073 TACTAAGAC
65 TACTAAGAC
*
45675082 TAATTAGTGAATCTTTATTATTTTTCAATTTAAATATGTCTCTCACTCCTCTTATTAGCATACTT
1 TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTCTCACTCCTCTTATTAGCATACTT
45675147 ACT
66 ACT
45675150 GAGAATAAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.02
73 61 0.98
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (73 bp):
TAATTAGTGAATCTTTATTATTTTTCAATTCAAATATGTCTCTCACTCCTCTTATTAGCATACTT
ACTAAGAC
Found at i:45678546 original size:12 final size:11
Alignment explanation
Indices: 45678520--45678553 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
45678510 TAGACCCAGG
45678520 ATGAATTAATT
1 ATGAATTAATT
*
45678531 ATGAATTCATTT
1 ATGAATT-AATT
45678543 ATGAATTAATT
1 ATGAATTAATT
45678554 CACTTGTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (11 bp):
ATGAATTAATT
Found at i:45684185 original size:18 final size:19
Alignment explanation
Indices: 45684159--45684201 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
45684149 TTTCCCAAAA
45684159 TAAATATT-ATTTACTAAAT
1 TAAATATTAATTTACT-AAT
*
45684178 TAAA-ATTAATTTTCTAAT
1 TAAATATTAATTTACTAAT
45684196 TAAATA
1 TAAATA
45684202 ATTTTCTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAATATTAATTTACTAAT
Found at i:45687540 original size:21 final size:20
Alignment explanation
Indices: 45687495--45687541 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 20
45687485 ATTAAAATAT
* *
45687495 AAAA-ATCAAAAAATTTTAT
1 AAAATATCAAAAAATTATAA
*
45687514 AGAATATCATAAAAATTATAA
1 AAAATATCA-AAAAATTATAA
45687535 AAAATAT
1 AAAATAT
45687542 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.14
20 4 0.18
21 15 0.68
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAATATCAAAAAATTATAA
Found at i:45687589 original size:35 final size:34
Alignment explanation
Indices: 45687550--45687622 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 34
45687540 ATTTTTAAAA
*
45687550 ATAAAATAT-ATATAAAAGTAAAAAAATAGGAAATT
1 ATAAAAT-TCATATAAAAGAAAAAAAATA-GAAATT
* * *
45687585 ATAAAATTCTTATAAATGAAAAAAAATATAAATT
1 ATAAAATTCATATAAAAGAAAAAAAATAGAAATT
45687619 ATAA
1 ATAA
45687623 GAAATGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 10 0.30
35 23 0.70
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (34 bp):
ATAAAATTCATATAAAAGAAAAAAAATAGAAATT
Found at i:45687849 original size:40 final size:39
Alignment explanation
Indices: 45687766--45687857 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 39
45687756 GAAAAGTGCA
**
45687766 AAAAATA-TAAAAAAATAGAAAATTACAGTAATATTATT
1 AAAAATATTAAAAAAATAGAAAATTACAAAAATATTATT
*
45687804 AAAAATATTCAAAAAAATATAAAATTACAAAAAGTA-TA-T
1 AAAAATATT-AAAAAAATAGAAAATTACAAAAA-TATTATT
45687843 ATAAAATA-TAAAAAA
1 A-AAAATATTAAAAAA
45687858 TGTCTATAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
38 13 0.28
39 4 0.09
40 28 0.60
41 2 0.04
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (39 bp):
AAAAATATTAAAAAAATAGAAAATTACAAAAATATTATT
Found at i:45688118 original size:10 final size:10
Alignment explanation
Indices: 45688105--45688133 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
45688095 AAATTTTTCC
45688105 AAATATTTTT
1 AAATATTTTT
45688115 AAATATTTTT
1 AAATATTTTT
45688125 AAATATTTT
1 AAATATTTT
45688134 ATGCTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AAATATTTTT
Found at i:45688200 original size:9 final size:9
Alignment explanation
Indices: 45688188--45688378 Score: 90
Period size: 10 Copynumber: 20.6 Consensus size: 9
45688178 TTATTAAAAC
*
45688188 TTTTAATAA
1 TTTTTATAA
45688197 TTTTTAT-A
1 TTTTTATAA
45688205 -TTTTATATA
1 TTTTTATA-A
45688214 TTTTTATAA
1 TTTTTATAA
*
45688223 TTTTTTACAA
1 -TTTTTATAA
*
45688233 TTTTTTTTATA
1 -TTTTTATA-A
45688244 TTTTTCATAA
1 TTTTT-ATAA
* *
45688254 TTTATATAT
1 TTTTTATAA
45688263 TTTTTATAA
1 TTTTTATAA
*
45688272 --TTTATAT
1 TTTTTATAA
45688279 TTATTTATAATA
1 TT-TTTAT-A-A
*
45688291 TTTTTGTAA
1 TTTTTATAA
45688300 TTTTTTAATAA
1 -TTTTT-ATAA
**
45688311 AATTTATAA
1 TTTTTATAA
*
45688320 TTTATATAAA
1 TTTTTAT-AA
45688330 TTTTT-TCAA
1 TTTTTAT-AA
* *
45688339 TTATAATAA
1 TTTTTATAA
* *
45688348 ATTTTACAA
1 TTTTTATAA
45688357 TTTTCTAT-A
1 TTTT-TATAA
45688366 -TTTTATAA
1 TTTTTATAA
45688374 TTTTT
1 TTTTT
45688379 GCGCTTTATA
Statistics
Matches: 136, Mismatches: 28, Indels: 36
0.68 0.14 0.18
Matches are distributed among these distances:
7 15 0.11
8 5 0.04
9 48 0.35
10 55 0.40
11 11 0.08
12 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:45688240 original size:39 final size:40
Alignment explanation
Indices: 45688197--45688306 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 40
45688187 CTTTTAATAA
45688197 TTTTTATATTTTAT-ATATTTTTATAATTTTTTACAATTT
1 TTTTTATATTTTATAATATTTTTATAATTTTTTACAATTT
* * *
45688236 TTTTTATATTTT-TCATA-ATTTATATATTTTTTATAATTT
1 TTTTTATATTTTATAATATTTTTATA-ATTTTTTACAATTT
* * *
45688275 ATATT-TA-TTTATAATATTTTTGTAATTTTTTA
1 TTTTTATATTTTATAATATTTTTATAATTTTTTA
45688307 ATAAAATTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
37 3 0.05
38 21 0.35
39 36 0.60
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (40 bp):
TTTTTATATTTTATAATATTTTTATAATTTTTTACAATTT
Found at i:45688255 original size:21 final size:22
Alignment explanation
Indices: 45688214--45688256 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
45688204 ATTTTATATA
*
45688214 TTTTTATAATTTTTTACAATTT
1 TTTTTATAATTTTTCACAATTT
*
45688236 TTTTTAT-ATTTTTCATAATTT
1 TTTTTATAATTTTTCACAATTT
45688257 ATATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTTATAATTTTTCACAATTT
Found at i:45688320 original size:66 final size:66
Alignment explanation
Indices: 45688189--45688334 Score: 165
Period size: 66 Copynumber: 2.2 Consensus size: 66
45688179 TATTAAAACT
* * **
45688189 TTTA-ATAATTTTTATATTTTATATATTTTTATAATTTTTTACAATTTTTTTTATATTTTTCATA
1 TTTATATAATTTTTATAATTTATATATTTTTATAATTTTTTACAATTTTTTATATAAATTTCATA
45688253 A
66 A
* **
45688254 TTTATATATTTTTTATAATTTATAT-TTATTTATAATATTTTTGTAATTTTTTA-ATAAAATTT-
1 TTTATATAATTTTTATAATTTATATATT-TTTATAAT-TTTTTACAATTTTTTATAT-AAATTTC
45688316 ATAA
63 ATAA
45688320 TTTATATAAATTTTT
1 TTTATAT-AATTTTT
45688335 TCAATTATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
65 6 0.09
66 39 0.57
67 23 0.34
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (66 bp):
TTTATATAATTTTTATAATTTATATATTTTTATAATTTTTTACAATTTTTTATATAAATTTCATA
A
Found at i:45688396 original size:9 final size:9
Alignment explanation
Indices: 45688109--45688378 Score: 97
Period size: 9 Copynumber: 28.7 Consensus size: 9
45688099 TTTTCCAAAT
*
45688109 ATTTTTAAA
1 ATTTTTATA
45688118 TATTTTTA-A
1 -ATTTTTATA
*
45688127 ATATTTTATG
1 AT-TTTTATA
* *
45688137 CTTTTTATG
1 ATTTTTATA
* *
45688146 CTTTTTATG
1 ATTTTTATA
*
45688155 TTTTTTATA
1 ATTTTTATA
*
45688164 ATATTTTGTTA
1 AT-TTTT-ATA
*
45688175 ATTTTATTAAA
1 A-TTT-TTATA
*
45688186 ACTTTTAATA
1 A-TTTTTATA
45688196 ATTTTTAT-
1 ATTTTTATA
45688204 A-TTTTATA
1 ATTTTTATA
45688212 TATTTTTATA
1 -ATTTTTATA
*
45688222 ATTTTTTACA
1 A-TTTTTATA
*
45688232 ATTTTTTTTA
1 A-TTTTTATA
45688242 TATTTTTCATA
1 -ATTTTT-ATA
*
45688253 ATTTATATA
1 ATTTTTATA
*
45688262 TTTTTTATA
1 ATTTTTATA
45688271 A--TTTATA
1 ATTTTTATA
*
45688278 TTTATTTATAA
1 ATT-TTTAT-A
*
45688289 TATTTTTGTA
1 -ATTTTTATA
45688299 ATTTTTTAATA
1 A-TTTTT-ATA
**
45688310 AAATTTATA
1 ATTTTTATA
*
45688319 ATTTATATAA
1 ATTTTTAT-A
45688329 ATTTTT-TCA
1 ATTTTTAT-A
* *
45688338 ATTATAATA
1 ATTTTTATA
* *
45688347 AATTTTACA
1 ATTTTTATA
45688356 ATTTTCTAT-
1 ATTTT-TATA
45688365 A-TTTTATA
1 ATTTTTATA
45688373 ATTTTT
1 ATTTTT
45688379 GCGCTTTATA
Statistics
Matches: 197, Mismatches: 39, Indels: 49
0.69 0.14 0.17
Matches are distributed among these distances:
7 15 0.08
8 7 0.04
9 78 0.40
10 71 0.36
11 21 0.11
12 5 0.03
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:45688567 original size:38 final size:38
Alignment explanation
Indices: 45688516--45688590 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
45688506 TGACTATTAG
45688516 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
1 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
45688554 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTA
1 CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTA
45688591 TCATTCGAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.37
Consensus pattern (38 bp):
CTTTAATGGTAAAAGGGCTTAATTGATTGAAATGTTAA
Found at i:45698670 original size:23 final size:24
Alignment explanation
Indices: 45698612--45698671 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
45698602 AAGAAGTCAC
45698612 TACAATATACTTTTTTAAACATTG
1 TACAATATACTTTTTTAAACATTG
* *
45698636 TATAAATATACTTTTTCT-AATATTG
1 TA-CAATATACTTTTT-TAAACATTG
45698661 TACAAT-TACTT
1 TACAATATACTT
45698672 GATTATGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 5 0.16
24 5 0.16
25 20 0.65
26 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.03, T:0.48
Consensus pattern (24 bp):
TACAATATACTTTTTTAAACATTG
Found at i:45703883 original size:29 final size:29
Alignment explanation
Indices: 45703828--45703884 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
45703818 TGGGCATTTC
* *
45703828 CACACGGGCCGGCCACACGCCCGTGTGCG
1 CACACAGGCCGGCCACACGCCCATGTGCG
* * *
45703857 CACACAGGCTGGCCACATGCCTATGTGC
1 CACACAGGCCGGCCACACGCCCATGTGC
45703885 CAGCCCGTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.40, G:0.30, T:0.12
Consensus pattern (29 bp):
CACACAGGCCGGCCACACGCCCATGTGCG
Found at i:45706095 original size:47 final size:47
Alignment explanation
Indices: 45705949--45706124 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
45705939 GCAGATTATC
* * ** *
45705949 TGCTCGACCAGTGGTTTATCCACAATGTATTTTAGGCGGCAGTCACC
1 TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
** * * * * *
45705996 TGCTTAACCAGTAGTTTATCCACAATGTATCTTAGTTAACAGTTA-T
1 TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
*
45706042 CTGCTCGACCAATGGTTTATCCATAATGTATTTTAGTCAACAGTCACT
1 -TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
* **
45706090 TGCTCGACTAAT-GTTATATCCACAACATATTTTAG
1 TGCTCGACCAATGGTT-TATCCACAATGTATTTTAG
45706125 CAGCTTTTAT
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 3 0.03
47 100 0.96
48 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (47 bp):
TGCTCGACCAATGGTTTATCCACAATGTATTTTAGTCAACAGTCACT
Found at i:45706110 original size:94 final size:94
Alignment explanation
Indices: 45705944--45706114 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
45705934 ATTTGGCAGA
* ** * *
45705944 TTATCTGCTCGACCAGTGGTTTATCCACAATGTATTTTAGGCGGCAGTCACCTGCTTAACCAGTA
1 TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
45706009 GTTTATCCACAATGTATCTTAGTTAACAG
66 GTTTATCCACAATGTATCTTAGTTAACAG
* * * * *
45706038 TTATCTGCTCGACCAATGGTTTATCCATAATGTATTTTAGTCAACAGTCACTTGCTCGACTAAT-
1 TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
45706102 GTTATATCCACAA
66 GTT-TATCCACAA
45706115 CATATTTTAG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 3 0.05
94 63 0.95
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (94 bp):
TTATCTGCTCGACCAATGGTTTATCCACAATGTATTTTAGGCAACAGTCACCTGCTCAACCAATA
GTTTATCCACAATGTATCTTAGTTAACAG
Found at i:45707495 original size:21 final size:21
Alignment explanation
Indices: 45707458--45707500 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
45707448 CGTCTATCTT
45707458 TTTTATTTTCTTCTTTA-TTA
1 TTTTATTTTCTTCTTTACTTA
45707478 TTTTATTGTTCTAT-TTTACTTA
1 TTTTATT-TTCT-TCTTTACTTA
45707500 T
1 T
45707501 CTTAGTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTATTTTCTTCTTTACTTA
Found at i:45707538 original size:12 final size:13
Alignment explanation
Indices: 45707515--45707539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45707505 GTTTATTTAT
45707515 TTCAATTTTTTTG
1 TTCAATTTTTTTG
45707528 TTCAATTTTTTT
1 TTCAATTTTTTT
45707540 ATCTGACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTCAATTTTTTTG
Found at i:45710205 original size:28 final size:25
Alignment explanation
Indices: 45710159--45710212 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 25
45710149 TTGATTATTA
45710159 TTCAACTTTTTTTTAAGTTTTCCTTT
1 TTCAACTTTTTTTTAAGTTTT-CTTT
*
45710185 TTCAACTATTTTTCTTGAGTTTTCTTT
1 TTCAACT-TTTTT-TTAAGTTTTCTTT
45710212 T
1 T
45710213 AGAATAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 10 0.40
28 8 0.32
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.65
Consensus pattern (25 bp):
TTCAACTTTTTTTTAAGTTTTCTTT
Found at i:45710765 original size:16 final size:18
Alignment explanation
Indices: 45710739--45710775 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
45710729 TGTTTTCTAT
45710739 ATATATTTTTAATTTT-A
1 ATATATTTTTAATTTTGA
45710756 ATAT-TTTTTAATTTTGA
1 ATATATTTTTAATTTTGA
45710773 ATA
1 ATA
45710776 AACATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATATATTTTTAATTTTGA
Found at i:45711087 original size:23 final size:22
Alignment explanation
Indices: 45711057--45711104 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
45711047 TATTATCAAT
45711057 TATTTTTTTAAATCTATAAAAAA
1 TATTTTTTTAAATC-ATAAAAAA
* *
45711080 TA-TTTTTTAATTCCTAAAAAA
1 TATTTTTTTAAATCATAAAAAA
45711101 TATT
1 TATT
45711105 AAAGGTACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 11 0.50
23 2 0.09
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTTTTTTAAATCATAAAAAA
Found at i:45711088 original size:22 final size:21
Alignment explanation
Indices: 45711060--45711104 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
45711050 TATCAATTAT
45711060 TTTTTTAAATCTATAAAAAATA
1 TTTTTTAAATC-ATAAAAAATA
* *
45711082 TTTTTTAATTCCTAAAAAATA
1 TTTTTTAAATCATAAAAAATA
45711103 TT
1 TT
45711105 AAAGGTACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTTTAAATCATAAAAAATA
Found at i:45717446 original size:14 final size:13
Alignment explanation
Indices: 45717427--45717453 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45717417 CGTAGCTTCG
45717427 AAAAAAAAATTGC
1 AAAAAAAAATTGC
45717440 AAAAAAAAATTGC
1 AAAAAAAAATTGC
45717453 A
1 A
45717454 TACGGTCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAAATTGC
Done.