Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 141 of 222
Found at i:45719749 original size:22 final size:23
Alignment explanation
Indices: 45719707--45719761 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
45719697 GAGTGATAAA
*
45719707 AAAAGAGAGAGTGATTCAAAA-G
1 AAAAGAAAGAGTGATTCAAAATG
*
45719729 AAAAGAAACGAGTGA-TGAAAATG
1 AAAAGAAA-GAGTGATTCAAAATG
*
45719752 AAAAAAAAGA
1 AAAAGAAAGA
45719762 ATTTGTTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.62, C:0.04, G:0.24, T:0.11
Consensus pattern (23 bp):
AAAAGAAAGAGTGATTCAAAATG
Found at i:45723156 original size:30 final size:30
Alignment explanation
Indices: 45723115--45723174 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
45723105 CCAAATGATA
45723115 CATGCATGGACTATATTAAAGATGGTGTGC
1 CATGCATGGACTATATTAAAGATGGTGTGC
*
45723145 CATGTATGGACTATATTAAAGATGGTGTGC
1 CATGCATGGACTATATTAAAGATGGTGTGC
45723175 TGATTGTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.32
Consensus pattern (30 bp):
CATGCATGGACTATATTAAAGATGGTGTGC
Found at i:45727648 original size:40 final size:40
Alignment explanation
Indices: 45727601--45728185 Score: 994
Period size: 40 Copynumber: 14.6 Consensus size: 40
45727591 CAAGCTCAAT
* * * *
45727601 TGCCTTCGGGTCTTAACCCGGGA-ATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCC-GGATATATCAATTCGCACAAA
*
45727641 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
45727681 TGCCTTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
45727721 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
45727761 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45727801 TGCCTTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45727841 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45727881 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45727921 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
45727961 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45728001 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
45728041 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45728081 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
45728121 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
45728161 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
45728186 CATTCAAATG
Statistics
Matches: 522, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
39 5 0.01
40 516 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:45736571 original size:53 final size:53
Alignment explanation
Indices: 45736490--45736597 Score: 155
Period size: 53 Copynumber: 2.0 Consensus size: 53
45736480 AGTAGCACAT
* *
45736490 ATCACACCGATGCCATATCCCAAATATGGTCTTATACGAAAA-CTCATAATCAC
1 ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACAT-ATCAC
** *
45736543 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATATCAC
1 ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACATATCAC
45736596 AT
1 AT
45736598 GTTGCCATGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
53 45 0.92
54 4 0.08
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (53 bp):
ATCACACCGATGCCATAGCCCAAATATGGTCTTATACGAAAATCACATATCAC
Found at i:45743620 original size:130 final size:130
Alignment explanation
Indices: 45743445--45744339 Score: 1337
Period size: 130 Copynumber: 6.9 Consensus size: 130
45743435 GTTTCTTCTG
* * *
45743445 TCTGCTCCACTACAACTTCAGAGAGATAAGACCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
*
45743510 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * *
45743575 TCTGCTCTACTACAACTTCAGAGAGATAAGGTATGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * *
45743640 GGGAGATAGAATTGGCTTCTTCTGTCTGCTCCACT--ACCTTCAGGGAGATAAGATTGGATGCGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* *
45743703 TCTGCTCTACTGCAACTTTAGAGAGATAATATCTGTGGTTTTAAATCCGCTCCACTGCAACTTC-
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* *
45743767 AGGAAGATAGGATTGGATTCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG
66 AGG-AGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG
45743832 A
130 A
* * * *
45743833 TCTACTCTACTGCAACTTCAGAGAGATAAGATATGTGGTTTTAAATTCGCTCCACTACAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * *
45743898 AGGAGATAGGATTGGCTTCTTCTGTCTACTCCATTGCAACTTCAGGGAGATAAGACTGGATTCGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * *
45743963 TCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAAATCTGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * * *
45744028 GGGAGATAGGATTGACTTCTTCTGTCTGCTCCACTGCAACGTCAGGGAGATAAGACTAGATGTGA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
* * * * *
45744093 TATGCTTTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAAATCCGATCCACTGCAACTTTA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * * * *
45744158 GGGAGATAGGATTGGCTTCTTCTTTCTGCTCTACTGCAACTTCAGGGAGATAAGACTAGATGCAA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
** * *
45744223 TCTGCTCTACTAAAATTTCAGAAAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
* * *
45744288 AGGAGATAGGATTGGCTTCTTTTGTCTGTTCCACTGCAACTTTAGGGAGATA
66 AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATA
45744340 GGATTATTGT
Statistics
Matches: 687, Mismatches: 74, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
127 2 0.00
128 113 0.16
130 569 0.83
131 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (130 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAATCCGCTCCACTGCAACTTCA
AGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGA
Found at i:45753396 original size:25 final size:25
Alignment explanation
Indices: 45753368--45753429 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
45753358 TTACAGTTCT
45753368 TATGAGCTTCCCGATATACAACTCA
1 TATGAGCTTCCCGATATACAACTCA
* *
45753393 TATGAGCTTCCCGTTATACAGCTCA
1 TATGAGCTTCCCGATATACAACTCA
* *
45753418 GAAGAGCTTCCC
1 TATGAGCTTCCC
45753430 ATTTACATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (25 bp):
TATGAGCTTCCCGATATACAACTCA
Found at i:45760872 original size:50 final size:50
Alignment explanation
Indices: 45760790--45760900 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
45760780 ACAACTCTCT
** * * * * * *
45760790 TGAGCTTCCCGATATTTGGCTCGCATAAGCTTCTCAATTTACAGTTCTTA
1 TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
* * *
45760840 TGAGCTTCCTGATAAATGGCCCACATGAGCTTCCCGATCTACAGCTCGTA
1 TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
45760890 TGAGCTTCCCG
1 TGAGCTTCCCG
45760901 TTTACATGCT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (50 bp):
TGAGCTTCCCGATAAATGGCCCACATAAGCTTCCCAATCTACAGCTCGTA
Found at i:45760892 original size:25 final size:25
Alignment explanation
Indices: 45760864--45760919 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 25
45760854 AATGGCCCAC
45760864 ATGAGCTTCCCGATCTACA-GCTCGT
1 ATGAGCTTCCCG-TCTACATGCTCGT
*
45760889 ATGAGCTTCCCGTTTACATGCTCGT
1 ATGAGCTTCCCGTCTACATGCTCGT
45760914 ATGAGC
1 ATGAGC
45760920 ATACATGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (25 bp):
ATGAGCTTCCCGTCTACATGCTCGT
Found at i:45770436 original size:23 final size:24
Alignment explanation
Indices: 45770390--45770466 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 24
45770380 AGATATATAA
* **
45770390 AATAATACATAATAAA-TTTGAAT
1 AATAATACATGATAAACTTAAAAT
45770413 AATAATACATGA-AAACTTAAAAT
1 AATAATACATGATAAACTTAAAAT
* * **
45770436 AATTATATATGATAATTTTAAAAT
1 AATAATACATGATAAACTTAAAAT
45770460 AATAATA
1 AATAATA
45770467 TGCAATAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.07
23 26 0.59
24 15 0.34
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (24 bp):
AATAATACATGATAAACTTAAAAT
Found at i:45770474 original size:24 final size:24
Alignment explanation
Indices: 45770401--45770481 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
45770391 ATAATACATA
* * *
45770401 ATAAATTT-GAATAATAATACATG
1 ATAAATTTAAAATAATTATATATG
*
45770424 A-AAACTTAAAATAATTATATATG
1 ATAAATTTAAAATAATTATATATG
*
45770447 ATAATTTTAAAATAA-TA-ATATG
1 ATAAATTTAAAATAATTATATATG
45770469 CAATAAATTTAAA
1 --ATAAATTTAAA
45770482 CAATATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
22 10 0.21
23 16 0.34
24 21 0.45
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.36
Consensus pattern (24 bp):
ATAAATTTAAAATAATTATATATG
Found at i:45772330 original size:39 final size:40
Alignment explanation
Indices: 45772230--45772414 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
45772220 TTGAATGATG
* * *
45772230 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
45772269 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
45772310 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
45772349 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
45772388 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
45772415 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:45772366 original size:79 final size:81
Alignment explanation
Indices: 45772230--45772414 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
45772220 TTGAATGATG
*
45772230 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
45772294 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ***
45772309 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGAT-CCGAAGGCA
*
45772371 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
45772389 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45772415 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:45772436 original size:79 final size:79
Alignment explanation
Indices: 45772283--45772437 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
45772273 GAACTAAGAT
* **
45772283 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
45772348 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
45772362 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
45772425 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
45772438 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:45780264 original size:40 final size:40
Alignment explanation
Indices: 45780126--45780257 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
45780116 GGACTAAGAT
* * *
45780126 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
*
45780165 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
*
45780205 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
45780245 CCGAAGGCATTTG
1 CCGAAGGCATTTG
45780258 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 36 0.41
40 49 0.56
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:45780279 original size:79 final size:79
Alignment explanation
Indices: 45780126--45780290 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
45780116 GGACTAAGAT
* **
45780126 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
*
45780191 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
45780205 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGTTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGATA-C
* *
45780268 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
45780284 CCGAAGG
1 CCGAAGG
45780291 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
ATCCGGGTTAAATC
Found at i:45782934 original size:44 final size:43
Alignment explanation
Indices: 45782881--45783937 Score: 490
Period size: 44 Copynumber: 23.8 Consensus size: 43
45782871 TCATCGTTTT
* *
45782881 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGCAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * *
45782925 AATCTGCTCCACTACAACTTCAAGGAGATAAGGTTTG-A--TAT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGCAGCT-TC
* * * *
45782966 GATC-GTCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTC
1 AATCTG-CTCCACTGCAACTTCAGGGAGATAAGAT-TGC-------AGCTTC
* * * ** *
45783017 AACCTGTTCCACCGCAGTTTCAGGGAAATAAGATT-CA-CTATC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCAGCT-TC
45783059 ATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-C-GCTTC
1 A--A-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * * *** *
45783104 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * * * * * * *
45783148 AATCTACTCTACTACAAATTTAGGGAGATCAGATTTTCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TTGCAGCTTC
* * * * * **
45783193 AGTCTGCCCCAAT-CTAACTTTAGGGGGATAAGACTTGCTCTCTTC
1 AATCTGCTCCACTGC-AACTTCAGGGAGATAAGA-TTGC-AGCTTC
* * *
45783238 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAG-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-CAGCTTC
* *** *
45783282 AATCTGCTCCACTGCAACTTCTA-GGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGATT-GCAGCTTC
* * * *
45783326 AATCTGCTACACTACAACTTCAGGGTGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-CAGCTTC
* * * * * *
45783371 AGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
** * * *
45783415 AATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * *** *
45783459 AATCCT-CTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTT
1 AAT-CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
* * * * * *
45783503 AACCTACTCCATTGCAACTTTAAGGAGATAAGATTCGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-G-CAGCTTC
* * * * * **
45783548 AGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTGCTTTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGC-AGCTTC
* * * * * * *
45783593 AGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * *
45783637 AATATGCTCCACTGCAACTTCAGGGAGATAGAATTATTG--GCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGAT--AA-GATTGCAGCTTC
* * *** *
45783681 AATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
** *
45783725 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAATCACCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-AT-TGCAGCTTC
* * * * **
45783770 AGTCTGCCCCACCGCAACTTCAAAGG-GATAAGACTTGCTTTCTTC
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAGA-TTGC-AGCTTC
* * ** * * *
45783815 AGTCTGCTCCATTGCAACTTCAGTAAGATAAGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCAGCTTC
* * * *** *
45783859 AATCCGCTCCACTGCAACTTCAAGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCAGCTTC
*
45783903 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
45783938 CATCATCTTC
Statistics
Matches: 779, Mismatches: 178, Indels: 112
0.73 0.17 0.10
Matches are distributed among these distances:
40 3 0.00
41 33 0.04
42 34 0.04
43 13 0.02
44 388 0.50
45 260 0.33
46 18 0.02
47 1 0.00
49 2 0.00
50 2 0.00
51 24 0.03
52 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCAGCTTC
Found at i:45783369 original size:178 final size:178
Alignment explanation
Indices: 45783054--45783837 Score: 883
Period size: 178 Copynumber: 4.4 Consensus size: 178
45783044 ATAAGATTCA
* *
45783054 CTATCATT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCG---CTTCAATCCGCTCCA
1 CTATC-TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATCTGCTCCA
* * * * *
45783115 CTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTACAAATTTAGGGAGATCAG
64 CTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAG
* * *
45783180 ATTTTCCATCTTCAGTCTGCCCCAATCTAACTTTAGGGGGATAAGACTTG
129 ATTTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
* * *
45783230 CTCTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAGTTTAATCTGCTCCACT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
* * *
45783295 GCAACTTCTA-GGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGA
66 GCAACTTC-AGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA
45783359 TTTGCCATCTTCAGTCTGCCCCACTGC-AACTTCAGGGGGATAAGACTTG
130 TTTGCCATCTTCAGTCTGCCCCACT-CTAACTTCAGGGGGATAAGACTTG
* * * **
45783408 -TAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGTAACTTTAATCCT-CTCCAC
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT-CTGCTCCAC
* * * * * *
45783471 TGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGCAACTTTAAGGAGATAAGA
65 TGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA
* * *
45783536 TTCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTG
130 TTTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
* * * * *
45783585 CTTTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCACT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
* * ** *
45783650 GCAACTTCAGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGAT
66 GCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGA-
* * * * * **
45783715 TATTGGC-T-TT-AATCTGCTCCACTGC-AACTTCAGGGAGATAAGAATCA
130 T-TTGCCATCTTCAGTCTGCCCCACT-CTAACTTCAGGGGGATAAGACTTG
* * * * ** * *
45783762 CCATCTTCAGTCTGCCCCACCGCAACTTCAAAGG-GATAAGACTTGCTTTCTTCAGTCTGCTCCA
1 CTATCTTCAGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTG-TAACTTTAATCTGCTCCA
*
45783826 TTGCAACTTCAG
64 CTGCAACTTCAG
45783838 TAAGATAAGA
Statistics
Matches: 514, Mismatches: 78, Indels: 30
0.83 0.13 0.05
Matches are distributed among these distances:
175 3 0.01
176 41 0.08
177 213 0.41
178 250 0.49
179 4 0.01
180 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (178 bp):
CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACT
GCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAGAT
TTGCCATCTTCAGTCTGCCCCACTCTAACTTCAGGGGGATAAGACTTG
Found at i:45783450 original size:222 final size:221
Alignment explanation
Indices: 45783240--45783937 Score: 815
Period size: 222 Copynumber: 3.1 Consensus size: 221
45783230 CTCTCTTCAG
* *
45783240 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAG-TTTAATCTGCTCCACTGCAACTTCT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCT
* * * ** * * **
45783304 AGGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGATTTGCCATCT
65 AGGAGATAGGATTATCGCCTTTAGTCTGCCCCACTGCAACTTCAGGG-GATAAGACTTGCTTTCT
* *
45783369 TCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACT
129 TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACT
* * **
45783434 TCAAAGAGATAAGACTT-GTAACTTTAA
194 TCAAGGAGATAAGACTTATTGGCTTTAA
* * * * *
45783461 TCCT-CTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGCAACTT-T
1 T-CTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCT
* * *
45783524 AAGGAGATAAGA-T-TCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACTTGCT
65 -AGGAGATAGGATTATCGCC-T-TT-AGTCTGCCCCACTGCAACTTCA-GGGGATAAGACTTGCT
* * * *
45783587 TTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCACTGC
125 TTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGC
* *
45783652 AACTTCAGGGAGAT-AGAATTATTGGCTTTAA
190 AACTTCAAGGAGATAAGACTTATTGGCTTTAA
* *
45783683 TCTGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTC-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCTA
* * * *
45783747 GGGAGATAAGA--ATCACCATCTTCAGTCTGCCCCACCGCAACTTCAAAGGGATAAGACTTGCTT
66 -GGAGATAGGATTATCGCC-T-TT-AGTCTGCCCCACTGCAACTTC-AGGGGATAAGACTTGCTT
* ** *
45783810 TCTTCAGTCTGCTCCATTGCAACTTCAGTAAGATAAGACTTGTAACTTTAATCCGCTCCACTGCA
126 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCA
*
45783875 ACTTCAAGGAGATAGGA-TTATTGGCTTTAA
191 ACTTCAAGGAGATAAGACTTATTGGCTTTAA
*
45783905 TCTGCTCCACTGCAACTTTAGGGAGATAAGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
45783938 CATCATCTTC
Statistics
Matches: 409, Mismatches: 54, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
219 3 0.01
220 8 0.02
221 66 0.16
222 326 0.80
223 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (221 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCTA
GGAGATAGGATTATCGCCTTTAGTCTGCCCCACTGCAACTTCAGGGGATAAGACTTGCTTTCTTC
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCTGCTCCACTGCAACTTC
AAGGAGATAAGACTTATTGGCTTTAA
Found at i:45783789 original size:355 final size:352
Alignment explanation
Indices: 45783035--45783809 Score: 1002
Period size: 355 Copynumber: 2.2 Consensus size: 352
45783025 CCACCGCAGT
* * **
45783035 TTCAGGGAAATAAGATTCACTATCATTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTCG
1 TTCAGGGAGATAAGAATCACTATC-TTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTT-G
* *
45783100 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTACAA
64 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTACAA
* * ** * *
45783165 ATTTAGGGAGATCAGATTTTCCATCTTCAGTCTGCCCCAATCTAACTTTAGGGGGATAAGACTTG
129 ATTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACTTG
* * * *
45783230 CTCTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAGTTTAATCTGCTCCACT
194 CTCTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCACT
* *
45783295 GCAACTTCTAGGAGATAGGATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGTGATAAGAT
259 GCAACTTCTAGGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAAGAT
*
45783360 TTGCCATCTTCAGTCTGCCCCACTGCAAC
324 TTGCCATCTTCAATCTGCCCCACTGCAAC
* * ** * *
45783389 TTCAGGGGGATAAGACT-TGTAACTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGT
1 TTCAGGGAGATAAGAATCACTATC-TTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTG-
* * * * * *
45783453 AACTTTAATCCTCTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAACCTACTCCATTGC
64 --CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTAC
* * *
45783518 AACTTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCACTGTAACTTCAGGGGGATAAGACT
127 AAATTTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACT
* * *
45783583 TGCTTTCTTCAGTCTGTTACACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATATGCTCCA
192 TGCTCTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCA
* ** *
45783648 CTGCAACTTC-AGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAG
257 CTGCAACTTCTA-GGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAA
* *
45783712 GATTATTGGC-T-TT-AATCTGCTCCACTGCAAC
321 GA-T-TTGCCATCTTCAATCTGCCCCACTGCAAC
* * * *
45783743 TTCAGGGAGATAAGAATCACCATCTTCAGTCTGCCCCACCGCAACTTCAAAGGGATAAGACTTGC
1 TTCAGGGAGATAAGAATCACTATCTT-AGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGC
45783808 TT
65 TT
45783810 TCTTCAGTCT
Statistics
Matches: 360, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
352 4 0.01
353 38 0.11
354 48 0.13
355 264 0.73
356 2 0.01
357 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (352 bp):
TTCAGGGAGATAAGAATCACTATCTTAGTCTGCTCCACTGCAACTTCAAAGAGATAAGACTTGCT
TCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAACCTACTCCACTACAAAT
TTAAGGAGATAAGATTCGCCATCTTCAGTCTACCCCAATCTAACTTCAGGGGGATAAGACTTGCT
CTCTTCAGTCTGCTACACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATATGCTCCACTGC
AACTTCTAGGAGATAGAATTATTGGCTTTAATCTGCTACACTACAACTTCAGGGAGATAAGATTT
GCCATCTTCAATCTGCCCCACTGCAAC
Found at i:45784231 original size:24 final size:24
Alignment explanation
Indices: 45784195--45784241 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
45784185 GCCCCTACTA
*
45784195 TAATGTTCAAGGTTCAATCCACTG
1 TAATCTTCAAGGTTCAATCCACTG
*
45784219 TAATCTTCCAGGTTCAATCCACT
1 TAATCTTCAAGGTTCAATCCACT
45784242 ATACTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (24 bp):
TAATCTTCAAGGTTCAATCCACTG
Found at i:45790755 original size:24 final size:25
Alignment explanation
Indices: 45790728--45790778 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
45790718 ATCATATATG
* *
45790728 TATATACGTATAATATA-AATTGTA
1 TATATACATATAAAATATAATTGTA
*
45790752 TATATACATATAAAATATTATTGTA
1 TATATACATATAAAATATAATTGTA
45790777 TA
1 TA
45790779 GGAAAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (25 bp):
TATATACATATAAAATATAATTGTA
Found at i:45790956 original size:20 final size:21
Alignment explanation
Indices: 45790905--45790956 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
45790895 TAAAGATATA
*
45790905 TAAAATAATACATAATAAATT
1 TAAAATAATACATAATAAACT
*
45790926 TGAATAATAATACATGA-AAACT
1 T-AA-AATAATACATAATAAACT
45790948 TAAAATAAT
1 TAAAATAAT
45790957 TATATATGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 6 0.22
21 3 0.11
22 7 0.26
23 11 0.41
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.31
Consensus pattern (21 bp):
TAAAATAATACATAATAAACT
Found at i:45790979 original size:24 final size:23
Alignment explanation
Indices: 45790905--45790999 Score: 81
Period size: 24 Copynumber: 4.2 Consensus size: 23
45790895 TAAAGATATA
45790905 TAAAATAATACATA-AT--AAATT
1 TAAAATAATA-ATATATGAAAATT
* * *
45790926 T-GAATAATAATACATGAAAACT
1 TAAAATAATAATATATGAAAATT
*
45790948 TAAAATAATTATATATGACAAATT
1 TAAAATAATAATATATGA-AAATT
**
45790972 TAAAATAATAATATGCGATAAATT
1 TAAAATAATAATATATGA-AAATT
45790996 TAAA
1 TAAA
45791000 CAATATTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.05
20 9 0.15
21 1 0.02
22 5 0.08
23 13 0.22
24 28 0.47
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
TAAAATAATAATATATGAAAATT
Found at i:45800904 original size:5 final size:5
Alignment explanation
Indices: 45800894--45800934 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
45800884 GCTTACATTA
45800894 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
45800935 GCTTATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:45801091 original size:15 final size:15
Alignment explanation
Indices: 45801071--45801104 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
45801061 TTATCGTTGA
45801071 TTATTATTATTGTT-T
1 TTATTA-TATTGTTAT
45801086 TTATTATATTGTTAT
1 TTATTATATTGTTAT
45801101 TTAT
1 TTAT
45801105 ATCATTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTATTATATTGTTAT
Found at i:45801457 original size:107 final size:108
Alignment explanation
Indices: 45801327--45801591 Score: 453
Period size: 107 Copynumber: 2.5 Consensus size: 108
45801317 TATCCAAATA
* *
45801327 AAAATTTCAAAATAAGGTAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTAG
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCT-G
*
45801392 G-TTTCGATTTTTCGTTCGACCAAATAGCT-AAAATATCCTTTT
65 GTTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
45801434 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
45801499 TTTTCGATTTTTCGTTCGACTAAATAGCTAAAAATATCATTTT
66 TTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
* *
45801542 AAAATTTCAAAATAAGGCAATATTTCACGTTTAGAAGTTCGAGAAAACGT
1 AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGT
45801592 ACCAGCTACA
Statistics
Matches: 150, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
106 2 0.01
107 88 0.59
108 60 0.40
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (108 bp):
AAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
TTTTCGATTTTTCGTTCGACCAAATAGCTAAAAATATCATTTT
Found at i:45803121 original size:13 final size:13
Alignment explanation
Indices: 45803103--45803140 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
45803093 AGGATATCTG
*
45803103 TCAATATTAGGCC
1 TCAATATCAGGCC
45803116 TCAATATCAGGCC
1 TCAATATCAGGCC
45803129 TCAATATCAGGC
1 TCAATATCAGGC
45803141 TGGTGCCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (13 bp):
TCAATATCAGGCC
Found at i:45811170 original size:128 final size:128
Alignment explanation
Indices: 45810851--45811439 Score: 448
Period size: 128 Copynumber: 4.5 Consensus size: 128
45810841 GTCCTATTTT
* * * * * * ** * * *
45810851 CCTGAGCAACAGCGGAATAGGTCGAAGATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAG
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAG
* * *
45810916 ATCG-CATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCC-TATCTC
65 ATCGACATCAAATCTTATCTCCC-AAGCAATAGTGGAGCAGACGAAAGAAACCAAGCCTTGTCTC
** * * * ** * * * * *
45810979 CCTGAAGTTGCAGTGGTG-CGGATT-AAAACCACAGATCTTATCTCTCTGAAGTTA-CAGTAGAG
1 CCTG-AGCAGCAGTGGAGTAGG-TTGAAGATTATAGATCTTATCTCCCT-AAG-CAGTAGTGGAG
*
45811041 CAGATCG-CATCAAGTCTTATCTCCCTAAGCAATAGTGGAGCAGACGAAAGAAACCAAGCCTTGT
62 CAGATCGACATCAAATCTTATCTCCC-AAGCAATAGTGGAGCAGACGAAAGAAACCAAGCCTTGT
45811105 CTC
126 CTC
*
45811108 CCTGAGCAGCTGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * *** **
45811173 CCGAAGACGGCAAATCTTATCTTTCCAAG--ATAGTGGGGAGCAGATTTAAGCCACCAA-CCTTG
66 TC---GACATCAAATCTTATC-TCCCAAGCAATAGT--GGAGCAGACGAAAGAAACCAAGCCTTG
45811235 TCTC
125 TCTC
*
45811239 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * * *** **
45811304 TCGAAGACGA-CAAATCTTATCCTTCCAAGGTAGTAG-GGAAGCAGATTTAAGCCACC-AGCCTT
66 TC---GAC-ATCAAATCTTAT-CTCCCAA-GCAATAGTGG-AGCAGACGAAAGAAACCAAGCCTT
45811366 GTCTC
124 GTCTC
* * * *
45811371 TCTGAGCAGCAGTGGAGTAGG-TGAAAGATTGTAGATCTTATCTTCCTAAGCAATAGTGGAGCAG
1 CCTGAGCAGCAGTGGAGTAGGTTG-AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
45811435 ATCGA
65 ATCGA
45811440 AGACGACGAA
Statistics
Matches: 391, Mismatches: 48, Indels: 43
0.81 0.10 0.09
Matches are distributed among these distances:
127 1 0.00
128 119 0.30
129 40 0.10
130 5 0.01
131 101 0.26
132 119 0.30
133 3 0.01
134 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (128 bp):
CCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
TCGACATCAAATCTTATCTCCCAAGCAATAGTGGAGCAGACGAAAGAAACCAAGCCTTGTCTC
Found at i:45811190 original size:44 final size:44
Alignment explanation
Indices: 45810923--45811519 Score: 164
Period size: 44 Copynumber: 13.7 Consensus size: 44
45810913 CAGATCGCAT
*
45810923 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGA-AA
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACGA
* * ** * * * * * *
45810966 CCAATCCTATCTCCCTGAAGTTGCAGTGGTGCGGAT-TAAAACCA
1 CAAATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGACGA
* * * * *
45811010 CAGATCTTATCTCTCTGAAGTTA-CAGTAGAGCAGATC---G-C-A
1 CAAATCTTATCTCCCT-AAG-CAGTAGTGGAGCAGATCGAAGACGA
* * *
45811050 TCAAGTCTTATCTCCCTAAGCAATAGTGGAGCAGA-CGAAAGA-AA
1 -CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGACGA
** * * * * * **
45811094 CCAAGCCTTGTCTCCCTGAGCAGCT-GTGGAGTAGGTTGAAGATTA
1 -CAAATCTTATCTCCCTAAGCAG-TAGTGGAGCAGATCGAAGACGA
* * * *
45811139 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACCGAAGACGG
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* ** *
45811183 CAAATCTTATCTTTCC-AAG-A-TAGTGGGGAGCAGATTTAAG-CCA
1 CAAATCTTATC-TCCCTAAGCAGTAGT--GGAGCAGATCGAAGACGA
* * * * * * * * *
45811226 CCAACCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTG-
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CGA
* *
45811270 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* * ** *
45811314 CAAATCTTATCCTTCC-AAGGTAGTAG-GGAAGCAGATTTAAG-CCA
1 CAAATCTTAT-CTCCCTAA-GCAGTAGTGG-AGCAGATCGAAGACGA
* ** * * * * * * *
45811358 CCAGCCTTGTCTCTCTGAGCAGCAGTGGAGTAGGT-GAAAGATTG-
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AAGA-CGA
* * * *
45811402 TAGATCTTATCTTCCTAAGCAATAGTGGAGCAGATCGAAGACGA
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
* * **
45811446 CGAATCTTATCTTCCC-AATGTAGTAG-GGAAGCAGATTTAAGAC-A
1 CAAATCTTATC-TCCCTAA-GCAGTAGTGG-AGCAGATCGAAGACGA
*** * *
45811490 CTGGTCCTATCTCCCTGAGCAGTAGTGGAG
1 CAAATCTTATCTCCCTAAGCAGTAGTGGAG
45811520 TAGGTTGAAG
Statistics
Matches: 387, Mismatches: 126, Indels: 82
0.65 0.21 0.14
Matches are distributed among these distances:
39 2 0.01
40 14 0.04
41 14 0.04
42 7 0.02
43 72 0.19
44 227 0.59
45 51 0.13
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA
Found at i:45811229 original size:132 final size:132
Alignment explanation
Indices: 45811093--45811541 Score: 658
Period size: 132 Copynumber: 3.4 Consensus size: 132
45811083 GACGAAAGAA
* *
45811093 ACCAAGCCTTGTCTCCCTGAGCAGCTGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * *
45811158 CAGTAGTGGAGCAGACCGAAGACGGCAAATCTTATCTTTCCAAGATAGT-GGGGAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAG-TAGTAGGGAAGCAGATTTAA
45811222 GCC
130 GCC
45811225 ACCAA-CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
45811289 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCCTTCCAAGGTAGTAGGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA-GTAGTAGGGAAGCAGATTTAA
45811354 GCC
130 GCC
* *
45811357 ACC-AGCCTTGTCTCTCTGAGCAGCAGTGGAGTAGG-TGAAAGATTGTAGATCTTATCTTCCTAA
1 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTG-AAGATTGTAGATCTTATCTCCCTAA
* * *
45811420 GCAATAGTGGAGCAGATCGAAGACGACGAATCTTATCTTCCCAATGTAGTAGGGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA-GTAGTAGGGAAGCAGATTTA
*
45811485 AGAC
129 AGCC
** * * *
45811489 A-CTGGTCC-TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGAATGTAGATCTT
1 ACCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTT
45811542 GTCTTCCTGT
Statistics
Matches: 291, Mismatches: 19, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
131 105 0.36
132 182 0.63
133 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (132 bp):
ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGTAGTAGGGAAGCAGATTTAAG
CC
Found at i:45813914 original size:15 final size:15
Alignment explanation
Indices: 45813894--45813927 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
45813884 TTATCGTTGA
45813894 TTATTATTATTGTT-T
1 TTATTA-TATTGTTAT
45813909 TTATTATATTGTTAT
1 TTATTATATTGTTAT
45813924 TTAT
1 TTAT
45813928 ATCATTAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTATTATATTGTTAT
Found at i:45814275 original size:107 final size:107
Alignment explanation
Indices: 45814148--45814589 Score: 647
Period size: 107 Copynumber: 4.1 Consensus size: 107
45814138 TATCCAAATA
* * * *
45814148 AAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCTTATCGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
45814213 GTTTTGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
66 GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
* *
45814255 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTACCCTAACATGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
45814320 GTTTCAATTTTTTGTTCGACCAAATAGCTAAAAATATCCTTTT
66 GTTTCGATTTTTCGTTCGACCAAATAGCT-AAAATATCCTTTT
*
45814363 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
*
45814428 GTTTCGATTTTTTTTTTCGTTCGACCAAATAGCTAAAATATCCTTCT
66 GTTTCGA-----TTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
* * *
45814475 AAAATTTCAGAATAAGGCAATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* * *
45814540 GTTTCGATTTCTCGTT-GAACCAAATAGC-CAAATATCCTCTT
66 GTTTCGATTTTTCGTTCG-ACCAAATAGCTAAAATATCCTTTT
45814581 -AAATTTCAA
1 AAAATTTCAA
45814590 TCCATGTCAT
Statistics
Matches: 304, Mismatches: 24, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
105 8 0.03
106 11 0.04
107 103 0.34
108 81 0.27
112 80 0.26
113 21 0.07
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (107 bp):
AAAATTTCAAAATAAAGCAATATTTTACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTT
Found at i:45814532 original size:220 final size:213
Alignment explanation
Indices: 45814148--45814589 Score: 645
Period size: 220 Copynumber: 2.0 Consensus size: 213
45814138 TATCCAAATA
* ** * *
45814148 AAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAGTTCGAGAAAACGTGCCTTATCGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
45814213 GTTTTGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTTTAAAATTTCAAAATAAAGCAATAT
66 GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGCAATAT
* * *
45814278 TTTACGTTTGGAAGTTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTTTTGTTCG-ACCA
131 TTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTT-GAACCA
*
45814342 AATAGCTAAAAATATCCTTTT
195 AATAGC--AAAATATCCTCTT
45814363 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
1 AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
* *
45814428 GTTTCGATTTTTTTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAGAATAAGGC
66 GTTTCGA-----TTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGC
* * *
45814493 AATATTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTCGTTGA
126 AATATTTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTTGA
*
45814558 ACCAAATAGCCAAATATCCTCTT
191 ACCAAATAGCAAAATATCCTCTT
45814581 -AAATTTCAA
1 AAAATTTCAA
45814590 TCCATGTCAT
Statistics
Matches: 204, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
215 66 0.32
217 9 0.04
218 11 0.05
219 1 0.00
220 117 0.57
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (213 bp):
AAAATTTCAAAATAAAGCAATATTTCACGTTTGGAAGTTCGAGAAAACGTGCCCTAACGTGCTGG
GTTTCGATTTTTCGTTCGACCAAATAGCTAAAATATCCTTCTAAAATTTCAAAATAAAGCAATAT
TTTACGTTTGGAAATTCGAGAAAACGTACCCTAACATGCTGGGTTTCAATTTCTCGTTGAACCAA
ATAGCAAAATATCCTCTT
Found at i:45815634 original size:21 final size:21
Alignment explanation
Indices: 45815571--45815715 Score: 94
Period size: 21 Copynumber: 7.0 Consensus size: 21
45815561 GAAGCTCATG
*
45815571 AGAGCTAAACGGAAACCCA-A
1 AGAGCTGAACGGAAACCCATA
* * * * *
45815591 AGGGTTGAACGGAAGCTCGTA
1 AGAGCTGAACGGAAACCCATA
45815612 AGAGCTGAACGGAAACCCATA
1 AGAGCTGAACGGAAACCCATA
* * * * * *
45815633 AGGGTTGAACTGAAGCTCAAA
1 AGAGCTGAACGGAAACCCATA
* **
45815654 AGAGCTAAACAAAAACCCATA
1 AGAGCTGAACGGAAACCCATA
* * * * * *
45815675 AGAGTTAAACTGAAGCTCAAA
1 AGAGCTGAACGGAAACCCATA
45815696 AGAGCTGAACGGAAACCCAT
1 AGAGCTGAACGGAAACCCAT
45815716 TAGGGTTGAA
Statistics
Matches: 87, Mismatches: 37, Indels: 1
0.70 0.30 0.01
Matches are distributed among these distances:
20 13 0.15
21 74 0.85
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (21 bp):
AGAGCTGAACGGAAACCCATA
Found at i:45815649 original size:42 final size:42
Alignment explanation
Indices: 45815552--45815735 Score: 219
Period size: 42 Copynumber: 4.4 Consensus size: 42
45815542 GAAGCCCGAA
**
45815552 GGTTGAA-TAGAAGCTCATGAGAGCTAAACGGAAACCCA-AAG
1 GGTTGAACT-GAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* ** *
45815593 GGTTGAACGGAAGCTCGTAAGAGCTGAACGGAAACCCATAAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
**
45815635 GGTTGAACTGAAGCTCAAAAGAGCTAAACAAAAACCCATAAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* * * *
45815677 AGTTAAACTGAAGCTCAAAAGAGCTGAACGGAAACCCATTAG
1 GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
* *
45815719 GGTTGAACAGAAACTCA
1 GGTTGAACTGAAGCTCA
45815736 TATGAGTTAA
Statistics
Matches: 121, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
41 33 0.27
42 88 0.73
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (42 bp):
GGTTGAACTGAAGCTCAAAAGAGCTAAACGGAAACCCATAAG
Found at i:45815849 original size:24 final size:24
Alignment explanation
Indices: 45815822--45815869 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
45815812 TACTTGGGTA
*
45815822 ATTTGCCGTCAAATCATCCTTTGC
1 ATTTACCGTCAAATCATCCTTTGC
*
45815846 ATTTACCGTCAATTCATCCTTTGC
1 ATTTACCGTCAAATCATCCTTTGC
45815870 CACAGAACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (24 bp):
ATTTACCGTCAAATCATCCTTTGC
Found at i:45822523 original size:21 final size:21
Alignment explanation
Indices: 45822478--45822523 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
45822468 TCATCATATC
****
45822478 AAAACTATGGGAAATTATTGT
1 AAAACTATGGGAAATTAAAAA
45822499 AAAACTATGGGAAATTAAAAA
1 AAAACTATGGGAAATTAAAAA
45822520 AAAA
1 AAAA
45822524 ATGTAAGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.04, G:0.15, T:0.24
Consensus pattern (21 bp):
AAAACTATGGGAAATTAAAAA
Found at i:45831557 original size:15 final size:16
Alignment explanation
Indices: 45831537--45831566 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45831527 ATGTCAGAGC
45831537 AAATAAAAG-AGAAAA
1 AAATAAAAGAAGAAAA
45831552 AAATAAAAGAAGAAA
1 AAATAAAAGAAGAAA
45831567 TAAGAAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (16 bp):
AAATAAAAGAAGAAAA
Found at i:45832883 original size:3 final size:3
Alignment explanation
Indices: 45832875--45832944 Score: 65
Period size: 3 Copynumber: 24.3 Consensus size: 3
45832865 AGAATTTTTC
* * * *
45832875 TCT TCT TC- TCC TCC TCT TCT TCT TAT T-T TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
45832921 TCT TTT TCT TC- TCT GCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
45832945 TTTATTTTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 6 0.11
3 50 0.89
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:45832920 original size:17 final size:17
Alignment explanation
Indices: 45832875--45832944 Score: 72
Period size: 17 Copynumber: 4.2 Consensus size: 17
45832865 AGAATTTTTC
* *
45832875 TCTTCTTCTCCTCCTCT
1 TCTTCTTCTCTTCTTCT
* *
45832892 TCTTCTTATTTTCTTCT
1 TCTTCTTCTCTTCTTCT
45832909 TCTTCTTCT-TT-TTCT
1 TCTTCTTCTCTTCTTCT
* *
45832924 TTTTCTTCTCTGCTTCT
1 TCTTCTTCTCTTCTTCT
45832941 TCTT
1 TCTT
45832945 TTTATTTTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.28
16 3 0.07
17 28 0.65
ACGTcount: A:0.01, C:0.31, G:0.01, T:0.66
Consensus pattern (17 bp):
TCTTCTTCTCTTCTTCT
Found at i:45832952 original size:26 final size:24
Alignment explanation
Indices: 45832889--45832952 Score: 85
Period size: 26 Copynumber: 2.6 Consensus size: 24
45832879 CTTCTCCTCC
*
45832889 TCTTCTTCTTA-TTTTCTTCTTCT
1 TCTTCTTTTTATTTTTCTTCTTCT
*
45832912 TCTTCTTTTTCTTTTTCTTCTCTGCT
1 TCTTCTTTTTATTTTTCTTCT-T-CT
45832938 TCTTCTTTTTATTTT
1 TCTTCTTTTTATTTT
45832953 ACTGCCTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 9 0.26
24 9 0.26
25 1 0.03
26 16 0.46
ACGTcount: A:0.03, C:0.23, G:0.02, T:0.72
Consensus pattern (24 bp):
TCTTCTTTTTATTTTTCTTCTTCT
Found at i:45833751 original size:324 final size:324
Alignment explanation
Indices: 45833043--45834014 Score: 1817
Period size: 324 Copynumber: 3.0 Consensus size: 324
45833033 TAGAAAATGG
* *
45833043 TTAAAATGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAAAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
*
45833108 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTATTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
45833173 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTTTGAACTAATTAATAACAACA
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATA--TTTTTTTGAACTAATTAATAACAACA
45833238 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATATAGATGTGTG
194 CATGAAATATATAATATTAAAATGAAAAATATTAGAAGC-TT-TATATATATATATAGATGTGTG
45833303 CGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAA
257 CGTGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAA
45833368 GCT
322 GCT
45833371 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
*
45833436 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCACTATTTTAGTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
45833501 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTGAACTAATTAATAACAACACA
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTGAACTAATTAATAACAACACA
45833566 TGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATAGATGTGTGCGTG
196 TGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATAGATGTGTGCGTG
45833631 AAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAGCT
261 AAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAGCT
*
45833695 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACAGAATTGAAATCAGAATGACTGTTT
1 TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
45833760 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
66 TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
45833825 AAAAATCATATTAAATACTAGATGTTTAAAAAT-AT-TTTTTTTGAACTAATTAATAACAACACA
131 AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTGAACTAATTAATAACAACACA
45833888 TGAAATATATATAATATTAAAATGAAAAATATTAGAAGC-TT-TATATATATATAGATGTGTGCG
196 TG-AA-ATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATAGATGTGTGCG
45833951 TGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAG
259 TGAAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAG
45834015 TATAGTTTGG
Statistics
Matches: 636, Mismatches: 6, Indels: 10
0.98 0.01 0.02
Matches are distributed among these distances:
322 116 0.18
323 6 0.01
324 284 0.45
325 2 0.00
326 65 0.10
328 163 0.26
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (324 bp):
TTAAAAGGACTGATTTATTATTTTTTGAAAGTTGAGTGACGGAATTGAAATCAGAATGACTGTTT
TATCAGTTGCATCAAAGTTGAGTGACTGTCGGTGTAATTTACCCATTATTTTAGTTATTTATATG
AAAAATCATATTAAATACTAGATGTTTAAAAATAATATTTTTTTGAACTAATTAATAACAACACA
TGAAATATATAATATTAAAATGAAAAATATTAGAAGCTTTATATATATATATAGATGTGTGCGTG
AAAATTACTTATTTAGAATACAGAGTTGTGTTTAAAATTAACATACAATAAATAATAGTAAGCT
Found at i:45838377 original size:42 final size:42
Alignment explanation
Indices: 45838317--45838402 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
45838307 TATGTGATTG
**
45838317 ATATTGAAATGGCCAAGATGAGAAATGAATATGAGATAAGAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
* *
45838359 ATATTGAATTGGAAAAGATGAGAAATGAATATGAGATGAGAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
45838401 AT
1 AT
45838403 GTGATATGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.23
Consensus pattern (42 bp):
ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATAAGAA
Found at i:45838397 original size:18 final size:18
Alignment explanation
Indices: 45838332--45838403 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 18
45838322 GAAATGGCCA
45838332 AGATGAGAAATGAATATG
1 AGATGAGAAATGAATATG
*
45838350 AGATAAGAAATATTGAAT-TGG
1 AGATGAG-AA-A-TGAATAT-G
45838371 AAAAGATGAGAAATGAATATG
1 ---AGATGAGAAATGAATATG
45838392 AGATGAGAAATG
1 AGATGAGAAATG
45838404 TGATATGTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
18 18 0.41
19 2 0.05
20 2 0.05
21 12 0.27
22 2 0.05
23 2 0.05
24 6 0.14
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.22
Consensus pattern (18 bp):
AGATGAGAAATGAATATG
Found at i:45838941 original size:25 final size:22
Alignment explanation
Indices: 45838907--45838951 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 22
45838897 TAGTTGAGGC
45838907 AATGTTGGTATGGTAGCTTAGCAT
1 AATGTTGGTAT-GT-GCTTAGCAT
45838931 AATGCTTGGTATGTGCTTAGC
1 AATG-TTGGTATGTGCTTAGC
45838952 TTCAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.38
Consensus pattern (22 bp):
AATGTTGGTATGTGCTTAGCAT
Found at i:45842962 original size:57 final size:57
Alignment explanation
Indices: 45842893--45843010 Score: 227
Period size: 57 Copynumber: 2.1 Consensus size: 57
45842883 TTTATCTTAA
*
45842893 TATTCCTTTAGGGGCGTCACTACCTAAGTTCTTAGTTCTATTCAAATTAGACCAATT
1 TATTCCTTTAGGGGCGTCACTACCTAAGTTCTTAGTTCTATTCAAATTAAACCAATT
45842950 TATTCCTTTAGGGGCGTCACTACCTAAGTTCTTAGTTCTATTCAAATTAAACCAATT
1 TATTCCTTTAGGGGCGTCACTACCTAAGTTCTTAGTTCTATTCAAATTAAACCAATT
45843007 TATT
1 TATT
45843011 ATGATTTAGT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (57 bp):
TATTCCTTTAGGGGCGTCACTACCTAAGTTCTTAGTTCTATTCAAATTAAACCAATT
Found at i:45845481 original size:45 final size:45
Alignment explanation
Indices: 45845317--45845485 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 45
45845307 ATTAGAAACG
* *
45845317 AGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCA
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
* * * **
45845362 AGTAACACCATGACTGAAAGATGTTATGGCATCACGATT-TCATTG
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCT-ATCA
* * * *
45845407 AGTAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCA
1 AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
*
45845452 AGTAAGACCAT-AGCTGAAAGACGTCATGACATCA
1 AGTAAGACCATGA-CTGAAAGACGTTATGACATCA
45845486 TGAATTAAAG
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.02
45 103 0.97
46 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (45 bp):
AGTAAGACCATGACTGAAAGACGTTATGACATCACGATTCTATCA
Found at i:45845485 original size:90 final size:90
Alignment explanation
Indices: 45845316--45845485 Score: 234
Period size: 90 Copynumber: 1.9 Consensus size: 90
45845306 TATTAGAAAC
* * * * *
45845316 GAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCAAGTAACACCATGACTGAAA
1 GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAA
* * *
45845381 GATGTTATGGCATCACGATTTCATT
66 GACGTCATGACATCACGATTTCATT
* *
45845406 GAGTAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCAAGTAAGACCAT-AGCTGAA
1 GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGA-CTGAA
45845470 AGACGTCATGACATCA
65 AGACGTCATGACATCA
45845486 TGAATTAAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
89 1 0.01
90 68 0.99
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (90 bp):
GAGTAAAACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAA
GACGTCATGACATCACGATTTCATT
Found at i:45845507 original size:90 final size:90
Alignment explanation
Indices: 45845319--45845507 Score: 211
Period size: 90 Copynumber: 2.1 Consensus size: 90
45845309 TAGAAACGAG
* * * * *
45845319 TAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCAAGTAACACCATGACTGAAAGAT
1 TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAAGAC
* * * ** *
45845384 GTTATGGCATCACGATTTCATTGAG
66 GTCATGACATCACGAATTCAAAGAA
* * *
45845409 TAAAACCATGAATGAAATACGTTATGACATCACAATTCTATCAAGTAAGACCAT-AGCTGAAAGA
1 TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGA-CTGAAAGA
*
45845473 CGTCATGACATCATGAATT-AAAGAAA
65 CGTCATGACATCACGAATTCAAAG-AA
45845499 TAAGACCAT
1 TAAGACCAT
45845508 AGTTGAAAGA
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 3 0.04
90 78 0.96
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (90 bp):
TAAGACCATGAATGAAAGACGTTATGACATCACAATTCTATCAAGTAACACCATGACTGAAAGAC
GTCATGACATCACGAATTCAAAGAA
Found at i:45845663 original size:45 final size:45
Alignment explanation
Indices: 45845496--45845664 Score: 194
Period size: 45 Copynumber: 3.7 Consensus size: 45
45845486 TGAATTAAAG
* * * *
45845496 AAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACG--AGAAT
* * * * *
45845543 GAATAAGAACATGGTTGAAAGATACTATGGAATCAAGACAAGAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAAT
* * * *
45845588 GAATAAAACCATGGCTGAAAGGCACTATGGCATCAAGACGAGAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAAT
*
45845633 AAATAAGACCATGGTTGAAAGACACCATGGCA
1 AAATAAGACCATGGTTGAAAGACACTATGGCA
45845665 CACTCCTATC
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 69 0.68
47 32 0.32
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (45 bp):
AAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAAT
Found at i:45848304 original size:75 final size:75
Alignment explanation
Indices: 45848180--45848387 Score: 380
Period size: 75 Copynumber: 2.8 Consensus size: 75
45848170 TAACCGTTAT
*
45848180 CGGTGGATTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGGTTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
45848245 ATTTAAGATA
66 ATTTAAGATA
* * *
45848255 TGGTGGGTTCAACACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGGAACCCCTTTCAC
1 CGGTGGGTTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
45848320 ATTTAAGATA
66 ATTTAAGATA
45848330 CGGTGGGTTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
1 CGGTGGGTTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
45848388 TTCGGGGGAA
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 126 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (75 bp):
CGGTGGGTTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAGATA
Found at i:45848471 original size:102 final size:102
Alignment explanation
Indices: 45848290--45848489 Score: 330
Period size: 102 Copynumber: 2.0 Consensus size: 102
45848280 CCAATGAGTC
* * * *
45848290 GGGGAATCAGCACTTAGGAACCCCTTTCACATTTAAGATACGGTGGGTTCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGATTCAGCACTTAGCAACCA
* *
45848355 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTCG
66 CCAATGAATAGGGGAATCAGCACTTAGCAACCCTTCG
45848392 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGAATT-AGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGG-ATTCAGCACTTAGCAACC
45848456 ACCAATGAATAGGGGAATCAGCACTTAGCAACCC
65 ACCAATGAATAGGGGAATCAGCACTTAGCAACCC
45848490 CTTTTTTATT
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 89 0.98
103 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACAGTGGATTCAGCACTTAGCAACCA
CCAATGAATAGGGGAATCAGCACTTAGCAACCCTTCG
Found at i:45855758 original size:33 final size:33
Alignment explanation
Indices: 45855712--45855830 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 33
45855702 TTAACCGTTA
*
45855712 TCGGTGGATTCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAG
* * *
45855746 TCGGGGAATCAGCACTTAACAACCCCTTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--TGAG
*
45855785 ATACGTGGG-TTCAGCACTTAGCAACCACCAATGAG
1 -T-CG-GGGAATCAGCACTTAGCAACCACCAATGAG
45855820 TCGGGGAATCA
1 TCGGGGAATCA
45855831 CTAATGAGTC
Statistics
Matches: 66, Mismatches: 9, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
32 3 0.05
33 24 0.36
34 5 0.08
35 3 0.05
36 2 0.03
37 2 0.03
38 2 0.03
39 3 0.05
40 1 0.02
41 18 0.27
42 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAG
Found at i:45855931 original size:33 final size:33
Alignment explanation
Indices: 45855889--45856039 Score: 116
Period size: 33 Copynumber: 4.5 Consensus size: 33
45855879 TACGGTGGGT
45855889 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
*
45855922 TCAGCACTTAGCAACC-CC--T-CG--GGGGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
* *
45855949 TCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAA
1 TCAGCACTTAGCAA-CCAC--CA-A--TGAG-T-CGG-GGAA
* * *
45855991 TCAGCACTTAGCAACCACCAATGAATAGGAGAA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
*
45856024 TCAACACTTAGCAACC
1 TCAGCACTTAGCAACC
45856040 CCTTTTTTAT
Statistics
Matches: 95, Mismatches: 8, Indels: 30
0.71 0.06 0.23
Matches are distributed among these distances:
27 20 0.21
28 2 0.02
29 2 0.02
30 1 0.01
31 1 0.01
32 2 0.02
33 34 0.36
34 2 0.02
35 1 0.01
36 3 0.03
37 1 0.01
38 1 0.01
39 2 0.02
41 5 0.05
42 18 0.19
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGAGTCGGGGAA
Found at i:45856025 original size:102 final size:102
Alignment explanation
Indices: 45855841--45856042 Score: 332
Period size: 102 Copynumber: 2.0 Consensus size: 102
45855831 CTAATGAGTC
* * **
45855841 GGGGAATCAGCACTTAGGAACCCCTTTCACATTTAAGATACGGTGGGTTCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* * * *
45855906 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAATAGGAGAATCAACACTTAGCAACCCCTCG
45855943 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
45856008 CCAATGAATAGGAGAATCAACACTTAGCAACCCCT
66 CCAATGAATAGGAGAATCAACACTTAGCAACCCCT
45856043 TTTTTATTCA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATAGGAGAATCAACACTTAGCAACCCCTCG
Found at i:45857733 original size:15 final size:15
Alignment explanation
Indices: 45857697--45857733 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
45857687 AGACACAGGC
* *
45857697 GTGTGTCTCAGTTGT
1 GTGTGTTTCAATTGT
45857712 GTGTGTTTCAATTGT
1 GTGTGTTTCAATTGT
45857727 GTGTGTT
1 GTGTGTT
45857734 CCCTATAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.08, G:0.32, T:0.51
Consensus pattern (15 bp):
GTGTGTTTCAATTGT
Found at i:45858912 original size:24 final size:24
Alignment explanation
Indices: 45858880--45858925 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
45858870 GGGTGTGACA
45858880 TGAAATGTGGCACTTCAATGCATT
1 TGAAATGTGGCACTTCAATGCATT
*
45858904 TGAAATGTGGCACTTCAGTGCA
1 TGAAATGTGGCACTTCAATGCA
45858926 AATGAAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (24 bp):
TGAAATGTGGCACTTCAATGCATT
Found at i:45858931 original size:24 final size:24
Alignment explanation
Indices: 45858879--45858932 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
45858869 GGGGTGTGAC
*
45858879 ATGAAATGTGGCACTTCAATGCAT
1 ATGAAATGTGGCACTTCAATGCAA
* *
45858903 TTGAAATGTGGCACTTCAGTGCAA
1 ATGAAATGTGGCACTTCAATGCAA
45858927 ATGAAA
1 ATGAAA
45858933 ATGGAACTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (24 bp):
ATGAAATGTGGCACTTCAATGCAA
Found at i:45859935 original size:29 final size:29
Alignment explanation
Indices: 45859903--45859964 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
45859893 CTTTGGTACC
*
45859903 TGTACTATT-TTTATTATCAGTTTGACCTT
1 TGTACT-TTATTTATTATCAGTTTGACATT
* * *
45859932 TGTAGTTTATTTTTTATTAGTTTGACATT
1 TGTACTTTATTTATTATCAGTTTGACATT
45859961 TGTA
1 TGTA
45859965 TTTTCATTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (29 bp):
TGTACTTTATTTATTATCAGTTTGACATT
Found at i:45860524 original size:20 final size:20
Alignment explanation
Indices: 45860501--45860538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45860491 TTTTGGGACT
*
45860501 TTTTTTCGATTTTTTTATGG
1 TTTTTGCGATTTTTTTATGG
*
45860521 TTTTTGGGATTTTTTTAT
1 TTTTTGCGATTTTTTTAT
45860539 ATTTTAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.16, T:0.71
Consensus pattern (20 bp):
TTTTTGCGATTTTTTTATGG
Found at i:45862162 original size:37 final size:37
Alignment explanation
Indices: 45862120--45862190 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
45862110 ATAGTCAGTG
45862120 ATCGAGTTTTAGGTCATCATTTGCGTTATGCTTAGTA
1 ATCGAGTTTTAGGTCATCATTTGCGTTATGCTTAGTA
45862157 ATCGAGTTTTAGGTCATCATTTGCGTTATGCTTA
1 ATCGAGTTTTAGGTCATCATTTGCGTTATGCTTA
45862191 CCATGTGACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (37 bp):
ATCGAGTTTTAGGTCATCATTTGCGTTATGCTTAGTA
Found at i:45866334 original size:21 final size:20
Alignment explanation
Indices: 45866292--45866331 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
45866282 AGTTGATTAG
*
45866292 AAATATTTTGAATTTAAATT
1 AAATAATTTGAATTTAAATT
*
45866312 AAATAATTTGTATTTAAATT
1 AAATAATTTGAATTTAAATT
45866332 TAATTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
AAATAATTTGAATTTAAATT
Found at i:45872053 original size:20 final size:20
Alignment explanation
Indices: 45872024--45872078 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
45872014 TTAGAGGGGT
* * *
45872024 TGTACAGATACATTAGGAGA
1 TGTACTGATACATGAGGACA
*
45872044 TGTACTGATACTATGAGGCCA
1 TGTACTGATAC-ATGAGGACA
*
45872065 TGTATTGATACATG
1 TGTACTGATACATG
45872079 CCTCTCTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (20 bp):
TGTACTGATACATGAGGACA
Found at i:45872977 original size:16 final size:16
Alignment explanation
Indices: 45872956--45873007 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
45872946 TTTGGTTCGC
45872956 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45872972 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
45872988 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
45873004 TGTA
1 TGTA
45873008 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:45873093 original size:39 final size:43
Alignment explanation
Indices: 45872988--45873097 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
45872978 GGATTAGAGG
45872988 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
45873033 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
45873073 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
45873098 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:45873264 original size:18 final size:17
Alignment explanation
Indices: 45873243--45873277 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45873233 TTATTATTAA
*
45873243 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
45873261 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
45873278 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:45873343 original size:157 final size:157
Alignment explanation
Indices: 45873130--45873446 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
45873120 TAGAATACCC
*
45873130 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
* * *
45873195 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATAATTATTAAATATATTATAATTAAAA
*
45873260 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAAGAA
* *
45873287 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
45873352 ATATCAATAATAAATAATTTAATCATATTTAAACATAATAATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATAATTATTAAATATATTATAATTAAAA
45873417 TATATAATTTAATAAAATTCTTAAGAA
131 TATATAATTTAATAAAATTCTTAAGAA
45873444 TTA
1 TTA
45873447 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTATTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATAATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAAGAA
Found at i:45873518 original size:120 final size:121
Alignment explanation
Indices: 45873378--45873675 Score: 485
Period size: 120 Copynumber: 2.5 Consensus size: 121
45873368 ATTTAATCAT
* *
45873378 ATTTAAACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAGA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAGA
* *
45873443 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
*
45873500 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAGA
*
45873563 ATTAATATTCTTATATGAATTTACTCAAATCATATTATATGATACTATAAAAGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* * *
45873619 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
45873676 TAAAATAATT
Statistics
Matches: 166, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
119 3 0.02
120 158 0.95
121 4 0.02
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAGA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:45873548 original size:14 final size:15
Alignment explanation
Indices: 45873499--45873550 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
45873489 GTAAAATATA
45873499 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
45873514 TATTAAATATATTAT
1 AATTAAATATATTAT
45873529 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
45873542 AATTTAATA
1 AATTAAATA
45873551 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:45873785 original size:101 final size:93
Alignment explanation
Indices: 45873618--45873898 Score: 286
Period size: 91 Copynumber: 3.0 Consensus size: 93
45873608 TATAAAAGAA
* * * *
45873618 AATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAAAA
1 AATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT----
* * * *
45873681 TAATTATAACTAATAAATTATATTTTATGAATTTGTAT
61 T-A--ATAA-T-ATAAATTTTATTATATGAATTTATAC
* *
45873719 AATTTAAAATAA-TAATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGAT
1 AATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT
*
45873783 -A-ATAAATTTTCTTATATGAATTTATAC
65 AATATAAATTTTATTATATGAATTTATAC
* *
45873810 AATTTAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
* *
45873875 ATA-AAATGTTCTTATATGAATTTA
66 ATATAAATTTTATTATATGAATTTA
45873899 CTAAAATCAA
Statistics
Matches: 158, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
91 77 0.49
92 24 0.15
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 6 0.04
101 45 0.28
102 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (93 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
ATATAAATTTTATTATATGAATTTATAC
Found at i:45878659 original size:23 final size:23
Alignment explanation
Indices: 45878599--45878661 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
45878589 TGTACTGACT
45878599 AACAAATCAAGAACAATTTCCAGC
1 AACAAATCAA-AACAATTTCCAGC
* *
45878623 AGAC-AACCAAAACAATTTCTAG-
1 A-ACAAATCAAAACAATTTCCAGC
45878645 AACAAATCAATAACAAT
1 AACAAATCAA-AACAAT
45878662 ATCAAAACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 2 0.06
22 6 0.18
23 17 0.52
24 6 0.18
25 2 0.06
ACGTcount: A:0.54, C:0.22, G:0.06, T:0.17
Consensus pattern (23 bp):
AACAAATCAAAACAATTTCCAGC
Found at i:45880016 original size:5 final size:5
Alignment explanation
Indices: 45880001--45880030 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
45879991 GACTGGTTGT
45880001 AAAGAA AAAGA AAAGA AAAGA AAAGA AAAG
1 AAAG-A AAAGA AAAGA AAAGA AAAGA AAAG
45880031 GTTGAGAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:45894312 original size:25 final size:25
Alignment explanation
Indices: 45894257--45894317 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
45894247 ACGATAAACA
* *
45894257 GTAAGCTCCTCCGAGCTGAATAACG
1 GTAAGCTCATACGAGCTGAATAACG
* *
45894282 GCAAGCTCATACGAGCT-AAGTATCG
1 GTAAGCTCATACGAGCTGAA-TAACG
45894307 GTAAGCTCATA
1 GTAAGCTCATA
45894318 AAAGCTAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 2 0.07
25 28 0.93
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATAACG
Found at i:45897696 original size:17 final size:17
Alignment explanation
Indices: 45897666--45897698 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
45897656 ATGCGAACAT
45897666 AAAAATAAACTAAAATA
1 AAAAATAAACTAAAATA
45897683 AAAAACTAAA-TAAAAT
1 AAAAA-TAAACTAAAAT
45897699 TGTTTAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATAAACTAAAATA
Found at i:45906483 original size:70 final size:70
Alignment explanation
Indices: 45906327--45906909 Score: 445
Period size: 70 Copynumber: 8.3 Consensus size: 70
45906317 GGGAACATAA
* * * * * * *
45906327 GCTCACGCTAACTGTTTTGGAGGCTATG-G-CATTGAACCTGCAAGCCTTAAGATACCAACTAGG
1 GCTCGCGCTAACTATTTTGGAGG-T-TGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGG
45906390 AGCGTAG
64 AGCGTAG
* * * * * * * *
45906397 GCTCGCACTAAATATTTTAGAGGTTGCAATATTAAACCTGCAAGCCTTAGGATACCAGTTGAGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
*
45906462 CATAG
66 CGTAG
* * * ** *
45906467 GCTCGCGCTAACTATTTTGAAGGCTACGATATTGAACCTATGAGCCTTAAGATACCAGCTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
** *
45906532 TATAA
66 CGTAG
* * * * * * * * * * * **
45906537 GCTCACGATAACTGTTTTGAAGGTTGCGGTGTTGTACTTACGAGTCTTAGGATATCAATTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
45906602 CGTAG
66 CGTAG
* * * * * * *
45906607 GCTTGCGCTAACTATTTTAGAGGCTGTGGTATTGAACCTACGAGCCTTAGGACACCAGCTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
45906672 CGTAG
66 CGTAG
* * * * * * *
45906677 GCTTGCACTAATTATTTTGGAGGTTGTGATATTGAACCTACAAGCCTTAAGATATCAGTTGGGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
*
45906742 CGTAA
66 CGTAG
* * * * * * * *
45906747 GCTCGTGTTAACTATTTTGGAGGCTATG-G-TATTAAACCTGCGAGTCTTAGGATATCAGCTAGG
1 GCTCGCGCTAACTATTTTGGAGG-T-TGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGG
45906810 AGCGTAG
64 AGCGTAG
** * * * * * * *
45906817 ATTCGCGCTAACTATTTTGGAGGCTACGATATTAAACCTGCAAGCCTTAGGATATCAACTAGGAG
1 GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
*
45906882 TGTAG
66 CGTAG
* *
45906887 GTTCGTGCTAACTATTTTGGAGG
1 GCTCGCGCTAACTATTTTGGAGG
45906910 CTGTGTGTAA
Statistics
Matches: 407, Mismatches: 100, Indels: 12
0.78 0.19 0.02
Matches are distributed among these distances:
68 3 0.01
69 2 0.00
70 398 0.98
71 2 0.00
72 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (70 bp):
GCTCGCGCTAACTATTTTGGAGGTTGCGATATTGAACCTACAAGCCTTAGGATACCAGCTGGGAG
CGTAG
Found at i:45906561 original size:140 final size:139
Alignment explanation
Indices: 45906308--45906911 Score: 514
Period size: 140 Copynumber: 4.3 Consensus size: 139
45906298 AGCCTTTATA
* * * * * * * * * *
45906308 ATATCATTTGGGAACATAAGCTCACGCTAACTGTTTTGGAGGCTATGGCATTGAACCTGCAAGCC
1 ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGAAGGCTATGGTATTGAACCTACGAGCC
* * * * * * * *
45906373 TTAAGATACCAACTAGGAGCGTAGGCTCGCAC-TAAATATTTTAGAGGTTGCAATATTAAACCTG
66 TTAGGATACCAGCTGGGAGCGTAAGCT--CACGTAACTATTTTGGAGGTTGCGATATTAAACCTA
45906437 CAAGCCTTAGG
129 CAAGCCTTAGG
* * * * * *
45906448 ATACCAGTTGAGAGCATAGGCTCGCGCTAACTATTTTGAAGGCTACGATATTGAACCTATGAGCC
1 ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGAAGGCTATGGTATTGAACCTACGAGCC
* ** * * * * ** *
45906513 TTAAGATACCAGCTGGGAGTATAAGCTCACGATAACTGTTTTGAAGGTTGCGGTGTTGTACTTAC
66 TTAGGATACCAGCTGGGAGCGTAAGCTCACG-TAACTATTTTGGAGGTTGCGATATTAAACCTAC
* *
45906578 GAGTCTTAGG
130 AAGCCTTAGG
* * *
45906588 ATATCAATTGGGAGCGTAGGCTTGCGCTAACTATTTT-AGAGGCTGTGGTATTGAACCTACGAGC
1 ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGA-AGGCTATGGTATTGAACCTACGAGC
* * * * *
45906652 CTTAGGACACCAGCTGGGAGCGTAGGCTTGCAC-TAATTATTTTGGAGGTTGTGATATTGAACCT
65 CTTAGGATACCAGCTGGGAGCGTAAGC-T-CACGTAACTATTTTGGAGGTTGCGATATTAAACCT
*
45906716 ACAAGCCTTAAG
128 ACAAGCCTTAGG
* * * * * * *
45906728 ATATCAGTTGGGAGCGTAAGCTCGTGTTAACTATTTTGGAGGCTATGGTATTAAACCTGCGAGTC
1 ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGAAGGCTATGGTATTGAACCTACGAGCC
* * * * * * *
45906793 TTAGGATATCAGCTAGGAGCGT-AGATTCGCGCTAACTATTTTGGAGGCTACGATATTAAACCTG
66 TTAGGATACCAGCTGGGAGCGTAAG-CTCACG-TAACTATTTTGGAGGTTGCGATATTAAACCTA
45906857 CAAGCCTTAGG
129 CAAGCCTTAGG
** * * * * *
45906868 ATATCAACTAGGAGTGTAGGTTCGTGCTAACTATTTTGGAGGCT
1 ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGAAGGCT
45906912 GTGTGTAACA
Statistics
Matches: 368, Mismatches: 87, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
138 5 0.01
139 3 0.01
140 356 0.97
141 1 0.00
142 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (139 bp):
ATATCAGTTGGGAGCGTAGGCTCGCGCTAACTATTTTGAAGGCTATGGTATTGAACCTACGAGCC
TTAGGATACCAGCTGGGAGCGTAAGCTCACGTAACTATTTTGGAGGTTGCGATATTAAACCTACA
AGCCTTAGG
Found at i:45906905 original size:210 final size:209
Alignment explanation
Indices: 45906308--45906914 Score: 615
Period size: 210 Copynumber: 2.9 Consensus size: 209
45906298 AGCCTTTATA
* * * * * *
45906308 ATATCATTTGGGAACATAAGCTCACGCTAACTGTTTTGGAGGCTATGGCATTGAACCTGCAAGCC
1 ATATCAGTTGGGAGCATAAGCTCACGATAACTGTTTTGGAGGCTATGGTATTGAACCTGCGAGTC
* * ** * * * *
45906373 TTAAGATACCAACTAGGAGCGTAGGCTCGCACTAAATATTTTAGAGGTTGCAATATTAAACCTGC
66 TTAGGATATCAACTAGGAGCGTAGATTCGCGCTAACTATTTTAGAGGCTGCGATATTAAACCTGC
* * * * * * **
45906438 AAGCCTTAGGATACCAGTTGAGAGCATAGGCTCGCGCTAACTATTTTGAAGGCTACGATATTGAA
131 AAGCCTTAGGATACAACTAG-GAGCGTAGGTTCGCGCTAACTATTTTGGAGGCTGTGATATTGAA
**
45906503 CCTATGAGCCTTAAG
195 CCTACAAGCCTTAAG
* * * * * ** * * * *
45906518 ATACCAGCTGGGAGTATAAGCTCACGATAACTGTTTTGAAGGTTGCGGTGTTGTACTTACGAGTC
1 ATATCAGTTGGGAGCATAAGCTCACGATAACTGTTTTGGAGGCTATGGTATTGAACCTGCGAGTC
* * * * * * *
45906583 TTAGGATATCAATTGGGAGCGTAGGCTT-GCGCTAACTATTTTAGAGGCTGTGGTATTGAACCTA
66 TTAGGATATCAACTAGGAGCGTA-GATTCGCGCTAACTATTTTAGAGGCTGCGATATTAAACCTG
* * * * * * *
45906647 CGAGCCTTAGGACACCAGCTGGGAGCGTAGGCTT-GCACTAATTATTTTGGAGGTTGTGATATTG
130 CAAGCCTTAGGATA-CAACTAGGAGCGTAGG-TTCGCGCTAACTATTTTGGAGGCTGTGATATTG
45906711 AACCTACAAGCCTTAAG
193 AACCTACAAGCCTTAAG
* ** * * *
45906728 ATATCAGTTGGGAGCGTAAGCTCGTGTTAACTATTTTGGAGGCTATGGTATTAAACCTGCGAGTC
1 ATATCAGTTGGGAGCATAAGCTCACGATAACTGTTTTGGAGGCTATGGTATTGAACCTGCGAGTC
* * *
45906793 TTAGGATATCAGCTAGGAGCGTAGATTCGCGCTAACTATTTTGGAGGCTACGATATTAAACCTGC
66 TTAGGATATCAACTAGGAGCGTAGATTCGCGCTAACTATTTTAGAGGCTGCGATATTAAACCTGC
* *
45906858 AAGCCTTAGGATATCAACTAGGAGTGTAGGTTCGTGCTAACTATTTTGGAGGCTGTG
131 AAGCCTTAGGATA-CAACTAGGAGCGTAGGTTCGCGCTAACTATTTTGGAGGCTGTG
45906915 TGTAACACCT
Statistics
Matches: 308, Mismatches: 84, Indels: 10
0.77 0.21 0.02
Matches are distributed among these distances:
209 5 0.02
210 297 0.96
211 6 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (209 bp):
ATATCAGTTGGGAGCATAAGCTCACGATAACTGTTTTGGAGGCTATGGTATTGAACCTGCGAGTC
TTAGGATATCAACTAGGAGCGTAGATTCGCGCTAACTATTTTAGAGGCTGCGATATTAAACCTGC
AAGCCTTAGGATACAACTAGGAGCGTAGGTTCGCGCTAACTATTTTGGAGGCTGTGATATTGAAC
CTACAAGCCTTAAG
Found at i:45907265 original size:13 final size:13
Alignment explanation
Indices: 45907249--45907278 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
45907239 CCTGTGTAAC
45907249 TCACTAAGTAGGG
1 TCACTAAGTAGGG
*
45907262 TCACTATGTAGGG
1 TCACTAAGTAGGG
45907275 TCAC
1 TCAC
45907279 ACGCCCGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (13 bp):
TCACTAAGTAGGG
Found at i:45908180 original size:40 final size:40
Alignment explanation
Indices: 45908121--45908287 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
45908111 TAAGGAACCA
* **
45908121 AAGTACAAA-AGGGGCATGTAGGTGCAATCAGGGGTACCG
1 AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
45908160 AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
1 AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
* * *
45908200 AAGTACAAAC-AGAGGCACGTATATGCAATCAGGCGTACTG
1 AAGTACAAACAAG-GGCATGTATATGCAATCAGGGGTACCG
* * * * * *
45908240 AAGTACAAAC-AGTGACACGTCTATGCAATCAGAGCTATCG
1 AAGTACAAACAAG-GGCATGTATATGCAATCAGGGGTACCG
45908280 AAGTACAA
1 AAGTACAA
45908288 TAATTTTCTA
Statistics
Matches: 112, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 11 0.10
40 101 0.90
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (40 bp):
AAGTACAAACAAGGGCATGTATATGCAATCAGGGGTACCG
Found at i:45910523 original size:51 final size:51
Alignment explanation
Indices: 45910447--45910556 Score: 193
Period size: 51 Copynumber: 2.2 Consensus size: 51
45910437 CTATGTGCAG
* *
45910447 CAGTAACATTATCCAGTCCATCTGATGTTGCAAAATCACTAGCATATTCAT
1 CAGTAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
45910498 CAGTAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
1 CAGTAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
*
45910549 CAGCAACA
1 CAGTAACA
45910557 ACTTCACTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (51 bp):
CAGTAACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCAT
Found at i:45910763 original size:33 final size:32
Alignment explanation
Indices: 45910681--45910794 Score: 102
Period size: 33 Copynumber: 3.5 Consensus size: 32
45910671 CACCTCTCCT
* * * *
45910681 ACATCACCCTTCCCACCAAATTCTACCTTTTTC
1 ACATCACACTCCCCATCAAATTCTACC-CTTTC
* * *
45910714 AAATCACATTCACCATCAAATTCTACCCTTTC
1 ACATCACACTCCCCATCAAATTCTACCCTTTC
* * * *
45910746 ATCATCACCCTCCCCATCAACTTCCACCCCTTTA
1 A-CATCACACTCCCCATCAAATTCTA-CCCTTTC
45910780 ACATCACACTCCCCA
1 ACATCACACTCCCCA
45910795 AAAGTCAACA
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
32 5 0.08
33 52 0.81
34 7 0.11
ACGTcount: A:0.28, C:0.44, G:0.00, T:0.28
Consensus pattern (32 bp):
ACATCACACTCCCCATCAAATTCTACCCTTTC
Found at i:45911613 original size:117 final size:117
Alignment explanation
Indices: 45911403--45911613 Score: 332
Period size: 117 Copynumber: 1.8 Consensus size: 117
45911393 GGTAACAGAA
* * * * * * *
45911403 ATCAACATCATCGGGACCATTGTCGCATCACAAATCGACAAAAGAAACCCTATATTGTGGCACTT
1 ATCAACAACATCGGGACCACTGTCACATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
**
45911468 AAATTGCAATAATAAATCACAACTAACCATCTACAATTTTGATAACAGTTTT
66 AAATTGCAATAATAAATCACAAAAAACCATCTACAATTTTGATAACAGTTTT
*
45911520 ATCAACAACATTGGGACCACTGTCACATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
1 ATCAACAACATCGGGACCACTGTCACATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
45911585 AAATTGCAATAATAAATCACAAAAAACCA
66 AAATTGCAATAATAAATCACAAAAAACCA
45911614 ACACATCAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 84 1.00
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (117 bp):
ATCAACAACATCGGGACCACTGTCACATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
AAATTGCAATAATAAATCACAAAAAACCATCTACAATTTTGATAACAGTTTT
Found at i:45911819 original size:16 final size:16
Alignment explanation
Indices: 45911800--45911836 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
45911790 GAATGCTAAC
*
45911800 GATTTAAGGATTTCAA
1 GATTTAAGGATTTAAA
*
45911816 GATTTAGGGATTTAAA
1 GATTTAAGGATTTAAA
45911832 GATTT
1 GATTT
45911837 TAAAGATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (16 bp):
GATTTAAGGATTTAAA
Found at i:45916604 original size:67 final size:67
Alignment explanation
Indices: 45916509--45916668 Score: 223
Period size: 67 Copynumber: 2.4 Consensus size: 67
45916499 CATAGTTGGG
* *
45916509 CTATGGTCTTACACATCATACCCCATGTTTAATATCCTGGCAGACTCTCTATGTTGTCATAGTC-
1 CTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACTCTCTATGTTGTCATAG-CG
45916573 AAA
65 AAA
* * * *
45916576 CTATGGTCTTACACATCATACCCTATGTTTAATGGCCTAGCGGACTCTCTATGTTGTCATAGCGG
1 CTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACTCTCTATGTTGTCATAGCGA
*
45916641 AG
66 AA
* *
45916643 CTATGGTCTTACACGTTATACCCCAT
1 CTATGGTCTTACACATCATACCCCAT
45916669 TATAGCTTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
66 1 0.01
67 81 0.99
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (67 bp):
CTATGGTCTTACACATCATACCCCATGTTTAATAGCCTAGCAGACTCTCTATGTTGTCATAGCGA
AA
Found at i:45917474 original size:13 final size:13
Alignment explanation
Indices: 45917424--45917475 Score: 70
Period size: 13 Copynumber: 4.1 Consensus size: 13
45917414 AGTTTGGCAA
*
45917424 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
45917437 TGC-TTTGAAAAG
1 TGCTTTTGAAAAG
* *
45917449 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
45917462 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
45917475 T
1 T
45917476 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 11 0.33
13 22 0.67
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:45924867 original size:40 final size:40
Alignment explanation
Indices: 45924822--45924999 Score: 175
Period size: 40 Copynumber: 4.4 Consensus size: 40
45924812 ACTATGTTTA
*
45924822 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATATG
* * *
45924862 ACACTTAGTGTGCGA-TTGGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGCGATTTGAG-ATAGCTTCGGCTATATATG
* ** * *
45924902 GCACTTAGTGTGTGAGACTGAGATAGCTTCGGCTATGTAAG
1 GCACTTAGTGTGCGA-TTTGAGATAGCTTCGGCTATATATG
45924943 GCACTTAGTGTGCGGGATTAT-A-ATAGCTTCGGCTATGCA-ATG
1 GCACTTAGTGTGC--GATT-TGAGATAGCTTCGGCTAT--ATATG
*
45924985 GCATTTAGTGTGCGA
1 GCACTTAGTGTGCGA
45925000 AACATTAAGT
Statistics
Matches: 113, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
39 4 0.04
40 46 0.41
41 42 0.37
42 18 0.16
43 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATATG
Found at i:45924937 original size:41 final size:41
Alignment explanation
Indices: 45924822--45924996 Score: 153
Period size: 41 Copynumber: 4.3 Consensus size: 41
45924812 ACTATGTTTA
* * *
45924822 GCACTTAGTGTGCGA-TTTGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGTGAGATTGAGATAGCTTCGGCTATATATG
* * * *
45924862 ACACTTA--GTGTGCGATTGGGAATAGCTTCAGCTATATATG
1 GCACTTAGTGTGTGAGATTGAG-ATAGCTTCGGCTATATATG
* * *
45924902 GCACTTAGTGTGTGAGACTGAGATAGCTTCGGCTATGTAAG
1 GCACTTAGTGTGTGAGATTGAGATAGCTTCGGCTATATATG
* * *
45924943 GCACTTAGTGTGCGGGATT-ATAATAGCTTCGGCTATGCA-ATG
1 GCACTTAGTGTGTGAGATTGA-GATAGCTTCGGCTAT--ATATG
*
45924985 GCATTTAGTGTG
1 GCACTTAGTGTG
45924997 CGAAACATTA
Statistics
Matches: 107, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
38 4 0.04
39 4 0.04
40 30 0.28
41 46 0.43
42 23 0.21
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGTGAGATTGAGATAGCTTCGGCTATATATG
Found at i:45924996 original size:81 final size:80
Alignment explanation
Indices: 45924822--45924978 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 80
45924812 ACTATGTTTA
* * * * *
45924822 GCACTTA-GTGTGCGATTTGAGATAGCTTCGGCTATTTATGACACTTAGTGTGCGATTGGGAATA
1 GCACTTAGGTGTGAGA-CTGAGATAGCTTCGGCTATGTAAGACACTTAGTGTGCGATTGAGAATA
45924886 GCTTCAGCTATATATG
65 GCTTCAGCTATATATG
* *
45924902 GCACTTAGTGTGTGAGACTGAGATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGGGATT-ATAA
1 GCACTTAG-GTGTGAGACTGAGATAGCTTCGGCTATGTAAGACACTTAGTGTGC--GATTGAGAA
*
45924966 TAGCTTCGGCTAT
63 TAGCTTCAGCTAT
45924979 GCAATGGCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 7 0.11
81 33 0.51
82 21 0.32
83 4 0.06
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (80 bp):
GCACTTAGGTGTGAGACTGAGATAGCTTCGGCTATGTAAGACACTTAGTGTGCGATTGAGAATAG
CTTCAGCTATATATG
Found at i:45928651 original size:26 final size:25
Alignment explanation
Indices: 45928606--45928659 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
45928596 TCTTTTTCTT
45928606 TATTTAATTATTATAATATAATATA
1 TATTTAATTATTATAATATAATATA
*
45928631 TATTTAAATT-TTAATATTATAATATA
1 TATTT-AATTATT-ATAATATAATATA
45928657 TAT
1 TAT
45928660 ATTTTAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTTAATTATTATAATATAATATA
Found at i:45928683 original size:30 final size:30
Alignment explanation
Indices: 45928615--45928690 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
45928605 TTATTTAATT
* *
45928615 ATTATAATATAATATATATTTAAATTTTAAT
1 ATTATAATAT-ATATATATTTAAATTTAAAA
*
45928646 ATTATAATATATATAT-TTTAACTTTAAAA
1 ATTATAATATATATATATTTAAATTTAAAA
45928675 ATTCATAATATATATA
1 ATT-ATAATATATATA
45928691 CACTTATGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 13 0.32
30 18 0.44
31 10 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTATAATATATATATATTTAAATTTAAAA
Found at i:45940835 original size:97 final size:100
Alignment explanation
Indices: 45940717--45941012 Score: 332
Period size: 97 Copynumber: 2.9 Consensus size: 100
45940707 TTTTGGGTAG
* *
45940717 ATTAAGATAATTAGGAGTTTAAAATAAATTAGGATCATTAGAGTTTTAATTTAGATAAGATAATT
1 ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
45940782 ACAAATTTAATTAATAGGTTAGATAA-A-T-TTT-A
66 A-AAATTTAATTAATAGGTTAGATAATATTATTTAA
* * ** *
45940814 ATTAAGATAATT-GGGGTTTTAAATTAAATTAGGATAATTAGAGTTCTAATTTATTTAATATAAT
1 ATTAAGATAATTAGGAG-TTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAAT
**
45940878 TAATAATTTAAATTAATATATTAGATAATATTTTAGATTTAA
65 TAA-AATTT-AATTAATAGGTTAGATAATA--TT--ATTTAA
* * * **
45940920 ATTAAGATATTTAGGAGTTTAAATTAAACTAGGATAATTAGATTTTTAATTTAGATGTGATAATT
1 ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
* *
45940985 AGGAATTTAATTAATAGGTTGGATAATA
66 A-AAATTTAATTAATAGGTTAGATAATA
45941013 ATTTAGATCT
Statistics
Matches: 163, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
96 4 0.02
97 60 0.37
98 16 0.10
99 1 0.01
102 1 0.01
105 20 0.12
106 58 0.36
107 3 0.02
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.42
Consensus pattern (100 bp):
ATTAAGATAATTAGGAGTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAGATAAGATAATT
AAAATTTAATTAATAGGTTAGATAATATTATTTAA
Found at i:45940896 original size:22 final size:21
Alignment explanation
Indices: 45940860--45940906 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
45940850 ATTAGAGTTC
*
45940860 TAATTTATTTAATATAATTA-A
1 TAATTTAATTAATAT-ATTAGA
45940881 TAATTTAAATTAATATATTAGA
1 TAATTT-AATTAATATATTAGA
45940903 TAAT
1 TAAT
45940907 ATTTTAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TAATTTAATTAATATATTAGA
Found at i:45940983 original size:106 final size:105
Alignment explanation
Indices: 45940808--45941020 Score: 250
Period size: 106 Copynumber: 2.0 Consensus size: 105
45940798 GGTTAGATAA
* * * **
45940808 ATTTTAATTAAGATAATTGGGGTTTTAAATTAAATTAGGATAATTAGAGTTCTAATTTATTTAAT
1 ATTTAAATTAAGATAATTGGAGTTTTAAATTAAACTAGGATAATTAGAGTTCTAATTTAGATAAT
* * *
45940873 ATAATTAATAATTTAAATTAATATATTAGATAATATTTTAG
66 ATAATTAAGAATTT-AATTAATAGATTAGATAATAATTTAG
* * * *
45940914 ATTTAAATTAAGATATTTAGGAG-TTTAAATTAAACTAGGATAATTAGATTTTTAATTTAGAT-G
1 ATTTAAATTAAGATAATT-GGAGTTTTAAATTAAACTAGGATAATTAGAGTTCTAATTTAGATAA
* * *
45940977 TGATAATTAGGAATTTAATTAATAGGTTGGATAATAATTTAG
65 T-ATAATTAAGAATTTAATTAATAGATTAGATAATAATTTAG
45941019 AT
1 AT
45941021 CTGGAAAAAT
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
105 25 0.28
106 62 0.69
107 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.13, T:0.44
Consensus pattern (105 bp):
ATTTAAATTAAGATAATTGGAGTTTTAAATTAAACTAGGATAATTAGAGTTCTAATTTAGATAAT
ATAATTAAGAATTTAATTAATAGATTAGATAATAATTTAG
Found at i:45942519 original size:26 final size:26
Alignment explanation
Indices: 45942488--45942565 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 26
45942478 ATTATTAAAA
45942488 TAAAATTAAAATATTAAATAATTTAT
1 TAAAATTAAAATATTAAATAATTTAT
* *
45942514 TAAAATAATAAATTATGTTAATAATTTAT
1 TAAAAT--TAAAATAT-TAAATAATTTAT
*
45942543 TATATGATT-AAATA-TAAATAATT
1 TA-A-AATTAAAATATTAAATAATT
45942566 AAATATGTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
26 14 0.33
28 11 0.26
29 14 0.33
30 1 0.02
31 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (26 bp):
TAAAATTAAAATATTAAATAATTTAT
Found at i:45943996 original size:20 final size:20
Alignment explanation
Indices: 45943962--45944003 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
45943952 AAACATTTAA
** *
45943962 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
45943982 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
45944002 AT
1 AT
45944004 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:45950012 original size:11 final size:11
Alignment explanation
Indices: 45949976--45950014 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
45949966 ACTGAAAATA
45949976 TATTTATAATC
1 TATTTATAATC
* *
45949987 TATCTATAATA
1 TATTTATAATC
*
45949998 TATTTATATTC
1 TATTTATAATC
45950009 TATTTA
1 TATTTA
45950015 AAAATATGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTATAATC
Found at i:45956114 original size:23 final size:23
Alignment explanation
Indices: 45956087--45956132 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45956077 TTATGGCACA
*
45956087 TTTGTGGCGTATTATGTGATGCC
1 TTTGTGGCGTATTATGTAATGCC
* *
45956110 TTTGTGGTGTATTTTGTAATGCC
1 TTTGTGGCGTATTATGTAATGCC
45956133 CTGGAGGCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.28, T:0.48
Consensus pattern (23 bp):
TTTGTGGCGTATTATGTAATGCC
Found at i:45973821 original size:18 final size:18
Alignment explanation
Indices: 45973800--45973834 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45973790 TGCAATATTA
45973800 ATTTAGCATTGTATTTGT
1 ATTTAGCATTGTATTTGT
*
45973818 ATTTGGCATTGTATTTG
1 ATTTAGCATTGTATTTG
45973835 GCGATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.06, G:0.20, T:0.54
Consensus pattern (18 bp):
ATTTAGCATTGTATTTGT
Found at i:45984967 original size:16 final size:18
Alignment explanation
Indices: 45984941--45984973 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45984931 TTTAATTAGA
45984941 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
45984958 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
45984974 CCCAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:45988680 original size:22 final size:22
Alignment explanation
Indices: 45988667--45988728 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
45988657 TTTTGACTAG
45988667 ATAGATAATCTATTTAAACATA
1 ATAGATAATCTATTTAAACATA
*
45988689 TTAGATAATCTATTTAAACATA
1 ATAGATAATCTATTTAAACATA
* *
45988711 GTATATAAT-TATGTTAAA
1 ATAGATAATCTAT-TTAAA
45988729 TAAGTTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 3 0.08
22 33 0.92
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.40
Consensus pattern (22 bp):
ATAGATAATCTATTTAAACATA
Found at i:45988919 original size:15 final size:15
Alignment explanation
Indices: 45988889--45988917 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45988879 ACTATTAGTA
45988889 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
45988904 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
45988918 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:45994623 original size:247 final size:247
Alignment explanation
Indices: 45994188--45995917 Score: 2962
Period size: 248 Copynumber: 7.0 Consensus size: 247
45994178 AAAACCTTCA
**
45994188 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTAAATTTCCTCTCAAAATTCAAGAT-CA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45994252 CCATTAAAGCACCTTAAGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CTC
* *
45994316 AAATCATGTAAATATGCTTCTAATAATCACAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45994381 CGTTCCAAATCCTTTGATTGAAAATCTTGATTCAAAAATCTTGAGAAATTTCT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
45994434 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* * *
45994499 TCATTAAAGCACCTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCA
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCA
* *
45994564 AATCATGTAAATATGCTTCTAATCATTATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTC
131 AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTC
* * *
45994629 GTTTTAAATTCTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
196 GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
45994681 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45994746 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAGATCATGCAATTATCACTCA
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC-
45994811 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45994876 CGTTTTAAATCCTTTGATTAAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
*
45994929 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTTAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45994994 CCATTAAAGCACCTTAAGCTTTTGAAAAAGATGACATTAATAAAAAATCATGCAATTATCACTCG
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCA
*
45995059 AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTC
131 AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTC
* * * *
45995124 TTTCTAAATCCTTTAATTGAAAATCTTGATTCAAGAATCCTAAGAAATTTCT
196 GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
45995176 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
45995241 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATTCATGCAATTATCACTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAA-TCATGCAATTATCACTC
45995306 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAA-
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTT-AAT
* * * *
45995370 TCTTTCTAAATCCTTTAATTGAAAATCTTGATTCAAGAATCCTAAGAAATTTCT
194 TCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
* * * *
45995424 AATAGATTCATTTTGAGTTGGAACATCCATTGAGTTGTAGATTTCTTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
*
45995489 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAAAATCATGCAATTATCACTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAAT-AAAAAATCATGCAATTATCACTC
*
45995554 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
*
45995619 CTTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
*
45995672 AATAGATCCATTTTGAGTTGGAACATCCACTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45995737 CCATTAAAACACCTTAAGCTTTTGAAGAATATGACATTAATAAAAAAATCATGCAATTATCACTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAAT-AAAAAATCATGCAATTATCACTC
* * *
45995802 AAATCATGTAAATATGCTTCTAATCAGCATAAAAATAAGTTTAGAAATAATAATTACATTTTATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45995867 CGTTCTAAATTCTTTGATTGGAAATCTTGATTCAAGAATCTTGAGAAATTT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTT
45995918 TAGAATATTT
Statistics
Matches: 1415, Mismatches: 62, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
246 60 0.04
247 516 0.36
248 832 0.59
249 7 0.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (247 bp):
AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCA
AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTC
GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
Found at i:45995116 original size:495 final size:494
Alignment explanation
Indices: 45994188--45995917 Score: 3018
Period size: 495 Copynumber: 3.5 Consensus size: 494
45994178 AAAACCTTCA
**
45994188 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTAAATTTCCTCTCAAAATTCAAGAT-CA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45994252 CCATTAAAGCACCTTAAGCTTTTGAAGAATATGACAGTAATAAAAAATCATGCAATTAT-ATCTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCA-CTC
* *
45994316 AAATCATGTAAATATGCTTCTAATAATCACAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45994381 CGTTCCAAATCCTTTGATTGAAAATCTTGATTCAAAAATCTTGAGAAATTTCTAATAGATCCATT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATT
*
45994446 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCATCATTAAAGCAC
260 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
*
45994511 CTTAAGATTTTGAAGAAGATGACACTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
325 CTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
* *
45994576 ATGCTTCTAATCATTATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCGTTT-TAAATTC
390 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTC-TTTCTAAATCC
45994640 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
454 TTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
45994681 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45994746 CCATTAAAGCACCTTAAGATTTTGAAGAAGATGACATTAATAAAAGATCATGCAATTATCACTCA
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTC-
45994811 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45994876 CGTTTTAAATCCTTTGATTAAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATT
*
45994941 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTTAAAATTCAAGATCCACCATTAAAGCAC
260 TTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
* * *
45995006 CTTAAGCTTTTGAAAAAGATGACATTAATAAAAAATCATGCAATTATCACTCGAATCATGTAAAT
325 CTTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAAT
45995071 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCTTTCTAAATCCT
390 ATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCTTTCTAAATCCT
* *
45995136 TTAATTGAAAATCTTGATTCAAGAATCCTAAGAAATTTCT
455 TTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
45995176 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
45995241 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATTCATGCAATTATCACTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAA-TCATGCAATTATCACTC
45995306 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGAA-
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTT-AAT
* * * * *
45995370 TCTTTCTAAATCCTTTAATTGAAAATCTTGATTCAAGAATCCTAAGAAATTTCTAATAGATTCAT
194 TCGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCAT
* * *
45995435 TTTGAGTTGGAACATCCATTGAGTTGTAGATTTCTTCTCAAAATTCAAGATCCACCATTAAAGCA
259 TTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCA
45995500 CCTTAAGATTTTGAAGAAGATGACATTAATAAAAAAATCATGCAATTATCACTCAAATCATGTAA
324 CCTTAAGATTTTGAAGAAGATGACATTAAT-AAAAAATCATGCAATTATCACTCAAATCATGTAA
45995565 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCTTTCTAAATC
388 ATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCTTTCTAAATC
*
45995630 CTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCT
453 CTTTGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
*
45995672 AATAGATCCATTTTGAGTTGGAACATCCACTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
1 AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
* *
45995737 CCATTAAAACACCTTAAGCTTTTGAAGAATATGACATTAATAAAAAAATCATGCAATTATCACTC
66 CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAAT-AAAAAATCATGCAATTATCACTC
* * *
45995802 AAATCATGTAAATATGCTTCTAATCAGCATAAAAATAAGTTTAGAAATAATAATTACATTTTATT
130 AAATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATT
* *
45995867 CGTTCTAAATTCTTTGATTGGAAATCTTGATTCAAGAATCTTGAGAAATTT
195 CGTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTT
45995918 TAGAATATTT
Statistics
Matches: 1175, Mismatches: 53, Indels: 15
0.95 0.04 0.01
Matches are distributed among these distances:
493 60 0.05
494 63 0.05
495 665 0.57
496 381 0.32
497 6 0.01
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (494 bp):
AATAGATCCATTTTGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA
CCATTAAAGCACCTTAAGCTTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCA
AATCATGTAAATATGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTAATTC
GTTCTAAATCCTTTGATTGAAAATCTTGATTCAAGAATCTTGAGAAATTTCTAATAGATCCATTT
TGAGTTGGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACC
TTAAGATTTTGAAGAAGATGACATTAATAAAAAATCATGCAATTATCACTCAAATCATGTAAATA
TGCTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACCTTTGATTCTTTCTAAATCCTT
TGATTGAAAATCTTGATTCAAGAATCTTAAGAAATTTCT
Found at i:45996650 original size:22 final size:20
Alignment explanation
Indices: 45996622--45996674 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
45996612 ACACACCGTG
*
45996622 TGTTGAGCCATAGCAACTCCTA
1 TGTTGAGCCATAG-AA-GCCTA
* *
45996644 TGTTGAGCCTTAGTAGCCTA
1 TGTTGAGCCATAGAAGCCTA
45996664 TGTTGAGCCAT
1 TGTTGAGCCAT
45996675 GGCCTGAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 14 0.52
21 1 0.04
22 12 0.44
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (20 bp):
TGTTGAGCCATAGAAGCCTA
Found at i:45998883 original size:20 final size:21
Alignment explanation
Indices: 45998858--45998896 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
45998848 GTTATTTGAT
*
45998858 CCATTAAATTG-ATTTTTTAG
1 CCATTAAATCGCATTTTTTAG
45998878 CCATTAAATCGCATTTTTT
1 CCATTAAATCGCATTTTTT
45998897 TAAATAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (21 bp):
CCATTAAATCGCATTTTTTAG
Found at i:46000400 original size:41 final size:41
Alignment explanation
Indices: 46000355--46000437 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
46000345 AATTAAATGT
*
46000355 TAAATTAGTAAAAAGCAAAAAAGAAAGTGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
46000396 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
1 TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
46000437 T
1 T
46000438 TTTAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (41 bp):
TAAATTAGTAAAAAGCAAAAAAGAAAGCGTCATCTCTTTCA
Found at i:46005971 original size:17 final size:17
Alignment explanation
Indices: 46005945--46005982 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
46005935 AATATATTGT
*
46005945 ATATTTAACACAAATAA
1 ATATTCAACACAAATAA
46005962 ATATTCAACACAAATAA
1 ATATTCAACACAAATAA
46005979 ATAT
1 ATAT
46005983 CAAATTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (17 bp):
ATATTCAACACAAATAA
Found at i:46006667 original size:36 final size:36
Alignment explanation
Indices: 46006627--46006697 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
46006617 ATCAAAGGCT
*
46006627 ACAATTAAAAGTTGTATACAATTAGCACTCTAAGAC
1 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
* * *
46006663 ACAATTAGAAGTTGTATACGATTAGAATTCTAAGA
1 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGA
46006698 TTACATAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.30
Consensus pattern (36 bp):
ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
Found at i:46006970 original size:24 final size:24
Alignment explanation
Indices: 46006943--46006989 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
46006933 TACTCATACA
* *
46006943 TTGCTTTGTTCCATCATCTCAACT
1 TTGCCTTGCTCCATCATCTCAACT
* *
46006967 TTGCCTTGCTCTATCATTTCAAC
1 TTGCCTTGCTCCATCATCTCAAC
46006990 CATTTCAACT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.09, T:0.45
Consensus pattern (24 bp):
TTGCCTTGCTCCATCATCTCAACT
Found at i:46007618 original size:20 final size:20
Alignment explanation
Indices: 46007556--46007618 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
46007546 CTTGGAAACT
46007556 GAAAATTAGTTAATTACAGG
1 GAAAATTAGTTAATTACAGG
* * * *
46007576 GAAAA--A-CTATAGTCCAAG
1 GAAAATTAGTTA-ATTACAGG
46007594 GAAAATTAGTTAATTACAGG
1 GAAAATTAGTTAATTACAGG
46007614 GAAAA
1 GAAAA
46007619 ACTATAGAGG
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
17 2 0.06
18 11 0.35
20 16 0.52
21 2 0.06
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (20 bp):
GAAAATTAGTTAATTACAGG
Found at i:46016889 original size:17 final size:17
Alignment explanation
Indices: 46016867--46016998 Score: 62
Period size: 17 Copynumber: 7.8 Consensus size: 17
46016857 AGAGCTCGCA
*
46016867 GGTGAGCTCTCA-TGCTT
1 GGTGAGCTCGCAGTG-TT
46016884 GGTGAGCTCGCAGTGTT
1 GGTGAGCTCGCAGTGTT
46016901 GGTGAGCT---A-T-TCT
1 GGTGAGCTCGCAGTGT-T
**
46016914 GGTGAGCTCGCAGTTCGCA
1 GGTGAGCTCGCAG-T-GTT
* *
46016933 GGTGAGCTCACAGTCTT
1 GGTGAGCTCGCAGTGTT
* * *
46016950 GGTGAGCTTGCATCTTTT
1 GGTGAGCTCGCA-GTGTT
* * *
46016968 AGTGAGCTTGCACAT-TT
1 GGTGAGCTCGCA-GTGTT
46016985 GGTGAGCTCGCAGT
1 GGTGAGCTCGCAGT
46016999 TCACAGTTAG
Statistics
Matches: 88, Mismatches: 17, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
12 1 0.01
13 10 0.11
14 1 0.01
16 2 0.02
17 43 0.49
18 19 0.22
19 12 0.14
ACGTcount: A:0.15, C:0.20, G:0.33, T:0.32
Consensus pattern (17 bp):
GGTGAGCTCGCAGTGTT
Found at i:46017033 original size:17 final size:17
Alignment explanation
Indices: 46017011--46017096 Score: 91
Period size: 17 Copynumber: 4.7 Consensus size: 17
46017001 ACAGTTAGCA
*
46017011 GGTGAGCTCGCACTCTT
1 GGTGAGCTCGCACTTTT
*
46017028 GGTGAGCTCGCTTCTTTT
1 GGTGAGCTCGC-ACTTTT
46017046 GGTGAGCGAGCTCGCATCTTTT
1 GGT----GAGCTCGCA-CTTTT
*
46017068 GGTGAGCTCGCACATTT
1 GGTGAGCTCGCACTTTT
46017085 GGTGAGCTCGCA
1 GGTGAGCTCGCA
46017097 GTTCACAGTT
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
17 27 0.46
18 16 0.27
22 16 0.27
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.31
Consensus pattern (17 bp):
GGTGAGCTCGCACTTTT
Found at i:46017059 original size:22 final size:22
Alignment explanation
Indices: 46017031--46017074 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
46017021 CACTCTTGGT
*
46017031 GAGCTCGCTTCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
46017053 GAGCTCGCATCTTTTGGTGAGC
1 GAGCTCGCATCTTTTGGTGAGC
46017075 TCGCACATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.32, T:0.34
Consensus pattern (22 bp):
GAGCTCGCATCTTTTGGTGAGC
Found at i:46019591 original size:13 final size:13
Alignment explanation
Indices: 46019573--46019599 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46019563 ACACATTTTC
46019573 TTTTTCATTGCAT
1 TTTTTCATTGCAT
46019586 TTTTTCATTGCAT
1 TTTTTCATTGCAT
46019599 T
1 T
46019600 GGGGAATGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTTTCATTGCAT
Found at i:46020009 original size:26 final size:26
Alignment explanation
Indices: 46019957--46020009 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
46019947 ATTTTAATAA
*
46019957 TTTTTAATTTAAAAAAAGTTATAAAT
1 TTTTTAATTTAAAAAAAGTAATAAAT
*
46019983 TTTTTGAATTTAAAAAAA-TAATTAAT
1 TTTTT-AATTTAAAAAAAGTAATAAAT
46020009 T
1 T
46020010 GCTAACGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (26 bp):
TTTTTAATTTAAAAAAAGTAATAAAT
Found at i:46028620 original size:40 final size:40
Alignment explanation
Indices: 46028561--46028725 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
46028551 ATAAAAAAAT
* * * *
46028561 GCCGCTATAGATTGTGCATTAGCAGCGCTTTTTGAAAGAC
1 GCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAGAC
* * *
46028601 GCCGCTATAGATCAAGCATTAGCGACGCTTTTTGAAAA-AT
1 GCCGCTATAGATCGAGCATTAGCGGCGCTTTTT-AAAAGAC
*
46028641 GCCGCTATAGATCGAGCATTAGCGGCG-TTTTTCAAAAGGC
1 GCCGCTATAGATCGAGCATTAGCGGCGCTTTTT-AAAAGAC
* *
46028681 GCCGCTGTAGGTCGAGCATTAGCGGCGCTTCTTTAAAAG-C
1 GCCGCTATAGATCGAGCATTAGCGGCGCTT-TTTAAAAGAC
46028721 GCCGC
1 GCCGC
46028726 AAAAAAATTA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 9 0.08
40 85 0.79
41 10 0.09
42 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAGAC
Found at i:46028699 original size:80 final size:80
Alignment explanation
Indices: 46028555--46028718 Score: 215
Period size: 80 Copynumber: 2.0 Consensus size: 80
46028545 GTTTGAATAA
* * *
46028555 AAAAATGCCGCTATAGATTGTGCATTAGCAGCGCTTTTTGAAAGACGCCGCTATAGATCAAGCAT
1 AAAAATGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTAAAAGACGCCGCTATAGATCAAGCAT
46028620 TAGCGACGCTT-TTT
66 TAGCGACGCTTCTTT
* * * * *
46028634 GAAAAATGCCGCTATAGATCGAGCATTAGCGGCG-TTTTTCAAAAGGCGCCGCTGTAGGTCGAGC
1 -AAAAATGCCGCTATAGATCGAGCATTAGCAGCGCTTTTT-AAAAGACGCCGCTATAGATCAAGC
*
46028698 ATTAGCGGCGCTTCTTT
64 ATTAGCGACGCTTCTTT
46028715 AAAA
1 AAAA
46028719 GCGCCGCAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 5 0.07
80 65 0.89
81 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (80 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTAAAAGACGCCGCTATAGATCAAGCAT
TAGCGACGCTTCTTT
Found at i:46028956 original size:142 final size:139
Alignment explanation
Indices: 46028701--46028981 Score: 447
Period size: 142 Copynumber: 2.0 Consensus size: 139
46028691 GTCGAGCATT
*
46028701 AGCGGCGCTTCTTTAAAAGCGCCGCAAAAAAATTAAGCACAACGCCATTTTATGTTGAGCTTTGG
1 AGCGGCGCTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCATTTTATGTTGAGCTTTGG
* *
46028766 TGGCATTAGCGGCGCTTCTTAGAAAACGCCGCTATAGATCAAGTATTAGTGGCACTTTTTGATAA
66 TGGCATTAGCGGCGCTTCTTAGAAAACGCCACTATAGATCAAGCATTAGTGGCACTTTTTGA-AA
46028831 A-CGCCGCTA
130 ATCGCCGCTA
* *
46028840 AGCGGCGCTTCTTTAAAAATGCCGCAAAAAAATTAAGCACAATGCCATCGTTTTATGTTGAGCTT
1 AGCGGCGCTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCA---TTTTATGTTGAGCTT
* * *
46028905 TGGTGGCATTAGCGGTGCTTTTTAGAAAACGCCACTATAGATCAAGCATTAGTGGCGCTTTTTGA
63 TGGTGGCATTAGCGGCGCTTCTTAGAAAACGCCACTATAGATCAAGCATTAGTGGCACTTTTTGA
46028970 AAATCGCCGCTA
128 AAATCGCCGCTA
46028982 TAGGTCGAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
139 44 0.34
141 3 0.02
142 83 0.64
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (139 bp):
AGCGGCGCTTCTTTAAAAACGCCGCAAAAAAATTAAGCACAACGCCATTTTATGTTGAGCTTTGG
TGGCATTAGCGGCGCTTCTTAGAAAACGCCACTATAGATCAAGCATTAGTGGCACTTTTTGAAAA
TCGCCGCTA
Found at i:46028965 original size:40 final size:40
Alignment explanation
Indices: 46028910--46029013 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
46028900 AGCTTTGGTG
*
46028910 GCATTAGCGGTGCTTTTTAGAAAA-CGCCACTATAGATCAA
1 GCATTAGCGGCGCTTTTT-GAAAATCGCCACTATAGATCAA
* * * *
46028950 GCATTAGTGGCGCTTTTTGAAAATCGCCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAATCGCCACTATAGATCAA
46028990 GCATTAGCGGCGCTTTTTTGAAAA
1 GCATTAGCGGCGC-TTTTTGAAAA
46029014 ACACCGCAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.09
40 41 0.73
41 10 0.18
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAATCGCCACTATAGATCAA
Found at i:46029334 original size:7 final size:7
Alignment explanation
Indices: 46029319--46029379 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
46029309 ATCATTATAA
*
46029319 TTTAGGG
1 TTTATGG
46029326 TTTATGG
1 TTTATGG
46029333 TTTATGG
1 TTTATGG
*
46029340 ATTATGTG
1 TTTATG-G
*
46029348 TTTAGGG
1 TTTATGG
*
46029355 ATTATGG
1 TTTATGG
*
46029362 ATTATGG
1 TTTATGG
*
46029369 ATTATGG
1 TTTATGG
46029376 TTTA
1 TTTA
46029380 AGGGTTGGGG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
7 41 0.89
8 5 0.11
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
TTTATGG
Done.