Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 151 of 222
Found at i:48754387 original size:20 final size:20
Alignment explanation
Indices: 48754362--48754402 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
48754352 ATCGGCCATT
48754362 AGGCCTTATCACATATATAC
1 AGGCCTTATCACATATATAC
48754382 AGGCCTTATCACATATATAC
1 AGGCCTTATCACATATATAC
48754402 A
1 A
48754403 CTTTCACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (20 bp):
AGGCCTTATCACATATATAC
Found at i:48754393 original size:67 final size:67
Alignment explanation
Indices: 48754318--48754449 Score: 255
Period size: 67 Copynumber: 2.0 Consensus size: 67
48754308 GGCCATTCGA
48754318 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
48754383 GG
66 GG
*
48754385 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
48754450 CTTTCACATT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.33
Consensus pattern (67 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
GG
Found at i:48756224 original size:23 final size:23
Alignment explanation
Indices: 48756193--48756238 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
48756183 AGCATTTGGA
48756193 CAACATTTCAACTTTAAAT-TTTC
1 CAACATTTC-ACTTTAAATATTTC
* *
48756216 CAACCTTTCACTTTCAATATTTC
1 CAACATTTCACTTTAAATATTTC
48756239 GAATATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.43
Consensus pattern (23 bp):
CAACATTTCACTTTAAATATTTC
Found at i:48760436 original size:12 final size:11
Alignment explanation
Indices: 48760408--48760437 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
48760398 AAATTTTTTT
48760408 TATTTTTAAAA
1 TATTTTTAAAA
48760419 TATTTTTAAAA
1 TATTTTTAAAA
48760430 TACTTTTT
1 TA-TTTTT
48760438 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:48760773 original size:21 final size:20
Alignment explanation
Indices: 48760722--48760774 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
48760712 TGTGTAATTA
* * *
48760722 AATTGTATTTATATGTTTTT
1 AATTGTATATATATGTTATG
*
48760742 AATTGAAATATATATGTTATG
1 AATTG-TATATATATGTTATG
48760763 AATTGTCATATA
1 AATTGT-ATATA
48760775 AAATTACCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (20 bp):
AATTGTATATATATGTTATG
Found at i:48760980 original size:25 final size:25
Alignment explanation
Indices: 48760941--48761099 Score: 112
Period size: 25 Copynumber: 6.3 Consensus size: 25
48760931 CGGATACTCC
* * *
48760941 ACAGCTCGTGTGAGCATA-TCGATTT
1 ACAGCTCGAGAGAGCATACT-GATCT
*
48760966 ATAGCTCGAGAGAGCATAACTGATCT
1 ACAGCTCGAGAGAGCAT-ACTGATCT
*
48760992 GCAGCTCGAGTA-AGCATACTGATCT
1 ACAGCTCGAG-AGAGCATACTGATCT
* * *
48761017 AGAGATCGAGTA-AGCATA-TAGATTT
1 ACAGCTCGAG-AGAGCATACT-GATCT
* * *
48761042 ATAGCTCGGGAGAGTATACTGATCT
1 ACAGCTCGAGAGAGCATACTGATCT
* *
48761067 ACAGCTCGAGTGAGCATACCGAT-T
1 ACAGCTCGAGAGAGCATACTGATCT
48761091 CACAGCTCG
1 -ACAGCTCG
48761100 TATGAGTATA
Statistics
Matches: 107, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
24 3 0.03
25 83 0.78
26 19 0.18
27 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (25 bp):
ACAGCTCGAGAGAGCATACTGATCT
Found at i:48765830 original size:21 final size:21
Alignment explanation
Indices: 48765769--48765830 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
48765759 CTTTCTGTTT
* * *
48765769 AGCTTTTTCGAGCTTCTGTTT
1 AGCTCTTTCGAGCTTCCGTTC
* * * * *
48765790 AACTCATACGAGTTTTCGTTC
1 AGCTCTTTCGAGCTTCCGTTC
48765811 AGCTCTTTCGAGCTTCCGTT
1 AGCTCTTTCGAGCTTCCGTT
48765831 TAACCCTTAT
Statistics
Matches: 28, Mismatches: 13, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (21 bp):
AGCTCTTTCGAGCTTCCGTTC
Found at i:48765852 original size:42 final size:42
Alignment explanation
Indices: 48765760--48765888 Score: 125
Period size: 42 Copynumber: 3.1 Consensus size: 42
48765750 CATGTTTTAC
* * * * * * *
48765760 TTTCTGTTTAGCTTTTTCGAGCTTCTGTTTAACTCATACGAG
1 TTTCCGTTCAGCTATTTCGAGCTTCTGTTTAACCCTTATGGG
* * *
48765802 TTTTCGTTCAGCTCTTTCGAGCTTCCGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTATTTCGAGCTTCTGTTTAACCCTTATGGG
* * *
48765844 TTTCCGTTCTA-CTATTACAAGCTTCTGTTCAACCCTTATGGG
1 TTTCCGTTC-AGCTATTTCGAGCTTCTGTTTAACCCTTATGGG
48765886 TTT
1 TTT
48765889 AGGTCTCATG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 70 0.99
43 1 0.01
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.45
Consensus pattern (42 bp):
TTTCCGTTCAGCTATTTCGAGCTTCTGTTTAACCCTTATGGG
Found at i:48767991 original size:20 final size:20
Alignment explanation
Indices: 48767948--48767989 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
48767938 CAAAGAAAGT
48767948 AAATGCAATGGAAAGTAATG
1 AAATGCAATGGAAAGTAATG
48767968 AAATGCAAAT-GAAAGTAA-G
1 AAATGC-AATGGAAAGTAATG
48767987 AAA
1 AAA
48767990 ATTTGGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.21, T:0.17
Consensus pattern (20 bp):
AAATGCAATGGAAAGTAATG
Found at i:48770858 original size:23 final size:23
Alignment explanation
Indices: 48770800--48770965 Score: 109
Period size: 23 Copynumber: 7.1 Consensus size: 23
48770790 AAAATAGTAA
* * *
48770800 GTATACTTGGTTTTTTTTGGAGG
1 GTATAATTGGTTGTGTTTGGAGG
* *
48770823 TTATATATATGGTTGTGTATGGAGG
1 GTATA-AT-TGGTTGTGTTTGGAGG
* *
48770848 GTATACTTGGTTGGGTTTGGAGG
1 GTATAATTGGTTGTGTTTGGAGG
* ** *
48770871 TTATAAATAAAGTTGTGTTTGAAGG
1 GTAT-AAT-TGGTTGTGTTTGGAGG
48770896 GTATAATTGGTTGTG-TTGGAGG
1 GTATAATTGGTTGTGTTTGGAGG
** * *
48770918 GTATGTTTAGTTGTGTTTGGAAG
1 GTATAATTGGTTGTGTTTGGAGG
* ** * *
48770941 ATATGTTTGGTTATGTTTGGTGG
1 GTATAATTGGTTGTGTTTGGAGG
48770964 GT
1 GT
48770966 GATAGTTTTA
Statistics
Matches: 109, Mismatches: 29, Indels: 10
0.74 0.20 0.07
Matches are distributed among these distances:
22 18 0.17
23 52 0.48
24 7 0.06
25 32 0.29
ACGTcount: A:0.19, C:0.01, G:0.34, T:0.45
Consensus pattern (23 bp):
GTATAATTGGTTGTGTTTGGAGG
Found at i:48770871 original size:48 final size:48
Alignment explanation
Indices: 48770800--48770917 Score: 148
Period size: 48 Copynumber: 2.5 Consensus size: 48
48770790 AAAATAGTAA
* * * ** *
48770800 GTATACTTGGTTTTTTTTGGAGGTTATATATATGGTTGTGTATGGAGG
1 GTATACTTGGTTGTGTTTGGAGGTTATAAATAAAGTTGTGTATGAAGG
* *
48770848 GTATACTTGGTTGGGTTTGGAGGTTATAAATAAAGTTGTGTTTGAAGG
1 GTATACTTGGTTGTGTTTGGAGGTTATAAATAAAGTTGTGTATGAAGG
*
48770896 GTATAATTGGTTGTG-TTGGAGG
1 GTATACTTGGTTGTGTTTGGAGG
48770918 GTATGTTTAG
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 7 0.12
48 53 0.88
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (48 bp):
GTATACTTGGTTGTGTTTGGAGGTTATAAATAAAGTTGTGTATGAAGG
Found at i:48771252 original size:23 final size:22
Alignment explanation
Indices: 48771225--48771278 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
48771215 CCGGCCCATT
** *
48771225 TTTTAATAAACACCAAAAAATTA
1 TTTTAA-AAACAAAAAAAAAGTA
*
48771248 TTTTAAAAATAAAAAAAAAGTA
1 TTTTAAAAACAAAAAAAAAGTA
48771270 TTTTAAAAA
1 TTTTAAAAA
48771279 TATTTTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (22 bp):
TTTTAAAAACAAAAAAAAAGTA
Found at i:48771271 original size:22 final size:22
Alignment explanation
Indices: 48771239--48771280 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
48771229 AATAAACACC
*
48771239 AAAAAATTATTTTAAAAATAAA
1 AAAAAAGTATTTTAAAAATAAA
48771261 AAAAAAGTATTTTAAAAATA
1 AAAAAAGTATTTTAAAAATA
48771281 TTTTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAAAGTATTTTAAAAATAAA
Found at i:48776592 original size:102 final size:102
Alignment explanation
Indices: 48776416--48776655 Score: 363
Period size: 102 Copynumber: 2.4 Consensus size: 102
48776406 AACACCAGAG
* * * *
48776416 AGATAAGATTTGCTGCCTTCAGCTTTAATCTACTCCGCTGCAACGCCAGGGAAACAAGATTCTCT
1 AGATAGGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAACACCAGGGAAACAAGATTCTCT
* * *
48776481 ACCTTTAGCTTTAATCTGTTCCACTGTAATGCCAAGA
66 ACCTTTAGCTTTAATCTATTCCACTATAAGGCCAAGA
* * * *
48776518 AGATAGGATTCGCTGCCTTTAGCTTTAATCTGCTCTGCTATAACACCAGGGAAACAAGATTCTCT
1 AGATAGGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAACACCAGGGAAACAAGATTCTCT
*
48776583 ACCTTTAGCTTTAATCTATTCCACTATAAGGCCAAGG
66 ACCTTTAGCTTTAATCTATTCCACTATAAGGCCAAGA
*
48776620 AGATAGGATTCGCTGCCTTCAGCTTTAATCCACTCC
1 AGATAGGATTCGCTGCCTTCAGCTTTAATCTACTCC
48776656 ACTTCAGCTT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
102 122 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (102 bp):
AGATAGGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAACACCAGGGAAACAAGATTCTCT
ACCTTTAGCTTTAATCTATTCCACTATAAGGCCAAGA
Found at i:48776657 original size:51 final size:51
Alignment explanation
Indices: 48776415--48776658 Score: 218
Period size: 51 Copynumber: 4.8 Consensus size: 51
48776405 TAACACCAGA
* * * ** *
48776415 GAGATAAGATTTGCTGCCTTCAGCTTTAATCTACTCCGCTGCAACGCCAGG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACTATAACGCCAAG
* * * * ** * *
48776466 GAAACAAGATTCTCTACCTTTAGCTTTAATCTGTTCCACTGTAATGCCAAG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACTATAACGCCAAG
* * * ** * *
48776517 AAGATAGGATTCGCTGCCTTTAGCTTTAATCTGCTCTGCTATAACACCAGG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACTATAACGCCAAG
* * * * * *
48776568 GAAACAAGATTCTCTACCTTTAGCTTTAATCTATTCCACTATAAGGCCAAG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACTATAACGCCAAG
* * *
48776619 GAGATAGGATTCGCTGCCTTCAGCTTTAATCCACTCCACT
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACT
48776659 TCAGCTTTAA
Statistics
Matches: 147, Mismatches: 46, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 147 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (51 bp):
GAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCACTATAACGCCAAG
Found at i:48776753 original size:51 final size:50
Alignment explanation
Indices: 48776661--48776822 Score: 189
Period size: 51 Copynumber: 3.2 Consensus size: 50
48776651 ACTCCACTTC
* * * *
48776661 AGCTTTAATCTATTCCAGTGCAACGCCAGGGAAATATGATTCGCTACCTTT
1 AGCTTTAATCTGTTCCACTGCAACGTCA-GGAAATAAGATTCGCTACCTTT
* *
48776712 AGCTTTAATCTGTTCCACTGCAACGTCAGAGAAACAAGATTCTCTACCTTT
1 AGCTTTAATCTGTTCCACTGCAACGTCAG-GAAATAAGATTCGCTACCTTT
* * * * * *
48776763 AGCTTTAATCTGTTCCACTGTAACGCTAAGGAGATAGGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACG-TCAGGAAATAAGATTCGCTACCTTT
48776814 AGCTTTAAT
1 AGCTTTAAT
48776823 TATCTCCACT
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 1 0.01
51 91 0.96
52 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (50 bp):
AGCTTTAATCTGTTCCACTGCAACGTCAGGAAATAAGATTCGCTACCTTT
Found at i:48776781 original size:174 final size:174
Alignment explanation
Indices: 48776487--48776927 Score: 591
Period size: 174 Copynumber: 2.5 Consensus size: 174
48776477 CTCTACCTTT
* * * * * * * *
48776487 AGCTTTAATCTGTTCCACTGTAATGCCA-AGAAGATAGGATTCGCTGCCTTTAGCTTTAATCTGC
1 AGCTTTAATCTATTCCAGTGCAACGCCAGGGAA-ATAAGATTCGCTACCTTTAGCTTTAATCTGT
** ** * * *
48776551 TCTGCTATAACACCAGGGAAACAAGATTCTCTACCTTTAGCTTTAATCTATTCCACTATAAGGCC
65 TCCACTGCAACGCCAGAGAAACAAGATTCTCTACCTTTAGCTTTAATCTATTCCACTATAACGCC
48776616 AAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCCA-CTCCACTTC
130 AAGGAGATAGGATTCGCTGCCTTCAGCTTTAAT-CATCTCCACTTC
*
48776661 AGCTTTAATCTATTCCAGTGCAACGCCAGGGAAATATGATTCGCTACCTTTAGCTTTAATCTGTT
1 AGCTTTAATCTATTCCAGTGCAACGCCAGGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTT
* * * *
48776726 CCACTGCAACGTCAGAGAAACAAGATTCTCTACCTTTAGCTTTAATCTGTTCCACTGTAACGCTA
66 CCACTGCAACGCCAGAGAAACAAGATTCTCTACCTTTAGCTTTAATCTATTCCACTATAACGCCA
*
48776791 AGGAGATAGGATTCGCTGCCTTCAGCTTTAATTATCTCCACTTC
131 AGGAGATAGGATTCGCTGCCTTCAGCTTTAATCATCTCCACTTC
* * * *
48776835 AGCTTTCATCTATTCTAGTGCAACGCTAGGGAAATAAGATTCGCTATCTTTAGCTTTAATCTGTT
1 AGCTTTAATCTATTCCAGTGCAACGCCAGGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTT
* *
48776900 CCA-TGGCAATGCCAGAGAAAAAAGATTC
66 CCACT-GCAACGCCAGAGAAACAAGATTC
48776928 GCTGCCTACA
Statistics
Matches: 236, Mismatches: 28, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
173 2 0.01
174 231 0.98
175 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (174 bp):
AGCTTTAATCTATTCCAGTGCAACGCCAGGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTT
CCACTGCAACGCCAGAGAAACAAGATTCTCTACCTTTAGCTTTAATCTATTCCACTATAACGCCA
AGGAGATAGGATTCGCTGCCTTCAGCTTTAATCATCTCCACTTC
Found at i:48778376 original size:46 final size:44
Alignment explanation
Indices: 48778303--48778437 Score: 164
Period size: 44 Copynumber: 3.0 Consensus size: 44
48778293 TTTTATATTA
*
48778303 TTTTTTATG-ACTCAAAGCACCCTTTTGCGGGTTTTCACCTTGGTC
1 TTTTTTA-GAACTCAAAGCGCCC-TTTGCGGGTTTTCACCTTGGTC
* * *
48778348 TTTTTTTAAGAACTTAAGGCGCCCTTTGCGGGTTTTCACCTTAGTC
1 -TTTTTT-AGAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
** *
48778394 TTTTTTAGAACTCAAAGCGCCCTTTGCAAGTTTTCGCCTTGGTC
1 TTTTTTAGAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
48778438 CCTTCTCTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
44 32 0.42
45 6 0.08
46 28 0.36
47 11 0.14
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.41
Consensus pattern (44 bp):
TTTTTTAGAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
Found at i:48778428 original size:44 final size:45
Alignment explanation
Indices: 48778303--48778420 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 45
48778293 TTTTATATTA
* *
48778303 TTTTTTATG-ACTCAAAGCACCCTTTTGCGGGTTTTCACCTTGGTCT
1 TTTTTTA-GAACTCAAAGCGCCC-TTTGCGGGTTTTCACCTTAGTCT
* *
48778349 TTTTTTAAGAACTTAAGGCGCCCTTTGCGGGTTTTCACCTTAGTC-
1 TTTTTT-AGAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTAGTCT
48778394 TTTTTTAGAACTCAAAGCGCCCTTTGC
1 TTTTTTAGAACTCAAAGCGCCCTTTGC
48778421 AAGTTTTCGC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 19 0.30
45 6 0.09
46 28 0.44
47 11 0.17
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.41
Consensus pattern (45 bp):
TTTTTTAGAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTAGTCT
Found at i:48779365 original size:22 final size:23
Alignment explanation
Indices: 48779340--48779398 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
48779330 TCTCCTATTT
48779340 TTTTCCTTTTCCTTTTCTTC-TC-
1 TTTTCCTTTT-CTTTTCTTCATCA
* *
48779362 TTTTTCTTTTCTTTTTTTCATCA
1 TTTTCCTTTTCTTTTCTTCATCA
*
48779385 TTTTCATTTT-TTTT
1 TTTTCCTTTTCTTTT
48779399 GAAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 8 0.26
22 15 0.48
23 8 0.26
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTCCTTTTCTTTTCTTCATCA
Found at i:48782931 original size:16 final size:16
Alignment explanation
Indices: 48782912--48782946 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
48782902 TTTTATAATG
*
48782912 AAATGCCATGCAGTCA
1 AAATGCCATGCAATCA
48782928 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
48782944 AAA
1 AAA
48782947 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.23, G:0.14, T:0.17
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:48792550 original size:79 final size:82
Alignment explanation
Indices: 48792439--48792623 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48792429 GCTACTCGTT
* * *
48792439 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48792502 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48792519 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48792582 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48792599 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48792624 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48792623 original size:40 final size:40
Alignment explanation
Indices: 48792420--48792623 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48792410 CGGAATTTAA
** *
48792420 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48792460 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48792500 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48792539 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48792579 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48792619 CCGGA
1 CCGGA
48792624 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48800592 original size:79 final size:82
Alignment explanation
Indices: 48800481--48800665 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48800471 GCTACTCGTT
* * *
48800481 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48800544 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48800561 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48800624 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48800641 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48800666 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48800665 original size:40 final size:40
Alignment explanation
Indices: 48800462--48800665 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48800452 CGGAATTTAA
** *
48800462 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48800502 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48800542 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48800581 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48800621 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48800661 CCGGA
1 CCGGA
48800666 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48816956 original size:79 final size:82
Alignment explanation
Indices: 48816845--48817029 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48816835 GCTACTCGTT
* * *
48816845 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48816908 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48816925 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48816988 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48817005 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48817030 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48817029 original size:40 final size:40
Alignment explanation
Indices: 48816826--48817029 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48816816 CGGAATTTAA
** *
48816826 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48816866 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48816906 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48816945 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48816985 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48817025 CCGGA
1 CCGGA
48817030 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48824997 original size:79 final size:80
Alignment explanation
Indices: 48824896--48825080 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
48824886 GCTACTCGTT
* *
48824896 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTA-A-TAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48824959 GAATTTAGTAAC-TCGCA
63 GAATATAGTAACTTAGCA
* ** *
48824976 CAAATGCCTTCGGG-CTTAGCCCGGAATTAATATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGA
* *
48825040 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
48825056 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48825081 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 51 0.57
80 33 0.37
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGAA
TATAGTAACTTAGCA
Found at i:48825080 original size:40 final size:40
Alignment explanation
Indices: 48824877--48825080 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
48824867 CGGAATTTAA
** *
48824877 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48824917 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48824957 CCGAATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48824996 CCGGA-ATTAATATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48825036 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48825076 CCGGA
1 CCGGA
48825081 CATCATTCAA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 90 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48827019 original size:6 final size:7
Alignment explanation
Indices: 48827000--48827050 Score: 70
Period size: 7 Copynumber: 7.3 Consensus size: 7
48826990 CAAAAAATTG
48827000 TGAAAAA
1 TGAAAAA
48827007 TGAAAAAA
1 TG-AAAAA
48827015 T-AAAAA
1 TGAAAAA
48827021 TGAAAAA
1 TGAAAAA
48827028 TGAAAAA
1 TGAAAAA
48827035 TGAAAAA
1 TGAAAAA
48827042 -GCAAAAA
1 TG-AAAAA
48827049 TG
1 TG
48827051 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 7 0.17
7 26 0.65
8 7 0.17
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.14
Consensus pattern (7 bp):
TGAAAAA
Found at i:48828438 original size:50 final size:49
Alignment explanation
Indices: 48828363--48829038 Score: 429
Period size: 50 Copynumber: 13.5 Consensus size: 49
48828353 GCAATGGAAC
* * * *
48828363 AGATTAAAGCCACATCGGTGAATCTTGCCTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * * * * * ** *
48828413 AGATTAAAGCTACAACAGTGAATCTTACTCCCTAGGCAATGCAATGGAAT
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCC-CGACATTGCAGTTAAAA
* * * *
48828463 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * * * * ** * ** *
48828513 AGATTAAAGCTACAATAGCAAATGTTACTCCCCAAGCGGTGCAATGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCCCGA-CATTGCAGTTAAAA
** *
48828563 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * * ** *
48828613 AGATTAAAGCTACAACAGCGAATCTTACTCCCTAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCC-CGAC-ATTGCAGTTAAAA
* * * *
48828663 AGATTAAAGCCACATCGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * ** ** *
48828713 AGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCGGTGCAGTGGAAT
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCCCGA-CATTGCAGTTAAAA
** * *
48828763 AGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * * * *
48828813 AGATTAAAGCTACAACAGCGAATCTTACTCCCCAAGCAGTGCAGTGGAACA
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCCCGA-CATTGCAGT-TAAAA
** * *
48828864 A-ATTAAAGCCACAATGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
* * * *** ** ** *
48828913 AGATTAAAGCTACAACAGCGAATCTTACTTCTTAAGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTCCTCCCCGA-CATTGCAGTTAAAA
* ** * * * * *
48828963 AGATTAACGCCACAATGGTGAATCTTACTTCCCCAATATTGCAGTTAGAA
1 AGATTAAAGCCACAACAGCGAATCTT-CCTCCCCGACATTGCAGTTAAAA
*
48829013 AGATTAAAGCTACAACAGCGAATCTT
1 AGATTAAAGCCACAACAGCGAATCTT
48829039 ACTTCCCAGG
Statistics
Matches: 455, Mismatches: 155, Indels: 32
0.71 0.24 0.05
Matches are distributed among these distances:
49 35 0.08
50 385 0.85
51 35 0.08
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (49 bp):
AGATTAAAGCCACAACAGCGAATCTTCCTCCCCGACATTGCAGTTAAAA
Found at i:48828510 original size:100 final size:100
Alignment explanation
Indices: 48828337--48829121 Score: 1072
Period size: 100 Copynumber: 7.8 Consensus size: 100
48828327 AATACCAGTT
* * * * * *
48828337 TTACTTCCCAGGCGATGCAATGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCCTCCCCGACA
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAAT-GGCGAATCTTGCTTCCCCGACA
* *
48828401 TTGTAGTTAAAAAGATTAAAGCTACAACAGTGAATC
65 TTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * ** * * *
48828437 TTACTCCCTAGGCAATGCAATGGAATAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACA
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAAT-GGCGAATCTTGCTTCCCCGACA
* * *
48828501 TTGCAGTTAAAAAGATTAAAGCTACAATAGCAAATG
65 TTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
*
48828537 TTACTCCCCAAGCGGTGCAATGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
48828602 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * * *
48828637 TTACTCCCTAGGCGATGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTACTTCCCCGACA
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAAT-GGCGAATCTTGCTTCCCCGACA
48828701 TTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
65 TTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
*
48828737 TTACTCCCCAAGCGGTGCAGTGGAATAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
*
48828802 TGTAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * *
48828837 TTACTCCCCAAGCAGTGCAGTGGAACAAATTAAAGCCACAATGGCGAACCTTGCTTCCCCGACAT
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
48828902 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* ** * * * * *
48828937 TTACTTCTTAAGCGGTGCAGTGGAACAGATTAACGCCACAATGGTGAATCTTACTTCCCCAATAT
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
*
48829002 TGCAGTTAGAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * * * * ** *
48829037 TTACTTCCCAGGCGGTGTAGTGGAACAAATTGAAGCTACAACAGCGAATCTTGCTTCCTCGACAT
1 TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
** *
48829102 CACAGTTAAACAGATTAAAG
66 TGCAGTTAAAAAGATTAAAG
48829122 TTACGAGTTA
Statistics
Matches: 614, Mismatches: 68, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
99 2 0.00
100 608 0.99
101 4 0.01
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (100 bp):
TTACTCCCCAAGCGGTGCAGTGGAACAGATTAAAGCCACAATGGCGAATCTTGCTTCCCCGACAT
TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
Found at i:48829448 original size:26 final size:26
Alignment explanation
Indices: 48829419--48829490 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
48829409 AGCTTTTACA
*
48829419 AACCCAATTAACCTAGCCCAAAATCT
1 AACCCAATTAACCTAGCCCAAAACCT
*
48829445 AACCCAATTAACCAAGCCC-AAACCT
1 AACCCAATTAACCTAGCCCAAAACCT
48829470 AAGCCCAA-TAACCTAGCCCAA
1 AA-CCCAATTAACCTAGCCCAA
48829491 CTGGCCTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 17 0.41
26 24 0.59
ACGTcount: A:0.43, C:0.38, G:0.06, T:0.14
Consensus pattern (26 bp):
AACCCAATTAACCTAGCCCAAAACCT
Found at i:48829702 original size:13 final size:13
Alignment explanation
Indices: 48829684--48829708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48829674 AACATATTGT
48829684 ATTTTTATTTTAG
1 ATTTTTATTTTAG
48829697 ATTTTTATTTTA
1 ATTTTTATTTTA
48829709 TTTTCCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
ATTTTTATTTTAG
Found at i:48830812 original size:4 final size:4
Alignment explanation
Indices: 48830803--48830829 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
48830793 TTTTCATCAT
48830803 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
48830830 ATCCATTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:48832283 original size:3 final size:3
Alignment explanation
Indices: 48832275--48832325 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
48832265 ATAAGTAAAT
* * *
48832275 ATA ATA ATA ATA GTA ATA ATA ATA ATA GTA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
48832323 ATA
1 ATA
48832326 CAAAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:48832325 original size:15 final size:15
Alignment explanation
Indices: 48832275--48832316 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
48832265 ATAAGTAAAT
48832275 ATAATAATAATAGTA
1 ATAATAATAATAGTA
48832290 ATAATAATAATAGTA
1 ATAATAATAATAGTA
48832305 ATAATAATAATA
1 ATAATAATAATA
48832317 ACAATAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:48832368 original size:21 final size:23
Alignment explanation
Indices: 48832331--48832378 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
48832321 TAATACAAAG
48832331 ATAATGGTATAATATAA-T-AAT
1 ATAATGGTATAATATAAGTAAAT
*
48832352 ATAATGGTAATGA-ATAAGTAAAT
1 ATAATGGT-ATAATATAAGTAAAT
48832375 ATAA
1 ATAA
48832379 AAAGAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 12 0.52
22 4 0.17
23 7 0.30
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.33
Consensus pattern (23 bp):
ATAATGGTATAATATAAGTAAAT
Found at i:48838400 original size:22 final size:21
Alignment explanation
Indices: 48838375--48838427 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
48838365 GAAATTGGTT
48838375 ATATATATTGCACTTAT-ATATA
1 ATATATATTG--CTTATAATATA
48838397 ATATAT-TGTGCTTATAGATATA
1 ATATATAT-TGCTTATA-ATATA
48838419 ATATATATT
1 ATATATATT
48838428 ATTAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 5 0.19
21 1 0.04
22 20 0.74
23 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (21 bp):
ATATATATTGCTTATAATATA
Found at i:48838402 original size:20 final size:21
Alignment explanation
Indices: 48838377--48838424 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
48838367 AATTGGTTAT
48838377 ATATATTGCACTTAT-ATATA
1 ATATATTGCACTTATAATATA
**
48838397 ATATATTGTGCTTATAGATATA
1 ATATATTGCACTTATA-ATATA
48838419 ATATAT
1 ATATAT
48838425 ATTATTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
22 11 0.46
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (21 bp):
ATATATTGCACTTATAATATA
Found at i:48840296 original size:18 final size:18
Alignment explanation
Indices: 48840275--48840309 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
48840265 TAAGGGATAG
48840275 AAATAAATTAAT-AAAAAT
1 AAATAAA-TAATGAAAAAT
48840293 AAATAAATAATGAAAAA
1 AAATAAATAATGAAAAA
48840310 AAACAAACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAATAAATAATGAAAAAT
Found at i:48846469 original size:39 final size:38
Alignment explanation
Indices: 48846407--48846494 Score: 131
Period size: 39 Copynumber: 2.3 Consensus size: 38
48846397 CGTTTAAGGT
* *
48846407 AAGTATGCATATTCGGTGAATATAAAATATTTGTGCAA
1 AAGTATGGATATTCGGCGAATATAAAATATTTGTGCAA
*
48846445 AAGTGATGGATATTTGGCGAATATAAAATATTTGTGCAA
1 AAGT-ATGGATATTCGGCGAATATAAAATATTTGTGCAA
48846484 AAGTAATGGAT
1 AAGT-ATGGAT
48846495 GCTTGTCGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
38 4 0.09
39 41 0.91
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.33
Consensus pattern (38 bp):
AAGTATGGATATTCGGCGAATATAAAATATTTGTGCAA
Found at i:48847958 original size:132 final size:132
Alignment explanation
Indices: 48847718--48847978 Score: 450
Period size: 132 Copynumber: 2.0 Consensus size: 132
48847708 AATAATAGCC
* * *
48847718 ACAATAACTGCAACACTCTTTTCAACCACAACCTGAAATGGTTCGTCCGACTCAACTTGCTTCAC
1 ACAATAACTGCAACACCCTTTTCAACCACAACCTGAAATGGTTCGCCCGACTCAACCTGCTTCAC
*
48847783 CTGTGCCTACTACGACTCCCCATAAGGTTGATCCTATTCGAGAAATTCAAAAAAGAGGTGTCAAG
66 CTGTGCCTACTACGACTCCCCATAAGGTTGATCCTATTCGAGAAATTCAAAAAAGAGGCGTCAAG
48847848 GA
131 GA
*
48847850 ACAATAACTGCAACACCCTTTTCAACCACAACCTGAAGTGGTTCGCCCGACTCAACCTGCTTCAC
1 ACAATAACTGCAACACCCTTTTCAACCACAACCTGAAATGGTTCGCCCGACTCAACCTGCTTCAC
* * *
48847915 TTGTGCCTACTATGACTCCCCATAAGGTTGATCCTATTTGAGAAATTCAAAAAAGAGGCGTCAA
66 CTGTGCCTACTACGACTCCCCATAAGGTTGATCCTATTCGAGAAATTCAAAAAAGAGGCGTCAA
48847979 AGAATTCATT
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 121 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (132 bp):
ACAATAACTGCAACACCCTTTTCAACCACAACCTGAAATGGTTCGCCCGACTCAACCTGCTTCAC
CTGTGCCTACTACGACTCCCCATAAGGTTGATCCTATTCGAGAAATTCAAAAAAGAGGCGTCAAG
GA
Found at i:48852313 original size:41 final size:39
Alignment explanation
Indices: 48852268--48852398 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 39
48852258 CGATTTCGAG
48852268 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAATTTA-TACTTCGGATT-AT
* * * * *
48852309 TCGATGAGGCACTGGGTGCCAA-TT-TACGTCGGTTTAG
1 TCGATGAGACACTGGGTGTCAATTTATACTTCGGATTAT
* *
48852346 TCGATGAGACACTGGGAGTCAATTTATTACTTCGAATTAT
1 TCGATGAGACACTGGGTGTCAATTTA-TACTTCGGATTAT
* *
48852386 TTGATGAGGCACT
1 TCGATGAGACACT
48852399 CAAACTGGTG
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 20 0.27
38 11 0.15
40 22 0.30
41 20 0.27
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAATTTATACTTCGGATTAT
Found at i:48852359 original size:37 final size:38
Alignment explanation
Indices: 48852266--48852371 Score: 124
Period size: 37 Copynumber: 2.7 Consensus size: 38
48852256 TTCGATTTCG
*
48852266 AGTCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTA
1 AGTCGATGAGACACTGGGTGTCAA-TT--TACGTCGGATTA
* * * *
48852307 ATTCGATGAGGCACTGGGTGCCAATTTACGTCGG-TTT
1 AGTCGATGAGACACTGGGTGTCAATTTACGTCGGATTA
*
48852344 AGTCGATGAGACACTGGGAGTCAATTTA
1 AGTCGATGAGACACTGGGTGTCAATTTA
48852372 TTACTTCGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
37 26 0.46
38 7 0.12
40 2 0.04
41 21 0.38
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (38 bp):
AGTCGATGAGACACTGGGTGTCAATTTACGTCGGATTA
Found at i:48854915 original size:20 final size:20
Alignment explanation
Indices: 48854887--48854998 Score: 102
Period size: 20 Copynumber: 5.7 Consensus size: 20
48854877 CTTATGCAAC
*
48854887 ATACTAAAATTTCTAAAGGT
1 ATACCAAAATTTCTAAAGGT
* * **
48854907 ATACCAAAATATCTGAAGAA
1 ATACCAAAATTTCTAAAGGT
* *
48854927 ATATCAAAATTTCTAAAGGG
1 ATACCAAAATTTCTAAAGGT
* *
48854947 GTACCAAAATTTCTAACACGT
1 ATACCAAAATTTCTAA-AGGT
* *
48854968 -TACCAAAATCTCTAATGG-
1 ATACCAAAATTTCTAAAGGT
48854986 ATACCAAAATTTC
1 ATACCAAAATTTC
48854999 CTAATGAATG
Statistics
Matches: 72, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 12 0.17
20 58 0.81
21 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.29
Consensus pattern (20 bp):
ATACCAAAATTTCTAAAGGT
Found at i:48855004 original size:20 final size:19
Alignment explanation
Indices: 48854968--48855029 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
48854958 TCTAACACGT
48854968 TACCAAAATCTCTAATGGA
1 TACCAAAATCTCTAATGGA
* *
48854987 TACCAAAATTTCCTAATGAA
1 TACCAAAATCT-CTAATGGA
*
48855007 TGCCAAAATCTCTAATGGA
1 TACCAAAATCTCTAATGGA
48855026 TACC
1 TACC
48855030 TACATTCCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (19 bp):
TACCAAAATCTCTAATGGA
Found at i:48855428 original size:19 final size:19
Alignment explanation
Indices: 48855334--48855466 Score: 83
Period size: 19 Copynumber: 7.0 Consensus size: 19
48855324 TCTAACATCT
* *
48855334 TCCATTAAAAATTTGGGTA
1 TCCATTAGAAATTTTGGTA
* *
48855353 TCCCTTACAAATTTTGGT-
1 TCCATTAGAAATTTTGGTA
* *
48855371 TCCCGTTAG-AAGTTTGGTA
1 T-CCATTAGAAATTTTGGTA
* * *
48855390 TCTATTTGAAGTTCTT-GTA
1 TCCATTAGAAATT-TTGGTA
48855409 TCCATTAGAAATTTTGGTA
1 TCCATTAGAAATTTTGGTA
*** ** *
48855428 TTTTGTTACCAATTTTTGTA
1 -TCCATTAGAAATTTTGGTA
48855448 TCCATTAGAAATTTTGGTA
1 TCCATTAGAAATTTTGGTA
48855467 CAATTTATTG
Statistics
Matches: 82, Mismatches: 26, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
18 15 0.18
19 52 0.63
20 15 0.18
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (19 bp):
TCCATTAGAAATTTTGGTA
Found at i:48856171 original size:20 final size:20
Alignment explanation
Indices: 48856148--48856192 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
48856138 TGCATTATAG
*
48856148 ATTTTAGTA-TTAGTTAAAA
1 ATTTTAGTATTTAATTAAAA
*
48856167 AATTTAGTATTTAATTAAAA
1 ATTTTAGTATTTAATTAAAA
48856187 ATTTTA
1 ATTTTA
48856193 AAAATTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATTTTAGTATTTAATTAAAA
Found at i:48859208 original size:20 final size:20
Alignment explanation
Indices: 48859165--48859208 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
48859155 CAAAACCATG
* *
48859165 AACCCTAAACCCAAACTTTT
1 AACCCTAAACCCAAACTCTC
48859185 AACCCTAAACCTCAAA-TCTC
1 AACCCTAAACC-CAAACTCTC
48859205 AACC
1 AACC
48859209 TCAAACCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCTAAACCCAAACTCTC
Found at i:48859308 original size:35 final size:34
Alignment explanation
Indices: 48859269--48859362 Score: 111
Period size: 35 Copynumber: 2.7 Consensus size: 34
48859259 TAATTCAAGA
48859269 TTCAAGGTTTAGGGTTTGGATTTAGAGTTTAAGGT
1 TTCAAGGTTT-GGGTTTGGATTTAGAGTTTAAGGT
* * *
48859304 TTCAAGTTTTTGGTTCTGGGTTTAGAGTTTAAGGT
1 TTCAAGGTTTGGGTT-TGGATTTAGAGTTTAAGGT
48859339 TT--AGGTTTGGAGTTTGGGATTTAG
1 TTCAAGGTTTGG-GTTT-GGATTTAG
48859363 GATTTAGGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
33 7 0.14
34 14 0.28
35 29 0.58
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.46
Consensus pattern (34 bp):
TTCAAGGTTTGGGTTTGGATTTAGAGTTTAAGGT
Found at i:48865967 original size:14 final size:14
Alignment explanation
Indices: 48865948--48865975 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48865938 CATATTGACT
48865948 CCTAATCTAAATCA
1 CCTAATCTAAATCA
48865962 CCTAATCTAAATCA
1 CCTAATCTAAATCA
48865976 TTATTCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CCTAATCTAAATCA
Found at i:48870057 original size:24 final size:24
Alignment explanation
Indices: 48870015--48870066 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
48870005 AATCAAAGTC
** *
48870015 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
48870039 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
48870063 AAAT
1 AAAT
48870067 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:48875085 original size:9 final size:9
Alignment explanation
Indices: 48875072--48875129 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
48875062 TTTGGTTAAA
*
48875072 AATTAACCA
1 AATTAACCG
48875081 AATTAACCG
1 AATTAACCG
48875090 AATTAACCG
1 AATTAACCG
*
48875099 AATTACCCG
1 AATTAACCG
48875108 AATTAACCG
1 AATTAACCG
*
48875117 AATTAACCA
1 AATTAACCG
48875126 AATT
1 AATT
48875130 GAATCACTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.47, C:0.22, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:48879340 original size:20 final size:20
Alignment explanation
Indices: 48879303--48879340 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48879293 TTTTTCTTTC
*
48879303 TTTATATATATATTAAATAA
1 TTTATATATATATAAAATAA
48879323 TTTATATCATATA-AAAAT
1 TTTATAT-ATATATAAAAT
48879341 TAAATATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTATATATATATAAAATAA
Found at i:48900472 original size:20 final size:21
Alignment explanation
Indices: 48900432--48900472 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48900422 TCCAAAAAAA
* *
48900432 TATAAAAAAGTTATTATTTAT
1 TATAAAAAAATTATTAATTAT
48900453 TATAAAAAAATTA-TAATTAT
1 TATAAAAAAATTATTAATTAT
48900473 GTGAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAAAAAAATTATTAATTAT
Found at i:48922318 original size:26 final size:26
Alignment explanation
Indices: 48922282--48922333 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
48922272 TGTGCATGGT
48922282 TATTCGAATGATGTCCGGGCTAAGTC
1 TATTCGAATGATGTCCGGGCTAAGTC
48922308 TATTCGAATGATGTCCGGGCTAAGTC
1 TATTCGAATGATGTCCGGGCTAAGTC
48922334 CCGAAGGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (26 bp):
TATTCGAATGATGTCCGGGCTAAGTC
Found at i:48922421 original size:39 final size:40
Alignment explanation
Indices: 48922322--48922545 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
48922312 CGAATGATGT
* * * *
48922322 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
48922362 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
48922402 CCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48922440 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48922481 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48922521 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48922546 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:48922567 original size:119 final size:119
Alignment explanation
Indices: 48922321--48922578 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
48922311 TCGAATGATG
* *
48922321 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* **
48922386 GTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * * *
48922440 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * * *
48922503 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
48922560 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
48922579 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:48939270 original size:27 final size:27
Alignment explanation
Indices: 48939240--48939305 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
48939230 CAGGGTTAGC
*
48939240 ACATAT-GGTTCGCACCTAGTGGTTCTT
1 ACATATGGGTT-GCACCTAGAGGTTCTT
**
48939267 ACATATGGGTTGCACCTAGAGGTTCGC
1 ACATATGGGTTGCACCTAGAGGTTCTT
48939294 ACATATAGGGTT
1 ACATAT-GGGTT
48939306 TGCATATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 25 0.74
28 9 0.26
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (27 bp):
ACATATGGGTTGCACCTAGAGGTTCTT
Found at i:48939540 original size:14 final size:14
Alignment explanation
Indices: 48939523--48939599 Score: 66
Period size: 14 Copynumber: 5.5 Consensus size: 14
48939513 CACATACAGA
48939523 GGTTCACTTATAGG
1 GGTTCACTTATAGG
* *
48939537 GGTTC-GTATACAGG
1 GGTTCACT-TATAGG
* * * *
48939551 CGCTCGCCTATAGG
1 GGTTCACTTATAGG
*
48939565 GGTTCACATATAGG
1 GGTTCACTTATAGG
*
48939579 GGCTCACTTATAGG
1 GGTTCACTTATAGG
48939593 GGTTCAC
1 GGTTCAC
48939600 ATACATGGGC
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
13 1 0.02
14 46 0.98
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (14 bp):
GGTTCACTTATAGG
Found at i:48939547 original size:28 final size:27
Alignment explanation
Indices: 48939510--48939613 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 27
48939500 TACATTCCAA
*
48939510 GTTCACATACAGAGGTTCACTTATAGGG
1 GTTCACATACAG-GGCTCACTTATAGGG
** * *
48939538 GTTCGTATACAGGCGCTCGCCTATAGGG
1 GTTCACATACAGG-GCTCACTTATAGGG
*
48939566 GTTCACATATAGGGGCTCACTTATAGGG
1 GTTCACATACA-GGGCTCACTTATAGGG
48939594 GTTCACATACATGGGCTCAC
1 GTTCACATACA-GGGCTCAC
48939614 ATGCAAGGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
27 1 0.02
28 59 0.95
29 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (27 bp):
GTTCACATACAGGGCTCACTTATAGGG
Found at i:48939613 original size:14 final size:14
Alignment explanation
Indices: 48939559--48939615 Score: 69
Period size: 14 Copynumber: 4.1 Consensus size: 14
48939549 GGCGCTCGCC
*
48939559 TATAGGGGTTCACA
1 TATAGGGGCTCACA
*
48939573 TATAGGGGCTCACT
1 TATAGGGGCTCACA
*
48939587 TATAGGGGTTCACA
1 TATAGGGGCTCACA
* *
48939601 TACATGGGCTCACA
1 TATAGGGGCTCACA
48939615 T
1 T
48939616 GCAAGGAGGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (14 bp):
TATAGGGGCTCACA
Found at i:48949023 original size:22 final size:23
Alignment explanation
Indices: 48948998--48949047 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
48948988 ATCTCATGAA
*
48948998 TATTTTATGTATA-TCTTTTCCT
1 TATTTTATGTATATTATTTTCCT
48949020 TA-TTTATGTATATTATTTTCCT
1 TATTTTATGTATATTATTTTCCT
48949042 TGATTT
1 T-ATTT
48949048 ATGGGCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.42
22 11 0.46
23 1 0.04
24 2 0.08
ACGTcount: A:0.20, C:0.10, G:0.06, T:0.64
Consensus pattern (23 bp):
TATTTTATGTATATTATTTTCCT
Found at i:48949027 original size:21 final size:23
Alignment explanation
Indices: 48949001--48949050 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
48948991 TCATGAATAT
*
48949001 TTTATGTATA-TCTTTTCCTT-A
1 TTTATGTATATTATTTTCCTTGA
48949022 TTTATGTATATTATTTTCCTTGA
1 TTTATGTATATTATTTTCCTTGA
48949045 TTTATG
1 TTTATG
48949051 GGCTAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 10 0.38
22 9 0.35
23 7 0.27
ACGTcount: A:0.20, C:0.10, G:0.08, T:0.62
Consensus pattern (23 bp):
TTTATGTATATTATTTTCCTTGA
Found at i:48954393 original size:3 final size:3
Alignment explanation
Indices: 48954385--48954418 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
48954375 AAAGGAAAGA
48954385 AAG AAG AAG -AG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
48954419 AGAAAGAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:48954429 original size:12 final size:12
Alignment explanation
Indices: 48954362--48954436 Score: 60
Period size: 11 Copynumber: 6.8 Consensus size: 12
48954352 TTCAAGCACC
*
48954362 GAAAGAGAGAAA
1 GAAAGAAAGAAA
48954374 GAAAGGAAAGAAA
1 GAAA-GAAAGAAA
48954387 G-AAG-AAGAGAA
1 GAAAGAAAGA-AA
48954398 G-AAG-AAG-AA
1 GAAAGAAAGAAA
48954407 G-AAG-AAG-AA
1 GAAAGAAAGAAA
48954416 GAAAGAAAGAAA
1 GAAAGAAAGAAA
48954428 GAAA-AAAGA
1 GAAAGAAAGA
48954437 TAATGTATTA
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
9 12 0.21
10 7 0.12
11 18 0.32
12 12 0.21
13 8 0.14
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (12 bp):
GAAAGAAAGAAA
Found at i:48954430 original size:8 final size:8
Alignment explanation
Indices: 48954362--48954436 Score: 60
Period size: 8 Copynumber: 10.2 Consensus size: 8
48954352 TTCAAGCACC
*
48954362 GAAAGAGA
1 GAAAGAAA
48954370 GAAAGAAA
1 GAAAGAAA
48954378 GGAAAGAAA
1 -GAAAGAAA
48954387 G-AAG-AA
1 GAAAGAAA
48954393 GAGAAG-AA
1 GA-AAGAAA
48954401 G-AAG-AA
1 GAAAGAAA
48954407 G-AAG-AA
1 GAAAGAAA
48954413 G-AAGAAA
1 GAAAGAAA
48954420 GAAAGAAA
1 GAAAGAAA
48954428 GAAA-AAA
1 GAAAGAAA
48954435 GA
1 GA
48954437 TAATGTATTA
Statistics
Matches: 61, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
6 18 0.30
7 11 0.18
8 24 0.39
9 8 0.13
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (8 bp):
GAAAGAAA
Found at i:48954658 original size:52 final size:53
Alignment explanation
Indices: 48954601--48954707 Score: 189
Period size: 52 Copynumber: 2.0 Consensus size: 53
48954591 TTTTTTATAA
*
48954601 TTATTTTAAAATTAATTTGTTAGTAATTTAGGA-TATGTTATAAATTGTTGTG
1 TTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTG
*
48954653 TTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAGTTGTTGTG
1 TTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTG
48954706 TT
1 TT
48954708 TAGTTTAGTA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
52 32 0.62
53 20 0.38
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (53 bp):
TTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTG
Found at i:48955193 original size:103 final size:104
Alignment explanation
Indices: 48954901--48955219 Score: 382
Period size: 103 Copynumber: 3.1 Consensus size: 104
48954891 TTATAGTTAT
* * * * *
48954901 TTATTTTGTTAATAATTTATGGGATTAGG-T-TACAAATTGTTAGTGTTTAGTATAGGGTTTTTT
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGT
* * * *
48954964 TATTTTTTTGTGATGTAATGTTTTTTTTAAA-ATAATTTTATAG
64 GATTTTTTT-TAATGTAA--TTTTTATAAAATATAATTTTATAG
48955007 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAG-TTATGTGTTTTGTG
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTA-GTGTTTTGTG
** *
48955071 ATTTTTTAGCAATGT-A-TTTTAAAAAATATAATTTTATAG
65 ATTTTTT-TTAATGTAATTTTTATAAAATATAATTTTATAG
*
48955110 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTATTTTGTGA
1 TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
* * *
48955175 TTTTTTTTAATGTAATTTTTATATAATGTAATTTTAT-T
66 TTTTTTTTAATGTAATTTTTATAAAATATAATTTTATAG
48955213 TTATTTT
1 TTATTTT
48955220 TCTTTATTTG
Statistics
Matches: 186, Mismatches: 19, Indels: 19
0.83 0.08 0.08
Matches are distributed among these distances:
102 12 0.06
103 86 0.46
104 28 0.15
105 4 0.02
106 56 0.30
ACGTcount: A:0.28, C:0.01, G:0.15, T:0.57
Consensus pattern (104 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
TTTTTTTTAATGTAATTTTTATAAAATATAATTTTATAG
Found at i:48957244 original size:13 final size:13
Alignment explanation
Indices: 48957222--48957255 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
48957212 GTATTCAATT
48957222 CAATCCAATTACC
1 CAATCCAATTACC
*
48957235 CAATCTAATTACC
1 CAATCCAATTACC
*
48957248 CAACCCAA
1 CAATCCAA
48957256 CCCAATCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (13 bp):
CAATCCAATTACC
Found at i:48957377 original size:9 final size:9
Alignment explanation
Indices: 48957357--48957450 Score: 125
Period size: 9 Copynumber: 10.4 Consensus size: 9
48957347 TGTATGATTC
*
48957357 AATTAGGTT
1 AATTCGGTT
* *
48957366 AATTTGGGT
1 AATTCGGTT
48957375 AATTCGGTT
1 AATTCGGTT
48957384 AATTCGGTT
1 AATTCGGTT
*
48957393 AATTCGGGT
1 AATTCGGTT
48957402 AATTCGGTT
1 AATTCGGTT
**
48957411 AATTCGGGC
1 AATTCGGTT
48957420 AATTCGGTT
1 AATTCGGTT
*
48957429 AATTTGGTT
1 AATTCGGTT
48957438 AATTCGGTT
1 AATTCGGTT
48957447 AATT
1 AATT
48957451 TTTAACCAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 73 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:48958282 original size:76 final size:78
Alignment explanation
Indices: 48958196--48958369 Score: 280
Period size: 78 Copynumber: 2.3 Consensus size: 78
48958186 AATAACTTCA
* * *
48958196 TATTTATGTAATGAATTTTTTTTCATTTTATTTATCAATTTTAT-GTTT-TTTTTTGCAATTTAA
1 TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAATTTTATGGTTTGTTTTTTACAATTTAA
* * *
48958259 ATAGTCAACTTTT
66 ATAATAAACTTTG
48958272 TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAATTTTATGGTTTGTTTTTTACAATTTAA
1 TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAATTTTATGGTTTGTTTTTTACAATTTAA
48958337 ATAATAAACTTTG
66 ATAATAAACTTTG
48958350 TATTTATGTAATGACTTTTT
1 TATTTATGTAATGACTTTTT
48958370 CGCTATTTCA
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
76 42 0.47
77 4 0.04
78 44 0.49
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (78 bp):
TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAATTTTATGGTTTGTTTTTTACAATTTAA
ATAATAAACTTTG
Found at i:48958392 original size:78 final size:75
Alignment explanation
Indices: 48958196--48958369 Score: 258
Period size: 76 Copynumber: 2.3 Consensus size: 75
48958186 AATAACTTCA
* * *
48958196 TATTTATGTAATGAATTTTTTTTCATTTTATTTATCAATTTTATGTTTTTTTTTGCAATTTAAAT
1 TATTTATGTAATG-ACTTTTTGTCATTTTATTTATCAATTTTATGTTTTTTTTTACAATTTAAAT
* * *
48958261 AGTCAACTTTT
65 AATAAACTTTG
48958272 TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAATTTTATGGTTTGTTTTTTACAATTTAA
1 TATTTATGTAATGAC-TTTTTGTCATTTTATTTATCAATTTTAT-GTTT-TTTTTTACAATTTAA
48958337 ATAATAAACTTTG
63 ATAATAAACTTTG
48958350 TATTTATGTAATGACTTTTT
1 TATTTATGTAATGACTTTTT
48958370 CGCTATTTCA
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
75 1 0.01
76 40 0.45
77 9 0.10
78 39 0.44
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (75 bp):
TATTTATGTAATGACTTTTTGTCATTTTATTTATCAATTTTATGTTTTTTTTTACAATTTAAATA
ATAAACTTTG
Found at i:48961242 original size:41 final size:40
Alignment explanation
Indices: 48961197--48961282 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 40
48961187 AAAGATAAAA
48961197 ATATGTTTATATGAATGTA-TATACAATATATATTTGCATGT
1 ATATGTTTAT-TGAATGTAGTATACAA-ATATATTTGCATGT
* * **
48961238 ATATGTTTATTTAATTTAGTTATTGAAATATATTTGCATGT
1 ATATGTTTATTGAATGTAG-TATACAAATATATTTGCATGT
48961279 ATAT
1 ATAT
48961283 ACAATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 6 0.15
41 28 0.72
42 5 0.13
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (40 bp):
ATATGTTTATTGAATGTAGTATACAAATATATTTGCATGT
Found at i:48961437 original size:23 final size:23
Alignment explanation
Indices: 48961407--48961456 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
48961397 ATGTACTAGT
48961407 ACCAAAACAAAAGCAGTATACCC
1 ACCAAAACAAAAGCAGTATACCC
48961430 ACCAAAACAAAAGCAGTATACCC
1 ACCAAAACAAAAGCAGTATACCC
48961453 ACCA
1 ACCA
48961457 GTATAATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (23 bp):
ACCAAAACAAAAGCAGTATACCC
Found at i:48980842 original size:29 final size:29
Alignment explanation
Indices: 48980789--48980845 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
48980779 TTTCATGCTA
*
48980789 ATTTTTTTAATTTCAAGTTATTTTATTAT
1 ATTTTTTTAATTTCAAATTATTTTATTAT
*
48980818 ATTTTTTTAATTATTAAATTA-TTTATTA
1 ATTTTTTTAATT-TCAAATTATTTTATTA
48980846 ACGTGAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (29 bp):
ATTTTTTTAATTTCAAATTATTTTATTAT
Found at i:48983149 original size:21 final size:20
Alignment explanation
Indices: 48983125--48983164 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
48983115 TGATCCTTAT
48983125 AAAATAATTACAAAAATATTC
1 AAAATAATTA-AAAAATATTC
* *
48983146 AAAATATTTATAAAATATT
1 AAAATAATTAAAAAATATT
48983165 TTTCCCTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAATAATTAAAAAATATTC
Found at i:48984973 original size:72 final size:72
Alignment explanation
Indices: 48984822--48984976 Score: 166
Period size: 72 Copynumber: 2.2 Consensus size: 72
48984812 CAAACTTTAC
* * * * * *
48984822 TTGATGCTTCTCACACAAGCTTCAGAGAATTCATAACACGTGCCGAATCTCAAGCCATCGGTAAA
1 TTGATGCTACTCACACAAGCTTCAGAAAATCCACAACACGTGCCGAATCTCAAGCCACCGATAAA
**
48984887 GGATAAT
66 CAATAAT
** * ** * *
48984894 TCAATGCTACTCACACAAGCTTTAGAAAATCCACAACACGTGTTGGATCTCAAGCCACCGATAAT
1 TTGATGCTACTCACACAAGCTTCAGAAAATCCACAACACGTGCCGAATCTCAAGCCACCGATAAA
*
48984959 CAATGAT
66 CAATAAT
48984966 TTGATGCTACT
1 TTGATGCTACT
48984977 TACTGATACG
Statistics
Matches: 65, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (72 bp):
TTGATGCTACTCACACAAGCTTCAGAAAATCCACAACACGTGCCGAATCTCAAGCCACCGATAAA
CAATAAT
Found at i:48991482 original size:5 final size:5
Alignment explanation
Indices: 48991462--48991496 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
48991452 TATACTATAA
48991462 TAATT T-ATT T-ATT TAATT TAATT TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TAATT TAATT TA
48991497 TACTAGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 8 0.28
5 21 0.72
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TAATT
Found at i:49003239 original size:16 final size:17
Alignment explanation
Indices: 49003209--49003243 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
49003199 AGGTAACAAA
49003209 AATAATATAAACTTTAT
1 AATAATATAAACTTTAT
*
49003226 AATAA-ATAATCTTTAT
1 AATAATATAAACTTTAT
49003242 AA
1 AA
49003244 GAAAAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
AATAATATAAACTTTAT
Found at i:49007561 original size:10 final size:10
Alignment explanation
Indices: 49007546--49007584 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
49007536 TTTATTTTTA
49007546 AAATATTATT
1 AAATATTATT
49007556 AAATATTATT
1 AAATATTATT
*
49007566 AAATTTTA-T
1 AAATATTATT
*
49007575 AAAAATTATT
1 AAATATTATT
49007585 TTAATTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
AAATATTATT
Found at i:49008214 original size:26 final size:25
Alignment explanation
Indices: 49008173--49008220 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
49008163 TCTAAAAATG
49008173 ATTTAAAATAATAAAAAATTCAATT
1 ATTTAAAATAATAAAAAATTCAATT
*
49008198 ATTTTAAATAATAAAAAATTCAA
1 ATTTAAAATAATAAAAAATTCAA
49008221 AAAATCATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
ATTTAAAATAATAAAAAATTCAATT
Found at i:49008292 original size:18 final size:19
Alignment explanation
Indices: 49008227--49008295 Score: 77
Period size: 21 Copynumber: 3.5 Consensus size: 19
49008217 TCAAAAAATC
49008227 ATTAAAAGTTTGTAAATGATT
1 ATTAAAA-TTTGTAAAT-ATT
*
49008248 ATTAAAAAATTGTAAATATTT
1 ATT-AAAATTTGTAAATA-TT
*
49008269 ATTAAAATTTGTAAATA-G
1 ATTAAAATTTGTAAATATT
49008287 ATTAAAATT
1 ATTAAAATT
49008296 ATTTAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
18 9 0.21
20 14 0.33
21 16 0.37
22 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (19 bp):
ATTAAAATTTGTAAATATT
Found at i:49008332 original size:29 final size:29
Alignment explanation
Indices: 49008272--49008334 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
49008262 AATATTTATT
*
49008272 AAAATTTGTAAATAGATTAAAATTATTTA
1 AAAATTTGTAAATAGATTAAAATTATTAA
*
49008301 AAAATTT-TAAAGTTGATTTAAAATTA-TAA
1 AAAATTTGTAAA-TAGA-TTAAAATTATTAA
49008330 AAAAT
1 AAAAT
49008335 AATAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.13
29 17 0.57
30 9 0.30
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (29 bp):
AAAATTTGTAAATAGATTAAAATTATTAA
Found at i:49008375 original size:19 final size:17
Alignment explanation
Indices: 49008290--49008388 Score: 63
Period size: 19 Copynumber: 5.4 Consensus size: 17
49008280 TAAATAGATT
*
49008290 AAAATTATTTAAAAATTTT
1 AAAATTA-TT-AAAATTTA
*
49008309 AAAGTTGATTTAAAATTATA
1 AAAATT-A-TTAAAATT-TA
* * *
49008329 AAAAATAATAAAAATTA
1 AAAATTATTAAAATTTA
*
49008346 AAAATTGTTAAAATTGTA
1 AAAATTATTAAAATT-TA
*
49008364 AATAATTATTAAAAATTA
1 AA-AATTATTAAAATTTA
49008382 CAAAATT
1 -AAAATT
49008389 CACCCCTAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
17 13 0.21
18 16 0.25
19 25 0.40
20 9 0.14
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATTATTAAAATTTA
Found at i:49008645 original size:17 final size:17
Alignment explanation
Indices: 49008625--49008659 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
49008615 ATATAATTTT
49008625 AAAAAA-TAAAACATATA
1 AAAAAATTAAAA-ATATA
49008642 AAAAAATTAAAAATATA
1 AAAAAATTAAAAATATA
49008659 A
1 A
49008660 TTTTGTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAAAATTAAAAATATA
Found at i:49008742 original size:15 final size:16
Alignment explanation
Indices: 49008717--49008775 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 16
49008707 ATATTGAATT
49008717 ATTTATAAAAAAAT-AA
1 ATTT-TAAAAAAATAAA
*
49008733 ATTTTAAAAATATAAA
1 ATTTTAAAAAAATAAA
49008749 ATTTT--AAAAATGAAA
1 ATTTTAAAAAAAT-AAA
*
49008764 ATTATAAAAAAA
1 ATTTTAAAAAAA
49008776 AGTAAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
14 5 0.14
15 15 0.42
16 11 0.31
17 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
ATTTTAAAAAAATAAA
Found at i:49009262 original size:3 final size:3
Alignment explanation
Indices: 49009254--49009301 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
49009244 TTCTCCTTAT
49009254 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
49009302 AATTTCATGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:49010000 original size:16 final size:16
Alignment explanation
Indices: 49009962--49010005 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
49009952 TGGTTTATAA
49009962 TTTTTTGGATTTAGGG
1 TTTTTTGGATTTAGGG
*** *
49009978 AGATTTGGGTTTAGGG
1 TTTTTTGGATTTAGGG
49009994 TTTTTTGGATTT
1 TTTTTTGGATTT
49010006 CTTTGTTGAA
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.32, T:0.55
Consensus pattern (16 bp):
TTTTTTGGATTTAGGG
Found at i:49011677 original size:42 final size:43
Alignment explanation
Indices: 49011618--49011766 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 43
49011608 CGAGATTACA
* *
49011618 TGTAAGACCATATCTGGGATA-TGGCATTGATATGAGACTTCG
1 TGTAAGACCATGTCTGGGATATTGGCATCGATATGAGACTTCG
* * * *
49011660 TGTAAGATCATGTCTGGGACATTGGCATCGATATGTGATTTCG
1 TGTAAGACCATGTCTGGGATATTGGCATCGATATGAGACTTCG
* * * *
49011703 TGTAAGACCATGGCTGGGCTATTGGCATCGATA-AAGA-TTACA
1 TGTAAGACCATGTCTGGGATATTGGCATCGATATGAGACTT-CG
* *
49011745 TGTAAGACCATATATGGGATAT
1 TGTAAGACCATGTCTGGGATAT
49011767 GACATTGTTA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
41 2 0.02
42 39 0.44
43 47 0.53
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGATATTGGCATCGATATGAGACTTCG
Found at i:49012085 original size:15 final size:15
Alignment explanation
Indices: 49012065--49012095 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
49012055 AAATGTGCTC
49012065 ATTTGGCTATATGGA
1 ATTTGGCTATATGGA
49012080 ATTTGGCTATATGGA
1 ATTTGGCTATATGGA
49012095 A
1 A
49012096 GTATAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (15 bp):
ATTTGGCTATATGGA
Found at i:49013727 original size:16 final size:15
Alignment explanation
Indices: 49013706--49013753 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
49013696 GATGGGAATA
49013706 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
49013722 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
49013737 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
49013753 A
1 A
49013754 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:49013736 original size:8 final size:8
Alignment explanation
Indices: 49013702--49013753 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
49013692 CAATGATGGG
*
49013702 AATAATAA
1 AATATTAA
49013710 AATATATAA
1 AATAT-TAA
49013719 AATA-TAA
1 AATATTAA
49013726 AATATTAA
1 AATATTAA
*
49013734 AATATCAA
1 AATATTAA
*
49013742 AATATTAG
1 AATATTAA
49013750 AATA
1 AATA
49013754 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:49013753 original size:24 final size:24
Alignment explanation
Indices: 49013701--49013757 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
49013691 ACAATGATGG
*
49013701 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
49013725 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
49013749 GAATAATAA
1 GAATAATAA
49013758 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:49013919 original size:23 final size:19
Alignment explanation
Indices: 49013868--49013925 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 19
49013858 ATACTACATC
49013868 AATATGTACATATATAAAA
1 AATATGTACATATATAAAA
**
49013887 AATAAATACATGATAATACTAAA
1 AATATGTACAT-AT-ATA--AAA
49013910 AATATGTACATATATA
1 AATATGTACATATATA
49013926 GTGTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 9 0.29
20 2 0.06
21 6 0.19
22 2 0.06
23 12 0.39
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (19 bp):
AATATGTACATATATAAAA
Found at i:49013933 original size:24 final size:25
Alignment explanation
Indices: 49013906--49013952 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
49013896 ATGATAATAC
**
49013906 TAAAAATATGTACAT-ATATAGTGT
1 TAAAAATACATACATAATATAGTGT
49013930 TAAAAATACATACATAATATAGT
1 TAAAAATACATACATAATATAGT
49013953 TAAGATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (25 bp):
TAAAAATACATACATAATATAGTGT
Found at i:49013954 original size:23 final size:23
Alignment explanation
Indices: 49013884--49013968 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 23
49013874 TACATATATA
* * *
49013884 AAAAATAAATACATGATAATA-CT
1 AAAAATATATACATAAT-ATAGTT
*
49013907 AAAAATATGTACAT-ATATAGTGTT
1 AAAAATATATACATAATATA--GTT
*
49013931 AAAAATACATACATAATATAGTT
1 AAAAATATATACATAATATAGTT
*
49013954 -AAGATATATACATAA
1 AAAAATATATACATAA
49013969 GATAACATGT
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
21 3 0.06
22 15 0.29
23 15 0.29
24 13 0.25
25 5 0.10
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (23 bp):
AAAAATATATACATAATATAGTT
Found at i:49014012 original size:16 final size:16
Alignment explanation
Indices: 49013983--49014045 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
49013973 ACATGTAGAA
49013983 AAAT-ATATATATATAT
1 AAATAATATA-ATATAT
49013999 AAATAATATAATAT-T
1 AAATAATATAATATAT
*
49014014 AAAGATATATAA-ATA-
1 AAATA-ATATAATATAT
* *
49014029 AAATAGTATAAAATAT
1 AAATAATATAATATAT
49014045 A
1 A
49014046 TATATACGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.13
15 14 0.36
16 15 0.38
17 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATAATATAATATAT
Found at i:49014027 original size:25 final size:25
Alignment explanation
Indices: 49013993--49014126 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
49013983 AAATATATAT
49013993 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
49014018 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
49014043 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
49014069 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
49014091 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
49014114 AAATAT-AATAATA
1 ATATATAAATAATA
49014127 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:49014727 original size:30 final size:29
Alignment explanation
Indices: 49014606--49014739 Score: 160
Period size: 30 Copynumber: 4.5 Consensus size: 29
49014596 GTAGGTACAA
* *
49014606 TTGGTGGTGGAGCAAGTGTGGTTAGTGGAG
1 TTGGTGGTGGA-AAAGTGTGGCTAGTGGAG
* ** * *
49014636 TAGGTAATGGAGCAAGTGTGGCTAGTGGAT
1 TTGGTGGTGGA-AAAGTGTGGCTAGTGGAG
*
49014666 TTGGTGGTGGAGAAGGTGTGGCTAGTGGAG
1 TTGGTGGTGGA-AAAGTGTGGCTAGTGGAG
49014696 TTGGTGGTGGAAAAGGTGTGGCTAGTGGAG
1 TTGGTGGTGGAAAA-GTGTGGCTAGTGGAG
49014726 TTGGTGGTGGAAAA
1 TTGGTGGTGGAAAA
49014740 AGCTAAGATT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 2 0.02
30 89 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.28
Consensus pattern (29 bp):
TTGGTGGTGGAAAAGTGTGGCTAGTGGAG
Found at i:49015646 original size:13 final size:14
Alignment explanation
Indices: 49015598--49015660 Score: 74
Period size: 14 Copynumber: 4.5 Consensus size: 14
49015588 GAGTTGATTT
* *
49015598 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
49015612 TTGGAAAAACAGAAA
1 TT-GAAAAACAGAAA
*
49015627 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
*
49015641 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
49015654 TTGAAAA
1 TTGAAAA
49015661 GACCTCAGCG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:49015716 original size:117 final size:117
Alignment explanation
Indices: 49015525--49015749 Score: 310
Period size: 117 Copynumber: 1.9 Consensus size: 117
49015515 ACTTAATTTG
* * * *
49015525 AAAAACAGATTTTGAAAATACCTCGACATGTGAACCCAAGGCTCAACTCACATCTCGCGATATGA
1 AAAAACAGAATTTGAAAAGACCTCGACATGTGAACCCAAGACTCAACTCACATCTCGCAATATGA
* * *
49015590 GTTGATTTTTGAAAAATATAAATTGGAAAAACAGAAATTGAAAAGCAGAAATT
66 GTTGATTTTTGAAAAACAGAAATT-GAAAAACAGAAATGGAAAAGCAGAAATT
* * * *
49015643 AAAAACAGAATTTGAAAAGACCTC-AGCGTGT-AGCCCGAGACTCAACTCACCTCTCGCAATATG
1 AAAAACAGAATTTGAAAAGACCTCGA-CATGTGAACCCAAGACTCAACTCACATCTCGCAATATG
*
49015706 AGTTGATTTTTGAAAAGCAGAAATTGAAAAACAGAAATGGAAAA
65 AGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATGGAAAA
49015750 CACCTCAGCG
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
116 18 0.19
117 50 0.53
118 26 0.28
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (117 bp):
AAAAACAGAATTTGAAAAGACCTCGACATGTGAACCCAAGACTCAACTCACATCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATGGAAAAGCAGAAATT
Found at i:49015734 original size:14 final size:14
Alignment explanation
Indices: 49015715--49015749 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
49015705 GAGTTGATTT
*
49015715 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
49015729 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
49015743 TGGAAAA
1 TTGAAAA
49015750 CACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:49015793 original size:85 final size:86
Alignment explanation
Indices: 49015627--49015819 Score: 255
Period size: 85 Copynumber: 2.2 Consensus size: 86
49015617 AAAACAGAAA
* * *
49015627 TTGAAAAGCAGAAATTAAAAACAGAATTTGAAAAGACCTCAGCGTGTAGCCCGAGACTCAACTCA
1 TTGAAAAGCAGAAATTAAAAACAGAAATGGAAAACACCTCAGCG-GTA-CCCGAGACTCAACTCA
49015692 CCTCTCGCAATATGAGTTGATTT
64 CCTCTCGCAATATGAGTTGATTT
** **
49015715 TTGAAAAGCAGAAATTGAAAAACAGAAATGGAAAACACCTCAGC-GT-CTTGAGGTTCAACTCAC
1 TTGAAAAGCAGAAATT-AAAAACAGAAATGGAAAACACCTCAGCGGTACCCGAGACTCAACTCAC
**
49015778 CTCTCGCAATATGAGTTTTTTT
65 CTCTCGCAATATGAGTTGATTT
*
49015800 TTGAAAAACAGAAATTAAAA
1 TTGAAAAGCAGAAATTAAAA
49015820 GGCTCAACTC
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
84 4 0.04
85 48 0.51
87 2 0.02
88 16 0.17
89 24 0.26
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (86 bp):
TTGAAAAGCAGAAATTAAAAACAGAAATGGAAAACACCTCAGCGGTACCCGAGACTCAACTCACC
TCTCGCAATATGAGTTGATTT
Found at i:49015928 original size:14 final size:14
Alignment explanation
Indices: 49015909--49015971 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
49015899 GAGTTGATTT
*
49015909 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
49015923 TTGAAAAAATAGAAA
1 TTG-AAAAATAGAAA
**
49015938 TTGAAAAGCAGAAA
1 TTGAAAAATAGAAA
* *
49015952 TT-AAAAACAGAAT
1 TTGAAAAATAGAAA
49015965 TTGAAAA
1 TTGAAAA
49015972 GACCTCAGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 18 0.43
15 13 0.31
ACGTcount: A:0.62, C:0.03, G:0.13, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:49015932 original size:15 final size:15
Alignment explanation
Indices: 49015912--49015944 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
49015902 TTGATTTTTG
*
49015912 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
49015927 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
49015942 AAA
1 AAA
49015945 GCAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:49015944 original size:13 final size:13
Alignment explanation
Indices: 49015928--49015971 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
49015918 ATAAATTGAA
*
49015928 AAAATAGAAATTG
1 AAAACAGAAATTG
*
49015941 AAAAGCAGAAATTA
1 AAAA-CAGAAATTG
*
49015955 AAAACAGAATTTG
1 AAAACAGAAATTG
49015968 AAAA
1 AAAA
49015972 GACCTCAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.64, C:0.05, G:0.14, T:0.18
Consensus pattern (13 bp):
AAAACAGAAATTG
Found at i:49016082 original size:75 final size:76
Alignment explanation
Indices: 49015954--49016726 Score: 610
Period size: 75 Copynumber: 10.0 Consensus size: 76
49015944 AGCAGAAATT
* * * ** * * *
49015954 AAAAACAGAATTTGAAAAGACCTCAGTGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATAAG
1 AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016019 TTGA-TTTTTG
66 TTGATTTTTTG
*
49016029 AAAAGCAGAAATTGAAAATGCCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016094 TTGATTCTTTTG
66 TTGATT-TTTTG
** *
49016106 AAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016171 TTGATTCTTTTG
66 TTGATT-TTTTG
* ** ** *
49016183 AAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTC
1 AAAAGCAGAAATT-----G-A-AAA-T--ACCT-CAGCA-TGTGACCCGAGGCTCAACTCACCTC
*
49016248 TCGCAATGTGAGTTGATTTTTTG
54 TCGCAATATGAGTTGATTTTTTG
** * *
49016271 ATAAAAATAGAATTTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 --AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
49016334 AGTTGATGTTTTTG
64 AGTTGAT-TTTTTG
* * ** * * * * ** *
49016348 AAAAACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTC
1 AAAAGCAGAAATTG-A-AA-ATACCT---CAGCA--T--GTGACCCGAGGCTCAACTCACCTCTC
*
49016413 GCAATATGAGCTGATTTTTTTG
56 GCAATATGAGTTGA-TTTTTTG
* ** * *
49016435 -AAAGACAGAAATTGAAAATACCTCA--ATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
49016497 CTTGA-TTTTTG
65 GTTGATTTTTTG
* ** * *
49016508 ACAAA-CA-AAATTGAAATTACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTTGCAATATGA
1 A-AAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
49016567 GCTGATTTTTTTTT
65 GTTGA--TTTTTTG
* * **
49016581 AAAAGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
49016646 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
* * **
49016659 --ATG-ATAAATTGAAAATACCTCA--ATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016719 TTGATTTT
66 TTGATTTT
49016727 GAAAAATAAA
Statistics
Matches: 579, Mismatches: 74, Indels: 94
0.78 0.10 0.13
Matches are distributed among these distances:
70 30 0.05
71 4 0.01
72 59 0.10
73 14 0.02
74 20 0.03
75 126 0.22
76 44 0.08
77 103 0.18
78 10 0.02
79 33 0.06
80 2 0.00
81 3 0.01
82 2 0.00
83 4 0.01
84 7 0.01
85 3 0.01
86 4 0.01
87 51 0.09
88 8 0.01
89 41 0.07
90 11 0.02
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (76 bp):
AAAAGCAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:49016138 original size:77 final size:76
Alignment explanation
Indices: 49015954--49017126 Score: 758
Period size: 77 Copynumber: 15.2 Consensus size: 76
49015944 AGCAGAAATT
* * * * * * *
49015954 AAAAACAGAATTTGAAAAGACCTCAGTGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATAAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016019 TTGA-TTTTTG
66 TTGATTTTTTG
* *
49016029 AAAAGCAGAAATTGAAAATGCCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016094 TTGATTCTTTTG
66 TTGATT-TTTTG
**
49016106 AAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016171 TTGATTCTTTTG
66 TTGATT-TTTTG
* ** ** *
49016183 AAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTC
1 AAAAGCAGAAATT-----G-A-AAA-T--ACCT-CAGC-GTGTGACCCGAGGCTCAACTCACCTC
*
49016248 TCGCAATGTGAGTTGATTTTTTG
54 TCGCAATATGAGTTGATTTTTTG
** *
49016271 ATAAAAATAGAATTTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
1 --AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
49016334 AGTTGATGTTTTTG
64 AGTTGAT-TTTTTG
* *** * * * ** *
49016348 AAAAACAGAAATTGAAGAACAAAAATGGAAAACA-CCTCAGCGTCTTGAGGTTCAACTCACCTCT
1 AAAAGCAGAAATT---G----AAAAT--ACCTCAGCGT--GTGACCCGAGGCTCAACTCACCTCT
*
49016412 CGCAATATGAGCTGATTTTTTTG
55 CGCAATATGAGTTGA-TTTTTTG
* * ** * *
49016435 -AAAGACAGAAATTGAAAATACCTCA--ATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
49016497 CTTGA-TTTTTG
65 GTTGATTTTTTG
* ** * *
49016508 ACAAA-CA-AAATTGAAATTACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTTGCAATATGA
1 A-AAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
49016567 GCTGATTTTTTTTT
65 GTTGA--TTTTTTG
* **
49016581 AAAAGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
49016646 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
* * * **
49016659 --ATG-ATAAATTGAAAATACCTCA--ATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
49016719 TTGA--TTTTG
66 TTGATTTTTTG
* * *** ** * * * * *
49016728 AAAA--ATAAATT-AAAACACAAAAATTGAC-AAT-ACCTCAGCGTGCCCCGAGGCTCAACTCAC
1 AAAAGCAGAAATTGAAAATAC-CTCA--G-CGTGTGACC-C-GAG-G-CTC-A-ACTCACCTCTC
* *
49016788 -C--TCTCGCAATATGAGTTGATTTTTG
56 GCAATAT-G-AGT-TGA--T--TTTTTG
* * * * *
49016813 AAAAACAGAAATTTAAAAATACCTCAGCGCGT--CCTGAGGCTCAACTAACCTCTCGCAATATGA
1 AAAAGCAGAAA-TTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
49016876 GTTGATTTTATTTT
65 GTTGA-TTT-TTTG
* * * *
49016890 ACGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGA-GCTCAACTCACCTCTCGCAATATGA
1 A-AAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
49016953 GTT-AATTTTTG
65 GTTGATTTTTTG
*
49016964 ACAAA-CAGAAATTGAAATTACCTCAGCGTGT---CCGAGGCTCAACTCACCTCTCGCAATATGA
1 A-AAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
49017025 GTTGA--TTTTG
65 GTTGATTTTTTG
* * *
49017035 AAAAACAGAAATTAAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
49017098 TTGATTTTTTT
66 TTGATTTTTTG
*
49017109 ACGAA-CAGAAATTGAAAA
1 A-AAAGCAGAAATTGAAAA
49017127 ACAGAAATTG
Statistics
Matches: 885, Mismatches: 125, Indels: 177
0.75 0.11 0.15
Matches are distributed among these distances:
69 11 0.01
70 41 0.05
71 35 0.04
72 121 0.14
73 17 0.02
74 68 0.08
75 131 0.15
76 61 0.07
77 141 0.16
78 26 0.03
79 53 0.06
80 11 0.01
81 3 0.00
82 10 0.01
83 8 0.01
84 8 0.01
85 14 0.02
86 5 0.01
87 51 0.06
88 11 0.01
89 48 0.05
90 11 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (76 bp):
AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:49016199 original size:14 final size:14
Alignment explanation
Indices: 49016180--49016214 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
49016170 GTTGATTCTT
*
49016180 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
49016194 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
49016208 TTGAAAA
1 TTGAAAA
49016215 TACCTCAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:49016260 original size:89 final size:90
Alignment explanation
Indices: 49016103--49016290 Score: 281
Period size: 89 Copynumber: 2.1 Consensus size: 90
49016093 GTTGATTCTT
*
49016103 TTGAAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAGCAGAAATTGAAAACACCTCA-CGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
49016168 GAGTTGATTCTTTTG-AAAAGTAGAAA
65 GAGTTGATT-TTTTGAAAAAATAGAAA
* * *
49016194 TTGAAAAGCAGAAATTGAAAATACCTCA-GTGTGTCCCGAGGCTCAACTCACCTCTCGCAATGTG
1 TTGAAAAGCAGAAATTGAAAACACCTCACGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
49016258 AGTTGATTTTTTGATAAAAATAGAAT
66 AGTTGATTTTTTGA-AAAAATAGAAA
49016284 TTGAAAA
1 TTGAAAA
49016291 TACCTCAGCG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
88 5 0.06
89 42 0.47
90 16 0.18
91 26 0.29
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (90 bp):
TTGAAAAGCAGAAATTGAAAACACCTCACGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTGAAAAAATAGAAA
Found at i:49016934 original size:235 final size:221
Alignment explanation
Indices: 49016376--49017493 Score: 1087
Period size: 235 Copynumber: 4.9 Consensus size: 221
49016366 ACAAAAATGG
* * * * * *
49016376 AAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGA
* * * * * *
49016438 GACAGAAATTGAAAATACCTCA--ATGTG-TCTTGAGGCTCAACTTATCTCTCGCAATATGACTT
66 -ACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT
** * *
49016500 GATTTTTGACAAAC-AAAATTGAAATTACCTCAGCGT-CTTGAGGTTCAACTCACCTCTTGCAAT
129 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAAT
* * *
49016563 ATGAGCTGATTTTTTTTTAAAAGACAGAAATTG
194 ATGAGTTGA----TTTTGAAAA-ACAGAAATTA
* *
49016596 AAAATACCTCAACGTGTGAAAC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-
1 AAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTA
** * * *
49016658 -GATGATAAATTGAAAATACCTCA--ATGTGA-CTTGAGGCTCAACTCACCTCTCGCAATATGAG
63 CGAACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAG
* *
49016719 TTGATTTTGAAAAATAAATTAAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAA
127 TTGA-TTT------T---TGACAA-ACAAAAATTGA-AATTACCTCAGCGTG-CCCGAGGCTCAA
49016783 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTA
179 CTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAA-TTA
* *
49016828 AAAATACCTCAGCGCGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTATTTTACG
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTTTACG
*
49016893 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGA-GCTCAACTCACCTCTCGCAATATGAGTTA
65 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
49016957 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATA
130 ATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATA
49017022 TGAGTTGATTTTGAAAAACAGAAATTA
195 TGAGTTGATTTTGAAAAACAGAAATTA
*
49017049 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT---TA
*
49017114 CAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCG
63 C-------G---AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCG
* * **
49017179 CAATAGGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTC
118 CAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTC
* *
49017244 ACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTG
182 ACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTA
*
49017284 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAG
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--------
** ** * * * *
49017349 AAATTAAAAACCAGAAA-TGAAAATA-CTCAG--TGTGAGCCAAGGCTGAACTCACCTCTTGCAA
58 -TTTTACGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAA
* ** * ** *
49017410 TATGAG-TAATTTTT-ATGAACATAAATT-AAACCACCTCAGCGTGTCCTGAGGCTCAACTCACC
121 TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACC
49017472 TCTCGCAATATGAGTTGATTTT
185 TCTCGCAATATGAGTTGATTTT
49017494 TTTGAAAATC
Statistics
Matches: 776, Mismatches: 66, Indels: 107
0.82 0.07 0.11
Matches are distributed among these distances:
220 14 0.02
221 114 0.15
222 22 0.03
223 45 0.06
224 53 0.07
225 58 0.07
226 10 0.01
227 7 0.01
228 35 0.05
229 1 0.00
230 38 0.05
231 23 0.03
232 38 0.05
233 54 0.07
234 87 0.11
235 166 0.21
236 8 0.01
237 1 0.00
241 1 0.00
244 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (221 bp):
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGA
ACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGAAAAACAGAAATTA
Found at i:49017015 original size:72 final size:72
Alignment explanation
Indices: 49016365--49017126 Score: 565
Period size: 72 Copynumber: 10.2 Consensus size: 72
49016355 GAAATTGAAG
* * * * * * *
49016365 AACAAAAATGGAAAACACCTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
49016429 TTTTTGA-A
64 TTTTTGACA
** * * * *
49016437 AGACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGACTTGA
1 A-ACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
49016502 TTTTTGACA
64 TTTTTGACA
* * * * * *
49016511 AACA-AAATTGAAATTACCTCAGCGTCT-TGAGGTTCAACTCACCTCTTGCAATATGAGCTGATT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* *
49016574 TTTTTTTAAA
64 -TTTTTGACA
* *
49016584 AGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-ACAGAAATTGAAAATACCTCAGCGTGT---CCGAGGCTCAACTCACCTCTCGCAATATGAGTT
***
49016649 GATTTTT-TTG
62 GATTTTTGACA
** * ** * *
49016659 ATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
49016723 TTTTGA-A
65 TTTTGACA
* * *** * * * * * * * *
49016730 AA-ATAAATT-AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
1 AACAGAAATTGAAAATAC-CTCA--G-C-GT--GTC--CGAGGCTC-A-ACTCACCTC-T----C
*
49016793 GCAATATGAGTTGATTTTTGAAA
50 GCAATATGAGTTGATTTTTGACA
* * *
49016816 AACAGAAATTTAAAAATACCTCAGCGCGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
49016881 TTTTATTTTACG
64 --TT-TTTGACA
* * *
49016893 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGA-GCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
49016957 ATTTTTGACA
63 ATTTTTGACA
*
49016967 AACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
49017031 TTTGAAA
66 TTTGACA
*
49017038 AACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
49017103 TTTTTTACG
64 TTTTTGACA
49017112 AACAGAAATTGAAAA
1 AACAGAAATTGAAAA
49017127 ACAGAAATTG
Statistics
Matches: 547, Mismatches: 97, Indels: 90
0.75 0.13 0.12
Matches are distributed among these distances:
69 6 0.01
70 36 0.07
71 44 0.08
72 118 0.22
73 39 0.07
74 89 0.16
75 52 0.10
76 22 0.04
77 44 0.08
78 5 0.01
79 45 0.08
80 2 0.00
81 4 0.01
82 2 0.00
84 15 0.03
85 7 0.01
86 4 0.01
87 4 0.01
88 3 0.01
89 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (72 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGACA
Found at i:49017015 original size:379 final size:374
Alignment explanation
Indices: 49016194--49017494 Score: 1405
Period size: 379 Copynumber: 3.4 Consensus size: 374
49016184 AAAGTAGAAA
* * * *
49016194 TTGAAAAGCAGAAATTGAAAATACCTCAGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATGTGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCGAGGCTCAACTCACCTCTCGCAATATGA
*
49016259 GTTGA-TTTTTTGATAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCT
66 GTTGATTTTTTTGAT---AATA-AA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* *
49016323 CTCGCAATATGAGTTGATGTTTTTGAAAAACAGAAATTGAAGAACAAAAATGGAAAACACCTCAG
126 CTCGCAATATGAGTTGA--TTTTTG-AAAA-AGAAATTGAAAAACAAAAATTGAAAACACCTCAG
** * * *
49016388 CGT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAA
187 CGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAA
** * * *
49016452 ATACCTCAATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGACTTGATTTTTGACAAACA-A
250 ATACCTCAGCGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTTGACAAACAGA
* * * **
49016516 AATTGAAATTACCTCAGC-GT--CTTGAGGTTCAACTCACCTCTTGCAATATGAGCTGATTTTTT
315 AATTGAAATTACCTCAGCTGTGAC-CGA-GCTCAACTCACCTCTCGCAATATGAG-T--TAATTT
* * *
49016578 TTTAAAAGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGT--ACCGAGGCTCAACTCACCTCTCGCAATA
* ** * *
49016643 TGAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCT
63 TGAGTTGATTTTTTTGATAATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
49016708 CGCAATATGAGTTGA-TTTTGAAAAATAAATT-AAAACACAAAAATTGACAATACCTCAGCGTGC
128 CGCAATATGAGTTGATTTTTGAAAAAGAAATTGAAAA-ACAAAAATTGAAAACACCTCAGCGTG-
*
49016771 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
191 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTGAAAATACC
* * * *
49016836 TCAGCGCGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTATTTTACGAACAGAAA
255 TCAGCGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGA--TT-TTTGACAAACAGAAA
**
49016901 TTGAAAAGACCTCAGCATGTGAGCCGAGCTCAACTCACCTCTCGCAATATGAGTTAATTT
317 TTGAAATTACCTCAGC-TGTGA-CCGAGCTCAACTCACCTCTCGCAATATGAGTTAATTT
* *
49016961 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCGAGGCTCAACTCACCTCTCGCAATATGA
*** * * *
49017025 GTTGA-TTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTTTGATA-ATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * * *
49017089 CAATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGT
130 CAATATGAGTTGA-TTTTTGA--AAAAGAAATTGAAAAACAAAAATTGAAAACACCTCAGC--GT
* * * * *
49017154 GAGCCGAGGCTTAACTCACCTCTCGCAATAGGAGTTGATTTTTGACAAACAGAAATTGAAATTAC
190 G-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATAC
*
49017219 CTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATT
254 CTCAGCGTGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATT
* *
49017283 GAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
319 GAAATTACCTCAGCTGTGACC-GA-GCTCAACTCACCTCTCGCAATATGAGTTAATTT
* * * *
49017340 TAAAAACAGAAATTAAAAACCAGAAA-TGAAAATA-CTCAGTGTG-AGCCAAGGCTGAACTCACC
1 T-----------TGAAAAA-CAGAAATTGAAAATACCTCAGCGTGTA-CCGAGGCTCAACTCACC
* * * **
49017402 TCTTGCAATATGAG-TAATTTTTATGA-ACATAAATT-AAACCACCTCAGCGTGTCCTGAGGCTC
53 TCTCGCAATATGAGTTGATTTTTTTGATA-ATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
49017464 AACTCACCTCTCGCAATATGAGTTGATTTTT
117 AACTCACCTCTCGCAATATGAGTTGATTTTT
49017495 TTGAAAATCA
Statistics
Matches: 783, Mismatches: 92, Indels: 81
0.82 0.10 0.08
Matches are distributed among these distances:
377 5 0.01
378 54 0.07
379 174 0.22
380 64 0.08
381 8 0.01
382 34 0.04
383 105 0.13
384 63 0.08
385 82 0.10
386 24 0.03
387 40 0.05
388 61 0.08
389 18 0.02
390 45 0.06
391 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (374 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTACCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGATAATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAAGAAATTGAAAAACAAAAATTGAAAACACCTCAGCGTGCCCGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
TGTCTTGAGGCTCAACTAACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTA
CCTCAGCTGTGACCGAGCTCAACTCACCTCTCGCAATATGAGTTAATTT
Found at i:49017017 original size:307 final size:303
Alignment explanation
Indices: 49016439--49017509 Score: 1089
Period size: 307 Copynumber: 3.5 Consensus size: 303
49016429 TTTTTGAAAG
** * ** * * *
49016439 ACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGACTTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* * * * *
49016504 TTTGACAAACA-AAATTGAAATTACCTCA--GCGTCTTGAGGTTCAACTCACCTCTTGCAATATG
66 TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
49016566 AGCTGATTTTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCA
131 AGTTGA-TTTTTTTTACAA-ACAGAAATTGAAAATACCTCAGC-TGTGAACCGAGGCTCAACTCA
*** ** * * ** * *
49016631 CCTCTCGCAATATGAGTTGATTTTT-TTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGC
193 CCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC-CGAGGC
49016695 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATAAATTAAAA
257 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA-AAATTAAAA
* * *
49016743 CACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 -ACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
49016808 TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGCGTCCTGAGGCTCAACTAACCTCTCGCAATA
65 TTTTGAAAAACAGAAA-TTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATA
* * *
49016873 TGAGTTGATTTTATTTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGA-GCTCAACTC
129 TGAGTTGATTTT-TTTTACAAACAGAAATTGAAAATACCTCAGC-TGTGAACCGAGGCTCAACTC
*
49016937 ACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGC
192 ACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGC
49017002 TCAACTCACCTCTCGCAATATGAGTTGATTTTG----------AAAA
257 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAATTAAAA
* * *
49017039 ACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* * * *
49017104 TTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAA
64 --TTT-----------TTGAAAAACAGAAATTGAAAATACCTCAGC--GCG-TCCTGAGGCTCAA
* * * *
49017168 CTCACCTCTCGCAATAGGAGTTGA--TTTTTGACAAACAGAAATTGAAATTACCTCAGC-GTG-T
113 CTCACCTCTCGCAATATGAGTTGATTTTTTTTACAAACAGAAATTGAAAATACCTCAGCTGTGAA
*
49017229 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAAATTACCT
178 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCT
*
49017293 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAACAGAAATTAAAA
242 CAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-A-AAATTAAAA
* * * * * *
49017358 ACCAGAAA-TGAAAATA-CTCAGTGTGAGCCAAGGCTGAACTCACCTCTTGCAATATGAG-TAAT
1 A-CAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** * ** *
49017420 TTTT-ATGAACATAAATT-AAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
65 TTTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATAT
*
49017483 GAGTTGATTTTTTTGA-AAATCAGAAAT
130 GAGTTGATTTTTTTTACAAA-CAGAAAT
49017510 AAAAACATCA
Statistics
Matches: 648, Mismatches: 74, Indels: 93
0.80 0.09 0.11
Matches are distributed among these distances:
295 58 0.09
296 4 0.01
297 2 0.00
298 34 0.05
299 6 0.01
300 25 0.04
301 10 0.02
302 2 0.00
305 66 0.10
306 46 0.07
307 150 0.23
308 82 0.13
309 57 0.09
310 14 0.02
311 32 0.05
312 2 0.00
313 3 0.00
317 2 0.00
318 35 0.05
319 12 0.02
320 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (303 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGAAAAACAGAAATTGAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTACAAACAGAAATTGAAAATACCTCAGCTGTGAACCGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAATTAAAA
Found at i:49017131 original size:14 final size:14
Alignment explanation
Indices: 49017112--49017140 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
49017102 TTTTTTTACG
49017112 AACAGAAATTGAAA
1 AACAGAAATTGAAA
49017126 AACAGAAATTGAAA
1 AACAGAAATTGAAA
49017140 A
1 A
49017141 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:49017183 original size:90 final size:87
Alignment explanation
Indices: 49017032--49017214 Score: 260
Period size: 90 Copynumber: 2.1 Consensus size: 87
49017022 TGAGTTGATT
* * *
49017032 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATAGGA
* *
49017097 GTTGATTTTTTTACGAACAGAAA
66 GTTGA-TTTTTGACAAACAGAAA
* *
49017120 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAATA
49017184 GGAGTTGATTTTTGACAAACAGAAA
63 GGAGTTGATTTTTGACAAACAGAAA
49017209 TTGAAA
1 TTGAAA
49017215 TTACCTCAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
88 28 0.33
89 21 0.25
90 34 0.40
91 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (87 bp):
TTGAAAAACAGAAATTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATAGGA
GTTGATTTTTGACAAACAGAAA
Found at i:49017242 original size:163 final size:157
Alignment explanation
Indices: 49016961--49017358 Score: 502
Period size: 163 Copynumber: 2.6 Consensus size: 157
49016951 GAGTTAATTT
* ** * *
49016961 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGGCCGAGGCTCAACTCACCTCTCGCAATAGGAG
49017026 TTGATTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TTGATTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
49017091 ATATGAGTTGATTTTTTTACGAACAGAAA
131 ATATGAGTTGA--TTTTGACAAACAGAAA
*
49017120 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATAG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGC--GTG-GCCGAGGCTCAACTCACCTCTCGCAATAG
* * * *
49017185 GAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT
63 GAGTTGA-TTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
49017250 CGCAATATGAGTTGATTTTGACAAACAGAAA
127 CGCAATATGAGTTGATTTTGACAAACAGAAA
* *
49017281 TT--------GAAATT------ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGGCC-GAGGCTCAACTCACCTCTCGCAATAGGA
49017332 GTTGATTTT-AAAAACAGAAATTAAAAA
65 GTTGATTTTGAAAAACAGAAATTAAAAA
49017359 CCAGAAATGA
Statistics
Matches: 216, Mismatches: 18, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
143 15 0.07
144 6 0.03
145 34 0.16
147 8 0.04
153 6 0.03
159 27 0.12
161 19 0.09
162 33 0.15
163 68 0.31
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (157 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGGCCGAGGCTCAACTCACCTCTCGCAATAGGAG
TTGATTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTGACAAACAGAAA
Found at i:49017299 original size:72 final size:72
Alignment explanation
Indices: 49017120--49017493 Score: 360
Period size: 72 Copynumber: 5.0 Consensus size: 72
49017110 CGAACAGAAA
* ** * *
49017120 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCACCTCTCGCAATA
1 TTGACAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
49017184 GGAGTTGATTT
63 TGAGTTGA-TT
*
49017195 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
49017260 GTTGATT
66 GTTGATT
49017267 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
49017332 GTTGATT
66 GTTGATT
* * * * ** ** *
49017339 TT-AAAAACAGAAATTAAAAACCAGAAATGAAAATACTCAGTGTGAGCCAAGGCTGAACTCACCT
1 TTGACAAACAGAAATT--------GAAAT---TA-CCTCAGCGTGTCCTGAGGCTCAACTCACCT
* *
49017403 CTTGCAATATGAG-TAATT
54 CTCGCAATATGAGTTGATT
* ** * **
49017421 TTTATGAACATAAATT-AAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
49017485 GTTGATT
66 GTTGATT
49017492 TT
1 TT
49017494 TTTGAAAATC
Statistics
Matches: 251, Mismatches: 33, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
70 35 0.14
71 19 0.08
72 76 0.30
73 34 0.14
74 3 0.01
75 27 0.11
79 5 0.02
82 7 0.03
83 45 0.18
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (72 bp):
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATT
Done.