Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 156 of 222
Found at i:50216257 original size:50 final size:50
Alignment explanation
Indices: 50216176--50216277 Score: 152
Period size: 50 Copynumber: 2.0 Consensus size: 50
50216166 GAAATTCTAA
50216176 ATGCATTAAAAGAACCCTACTACAAACTTACTTGCATTGCTACTGAA-GTT
1 ATGCATTAAAAGAACCCTACTACAAACTTACTTGCATTGCTACT-AAGGTT
* * * *
50216226 ATGCATTAAAAGAACCCTACTACAGATTTACTTGTATTGTTACTAAGGTT
1 ATGCATTAAAAGAACCCTACTACAAACTTACTTGCATTGCTACTAAGGTT
50216276 AT
1 AT
50216278 TCTACTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
49 2 0.04
50 45 0.96
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (50 bp):
ATGCATTAAAAGAACCCTACTACAAACTTACTTGCATTGCTACTAAGGTT
Found at i:50220163 original size:41 final size:41
Alignment explanation
Indices: 50220103--50220339 Score: 145
Period size: 41 Copynumber: 5.8 Consensus size: 41
50220093 AAGAATAATG
*
50220103 ATGAATTGCATATACGTGCCCCTGTTTATA-TTTCGATACCC
1 ATGAATTGCACATACGTGCCCCTGTTTATACTTT-GATACCC
* * *
50220144 ATGAATTGCACATATGTGCCCCTGTTTGTACTTTGGTACCC
1 ATGAATTGCACATACGTGCCCCTGTTTATACTTTGATACCC
* * * * * * * *
50220185 TTGAGTTGCACATACATGCCCTTTTTTGTACTTCGGT-CCC
1 ATGAATTGCACATACGTGCCCCTGTTTATACTTTGATACCC
* * * * * * * * *
50220225 CTAAATTTCATAGACATGCCCCTATTTGTACTTTGGTACCC
1 ATGAATTGCACATACGTGCCCCTGTTTATACTTTGATACCC
* * * * * * * *
50220266 CTAAATTACACATACATGCCCATATTTGTACATTGATACCC
1 ATGAATTGCACATACGTGCCCCTGTTTATACTTTGATACCC
* * * * *
50220307 TTGAATTGCACAGACATGCCCCGGTTTCTACTT
1 ATGAATTGCACATACGTGCCCCTGTTTATACTT
50220340 ACGTACCCCT
Statistics
Matches: 159, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
40 31 0.19
41 125 0.79
42 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (41 bp):
ATGAATTGCACATACGTGCCCCTGTTTATACTTTGATACCC
Found at i:50223898 original size:33 final size:33
Alignment explanation
Indices: 50223856--50223919 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
50223846 TGAATAAGGA
50223856 ACGACATGCATGAATATGAATTGATTATGCTGG
1 ACGACATGCATGAATATGAATTGATTATGCTGG
50223889 ACGACATGCATGAATATGAATTGATTATGCT
1 ACGACATGCATGAATATGAATTGATTATGCT
50223920 ATGTTTAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (33 bp):
ACGACATGCATGAATATGAATTGATTATGCTGG
Found at i:50227205 original size:12 final size:13
Alignment explanation
Indices: 50227188--50227216 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50227178 CTCATACATG
50227188 AATAAATAAA-GC
1 AATAAATAAATGC
50227200 AATAAATAAATGC
1 AATAAATAAATGC
50227213 AATA
1 AATA
50227217 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:50232105 original size:99 final size:99
Alignment explanation
Indices: 50231985--50232183 Score: 353
Period size: 99 Copynumber: 2.0 Consensus size: 99
50231975 CATGTATGGT
50231985 TTATCTTTAAACAAGAATCATTACTCCAAACAGAAAGTCATTTTGACGATGTTGCTATTATATCT
1 TTATCTTTAAACAAGAATCATTACTCCAAACAGAAAGTCATTTTGACGATGTTGCTATTATATCT
*
50232050 TGTGGTTGGGGCTACGTTAAAAAATGTTTTTGAC
66 TGTGGTTGGGGCTACATTAAAAAATGTTTTTGAC
*
50232084 TTATCTTTAAACAAGAATCATTGCTCCAAACAGAAAGTCATTTTGACGATGTTGCTATTATATCT
1 TTATCTTTAAACAAGAATCATTACTCCAAACAGAAAGTCATTTTGACGATGTTGCTATTATATCT
* * *
50232149 TGTGGTTGGGGTTGCATTAAAGAATGTTTTTGAC
66 TGTGGTTGGGGCTACATTAAAAAATGTTTTTGAC
50232183 T
1 T
50232184 GAGCAGCACC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (99 bp):
TTATCTTTAAACAAGAATCATTACTCCAAACAGAAAGTCATTTTGACGATGTTGCTATTATATCT
TGTGGTTGGGGCTACATTAAAAAATGTTTTTGAC
Found at i:50246454 original size:19 final size:22
Alignment explanation
Indices: 50246405--50246458 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 22
50246395 ATATTATTAA
50246405 ATTAATTTTAAAATAATTATTT
1 ATTAATTTTAAAATAATTATTT
*
50246427 ATGAA--TTAAAA-AA-T-TTT
1 ATTAATTTTAAAATAATTATTT
50246444 ATTAATTTTAAAATA
1 ATTAATTTTAAAATA
50246459 GAATTATTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
17 7 0.26
18 1 0.04
19 8 0.30
20 7 0.26
22 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTAATTTTAAAATAATTATTT
Found at i:50248154 original size:24 final size:24
Alignment explanation
Indices: 50248126--50248178 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
50248116 TTTCTAGAAG
*
50248126 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
* *
50248150 ATTTAGCATTTATTAGTATAGTTT
1 ATTTAGCATTTATTAGTATAATAT
50248174 ATTTA
1 ATTTA
50248179 ACTTACTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:50257015 original size:14 final size:15
Alignment explanation
Indices: 50256995--50257030 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
50256985 TTTACATGTA
50256995 ATTTTAAA-TGATTT
1 ATTTTAAATTGATTT
*
50257009 TTTTTAAATTGATTT
1 ATTTTAAATTGATTT
50257024 ATTTTAA
1 ATTTTAA
50257031 TTCGTTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTTTAAATTGATTT
Found at i:50261707 original size:33 final size:34
Alignment explanation
Indices: 50261647--50261710 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
50261637 AATAAGATAA
* *
50261647 AAAAATAAAAGTATGTATATGTGTATATATTTAC
1 AAAAATAAAAGAATGTATATGTATATATATTTAC
50261681 AAAAATAAAA-AATGTAT-TAGTATATATATT
1 AAAAATAAAAGAATGTATAT-GTATATATATT
50261711 GGTAAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 1 0.04
33 16 0.59
34 10 0.37
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (34 bp):
AAAAATAAAAGAATGTATATGTATATATATTTAC
Found at i:50261771 original size:21 final size:22
Alignment explanation
Indices: 50261722--50261775 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
50261712 GTAAATCATG
**
50261722 AAAATATGTATATGTATATATTT
1 AAAATATGTATA-GTATATAAGT
50261745 AAAATATGTATA-TATATAAGT
1 AAAATATGTATAGTATATAAGT
*
50261766 ATAATATGTA
1 AAAATATGTA
50261776 CATAACAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 16 0.57
23 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (22 bp):
AAAATATGTATAGTATATAAGT
Found at i:50262182 original size:3 final size:3
Alignment explanation
Indices: 50262174--50262217 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
50262164 TGTGTATAGA
*
50262174 AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50262218 GATGCAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:50264039 original size:45 final size:45
Alignment explanation
Indices: 50263979--50264433 Score: 622
Period size: 45 Copynumber: 10.1 Consensus size: 45
50263969 GGAGATAAGG
* * *
50263979 CTGCTATCCTCGATCTACTTCGCTACCAATATAGGAAGATAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * * * *
50264024 CTGCTGTCTTTGATCTACTTCACTGCCAATACAGGAAAACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * *
50264069 ATGTTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* *
50264114 CTGCTATCTTTGATCTACTTCGCTACTAGTATAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
*
50264159 CTGTTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * * *
50264204 CTGCTATCTTTGATCTACTTCGCTGCCGATACAGGAAGAAAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * *
50264249 CTGTTATCTTCGATCTACTTTGCTACCAATATAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * * * *
50264294 CTGCTATCTTTGATTTACTTCACTGCCAATATAGGAAGAAAAGAA
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
** *
50264339 CTATTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
* * *
50264384 CTGCTATCTTTGATCTACTTTGTTACCAATACAGGAAGACAAGAT
1 CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
50264429 CTGCT
1 CTGCT
50264434 GTTTTCAACC
Statistics
Matches: 352, Mismatches: 58, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 352 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (45 bp):
CTGCTATCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGAT
Found at i:50276269 original size:33 final size:34
Alignment explanation
Indices: 50276209--50276272 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
50276199 AATAAGATAA
* *
50276209 AAAAATAAAAGTATGTATATGTGTATATATTTAC
1 AAAAATAAAAGAATGTATATGTATATATATTTAC
50276243 AAAAATAAAA-AATGTAT-TAGTATATATATT
1 AAAAATAAAAGAATGTATAT-GTATATATATT
50276273 GGTAAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 1 0.04
33 16 0.59
34 10 0.37
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (34 bp):
AAAAATAAAAGAATGTATATGTATATATATTTAC
Found at i:50276333 original size:21 final size:22
Alignment explanation
Indices: 50276284--50276333 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
50276274 GTAAATCATG
**
50276284 AAAATACGTATATGTATATATTT
1 AAAATACGTATA-GTATATAAGT
50276307 AAAATACGTATA-TATATAAGT
1 AAAATACGTATAGTATATAAGT
*
50276328 ATAATA
1 AAAATA
50276334 TGTACATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.50
23 12 0.50
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (22 bp):
AAAATACGTATAGTATATAAGT
Found at i:50276713 original size:22 final size:21
Alignment explanation
Indices: 50276667--50276713 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 21
50276657 TTGTATAGTG
*
50276667 TATGAATATATATTATAAAAA
1 TATGCATATATATTATAAAAA
50276688 -ATGCATATATATTATAAAACA
1 TATGCATATATATTATAAAA-A
50276709 TATGC
1 TATGC
50276714 GTGTGTATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 18 0.78
21 1 0.04
22 4 0.17
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.36
Consensus pattern (21 bp):
TATGCATATATATTATAAAAA
Found at i:50276733 original size:3 final size:3
Alignment explanation
Indices: 50276725--50276800 Score: 73
Period size: 3 Copynumber: 24.3 Consensus size: 3
50276715 TGTGTATAGA
*
50276725 AAT AAT AAT GAT AAT AAT AAT AAT AAAT AAT AAAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT
* * *
50276771 AAT AAT GAT GCAAT AAC AAT ATT AAT AAT A
1 AAT AAT AAT --AAT AAT AAT AAT AAT AAT A
50276801 TAAAAAACTA
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 2 0.03
3 50 0.83
4 6 0.10
5 2 0.03
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50276752 original size:25 final size:25
Alignment explanation
Indices: 50276725--50276775 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
50276715 TGTGTATAGA
*
50276725 AATAAT-AATGATAATAATAATAATA
1 AATAATAAATAATAAT-ATAATAATA
50276750 AATAATAAATAATAATATAATAATA
1 AATAATAAATAATAATATAATAATA
50276775 A
1 A
50276776 TGATGCAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (25 bp):
AATAATAAATAATAATATAATAATA
Found at i:50276785 original size:14 final size:11
Alignment explanation
Indices: 50276725--50276803 Score: 69
Period size: 11 Copynumber: 7.2 Consensus size: 11
50276715 TGTGTATAGA
50276725 AATAATAATGAT
1 AATAATAAT-AT
50276737 AATAAT-A-AT
1 AATAATAATAT
50276746 AATAAATAATA-
1 AAT-AATAATAT
50276757 AATAATAATAT
1 AATAATAATAT
50276768 AATAATAATGAT
1 AATAATAAT-AT
*
50276780 GCAATAACAATAT
1 --AATAATAATAT
50276793 --TAATAATAT
1 AATAATAATAT
50276802 AA
1 AA
50276804 AAAACTAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 19
0.73 0.03 0.25
Matches are distributed among these distances:
9 13 0.23
10 10 0.18
11 14 0.25
12 9 0.16
13 2 0.04
14 8 0.14
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (11 bp):
AATAATAATAT
Found at i:50286917 original size:44 final size:45
Alignment explanation
Indices: 50286857--50286979 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 45
50286847 AGAGTAGATC
* * * *
50286857 ATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCA-AGTTGAAG
1 ATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAG
* *
50286902 TTA-C-AAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAG
1 ATAGCGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
*
50286946 ATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGA
1 ATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGA
50286980 ACTGATAGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
43 2 0.03
44 34 0.52
45 28 0.42
46 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
ATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
Found at i:50286948 original size:181 final size:182
Alignment explanation
Indices: 50286687--50287112 Score: 508
Period size: 181 Copynumber: 2.4 Consensus size: 182
50286677 AGCCAATAAT
* * * ** * *
50286687 CTTATCTCCATAAAGTTGCAGTAGAGCGGATTGAAG---TGAAGTTTTATCTTCCTGAAGTTGCA
1 CTTATATCCATAAAGTTGCAGTGGAGCAGATTGAAGAAACCAAGTCTTATCTCCCTGAAGTTGCA
* * *
50286749 GTGGAGCAGACTGAAGATAGCAAATGTTATTCCCCTGAAGTGGCAGCGGAA-TAGGTTAG-AGCT
66 GTAGAGCAGACTGAAGATAGCAAATCTTATTCCCCTGAAGTGGCAGCGGAACT--GATAGAAGCT
* * *
50286812 ATAAATTGCAGATCTTATCTCTCTGAAGTTACAATAGAGTAGATCATAGCAAAC
129 ATAAATTACAGATCTTATCTCTCTAAAGTTACAATAGAGCAGATCATAGCAAAC
* * * * **
50286866 CTTATCTCCCTGAAGTTGTAGTGGAGCA-AGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGC
1 CTTATATCCATAAAGTTGCAGTGGAGCAGA-TTGAAGAAACCAAGTCTTATCTCCCTGAAGTTGC
* * * *
50286929 AGTAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACTGATAGAAGCTA
65 AGTAGAGCAGACTGAAGATAGCAAATCTTATTCCCCTGAAGTGGCAGCGGAACTGATAGAAGCTA
* ** * *
50286994 TAAATTATAGATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATCATATCAAAC
130 TAAATTACAGATCTTATCTCTCTAAAGTTACAATAGAGCAGATCATAGCAAAC
*
50287047 CTTATATCCATAAAGTTGCAGTGGAGCAGATTGAAGAAACCAA-TCCTATCTCCCTGAAGTTGCA
1 CTTATATCCATAAAGTTGCAGTGGAGCAGATTGAAGAAACCAAGTCTTATCTCCCTGAAGTTGCA
50287111 GT
66 GT
50287113 GGAGTGAATT
Statistics
Matches: 209, Mismatches: 30, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
178 1 0.00
179 29 0.14
180 4 0.02
181 170 0.81
182 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (182 bp):
CTTATATCCATAAAGTTGCAGTGGAGCAGATTGAAGAAACCAAGTCTTATCTCCCTGAAGTTGCA
GTAGAGCAGACTGAAGATAGCAAATCTTATTCCCCTGAAGTGGCAGCGGAACTGATAGAAGCTAT
AAATTACAGATCTTATCTCTCTAAAGTTACAATAGAGCAGATCATAGCAAAC
Found at i:50287163 original size:129 final size:136
Alignment explanation
Indices: 50286922--50287180 Score: 334
Period size: 129 Copynumber: 1.9 Consensus size: 136
50286912 TATCTCCCTG
* * * *
50286922 AAGTTGCAGTAGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACTGATA
1 AAGTTGCAGTAGAGCAGACTGAAGATAACCAATCCTATCTCCCTGAAGTTGCAGTGGAAC-GATA
* * * *
50286987 GAAGCTATAAATTATAGATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATCATATCAAACCTTAT
65 GAAGCTATAAATGATAGATCTTATCTCTCTAAAGTTGCAATAGAGCAGATCACATCAAACCTTAT
50287052 ATCCATA
130 ATCCATA
* *
50287059 AAGTTGCAGTGGAGCAGATTGAAGA-AACCAATCCTATCTCCCTGAAGTTGCAGTGG-A-G-T-G
1 AAGTTGCAGTAGAGCAGACTGAAGATAACCAATCCTATCTCCCTGAAGTTGCAGTGGAACGATAG
* * * *
50287119 AA-TTA-AAATGATGGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCACATCAGACCTTAT
66 AAGCTATAAATGATAGATCTTATCTCTCTAAAGTTGCAATAGAGCAGATCACATCAAACCTTAT
50287181 TTCCTTGAAA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
129 50 0.46
130 2 0.02
131 3 0.03
132 1 0.01
133 1 0.01
135 1 0.01
136 27 0.25
137 23 0.21
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (136 bp):
AAGTTGCAGTAGAGCAGACTGAAGATAACCAATCCTATCTCCCTGAAGTTGCAGTGGAACGATAG
AAGCTATAAATGATAGATCTTATCTCTCTAAAGTTGCAATAGAGCAGATCACATCAAACCTTATA
TCCATA
Found at i:50288791 original size:24 final size:24
Alignment explanation
Indices: 50288754--50288957 Score: 82
Period size: 24 Copynumber: 8.5 Consensus size: 24
50288744 TTATCAATAC
50288754 TATTTT-AATATTATAATATATTAT
1 TATTTTAAAT-TTATAATATATTAT
* * **
50288778 TATTCTAAATTTATCAT-TAACAT
1 TATTTTAAATTTATAATATATTAT
** * * *
50288801 TATTTTAGGTTTATCATGTATTTT
1 TATTTTAAATTTATAATATATTAT
*
50288825 TA-TTTAAAGTTA-ACATATATTAT
1 TATTTTAAATTTATA-ATATATTAT
*
50288848 TATTTTGAATTTATCACGTATTATTATTAT
1 TATTTTAAATTTAT-A---A-TA-TATTAT
* * *
50288878 TTTTTTAAA-TTATCATA-A-AAT
1 TATTTTAAATTTATAATATATTAT
* *
50288899 T-TTTTAAATTTATGATGTATTAT
1 TATTTTAAATTTATAATATATTAT
** * *
50288922 TATTCCAAATTTATTATATATTGTT
1 TATTTTAAATTTATAATATATT-AT
*
50288947 TATTGTAAATT
1 TATTTTAAATT
50288958 ACTCTATTCA
Statistics
Matches: 132, Mismatches: 33, Indels: 29
0.68 0.17 0.15
Matches are distributed among these distances:
20 7 0.05
21 9 0.07
22 2 0.02
23 37 0.28
24 42 0.32
25 14 0.11
26 1 0.01
28 1 0.01
29 6 0.05
30 13 0.10
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTTTAAATTTATAATATATTAT
Found at i:50290137 original size:23 final size:25
Alignment explanation
Indices: 50290095--50290140 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
50290085 ATATCGGTGG
*
50290095 CGACTCTAATTTTTATTTTTTAAGT
1 CGACTCTAATTTTTAGTTTTTAAGT
50290120 CGACTCT-ATTTTT-GTTTTTAA
1 CGACTCTAATTTTTAGTTTTTAA
50290141 AAAGTGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.57
Consensus pattern (25 bp):
CGACTCTAATTTTTAGTTTTTAAGT
Found at i:50293076 original size:15 final size:16
Alignment explanation
Indices: 50293056--50293089 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
50293046 AAGACAATTG
50293056 AAATTCAAATCC-AGA
1 AAATTCAAATCCTAGA
*
50293071 AAATTCTAATCCTAGA
1 AAATTCAAATCCTAGA
50293087 AAA
1 AAA
50293090 GACAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.24
Consensus pattern (16 bp):
AAATTCAAATCCTAGA
Found at i:50295483 original size:101 final size:101
Alignment explanation
Indices: 50295359--50295559 Score: 357
Period size: 101 Copynumber: 2.0 Consensus size: 101
50295349 CTTGATAAAT
*
50295359 AAAAAATCGAACATGGTGGTAAGGATCATCGAAGATTATGAACGACGCCAAAAATATCTAATATA
1 AAAAAATCGAACATGGTGGTAAGGATCATCAAAGATTATGAACGACGCCAAAAATATCTAATATA
*
50295424 TCACACAAGTAGAGACAATGAATAGATTTAAGTTAC
66 TCACAAAAGTAGAGACAATGAATAGATTTAAGTTAC
* **
50295460 AAAAAATTGAACATGGTGGTAAGGATCATCAAAGATTATGAGTGACGCCAAAAATATCTAATATA
1 AAAAAATCGAACATGGTGGTAAGGATCATCAAAGATTATGAACGACGCCAAAAATATCTAATATA
50295525 TCACAAAAGTAGAGACAATGAATAGATTTAAGTTA
66 TCACAAAAGTAGAGACAATGAATAGATTTAAGTTA
50295560 TAAACATAAA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 95 1.00
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAAATCGAACATGGTGGTAAGGATCATCAAAGATTATGAACGACGCCAAAAATATCTAATATA
TCACAAAAGTAGAGACAATGAATAGATTTAAGTTAC
Found at i:50295595 original size:101 final size:99
Alignment explanation
Indices: 50295375--50295580 Score: 268
Period size: 101 Copynumber: 2.0 Consensus size: 99
50295365 TCGAACATGG
* *
50295375 TGGTAAGGATCATCGAAGATTATGAACGACGCCAAAAATATCTAATATATCACACAAGTAGAGAC
1 TGGTAAGGA-CA-CAAAGATTATGAACGACGCCAAAAATATCTAATATATCACAAAAGTAGAGAC
* ** * *
50295440 AATGAATAGATTTAAGTTACAAAAAATTGAACATGG
64 AATGAATAGATTTAAGTTAAAAAAAATAAAAAATGA
**
50295476 TGGTAAGGATCATCAAAGATTATGAGTGACGCCAAAAATATCTAATATATCACAAAAGTAGAGAC
1 TGGTAAGGA-CA-CAAAGATTATGAACGACGCCAAAAATATCTAATATATCACAAAAGTAGAGAC
50295541 AATGAATAGATTTAAGTTATAAACATAAATAAAAAATGA
64 AATGAATAGATTTAAGTTA-AAA-A-AAATAAAAAATGA
50295580 T
1 T
50295581 ATGTGAAGAA
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
101 80 0.86
102 2 0.02
103 1 0.01
104 10 0.11
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.25
Consensus pattern (99 bp):
TGGTAAGGACACAAAGATTATGAACGACGCCAAAAATATCTAATATATCACAAAAGTAGAGACAA
TGAATAGATTTAAGTTAAAAAAAATAAAAAATGA
Found at i:50304085 original size:40 final size:39
Alignment explanation
Indices: 50304001--50304181 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 39
50303991 TTGAATGATG
* * * *
50304001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50304041 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
50304081 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50304120 TCCGGGTTAAGTCCCGAAGGCAATTGTCCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
50304161 -CCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGT-CCGAAGGCA
50304182 ATTGAACGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50304137 original size:79 final size:81
Alignment explanation
Indices: 50304001--50304181 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
50303991 TTGAATGATG
* *
50304001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
50304065 TGTGCGAGATACTA-A
66 TGTCCGAGATACTATA
* * * **
50304080 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
50304142 ATTGTCCGAGTTACTATA
64 ATTGTCCGAGATACTATA
* *
50304160 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
50304182 ATTGAACGAG
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.65
80 29 0.34
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTCCGAGATACTATA
Found at i:50304207 original size:79 final size:79
Alignment explanation
Indices: 50304054--50304218 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
50304044 GGACTAAGAT
* * * * **
50304054 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTGAACGAGTTACTAA
*
50304119 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50304133 CCGAAGGCAATTGTCCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAATTGAACGAG-TAGC
1 CCGAAGGCAATTGTCCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAATTGAACGAGTTA-C
* *
50304196 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50304212 CCGAAGG
1 CCGAAGG
50304219 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50318457 original size:20 final size:20
Alignment explanation
Indices: 50318434--50318485 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
50318424 AATCAAGTGC
50318434 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
*
50318454 AAATGATTTTAACCAAGTTA
1 AAATGATTTTAACCAAGTCA
*
50318474 AAATCATTTTAA
1 AAATGATTTTAA
50318486 AATGATTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:50320714 original size:16 final size:16
Alignment explanation
Indices: 50320693--50320726 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50320683 TGATTAGACC
50320693 ATACACCATTCACACT
1 ATACACCATTCACACT
*
50320709 ATACACCATTCACGCT
1 ATACACCATTCACACT
50320725 AT
1 AT
50320727 GCCGCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (16 bp):
ATACACCATTCACACT
Found at i:50325652 original size:18 final size:17
Alignment explanation
Indices: 50325624--50325686 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 17
50325614 TTGATACATA
50325624 TTTTATTATTTAATTT-C
1 TTTTATTATTT-ATTTAC
50325641 TTTTATTTATTTATTTAC
1 TTTTA-TTATTTATTTAC
*
50325659 TTTT-CT-TTTATTT-C
1 TTTTATTATTTATTTAC
*
50325673 CTTTATTA-TTATTT
1 TTTTATTATTTATTT
50325687 TTAGTATAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 4 0.10
15 14 0.36
16 1 0.03
17 9 0.23
18 11 0.28
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTATTTAC
Found at i:50325667 original size:23 final size:21
Alignment explanation
Indices: 50325625--50325671 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 21
50325615 TGATACATAT
50325625 TTTATTATTTAATTTCTTTTA
1 TTTATTATTTAATTTCTTTTA
*
50325646 TTTATTTATTTACTTTTCTTTTA
1 TTTA-TTATTTA-ATTTCTTTTA
50325669 TTT
1 TTT
50325672 CCTTTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 7 0.30
23 12 0.52
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTATTATTTAATTTCTTTTA
Found at i:50328885 original size:80 final size:80
Alignment explanation
Indices: 50328733--50328925 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
50328723 CGGTTTTAGT
* * *
50328733 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
50328798 AACCCGGATTTA-AC
66 AACCCGGATATATAC
** *
50328812 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
50328876 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
50328893 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
50328926 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 11 0.11
80 80 0.82
81 6 0.06
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:50328886 original size:40 final size:40
Alignment explanation
Indices: 50328703--50328872 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
50328693 TCCTCGTTCA
* * * ** *
50328703 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
50328742 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
50328782 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
50328822 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
50328862 AAGGCCTTCGG
1 AATGCCTTCGG
50328873 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.28
40 86 0.72
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:50328925 original size:120 final size:119
Alignment explanation
Indices: 50328703--50328925 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
50328693 TCCTCGTTCA
* * * *
50328703 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
50328768 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * **
50328822 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* *
50328886 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
50328926 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:50328934 original size:41 final size:41
Alignment explanation
Indices: 50328857--50328934 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50328847 TTAGTATCTC
* * *
50328857 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50328898 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50328935 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50336574 original size:27 final size:27
Alignment explanation
Indices: 50336543--50336720 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
50336533 TAAATTGTAC
50336543 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50336570 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50336596 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50336624 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
50336652 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50336679 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50336706 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50336721 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50336657 original size:82 final size:81
Alignment explanation
Indices: 50336544--50336699 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
50336534 AAATTGTACA
*
50336544 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
50336608 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50336625 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
50336690 TGCGAGTTGA
65 TGCGAATTGA
50336700 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50336711 original size:82 final size:81
Alignment explanation
Indices: 50336540--50336720 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
50336530 GATTAAATTG
*
50336540 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
50336605 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50336621 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
50336685 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50336703 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50336721 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50340773 original size:19 final size:20
Alignment explanation
Indices: 50340731--50340773 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
50340721 ACTGTTTTGT
*
50340731 TATGGGCCAACTGTATTGAA
1 TATGGCCCAACTGTATTGAA
*
50340751 -ATGGCCCAACTGTGTT-AA
1 TATGGCCCAACTGTATTGAA
50340769 TATGG
1 TATGG
50340774 GCAAGGCCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (20 bp):
TATGGCCCAACTGTATTGAA
Found at i:50340867 original size:59 final size:60
Alignment explanation
Indices: 50340768--50340905 Score: 147
Period size: 59 Copynumber: 2.3 Consensus size: 60
50340758 AACTGTGTTA
* * * * *
50340768 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACGGCCCGGATTGAT-CTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
* * * *
50340827 ATATGGGCTAGGCCCAGTATA-CTCTGATATTGTAA-GGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAATAGGGCTACGGCCCAGATTAATACTG
50340887 ATATGGGCTAAGGCCCAGT
1 ATATGGGCT-AGGCCCAGT
50340906 TAACTCTAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
58 3 0.05
59 37 0.56
60 17 0.26
61 9 0.14
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:50343442 original size:43 final size:45
Alignment explanation
Indices: 50343379--50343469 Score: 159
Period size: 43 Copynumber: 2.1 Consensus size: 45
50343369 TTATATATTG
50343379 TTGATGATTTTAGTACGAGCTTACTAA-C-TTTTGAAAGCTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTTGAAAGCTTACT
*
50343422 TTGATGATTTTAGTATGAGCTTACTAAGCTTTTTGAAAGCTTACT
1 TTGATGATTTTAGTACGAGCTTACTAAGCTTTTTGAAAGCTTACT
50343467 TTG
1 TTG
50343470 TGTGTATGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 26 0.58
44 1 0.02
45 18 0.40
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (45 bp):
TTGATGATTTTAGTACGAGCTTACTAAGCTTTTTGAAAGCTTACT
Found at i:50355894 original size:40 final size:40
Alignment explanation
Indices: 50355807--50355975 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
50355797 TCCTCGTTCA
* * * ** *
50355807 AATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
50355845 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
50355885 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
50355925 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
50355965 AAGGCCTTCGG
1 AATGCCTTCGG
50355976 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 9 0.08
39 23 0.19
40 86 0.73
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:50355988 original size:40 final size:40
Alignment explanation
Indices: 50355805--50356027 Score: 222
Period size: 40 Copynumber: 5.7 Consensus size: 40
50355795 GCTCCTCGTT
* * * * *
50355805 CAAATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
50355844 C-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
50355883 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
50355923 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * * *
50355963 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
50356004 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50356028 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 9 0.06
39 37 0.23
40 107 0.66
41 8 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:50356036 original size:40 final size:41
Alignment explanation
Indices: 50355960--50356036 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
50355950 TTAGTATCTC
* * *
50355960 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50356001 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACA-CATTCA
50356037 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.34
40 14 0.44
41 7 0.22
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50382319 original size:35 final size:35
Alignment explanation
Indices: 50382273--50382344 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
50382263 GTCTTACTCA
*
50382273 TCATACCTTGTTGTCATAGAATTTTTCATCTATGG
1 TCATACCTTGTTGTCATAGAATCTTTCATCTATGG
*
50382308 TCATACCTTGTTGTCATAGCATCTTTCATCTATGG
1 TCATACCTTGTTGTCATAGAATCTTTCATCTATGG
50382343 TC
1 TC
50382345 TAACATCGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (35 bp):
TCATACCTTGTTGTCATAGAATCTTTCATCTATGG
Found at i:50385000 original size:27 final size:27
Alignment explanation
Indices: 50384970--50385121 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
50384960 ATATTAAGTC
* *
50384970 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50384997 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
50385025 CGCACACTTAGTGCTGCATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
50385052 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50385079 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
50385107 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50385122 GTACAATTTA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 69 0.61
28 44 0.39
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50385038 original size:55 final size:54
Alignment explanation
Indices: 50384970--50385121 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
50384960 ATATTAAGTC
* *
50384970 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * * *
50385025 CGCACACTTAGTGCTGCATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
50385079 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
50385122 GTACAATTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 24 0.28
55 62 0.72
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:50385107 original size:82 final size:82
Alignment explanation
Indices: 50384970--50385122 Score: 252
Period size: 82 Copynumber: 1.9 Consensus size: 82
50384960 ATATTAAGTC
* *
50384970 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
50385035 GTGCTGCATAGTCAATT
66 GTGCTGCATAGTCAATT
* * * *
50385052 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
50385117 GTGCTG
66 GTGCTG
50385123 TACAATTTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTGCATAGTCAATT
Found at i:50387714 original size:19 final size:19
Alignment explanation
Indices: 50387690--50387726 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50387680 TAATTTAGCC
50387690 ATATTTATTT-TTTAATTTA
1 ATATTT-TTTATTTAATTTA
50387709 ATATTTTTTATTTAATTT
1 ATATTTTTTATTTAATTT
50387727 TTACATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
ATATTTTTTATTTAATTTA
Found at i:50387715 original size:14 final size:13
Alignment explanation
Indices: 50387692--50387743 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
50387682 ATTTAGCCAT
50387692 ATTT-ATTTTTTA
1 ATTTAATTTTTTA
*
50387704 ATTTAATATTTTTT
1 ATTTAAT-TTTTTA
50387718 ATTTAA-TTTTTA
1 ATTTAATTTTTTA
50387730 CATTCTAATTTTTT
1 -ATT-TAATTTTTT
50387744 TGTTTGATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 9 0.27
13 5 0.15
14 14 0.42
15 5 0.15
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTAATTTTTTA
Found at i:50387715 original size:15 final size:14
Alignment explanation
Indices: 50387695--50387728 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
50387685 TAGCCATATT
50387695 TATTTTTTAATTTAA
1 TATTTTTT-ATTTAA
50387710 TATTTTTTATTTAA
1 TATTTTTTATTTAA
50387724 T-TTTT
1 TATTTT
50387729 ACATTCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 7 0.37
15 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TATTTTTTATTTAA
Found at i:50387721 original size:26 final size:27
Alignment explanation
Indices: 50387691--50387744 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
50387681 AATTTAGCCA
*
50387691 TATTTATTTTTTA-ATT-TAATATTTTT
1 TATTTAATTTTTACATTCTAAT-TTTTT
50387717 TATTTAATTTTTACATTCTAATTTTTT
1 TATTTAATTTTTACATTCTAATTTTTT
50387744 T
1 T
50387745 GTTTGATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 12 0.48
27 9 0.36
28 4 0.16
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (27 bp):
TATTTAATTTTTACATTCTAATTTTTT
Found at i:50398664 original size:19 final size:20
Alignment explanation
Indices: 50398640--50398680 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
50398630 ATGTAATTTG
50398640 TTAAGA-ATAAATTTTCTAA
1 TTAAGACATAAATTTTCTAA
* *
50398659 TTAAGACATAATTTTTTTAA
1 TTAAGACATAAATTTTCTAA
50398679 TT
1 TT
50398681 TCATTTGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (20 bp):
TTAAGACATAAATTTTCTAA
Found at i:50406384 original size:27 final size:27
Alignment explanation
Indices: 50406347--50406528 Score: 256
Period size: 27 Copynumber: 6.7 Consensus size: 27
50406337 AGAGGTCAAT
*
50406347 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
**
50406374 AAATGATTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
50406401 AAATGACTGAAATACCCCTCATAGGGTA
1 AAATGACCGAAATACCCC-CATAGGGTA
*
50406429 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
50406456 AAATGATCGAAATGCCCCCTATAGGGTA
1 AAATGACCGAAATACCCCC-ATAGGGTA
* *
50406484 AAATGATCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
50406511 AAATGACCAAAATACCCC
1 AAATGACCGAAATACCCC
50406529 ATAAGTAAAA
Statistics
Matches: 142, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
27 92 0.65
28 50 0.35
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:50406442 original size:55 final size:54
Alignment explanation
Indices: 50406347--50406528 Score: 267
Period size: 55 Copynumber: 3.3 Consensus size: 54
50406337 AGAGGTCAAT
*
50406347 AAATGACTGAAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
* *
50406401 AAATGACTGAAATACCCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCC-CATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
* *
50406456 AAATGA-TCGAAATGCCCCCTATAGGGTAAAATGATCGAAATACCCCTATAGGGTA
1 AAATGACT-GAAATACCCCC-ATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
**
50406511 AAATGACCAAAATACCCC
1 AAATGACTGAAATACCCC
50406529 ATAAGTAAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
54 20 0.18
55 94 0.82
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (54 bp):
AAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
Found at i:50406507 original size:82 final size:82
Alignment explanation
Indices: 50406347--50406528 Score: 296
Period size: 82 Copynumber: 2.2 Consensus size: 82
50406337 AGAGGTCAAT
** *
50406347 AAATGACTGAAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTGAA
1 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
50406412 ATACCCCTCATAGGGTA
66 ATACCCCTCATAGGGTA
*
50406429 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATGCCCCCTATAGGGTAAAATGA-TCG
1 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC-ATAGGGTAAAATGACT-G
50406493 AAATACCCCT-ATAGGGTA
64 AAATACCCCTCATAGGGTA
50406511 AAATGACCAAAATACCCC
1 AAATGACCAAAATACCCC
50406529 ATAAGTAAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
82 69 0.73
83 25 0.27
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (82 bp):
AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
ATACCCCTCATAGGGTA
Found at i:50418179 original size:17 final size:16
Alignment explanation
Indices: 50418157--50418189 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
50418147 GAATTTTCTG
50418157 TTATTTTTTTATTATTT
1 TTATTTTTTT-TTATTT
50418174 TTATTTTTTTTTATTT
1 TTATTTTTTTTTATTT
50418190 ATTTTGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (16 bp):
TTATTTTTTTTTATTT
Found at i:50424009 original size:19 final size:19
Alignment explanation
Indices: 50423985--50424024 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50423975 ATGTAATTTG
50423985 TTAAGA-ATAAATTTTCTAA
1 TTAAGACAT-AATTTTCTAA
*
50424004 TTAAGACATAATTTTTTAA
1 TTAAGACATAATTTTCTAA
50424023 TT
1 TT
50424025 TCATTTGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAAGACATAATTTTCTAA
Found at i:50431728 original size:27 final size:27
Alignment explanation
Indices: 50431691--50431885 Score: 273
Period size: 27 Copynumber: 7.1 Consensus size: 27
50431681 AGAGGTCAAT
*
50431691 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
**
50431718 AAATGATTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
50431745 AAATGACTGAAATACCCCTCATAGGGTA
1 AAATGACCGAAATACCCC-CATAGGGTA
*
50431773 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
50431800 AAATGATCGAAATGCCCCCTATAGGGTA
1 AAATGACCGAAATACCCCC-ATAGGGTA
* *
50431828 AAATGATCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
50431855 AAATGACCAAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
50431882 AAAT
1 AAAT
50431886 TATTATTATA
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
27 103 0.67
28 50 0.33
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:50431786 original size:55 final size:54
Alignment explanation
Indices: 50431691--50431885 Score: 284
Period size: 55 Copynumber: 3.6 Consensus size: 54
50431681 AGAGGTCAAT
*
50431691 AAATGACTGAAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
* *
50431745 AAATGACTGAAATACCCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCC-CATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
* *
50431800 AAATGA-TCGAAATGCCCCCTATAGGGTAAAATGATCGAAATACCCCTATAGGGTA
1 AAATGACT-GAAATACCCCC-ATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
** *
50431855 AAATGACCAAAATACCCCCATAAGGTAAAAT
1 AAATGACTGAAATACCCCCATAGGGTAAAAT
50431886 TATTATTATA
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
54 31 0.25
55 95 0.75
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (54 bp):
AAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTA
Found at i:50431851 original size:82 final size:82
Alignment explanation
Indices: 50431691--50431885 Score: 313
Period size: 82 Copynumber: 2.4 Consensus size: 82
50431681 AGAGGTCAAT
** *
50431691 AAATGACTGAAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACTGAA
1 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
50431756 ATACCCCTCATAGGGTA
66 ATACCCCTCATAGGGTA
*
50431773 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATGCCCCCTATAGGGTAAAATGA-TCG
1 AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCC-ATAGGGTAAAATGACT-G
50431837 AAATACCCCT-ATAGGGTA
64 AAATACCCCTCATAGGGTA
*
50431855 AAATGACCAAAATACCCCCATAAGGTAAAAT
1 AAATGACCAAAATACCCCCATAGGGTAAAAT
50431886 TATTATTATA
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
82 81 0.76
83 25 0.24
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (82 bp):
AAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
ATACCCCTCATAGGGTA
Found at i:50434781 original size:11 final size:10
Alignment explanation
Indices: 50434760--50434833 Score: 55
Period size: 11 Copynumber: 7.3 Consensus size: 10
50434750 CTTTTTGTTC
*
50434760 ATTTGTTATT
1 ATTTTTTATT
50434770 ATTATTTTATT
1 ATT-TTTTATT
*
50434781 ATTTTAATATT
1 ATTTT-TTATT
*
50434792 ATCTTTT-TT
1 ATTTTTTATT
50434801 ATTTTATT-TT
1 ATTTT-TTATT
50434811 ATTTTTT-TT
1 ATTTTTTATT
*
50434820 ATATTGTTATT
1 AT-TTTTTATT
50434831 ATT
1 ATT
50434834 ACTAATATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
9 12 0.23
10 20 0.38
11 21 0.40
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (10 bp):
ATTTTTTATT
Found at i:50434817 original size:19 final size:20
Alignment explanation
Indices: 50434766--50434821 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
50434756 GTTCATTTGT
50434766 TATTATTATTTTATTATTTTAA
1 TATTATT-TTTT-TTATTTTAA
*
50434788 TATTATCTTTTTTATTTT-A
1 TATTATTTTTTTTATTTTAA
*
50434807 TTTTATTTTTTTTAT
1 TATTATTTTTTTTAT
50434822 ATTGTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.45
20 7 0.23
21 4 0.13
22 6 0.19
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTATTTTTTTTATTTTAA
Found at i:50442724 original size:11 final size:13
Alignment explanation
Indices: 50442700--50442731 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50442690 TAGTTTATTA
50442700 ATATTTTAATATG
1 ATATTTTAATATG
50442713 AT-TTTTAA-ATG
1 ATATTTTAATATG
50442724 ATATTTTA
1 ATATTTTA
50442732 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:50457591 original size:9 final size:9
Alignment explanation
Indices: 50457577--50457614 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
50457567 GAGGGAAGGC
50457577 TCATAGAGT
1 TCATAGAGT
50457586 TCATAGAGT
1 TCATAGAGT
50457595 TCATAGAGT
1 TCATAGAGT
50457604 TCATAGAGT
1 TCATAGAGT
50457613 TC
1 TC
50457615 GTGAATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (9 bp):
TCATAGAGT
Found at i:50463012 original size:24 final size:24
Alignment explanation
Indices: 50462985--50463030 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
50462975 GGAGGATATA
* *
50462985 GAGGAAGACTTTGAAGAAGATCTG
1 GAGGAAGACCTAGAAGAAGATCTG
*
50463009 GAGGATGACCTAGAAGAAGATC
1 GAGGAAGACCTAGAAGAAGATC
50463031 CTAAAGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.33, T:0.17
Consensus pattern (24 bp):
GAGGAAGACCTAGAAGAAGATCTG
Found at i:50469230 original size:15 final size:15
Alignment explanation
Indices: 50469198--50469236 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
50469188 AACAATAAGA
50469198 AAGATAAT-AAAACC
1 AAGATAATGAAAACC
*
50469212 AAGATAATGAAATCC
1 AAGATAATGAAAACC
50469227 AAGAT-ATGAA
1 AAGATAATGAA
50469237 GCTCTACTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.59, C:0.10, G:0.13, T:0.18
Consensus pattern (15 bp):
AAGATAATGAAAACC
Found at i:50473022 original size:26 final size:26
Alignment explanation
Indices: 50472982--50473031 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
50472972 ACCAATATCG
* * *
50472982 CAACAAGGCTGCCAGTAATAGTATTA
1 CAACAAAGCTACCAGTAACAGTATTA
50473008 CAACAAAGCTACCAGTAACAGTAT
1 CAACAAAGCTACCAGTAACAGTAT
50473032 CGTAGGAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (26 bp):
CAACAAAGCTACCAGTAACAGTATTA
Found at i:50477651 original size:13 final size:13
Alignment explanation
Indices: 50477633--50477663 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
50477623 ATATAGGACC
50477633 AGCACCTTTGCCT
1 AGCACCTTTGCCT
50477646 AGCACCTTTGCCT
1 AGCACCTTTGCCT
50477659 AGCAC
1 AGCAC
50477664 TCCACGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.39, G:0.16, T:0.26
Consensus pattern (13 bp):
AGCACCTTTGCCT
Found at i:50488430 original size:26 final size:26
Alignment explanation
Indices: 50488375--50488447 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
50488365 AATATCGCAG
* * *
50488375 CAAAGCTGCCAGT-ACTAATATTACAG
1 CAAAGCTGCCAGTAAC-AGTATCACAA
*
50488401 CAAAGCTGCCTGTAACAGTATCACAA
1 CAAAGCTGCCAGTAACAGTATCACAA
* *
50488427 CAAAGCTACCAGTAAGAGTAT
1 CAAAGCTGCCAGTAACAGTAT
50488448 ACTTCCTCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTATCACAA
Found at i:50490821 original size:137 final size:138
Alignment explanation
Indices: 50490563--50490822 Score: 344
Period size: 137 Copynumber: 1.9 Consensus size: 138
50490553 AGCTGTAAAA
* * ** * *
50490563 TGGGTCTGTTCACACAAGCTGACAGTCAGAATGTAAGCTACACGATGCTGCTCACCCAATTTGAT
1 TGGGACTGCTCACACAAGCTGACAGTCAGAATGTAAGCTACACGACACCGCTCACCCAAGTTGAT
* * * * *
50490628 GAGTATTCGCAACTAATGTTGGACCCCAGCCATCAGTAGGACATTCAGGACTAGCACCTGGAATA
66 AAGTATTCGCAACTAATGTCGGAACCCAACCATCAGTAGGACATTCAGGACAAGCACCTGGAATA
50490693 TGGTCACT
131 TGGTCACT
** * *
50490701 TGGGACTGCTCACACAAGCTGATGGTCGGAATGT-AGCTACACGACACCGCTCACGCAAGTTGAT
1 TGGGACTGCTCACACAAGCTGACAGTCAGAATGTAAGCTACACGACACCGCTCACCCAAGTTGAT
* *
50490765 AAGTATTTGCAACTAATGTCGGAACTCAACCAAT-AGTAGGACATTCAGGACAAGCACC
66 AAGTATTCGCAACTAATGTCGGAACCCAACC-ATCAGTAGGACATTCAGGACAAGCACC
50490823 CAAAACATGT
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
137 73 0.70
138 31 0.30
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (138 bp):
TGGGACTGCTCACACAAGCTGACAGTCAGAATGTAAGCTACACGACACCGCTCACCCAAGTTGAT
AAGTATTCGCAACTAATGTCGGAACCCAACCATCAGTAGGACATTCAGGACAAGCACCTGGAATA
TGGTCACT
Found at i:50497064 original size:20 final size:20
Alignment explanation
Indices: 50497029--50497077 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
50497019 ATCATGGTCT
*
50497029 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
50497048 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
50497068 TTGCTTACTT
1 TTGCTTACTT
50497078 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:50497408 original size:50 final size:50
Alignment explanation
Indices: 50497287--50497520 Score: 211
Period size: 50 Copynumber: 4.6 Consensus size: 50
50497277 CATGCCAAAC
** * * *
50497287 CCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--TGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGGTGCCAATG
* * * * ** *
50497336 TCATATCCCAGATATGTTCTTACATGGGAGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATG
* ** *
50497386 CCATGTCCCAGACATGGCCTTACGGGGGACCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATG
* **
50497436 CCATGTCGCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATAATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTGCCAATG
*
50497492 CCATGTCCCAAACATGGTCTTACATGGGA
1 CCATGTCCCAGACATGGTCTTACATGGGA
50497521 TCTCATTCCC
Statistics
Matches: 147, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 30 0.20
50 79 0.54
53 2 0.01
56 35 0.24
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATG
Found at i:50499834 original size:26 final size:26
Alignment explanation
Indices: 50499805--50499868 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
50499795 TATATATAGT
*
50499805 TGCTTACACGAGCTGTGAAATAGGTA
1 TGCTTACACAAGCTGTGAAATAGGTA
* * *
50499831 TGCTCACACAAGCTGTGAAATGGGTC
1 TGCTTACACAAGCTGTGAAATAGGTA
50499857 TGCTTACACAAG
1 TGCTTACACAAG
50499869 TTGTAGGTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TGCTTACACAAGCTGTGAAATAGGTA
Found at i:50504911 original size:24 final size:24
Alignment explanation
Indices: 50504884--50504930 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
50504874 AAATGATTGA
*
50504884 TTTGTCTATGATTGGTATGACTGC
1 TTTGTCTATGATTGGTATCACTGC
* *
50504908 TTTGTCTGTGATTTGTATCACTG
1 TTTGTCTATGATTGGTATCACTG
50504931 ATTCTGAGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.13, G:0.23, T:0.49
Consensus pattern (24 bp):
TTTGTCTATGATTGGTATCACTGC
Found at i:50505112 original size:32 final size:32
Alignment explanation
Indices: 50505071--50505401 Score: 436
Period size: 32 Copynumber: 10.4 Consensus size: 32
50505061 GCTGCAATGC
50505071 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
50505103 TACTGATGGCTTTGTGCCGATCATTTTATCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
50505135 TACTGATGGCTTTGTGCCGATCATTTTACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
50505167 TACTGATGGCTTTGTG-CGTATCATATTACCGT
1 TACTGATGGCTTTGTGCCG-ATCATATTACCGT
* * *
50505199 TACTGATGG-TTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
*
50505231 TACTGATGGCTTTGTTCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
50505263 TACTGCTGGCTTTGTGCCGATCATATTACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
50505295 TACTGATGGCTTTGTGCCTG-TCATATTATCGT
1 TACTGATGGCTTTGTGCC-GATCATATTACCGT
* * * *
50505327 TACTGATGGCTGTGTGCCAATCATATCACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
50505359 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
50505390 TACTTATGGCTT
1 TACTGATGGCTT
50505402 GTTGCCATTT
Statistics
Matches: 264, Mismatches: 29, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
31 15 0.06
32 244 0.92
33 5 0.02
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:50514816 original size:12 final size:12
Alignment explanation
Indices: 50514785--50514824 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
50514775 TCTGGTAGGA
50514785 TGAATGTGAA-G
1 TGAATGTGAAGG
50514796 TGAATGTGAAGG
1 TGAATGTGAAGG
*
50514808 TGAAAGTGAAGG
1 TGAATGTGAAGG
50514820 TGAAT
1 TGAAT
50514825 CTTATTAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.25
Consensus pattern (12 bp):
TGAATGTGAAGG
Found at i:50522820 original size:16 final size:17
Alignment explanation
Indices: 50522799--50522830 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
50522789 TACTTCTCTT
50522799 TGGTTGATTAA-AATTA
1 TGGTTGATTAAGAATTA
50522815 TGGTTGATTAAGAATT
1 TGGTTGATTAAGAATT
50522831 TCTGTGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (17 bp):
TGGTTGATTAAGAATTA
Found at i:50524960 original size:50 final size:50
Alignment explanation
Indices: 50524854--50525046 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
50524844 GGTAAGGAGA
*
50524854 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGATATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CG--A-TATGAGAGG
* *
50524910 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * **
50524960 TCCC-TCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * * *
50525010 TCCCATGAAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
50525047 GTATAGAAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
49 1 0.01
50 79 0.66
51 2 0.02
53 1 0.01
55 1 0.01
56 36 0.30
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
Found at i:50538673 original size:50 final size:50
Alignment explanation
Indices: 50538503--50538690 Score: 243
Period size: 51 Copynumber: 3.7 Consensus size: 50
50538493 TGCCTATAAA
* * * *
50538503 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGAT-TTGGT
* * * * *
50538554 CACATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAAGATTTGGT
*
50538605 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAA-AGTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGA-TTTGGT
*
50538655 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
50538691 TCAAATGATA
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 43 0.36
51 71 0.60
52 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGATTTGGT
Found at i:50542794 original size:19 final size:20
Alignment explanation
Indices: 50542778--50542822 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
50542768 TTATGAAACT
*
50542778 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
50542797 TAATGCAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
50542817 -AATGCA
1 TAATGCA
50542823 AAAAGAGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:50555546 original size:40 final size:40
Alignment explanation
Indices: 50555448--50555710 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
50555438 TCCTCGTTCA
* * * * *
50555448 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50555487 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50555527 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50555567 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
50555607 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
50555647 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
50555687 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50555711 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:50563491 original size:40 final size:40
Alignment explanation
Indices: 50563393--50563655 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
50563383 TCCTCGTTCA
* * * * *
50563393 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50563432 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50563472 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50563512 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
50563552 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
50563592 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
50563632 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50563656 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:50568854 original size:28 final size:28
Alignment explanation
Indices: 50568814--50568873 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
50568804 TTAAACATGC
50568814 ACATTAACCCCACCTTCCAATGATGGCA
1 ACATTAACCCCACCTTCCAATGATGGCA
50568842 ACATTAACCCCACCTTCCAATGATGGCA
1 ACATTAACCCCACCTTCCAATGATGGCA
50568870 ACAT
1 ACAT
50568874 GTCACTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.33, C:0.35, G:0.10, T:0.22
Consensus pattern (28 bp):
ACATTAACCCCACCTTCCAATGATGGCA
Found at i:50570532 original size:17 final size:17
Alignment explanation
Indices: 50570506--50570545 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
50570496 CCAATGCACT
* *
50570506 AAAATGAAAATGTAATG
1 AAAATAAAAATGCAATG
50570523 AAAATAAAAATGCAATG
1 AAAATAAAAATGCAATG
*
50570540 ATAATA
1 AAAATA
50570546 TATACTTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (17 bp):
AAAATAAAAATGCAATG
Found at i:50570707 original size:5 final size:5
Alignment explanation
Indices: 50570697--50570724 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
50570687 GGAGCACTTT
50570697 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
50570725 GGGCTTTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:50581550 original size:106 final size:106
Alignment explanation
Indices: 50581054--50581521 Score: 652
Period size: 106 Copynumber: 4.4 Consensus size: 106
50581044 TTACAAGTGA
* * * * * * *
50581054 TGATATGATAAAGGTTAGCTAATTTAATATCGCAATCTAAGTTTCTTTGAGTTAGTTTATTTAAG
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAG
* * **
50581119 ATCACAACTCCTAAAACAGCTTGATGACCTACGTTCACAGC
66 ATCGCAACTCCTAAAATAGCTCAATGACCTACGTTCACAGC
*
50581160 TGATATTATAAAGGTTAGCTGATTTACGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAG
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAG
* *
50581225 ATTAG-AACTCCTAAAATAGCTCAATGACCTACGTTCATAGC
66 A-TCGCAACTCCTAAAATAGCTCAATGACCTACGTTCACAGC
* * * * *
50581266 TGATATTATAAAGGTTAGTTAATTTAAGA-CTGCAACCTAAGTTTTTTTGAGTTAGCTGATTTGA
1 TGATATTATAAAGGTTAGCTGATTTAAGATC-ACAACCTAAGTTTCTTTGAGTTAGCTGATTTAA
* * *
50581330 GATCGCAACTCCTAAAACATCTCACTGACCTACGTTCACAGC
65 GATCGCAACTCCTAAAATAGCTCAATGACCTACGTTCACAGC
* *
50581372 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGCTTCTTTGAGTTAGCTGATTTAAT
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAG
*
50581437 ATCGCAACTCCTAAAATAGCTCAATGACCTACGTTTACAGC
66 ATCGCAACTCCTAAAATAGCTCAATGACCTACGTTCACAGC
* * *
50581478 TAATATTATAAAGGTTAGCTGATTTAAAATCACAACCCAAGTTT
1 TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTT
50581522 ATTTAAATTT
Statistics
Matches: 318, Mismatches: 40, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
105 3 0.01
106 313 0.98
107 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (106 bp):
TGATATTATAAAGGTTAGCTGATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAG
ATCGCAACTCCTAAAATAGCTCAATGACCTACGTTCACAGC
Found at i:50582264 original size:15 final size:15
Alignment explanation
Indices: 50582244--50582274 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50582234 TCTTTAAGTC
50582244 AACCACCACAATTTT
1 AACCACCACAATTTT
50582259 AACCACCACAATTTT
1 AACCACCACAATTTT
50582274 A
1 A
50582275 CGTTCTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
AACCACCACAATTTT
Found at i:50585276 original size:47 final size:47
Alignment explanation
Indices: 50585225--50585717 Score: 799
Period size: 47 Copynumber: 10.4 Consensus size: 47
50585215 TTGTGATGTG
50585225 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585272 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585319 AGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAA
50585366 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585415 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50585462 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585509 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50585558 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50585605 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
50585652 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585699 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50585718 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 20, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.00
47 329 0.78
49 87 0.21
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:50585440 original size:143 final size:143
Alignment explanation
Indices: 50585229--50585717 Score: 874
Period size: 143 Copynumber: 3.4 Consensus size: 143
50585219 GATGTGAGTG
50585229 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
50585294 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
50585359 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
50585372 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
50585437 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
50585502 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
*
50585515 TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
50585580 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
50585645 ATGTGAAAGTG--
131 ATGTGAAAGTGTA
* * * * * * *
50585656 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50585718 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 54 0.16
143 281 0.84
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTA
Found at i:50585507 original size:190 final size:188
Alignment explanation
Indices: 50585225--50585717 Score: 817
Period size: 190 Copynumber: 2.6 Consensus size: 188
50585215 TTGTGATGTG
50585225 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
50585290 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
50585354 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
130 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50585415 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
50585480 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATG
*
50585545 TGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
50585605 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * *
50585670 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50585718 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
188 14 0.05
190 228 0.80
192 42 0.15
193 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:50585892 original size:37 final size:37
Alignment explanation
Indices: 50585839--50585914 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
50585829 AGCTCTAAAA
* ** *
50585839 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGAAGATTATGTCCGGGTAAG
*
50585876 ACCCGATAACTTCGTGTGAAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGAAGATTATGTCCGGGTAAG
50585913 AC
1 AC
50585915 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGAAGATTATGTCCGGGTAAG
Found at i:50587412 original size:40 final size:40
Alignment explanation
Indices: 50587129--50587400 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
50587119 GAGAATTGAG
50587129 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50587169 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50587209 AGTGATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50587249 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50587289 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
50587329 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50587369 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
50587401 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 212 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50591232 original size:47 final size:47
Alignment explanation
Indices: 50591181--50591626 Score: 721
Period size: 47 Copynumber: 9.4 Consensus size: 47
50591171 TTGTGATGTG
50591181 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50591228 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50591275 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50591324 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50591371 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50591418 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
50591467 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
50591514 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
50591561 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
50591608 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50591627 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 286 0.76
49 89 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:50591302 original size:96 final size:94
Alignment explanation
Indices: 50591181--50591626 Score: 721
Period size: 96 Copynumber: 4.7 Consensus size: 94
50591171 TTGTGATGTG
50591181 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50591246 GGCCGAATGGCCAATGTGATGAATGTGAA
66 GGCCGAATGGCCAATGTGATGAATGTGAA
50591275 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
50591340 AAGGCCTAATAGCCGATGTGATGAATGTGAA
64 AAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
50591371 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
* * *
50591436 AAGGCCTAATGGCCGATGTGGTGAATGTGAA
64 AAGGCCGAATGGCCAATGTGATGAATGTGAA
50591467 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50591532 GGCCGAATGGCCAATGTGATGAATGTGAA
66 GGCCGAATGGCCAATGTGATGAATGTGAA
* * * * * * *
50591561 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50591626 G
66 G
50591627 TCCCGAAGGG
Statistics
Matches: 329, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
94 148 0.45
96 181 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:50591329 original size:143 final size:143
Alignment explanation
Indices: 50591181--50591626 Score: 797
Period size: 143 Copynumber: 3.1 Consensus size: 143
50591171 TTGTGATGTG
50591181 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50591246 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
50591311 TGATGAATGTGAA
131 TGATGAATGTGAA
*
50591324 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
50591389 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
*
50591454 TGGTGAATGTGAA
131 TGATGAATGTGAA
50591467 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * *
50591532 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
*
50591595 TGATGGATGTGAA
131 TGATGAATGTGAA
*
50591608 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50591627 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
141 54 0.18
143 238 0.82
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAA
Found at i:50591814 original size:37 final size:37
Alignment explanation
Indices: 50591745--50591823 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50591735 CCGAGCTCTA
* * * *
50591745 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
*
50591782 AAGACCCGATAACTTCGTATGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
50591819 AAGAC
1 AAGAC
50591824 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:50607844 original size:2 final size:2
Alignment explanation
Indices: 50607837--50607865 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50607827 TTAAGCTTAA
50607837 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
50607866 TCAAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:50610668 original size:16 final size:15
Alignment explanation
Indices: 50610647--50610685 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
50610637 ATTAATAAAA
50610647 AAATATTTATTTTTAG
1 AAATATTTATTTTT-G
* *
50610663 AAATATTCATTTTTT
1 AAATATTTATTTTTG
50610678 AAATATTT
1 AAATATTT
50610686 GATGACATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
AAATATTTATTTTTG
Found at i:50611656 original size:31 final size:32
Alignment explanation
Indices: 50611609--50611669 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
50611599 ACAATTCAGC
50611609 TCTTTTTAAAAGATTGATGG-TCAAATTTAATTT
1 TCTTTTT-AAAGATTGA-GGATCAAATTTAATTT
50611642 TCTTTTT-AAGATTGAGGATCAAATTTAA
1 TCTTTTTAAAGATTGAGGATCAAATTTAA
50611670 CTCCAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.07
31 18 0.67
33 7 0.26
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (32 bp):
TCTTTTTAAAGATTGAGGATCAAATTTAATTT
Found at i:50613105 original size:68 final size:68
Alignment explanation
Indices: 50612993--50613254 Score: 328
Period size: 68 Copynumber: 3.9 Consensus size: 68
50612983 TCGAAATTAA
* * *
50612993 GAGTCCGCCAAGACATTAAACATGGATTCATAATGTGTAAGACCATAGCTAGGATATGACAATAT
1 GAGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACAT
50613058 ATG
66 ATG
* * * * * *
50613061 AAGTCCTCCAAGACATTAAACTTGAGTTTATAATGTGTATGACCATAGCTAGGCTATGACAACAT
1 GAGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACAT
50613126 ATG
66 ATG
* * * * * *
50613129 GAGTTCGCTAGGACATTAAACATGGGTTCATACTGTGTAAGACCATATCTAGGCTATGGCAACAT
1 GAGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACAT
50613194 ATG
66 ATG
** * * *
50613197 GAGTCTACCAAAACATTAAACATGGGTTCATACAT-TGTAAGACCATAGTTGGGCTATG
1 GAGTCCGCCAAGACATTAAACATGGGTTCATA-ATGTGTAAGACCATAGCTAGGCTATG
50613255 GTGCCAGATA
Statistics
Matches: 162, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
68 161 0.99
69 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (68 bp):
GAGTCCGCCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTAGGCTATGACAACAT
ATG
Found at i:50614910 original size:29 final size:29
Alignment explanation
Indices: 50614868--50614972 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
50614858 CACCATCGGT
*
50614868 ACATAGTACCTGATAAATATAAAACTGAA
1 ACATAGTACCTGATAAATATAACACTGAA
* * * * *
50614897 ACATAGTGCTTGATAACTATAACACCGAT
1 ACATAGTACCTGATAAATATAACACTGAA
*
50614926 ACAAAGTACCTGATAAATATAATCACT-AA
1 ACATAGTACCTGATAAATATAA-CACTGAA
*
50614955 CACATAGTGCCTGATAAA
1 -ACATAGTACCTGATAAA
50614973 CCCTAATGAC
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
29 42 0.70
30 18 0.30
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (29 bp):
ACATAGTACCTGATAAATATAACACTGAA
Found at i:50618651 original size:40 final size:40
Alignment explanation
Indices: 50618594--50618674 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
50618584 CTCGAGAGTG
*
50618594 TTAGTTAACCTAAGGTTAAGGACAACGACTACCTCAAGTC
1 TTAGTTAACCTAAGGTTAAGGACAACGACTACATCAAGTC
*
50618634 TTAGTTAACCTAGGGTTAAGGACAACGACTACATCAAGTC
1 TTAGTTAACCTAAGGTTAAGGACAACGACTACATCAAGTC
50618674 T
1 T
50618675 ATAAATAGGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (40 bp):
TTAGTTAACCTAAGGTTAAGGACAACGACTACATCAAGTC
Found at i:50627377 original size:22 final size:22
Alignment explanation
Indices: 50627319--50627370 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
50627309 TGTAACACCC
*
50627319 TGAATTTTGGGGTTAGAAGTTT
1 TGAATTTTGGGGTTAAAAGTTT
*
50627341 TGACTTTTGGGGTTAAAAGTTT
1 TGAATTTTGGGGTTAAAAGTTT
50627363 TGAATTTT
1 TGAATTTT
50627371 TCGGTTAGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (22 bp):
TGAATTTTGGGGTTAAAAGTTT
Found at i:50632327 original size:33 final size:33
Alignment explanation
Indices: 50632280--50632343 Score: 112
Period size: 33 Copynumber: 1.9 Consensus size: 33
50632270 TGGATTGCCA
50632280 TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTT
1 TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTT
50632313 TCTGGGGT-TCTCTTCTGGAATCTGTTGTTAG
1 TCTGGGGTCT-TCTTCTGGAATCTGTTGTTAG
50632344 CCGTTCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.47
Consensus pattern (33 bp):
TCTGGGGTCTTCTTCTGGAATCTGTTGTTAGTT
Found at i:50639100 original size:59 final size:59
Alignment explanation
Indices: 50639001--50639115 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 59
50638991 GCATACATTA
* * *
50639001 AACCTACAGGGGAGACACGGTCATGTCGCCTAGCCATGTGTGACACACGGCTGAGTCAG
1 AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGTCAG
* * * **
50639060 AACCTACAAGGGACACATGGTCGTGTCGCCTGGCTGTGTGTCACACACGGCTGAGT
1 AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGT
50639116 TAGACGCTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.19
Consensus pattern (59 bp):
AACCTACAAGGGACACACGGTCATGTCGCCTAGCCATGTGTCACACACGGCTGAGTCAG
Found at i:50639934 original size:41 final size:41
Alignment explanation
Indices: 50639886--50640030 Score: 229
Period size: 41 Copynumber: 3.5 Consensus size: 41
50639876 AAGTATAGAT
50639886 AGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAAC
* * * *
50639927 AGAGGCACTTATGTGCAATTCAAGGGTA-CTGAAATACAAAT
1 AGGGGCACGTATGTGCAATTCAAGGGTATC-GAAGTACAAAC
*
50639968 AGGGGCACGTATGTGCAATTCAGGGGTATCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAAC
50640009 AGGGGCACGTATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
50640031 TTATTATTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 1 0.01
41 91 0.98
42 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAAC
Found at i:50641917 original size:11 final size:13
Alignment explanation
Indices: 50641897--50641928 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50641887 AATAAAATAA
50641897 TAAAATATC-ATT
1 TAAAATATCAATT
50641909 TAAAA-ATCAATT
1 TAAAATATCAATT
50641921 TAAAATAT
1 TAAAATAT
50641929 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 13 0.72
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCAATT
Found at i:50654958 original size:56 final size:51
Alignment explanation
Indices: 50654731--50654979 Score: 263
Period size: 50 Copynumber: 4.8 Consensus size: 51
50654721 GATCATAACA
* * * * * *
50654731 TGCCAAAGCCATGTCCCAAACATGATCTTAAATGGGTTA-TTCTC-ATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGG--ACCTCTCTATCTCGG
* * ** *
50654782 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGATCTCTC-ATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTCGG
* *
50654832 TGCCAACGCCATGTCCTAGACATAGTCTTACATGGGACCTCTC-ATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTCGG
50654882 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-T-ATCTC--GG
* * *
50654937 ATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
50654980 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 94 0.55
51 29 0.17
53 5 0.03
55 2 0.01
56 39 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTCGG
Found at i:50661240 original size:30 final size:29
Alignment explanation
Indices: 50661205--50661261 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
50661195 CCTCGACTCT
*
50661205 AACTTTGT-CAAAATTATGATTTTTCCCCTA
1 AACTTT-TACAAAATTA-CATTTTTCCCCTA
*
50661235 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTTCCCC
50661262 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.44
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTTCCCCTA
Found at i:50668369 original size:125 final size:125
Alignment explanation
Indices: 50668153--50668681 Score: 679
Period size: 125 Copynumber: 4.2 Consensus size: 125
50668143 ATTTTTGCAG
* * *
50668153 TCGCGCCCCCGTGTACGCGTTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGAGTTGACGTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
* * * *
50668217 TCTGAGCAAATAGTATAAAAAAT-GCTTCAAGCAAGATGCTATATGCGAAGAATTTGTGAAA
66 TCTGAGCAAATA--ATATAAAATCGCTTCAACCAGGATGCTATATGAGAAGAATTTGTGAAA
* * * *
50668278 TCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAATTTCGAGTTGACATT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
* *
50668343 TCTGAGCAAATAATATAAAATCGCTTCTACCAGGATG-TTTATGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAATATAAAATCGCTTCAACCAGGATGCTATATGAGAAGAATTTGTGAAA
* * *
50668402 TCGCGCCCACGTGGACGTGCTTTTGCTACAGTAGGTCCT-GAAAAAATTATTTCGAGTTGACGTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
* ** * * *
50668466 TCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAGGATGCTATTTGAGAAGAATTTCTGAAA
66 TCTGAGCAAATAATAT-AAAATCGCTTCAACCAGGATGCTATATGAGAAGAATTTGTGAAA
* * * * * * *
50668527 TCGTGCCCTCATGGACGCGCTTTTTCTACAGTTGGTCCTGGAAGAAATAATTTTGAGTTGATGTT
1 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
* * * * *
50668592 TTTGAGCAAATAGTACAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAATATAAAATCGCTTCAACCAGGATGCTATATGAGAAGAATTTGTGAAA
* *
50668652 TCACGCCCACGTGGACGCACTTTTGCTACA
1 TCGCGCCCACGTGGACGCGCTTTTGCTACA
50668682 ATAGCATGTT
Statistics
Matches: 347, Mismatches: 52, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
123 37 0.11
124 80 0.23
125 163 0.47
126 67 0.19
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (125 bp):
TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTT
TCTGAGCAAATAATATAAAATCGCTTCAACCAGGATGCTATATGAGAAGAATTTGTGAAA
Found at i:50668600 original size:249 final size:250
Alignment explanation
Indices: 50668123--50668681 Score: 868
Period size: 249 Copynumber: 2.2 Consensus size: 250
50668113 AAAATCAAAG
* * * * * * * *
50668123 CAGGATGATTTATCAGAAGGATTTTTGCAGTCGCGCCCCCGTGTACGCGTTTTTGCTACAGTAGG
1 CAGGATGATTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* *
50668188 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCAAGA
66 TCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAAGA
* *
50668253 TGCTATATGCGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTG
131 TGCTATATGAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTG
*
50668318 GAAGAAATAATTTCGAGTTGACATTTCTGAGCAAATAATATAAAATCGCTTCTAC
196 GAAGAAATAATTTCGAGTTGACATTTCTGAGCAAATAATACAAAATCGCTTCTAC
*
50668373 CAGGATG-TTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGTAGG
1 CAGGATGATTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* *
50668437 TCCTGAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAGGA
66 TCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAAGA
* * *
50668502 TGCTATTTGAGAAGAATTTCTGAAATCGTGCCCTCATGGACGCGCTTTTTCTACAGTTGGTCCTG
131 TGCTATATGAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTG
* ** * *
50668567 GAAGAAATAATTTTGAGTTGATGTTTTTGAGCAAATAGTACAAAATCGCTTCTAC
196 GAAGAAATAATTTCGAGTTGACATTTCTGAGCAAATAATACAAAATCGCTTCTAC
* * *
50668622 CAGGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCACGTGGACGCACTTTTGCTACA
1 CAGGATGATTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACA
50668682 ATAGCATGTT
Statistics
Matches: 281, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
249 225 0.80
250 56 0.20
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (250 bp):
CAGGATGATTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
TCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAAGA
TGCTATATGAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTTGGTCCTG
GAAGAAATAATTTCGAGTTGACATTTCTGAGCAAATAATACAAAATCGCTTCTAC
Found at i:50669989 original size:22 final size:22
Alignment explanation
Indices: 50669964--50670162 Score: 163
Period size: 22 Copynumber: 8.8 Consensus size: 22
50669954 ACGGTTTAGA
50669964 GTTTTTAAGTTTAGGGTTTGTG
1 GTTTTTAAGTTTAGGGTTTGTG
*
50669986 GTTTTTAAGTTAAGGGTTTAGT-
1 GTTTTTAAGTTTAGGGTTT-GTG
*
50670008 GTTTTTAGGTTTAGGGTTTGTG
1 GTTTTTAAGTTTAGGGTTTGTG
50670030 GTTTTTAAGTTAATAATTAGGGTTTG-G
1 GTTTTTAAG----T--TTAGGGTTTGTG
* **
50670057 GTTTTTTAAGTTTAGTGTTTAAG
1 G-TTTTTAAGTTTAGGGTTTGTG
* * *
50670080 GTTTTTAGGTTTAGGTTTTGGG
1 GTTTTTAAGTTTAGGGTTTGTG
* * **
50670102 GGTTTTAGGTTTAGGGTTTAAG
1 GTTTTTAAGTTTAGGGTTTGTG
*
50670124 GTTTTTAAGTTTAGAGTTTAG-G
1 GTTTTTAAGTTTAGGGTTT-GTG
*
50670146 G-TTTTAAGTTAAGGGTT
1 GTTTTTAAGTTTAGGGTT
50670163 ATGATTAGGG
Statistics
Matches: 145, Mismatches: 21, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
21 16 0.11
22 103 0.71
23 4 0.03
24 1 0.01
26 1 0.01
27 2 0.01
28 18 0.12
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (22 bp):
GTTTTTAAGTTTAGGGTTTGTG
Found at i:50670020 original size:44 final size:44
Alignment explanation
Indices: 50669951--50670162 Score: 185
Period size: 44 Copynumber: 4.7 Consensus size: 44
50669941 AGGTACAGTA
* * **
50669951 TTAACGGTTTAGAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAG
1 TTAAGGGTTTAGGGTTTTTAAGTTTAGGGTTTAAGGTTTTTAAG
* * **
50669995 TTAAGGGTTTAGTGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAG
1 TTAAGGGTTTAGGGTTTTTAAGTTTAGGGTTTAAGGTTTTTAAG
* *
50670039 TTAATAATTAGGGTTT-GGGTTTTTTAAGTTTAGTGTTTAAGGTTTTTAGG
1 -T--T-A--AGGGTTTAGGG-TTTTTAAGTTTAGGGTTTAAGGTTTTTAAG
* * * * *
50670089 TTTAGGTTTTGGGGGTTTTAGGTTTAGGGTTTAAGGTTTTTAAG
1 TTAAGGGTTTAGGGTTTTTAAGTTTAGGGTTTAAGGTTTTTAAG
* * *
50670133 TTTAGAGTTTAGGG-TTTTAAGTTAAGGGTT
1 TTAAGGGTTTAGGGTTTTTAAGTTTAGGGTT
50670163 ATGATTAGGG
Statistics
Matches: 140, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
43 14 0.10
44 84 0.60
45 4 0.03
47 2 0.01
48 1 0.01
49 3 0.02
50 32 0.23
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.50
Consensus pattern (44 bp):
TTAAGGGTTTAGGGTTTTTAAGTTTAGGGTTTAAGGTTTTTAAG
Found at i:50670067 original size:72 final size:72
Alignment explanation
Indices: 50669974--50670108 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
50669964 GTTTTTAAGT
* *
50669974 TTAGGGTTTGTGGTTTTTAAGTTAAGGGTTT-AGTGTTTTTAGGTTTAGGGTTTGTGGTTTTTAA
1 TTAGGGTTTGTGGTTTTTAAGTTAAGGGTTTAAG-GTTTTTAGGTTTAGGGTTTGGGGGTTTTAA
50670038 GTTAATAA
65 GTTAATAA
* * *
50670046 TTAGGGTTTG-GGTTTTTTAAGTTTAGTGTTTAAGGTTTTTAGGTTTAGGTTTTGGGGGTTTTA
1 TTAGGGTTTGTGG-TTTTTAAGTTAAGGGTTTAAGGTTTTTAGGTTTAGGGTTTGGGGGTTTTA
50670109 GGTTTAGGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
71 2 0.04
72 52 0.93
73 2 0.04
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (72 bp):
TTAGGGTTTGTGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAGGTTTAGGGTTTGGGGGTTTTAAG
TTAATAA
Found at i:50670465 original size:21 final size:21
Alignment explanation
Indices: 50670441--50670485 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
50670431 TTTTGTCCAG
*
50670441 CTTCCGGCGGCGATTGTGGTT
1 CTTCCGGCGGCGATTCTGGTT
*
50670462 CTTCCGGCGGGGATTCTGGTT
1 CTTCCGGCGGCGATTCTGGTT
50670483 CTT
1 CTT
50670486 GCAATAGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.24, G:0.36, T:0.36
Consensus pattern (21 bp):
CTTCCGGCGGCGATTCTGGTT
Found at i:50672026 original size:19 final size:21
Alignment explanation
Indices: 50672001--50672048 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
50671991 AACCTTTTTA
50672001 ATTTAATGTT-ATTTATAA-TG
1 ATTTAATGTTAATTT-TAATTG
*
50672021 -TTTAATCTTAATTTTAATTG
1 ATTTAATGTTAATTTTAATTG
50672041 ATTTAATG
1 ATTTAATG
50672049 CTATAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 11 0.48
20 6 0.26
21 6 0.26
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (21 bp):
ATTTAATGTTAATTTTAATTG
Found at i:50672412 original size:12 final size:12
Alignment explanation
Indices: 50672368--50672421 Score: 72
Period size: 12 Copynumber: 4.3 Consensus size: 12
50672358 TATGCATAGG
50672368 CATTCTTTCTTA
1 CATTCTTTCTTA
*
50672380 CATTTATTTCTGTA
1 CA-TTCTTTCT-TA
*
50672394 AATTCTTTCTTA
1 CATTCTTTCTTA
50672406 CATTCTTTCTTA
1 CATTCTTTCTTA
50672418 CATT
1 CATT
50672422 TGCATTTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
12 19 0.53
13 14 0.39
14 3 0.08
ACGTcount: A:0.20, C:0.20, G:0.02, T:0.57
Consensus pattern (12 bp):
CATTCTTTCTTA
Done.