Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 157 of 222
Found at i:50672529 original size:19 final size:19
Alignment explanation
Indices: 50672491--50672530 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50672481 TATAATTACT
*
50672491 TACATGAATATAATTTTAA
1 TACATGAATATAATTATAA
50672510 TACATGAATAT-ATATATAA
1 TACATGAATATAAT-TATAA
50672529 TA
1 TA
50672531 TATTCAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (19 bp):
TACATGAATATAATTATAA
Found at i:50677620 original size:12 final size:12
Alignment explanation
Indices: 50677569--50677613 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
50677559 ATTAAATACG
50677569 AATTTGAGAG-A
1 AATTTGAGAGAA
*
50677580 AATTTG-GAAGGA
1 AATTTGAG-AGAA
50677592 AA-TTGAGAGAA
1 AATTTGAGAGAA
50677603 AATTTGAGAGA
1 AATTTGAGAGA
50677614 GGATTTGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 1 0.03
11 16 0.55
12 12 0.41
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (12 bp):
AATTTGAGAGAA
Found at i:50687952 original size:18 final size:18
Alignment explanation
Indices: 50687929--50687966 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
50687919 TCATAATCAC
50687929 TTGAAAATTTCTTTTCAT
1 TTGAAAATTTCTTTTCAT
50687947 TTGAAAATTTCTTTTCAT
1 TTGAAAATTTCTTTTCAT
50687965 TT
1 TT
50687967 CTCATCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (18 bp):
TTGAAAATTTCTTTTCAT
Found at i:50694039 original size:45 final size:45
Alignment explanation
Indices: 50693975--50694162 Score: 220
Period size: 45 Copynumber: 4.2 Consensus size: 45
50693965 TACTACGTGT
* *
50693975 ACTGGGTACCATTAATTATAAAGGTGGTTGCTGTGTGCTGATTCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * *
50694020 ACTGGGTATGATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* *
50694065 ACCGGGTA-CTATTAATTATAAAGGTGGTTGCTATGTGTTGATTCC
1 ACTGGGTATC-ATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * * *
50694110 ACCGAGTATCATTGACTATAAGGGTGG-TGCTATGTGCTGA-TCC
1 ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
*
50694153 ACTGTGTATC
1 ACTGGGTATC
50694163 TGTTATTATT
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 11 0.09
44 12 0.10
45 100 0.81
46 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (45 bp):
ACTGGGTATCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCC
Found at i:50694136 original size:90 final size:88
Alignment explanation
Indices: 50693978--50694154 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
50693968 TACGTGTACT
* * * * *
50693978 GGGTACCATTAATTATAAAGGTGGTTGCTGTGTGCTGATTCCACTGGGTATGATTGATTATAAAG
1 GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
* *
50694043 GTGGTTGTTGTGTGCTGATTCCACC
66 GTGG-TGCTATGTGCTGA-TCCACC
* * *
50694068 GGGTACTATTAATTATAAAGGTGGTTGCTATGTGTTGATTCCACCGAGTATCATTGACTATAAGG
1 GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
50694133 GTGGTGCTATGTGCTGATCCAC
66 GTGGTGCTATGTGCTGATCCAC
50694155 TGTGTATCTG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 5 0.06
89 11 0.14
90 61 0.79
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.36
Consensus pattern (88 bp):
GGGTACCATTAATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTATCATTGACTATAAAG
GTGGTGCTATGTGCTGATCCACC
Found at i:50700819 original size:12 final size:11
Alignment explanation
Indices: 50700793--50700826 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
50700783 TAGACCCAAC
50700793 TTGAATTAATT
1 TTGAATTAATT
*
50700804 TTGAATCTATTT
1 TTGAAT-TAATT
50700816 TTGAATTAATT
1 TTGAATTAATT
50700827 CACTTGTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (11 bp):
TTGAATTAATT
Found at i:50702773 original size:44 final size:44
Alignment explanation
Indices: 50702707--50702825 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 44
50702697 TACCATGGTG
**
50702707 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-C
1 AATCTTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAGCCATC
* * *
50702750 AATCCTTATCTCTTTGAAGTTGCAATGGAGAAGATTAAAGCCATT
1 AAT-CTTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAGCCATC
* *
50702795 AATCTTATCTCTTTGAAGTTTCGGTGGAGCA
1 AATCTTATCTCTTTGAAGTTGCAGTGGAGCA
50702826 TATTGAAACA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.05
44 59 0.91
45 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCTTTGAAGTTGCAGTGGAGCAGATTAAAGCCATC
Found at i:50703083 original size:45 final size:42
Alignment explanation
Indices: 50703033--50703220 Score: 144
Period size: 45 Copynumber: 4.3 Consensus size: 42
50703023 GCTACAAACC
50703033 ACAAATCTTATACCCTCAAAGTTGCAGTAGAGCAGATTGAAGAT
1 ACAAATCTTAT-CCCT-AAAGTTGCAGTAGAGCAGATTGAAGAT
* * *
50703077 AGCAAATCTTATCGCTCTGAAGTTGCAGTAGAGCAGATTAAAGTT
1 A-CAAATCTTATC-C-CTAAAGTTGCAGTAGAGCAGATTGAAGAT
* * * * * *
50703122 ATAAACCTTACCCCTGAAGTTGCAGT-GAGACAGATTGATGGT
1 ACAAATCTTATCCCTAAAGTTGCAGTAGAG-CAGATTGAAGAT
* * ** * * *
50703164 ATAGATCTTACTTCCCTAAAGTTATAGTGGAGTAGATCGAAGAT
1 ACAAATCTTA--TCCCTAAAGTTGCAGTAGAGCAGATTGAAGAT
50703208 AGCAAATCTTATC
1 A-CAAATCTTATC
50703221 TTTCTGAACT
Statistics
Matches: 115, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 30 0.26
43 3 0.03
44 31 0.27
45 46 0.40
46 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (42 bp):
ACAAATCTTATCCCTAAAGTTGCAGTAGAGCAGATTGAAGAT
Found at i:50703174 original size:42 final size:42
Alignment explanation
Indices: 50703051--50703166 Score: 117
Period size: 42 Copynumber: 2.7 Consensus size: 42
50703041 TATACCCTCA
* * * * *
50703051 AAGTTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATCGCTCTG
1 AAGTTGCAGTAGAGCAGATTAAAGGTA-TAAACCTTA-C-CCCTG
*
50703096 AAGTTGCAGTAGAGCAGATTAAAGTTATAAACCTTACCCCTG
1 AAGTTGCAGTAGAGCAGATTAAAGGTATAAACCTTACCCCTG
* *
50703138 AAGTTGCAGT-GAGACAGATTGATGGTATA
1 AAGTTGCAGTAGAG-CAGATTAAAGGTATA
50703167 GATCTTACTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 3 0.05
42 26 0.42
43 1 0.02
44 7 0.11
45 25 0.40
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (42 bp):
AAGTTGCAGTAGAGCAGATTAAAGGTATAAACCTTACCCCTG
Found at i:50704977 original size:52 final size:54
Alignment explanation
Indices: 50704921--50705030 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 54
50704911 AACATTATTC
*
50704921 ATATTTGA-TTTATCAATTT-ATCATTCTTTTTAC-TTTAAAATATTTAAATTTA
1 ATATTT-ATTTTATCAATTTGATCATTATTTTTACTTTTAAAATATTTAAATTTA
* *
50704973 ATA-TTATTTTATCTATTTGTTCATTATTTTTACTTTTAAAATATTTAAATTTA
1 ATATTTATTTTATCAATTTGATCATTATTTTTACTTTTAAAATATTTAAATTTA
50705026 ATATT
1 ATATT
50705031 ATATGTATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
50 1 0.02
51 12 0.24
52 15 0.29
53 22 0.43
54 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (54 bp):
ATATTTATTTTATCAATTTGATCATTATTTTTACTTTTAAAATATTTAAATTTA
Found at i:50705026 original size:53 final size:55
Alignment explanation
Indices: 50704941--50705046 Score: 173
Period size: 53 Copynumber: 2.0 Consensus size: 55
50704931 TATCAATTTA
*
50704941 TCATTCTTTTTACTTTAAAATATTTAAATTTAATATTAT-T-T-TATCTATTTGT
1 TCATTATTTTTACTTTAAAATATTTAAATTTAATATTATATGTATATCTATTTGT
50704993 TCATTATTTTTACTTTTAAAATATTTAAATTTAATATTATATGTATATCTATTT
1 TCATTATTTTTAC-TTTAAAATATTTAAATTTAATATTATATGTATATCTATTT
50705047 ATCTCCAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
52 12 0.24
53 26 0.53
54 1 0.02
55 1 0.02
56 9 0.18
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (55 bp):
TCATTATTTTTACTTTAAAATATTTAAATTTAATATTATATGTATATCTATTTGT
Found at i:50713424 original size:4 final size:4
Alignment explanation
Indices: 50713411--50713456 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
50713401 AAGGTTGAAG
*
50713411 AAAT -AAT AAAT AAAT GAAT AAAT AAAT AAAT AAA- ATAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAA
50713457 ATAGTTTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 4 0.11
4 32 0.86
5 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:50714790 original size:44 final size:44
Alignment explanation
Indices: 50714682--50714904 Score: 227
Period size: 44 Copynumber: 5.0 Consensus size: 44
50714672 GATTTGTAAC
* * * *
50714682 TTGTAGCTTCAATCTATTCCACCGCAA-TGTC-AGAGAAATAAGATT
1 TTGTAGCTTCAATCTACTCCACTGTAACT-TCAAG-GAGATAAGA-T
* * *
50714727 TTCTATCTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGAT
* * *
50714771 TTGTAGCTTCAATCTGCTCCACTGCAACTTCATGGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGAT
* *
50714815 TCGTAGCTTCAATCTACTCCACTGTAACTT-TAGAGAGATAAGAT
1 TTGTAGCTTCAATCTACTCCACTGTAACTTCAAG-GAGATAAGAT
** * * * *
50714859 TCATAGCTTCAATCTATTCCACTGTAACTTTAGGGAGATACGAT
1 TTGTAGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGAT
50714903 TT
1 TT
50714905 ACTACGGTTA
Statistics
Matches: 152, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 116 0.76
45 32 0.21
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (44 bp):
TTGTAGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGAT
Found at i:50714853 original size:88 final size:86
Alignment explanation
Indices: 50714682--50714903 Score: 250
Period size: 88 Copynumber: 2.5 Consensus size: 86
50714672 GATTTGTAAC
* * * *
50714682 TTGTAGCTTCAATCTATTCCACCGCAA-TGTCAGAGAAATAAGATTTTCTATCTTCAATCTGCTC
1 TTGTAGCTTCAATCTATTCCACTGCAACT-TCAG-GAGATAAGA--TTCTAGCTTCAATCTACTC
50714746 CACTGTAACTTCAAGGAGATAAGAT
62 CACTGTAACTTCAAGGAGATAAGAT
**
50714771 TTGTAGCTTCAATCTGCTCCACTGCAACTTCATGGAGATAAGATTCGTAGCTTCAATCTACTCCA
1 TTGTAGCTTCAATCTATTCCACTGCAACTTCA-GGAGATAAGATTC-TAGCTTCAATCTACTCCA
*
50714836 CTGTAACTT-TAGAGAGATAAGAT
64 CTGTAACTTCAAG-GAGATAAGAT
** * * *
50714859 TCATAGCTTCAATCTATTCCACTGTAACTTTAGGGAGATACGATT
1 TTGTAGCTTCAATCTATTCCACTGCAACTTCA-GGAGATAAGATT
50714904 TACTACGGTT
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
87 5 0.04
88 72 0.63
89 35 0.31
90 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (86 bp):
TTGTAGCTTCAATCTATTCCACTGCAACTTCAGGAGATAAGATTCTAGCTTCAATCTACTCCACT
GTAACTTCAAGGAGATAAGAT
Found at i:50721645 original size:4 final size:4
Alignment explanation
Indices: 50721631--50721679 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
50721621 AAAAAGGTTG
* *
50721631 AATA AAT- AATA AATA AATA AATA ACTA AATA ACTA AA-A TAATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA -AATA AATA
50721678 AA
1 AA
50721680 ACACTTTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
3 4 0.11
4 33 0.87
5 1 0.03
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:50721659 original size:12 final size:11
Alignment explanation
Indices: 50721631--50721679 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
50721621 AAAAAGGTTG
50721631 AATAAATAATA
1 AATAAATAATA
50721642 AATAAATAAATA
1 AATAAAT-AATA
*
50721654 ACTAAATAACT-
1 AATAAATAA-TA
50721665 -A-AAATAATA
1 AATAAATAATA
50721674 AATAAA
1 AATAAA
50721680 ACACTTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
8 1 0.03
9 6 0.19
10 1 0.03
11 12 0.39
12 11 0.35
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAAATAATA
Found at i:50726884 original size:17 final size:17
Alignment explanation
Indices: 50726862--50726895 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50726852 ATGTTAATTC
50726862 AATAATATTTTTTTGAT
1 AATAATATTTTTTTGAT
50726879 AATAATATTTTTTTGAT
1 AATAATATTTTTTTGAT
50726896 TCATGTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
AATAATATTTTTTTGAT
Found at i:50740322 original size:26 final size:26
Alignment explanation
Indices: 50740293--50740344 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
50740283 AGGGACCTCT
50740293 CACATAGACAATCCTGGAAGACTTCC
1 CACATAGACAATCCTGGAAGACTTCC
* * *
50740319 CACATAGACAGTTCTGGCAGACTTCC
1 CACATAGACAATCCTGGAAGACTTCC
50740345 ACGTAGATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (26 bp):
CACATAGACAATCCTGGAAGACTTCC
Found at i:50740465 original size:26 final size:26
Alignment explanation
Indices: 50740436--50740555 Score: 105
Period size: 26 Copynumber: 4.6 Consensus size: 26
50740426 TTATTAAATG
50740436 GTCCTTGCAGACTTTCCCATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
* * * *
50740462 GTCCGTGCGGACCTTCCTATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
* * * * *
50740488 GTCCCTACAAACTTTCCCATCAGATG
1 GTCCTTGCAGACTTTCCCATTAGATA
** **
50740514 GTCCTTGTGGACTTTTTCATTAGATA
1 GTCCTTGCAGACTTTCCCATTAGATA
**
50740540 GTCCACGCAGACTTTC
1 GTCCTTGCAGACTTTC
50740556 AACATTTACA
Statistics
Matches: 68, Mismatches: 26, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (26 bp):
GTCCTTGCAGACTTTCCCATTAGATA
Found at i:50740554 original size:52 final size:52
Alignment explanation
Indices: 50740427--50740555 Score: 127
Period size: 52 Copynumber: 2.5 Consensus size: 52
50740417 GGACTTCCCT
* * * *
50740427 TATTAAATGGTCCTTGCAGACTTTCCCATTAGATAGTCCGTGCGGACCTTCC
1 TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
* * * * * **
50740479 TATTAGATAGTCCCTACAAACTTTCCCATCAGATGGTCCTTGTGGA-CTTTT
1 TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
50740530 TCATTAGATAGTCCAC-GCAGACTTTC
1 T-ATTAGATAGTCC-CTGCAGACTTTC
50740556 AACATTTACA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
51 4 0.06
52 57 0.92
53 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (52 bp):
TATTAGATAGTCCCTGCAGACTTTCCCATCAGATAGTCCGTGCGGACCTTCC
Found at i:50746621 original size:22 final size:23
Alignment explanation
Indices: 50746575--50746621 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
50746565 AACATTGAAG
*
50746575 AATTTCGATTATAATATATAGGA
1 AATTTCGATTATAATATATACGA
50746598 AATTT-GATTATAAGTAT-TACGA
1 AATTTCGATTATAA-TATATACGA
50746620 AA
1 AA
50746622 ATGATGTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (23 bp):
AATTTCGATTATAATATATACGA
Found at i:50746623 original size:23 final size:23
Alignment explanation
Indices: 50746575--50746623 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
50746565 AACATTGAAG
*
50746575 AATTTCGATTATAATATATAGGA
1 AATTTCGATTATAATATATAGAA
50746598 AATTT-GATTATAAGTAT-TACGAA
1 AATTTCGATTATAA-TATATA-GAA
50746621 AAT
1 AAT
50746624 GATGTCATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.45, C:0.04, G:0.12, T:0.39
Consensus pattern (23 bp):
AATTTCGATTATAATATATAGAA
Found at i:50757191 original size:22 final size:22
Alignment explanation
Indices: 50757159--50757200 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50757149 TATATAATTA
*
50757159 ATATTACTTGAATAGTTATGAG
1 ATATTACTTGAATAATTATGAG
*
50757181 ATATTAGTTGAATAATTATG
1 ATATTACTTGAATAATTATG
50757201 TCTCTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (22 bp):
ATATTACTTGAATAATTATGAG
Found at i:50757455 original size:127 final size:127
Alignment explanation
Indices: 50757292--50757545 Score: 499
Period size: 127 Copynumber: 2.0 Consensus size: 127
50757282 ATAGGAGCGA
*
50757292 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATCTTCTGC
1 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
50757357 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
66 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
50757419 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
1 GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
50757484 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
66 TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
50757546 TTATGCTATG
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 126 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.43
Consensus pattern (127 bp):
GATCTCATTCAGAAGACATACATAAAATTCTCAGAAGGTCTTTCTGTCTTTCCTCCATATTCTGC
TATTATTAGATTGTTTTATAAAGAATTTTTATAGTAATTCTTTATAGAAATTGATTTGCTTG
Found at i:50760060 original size:39 final size:40
Alignment explanation
Indices: 50759959--50760182 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
50759949 TTGAATGATG
* *
50759959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50759998 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50760039 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50760078 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
50760117 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50760156 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50760183 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50760134 original size:79 final size:79
Alignment explanation
Indices: 50759959--50760182 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
50759949 TTGAATGATG
* * * * *
50759959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
50760021 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
50760039 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
50760102 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
50760117 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
50760182 G
65 G
50760183 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:50760205 original size:79 final size:79
Alignment explanation
Indices: 50760046--50760215 Score: 186
Period size: 79 Copynumber: 2.2 Consensus size: 79
50760036 AATTCCGGGC
* * **
50760046 TAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
**
50760110 TACTAAATCTGGGT
66 TACTAAATCTCAGT
* *
50760124 TAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
50760188 G-TAGCTATATC-CAGT
64 GTTA-CTAAATCTCAGT
* *
50760203 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
50760216 TACGTGATTT
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
78 6 0.08
79 47 0.61
80 24 0.31
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCTCAGT
Found at i:50767541 original size:39 final size:40
Alignment explanation
Indices: 50767440--50767663 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
50767430 TTGAATGATG
* *
50767440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50767479 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50767520 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50767559 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
50767598 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50767637 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50767664 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50767615 original size:79 final size:79
Alignment explanation
Indices: 50767440--50767663 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 79
50767430 TTGAATGATG
* * * * *
50767440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
50767502 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
50767520 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
50767583 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
50767598 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
50767663 G
65 G
50767664 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:50767686 original size:79 final size:79
Alignment explanation
Indices: 50767527--50767696 Score: 186
Period size: 79 Copynumber: 2.2 Consensus size: 79
50767517 AATTCCGGGC
* * **
50767527 TAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
**
50767591 TACTAAATCTGGGT
66 TACTAAATCTCAGT
* *
50767605 TAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
50767669 G-TAGCTATATC-CAGT
64 GTTA-CTAAATCTCAGT
* *
50767684 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
50767697 TACGTGATTT
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
78 6 0.08
79 47 0.61
80 24 0.31
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCTCAGT
Found at i:50770348 original size:25 final size:25
Alignment explanation
Indices: 50770312--50770375 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
50770302 AATCGATATA
* * **
50770312 CTCACTCAAGCTGTAGATTGGTATG
1 CTCACACAAGCTGTAAATCAGTATG
* *
50770337 CTCTCACAAGCTATAAATCAGTATG
1 CTCACACAAGCTGTAAATCAGTATG
50770362 CTCACACAAGCTGT
1 CTCACACAAGCTGT
50770376 GGGTCGAAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (25 bp):
CTCACACAAGCTGTAAATCAGTATG
Found at i:50773280 original size:27 final size:27
Alignment explanation
Indices: 50773243--50773450 Score: 213
Period size: 27 Copynumber: 7.7 Consensus size: 27
50773233 CTTAGGCTAA
*
50773243 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
50773270 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * * * *
50773297 AAAATTATCGAAATACCATCGAATGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
50773324 AAAATTACCAAAATACCC-CCATAGGG-
1 AAAATTACCAAAATACCCTCGA-AGGGT
*
50773350 AAAATTTACTAAAATACCCTCGAAGGGT
1 AAAA-TTACCAAAATACCCTCGAAGGGT
* * * *
50773378 AAAATGACTAATATACCCTTCGCAGGGT
1 AAAATTACCAAAATACCC-TCGAAGGGT
* * *
50773406 AAAATGATCAAAATACCCCCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* *
50773433 AAAATGACTAAAATACCC
1 AAAATTACCAAAATACCC
50773451 CCATATGGTA
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.04
27 119 0.77
28 29 0.19
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGAAGGGT
Found at i:50773447 original size:82 final size:82
Alignment explanation
Indices: 50773243--50773476 Score: 235
Period size: 82 Copynumber: 2.9 Consensus size: 82
50773233 CTTAGGCTAA
* * * ** * *
50773243 AAAATTACCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGA
1 AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGAAGGGTAAAATGA-CTA
*
50773308 A-ATA-CCATCGAATGAT
65 ATATACCCATCGAAGGAT
*
50773324 AAAATTACCAAAATACCCCC-ATAGGG-AAAATTTACTAAAATACCCTCGAAGGGTAAAATGACT
1 AAAATGACCAAAATACCCCCGA-AGGGTAAAA-TTACTAAAATACCCTCGAAGGGTAAAATGACT
* * *
50773387 AATATACCCTTCGCAGGGT
64 AATATACCCATCGAAGGAT
* * * * * *
50773406 AAAATGATCAAAATACCCCCGAAGGGTAAAATGACTAAAATACCC-CCATATGGTAAAATGATTG
1 AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGA-AGGGTAAAATGACTA
50773470 ATATACC
65 ATATACC
50773477 TTAGGAGTTG
Statistics
Matches: 129, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
80 8 0.06
81 54 0.42
82 62 0.48
83 5 0.04
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.21
Consensus pattern (82 bp):
AAAATGACCAAAATACCCCCGAAGGGTAAAATTACTAAAATACCCTCGAAGGGTAAAATGACTAA
TATACCCATCGAAGGAT
Found at i:50773460 original size:27 final size:26
Alignment explanation
Indices: 50773323--50773466 Score: 132
Period size: 27 Copynumber: 5.3 Consensus size: 26
50773313 CATCGAATGA
* *
50773323 TAAAATTACCAAAATACCCCCATAGGG
1 TAAAATGACTAAAATACCCCCA-AGGG
* *
50773350 -AAAATTTACTAAAATACCCTCGAAGGG
1 TAAAA-TGACTAAAATACCC-CCAAGGG
*
50773377 TAAAATGACTAATATACCCTTCGC-AGGG
1 TAAAATGACTAAAATACCC--C-CAAGGG
50773405 TAAAATGA-TCAAAATACCCCCGAAGGG
1 TAAAATGACT-AAAATACCCCC-AAGGG
*
50773432 TAAAATGACTAAAATACCCCCATATGG
1 TAAAATGACTAAAATACCCCCA-AGGG
50773459 TAAAATGA
1 TAAAATGA
50773467 TTGATATACC
Statistics
Matches: 100, Mismatches: 7, Indels: 20
0.79 0.06 0.16
Matches are distributed among these distances:
25 1 0.01
26 6 0.06
27 64 0.64
28 29 0.29
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (26 bp):
TAAAATGACTAAAATACCCCCAAGGG
Found at i:50773724 original size:26 final size:26
Alignment explanation
Indices: 50773648--50773725 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
50773638 ACAAATACTG
* * * * *
50773648 TTACTGGTAACTTTGCTACGTTACTG
1 TTACTGGCAACTTTGCTGCGATATTA
* * *
50773674 TTATTGGCAGCTCTGCTGC-ATTATTA
1 TTACTGGCAACTTTGCTGCGA-TATTA
50773700 TTACTGGCAACTTTGCTGCGATATTA
1 TTACTGGCAACTTTGCTGCGATATTA
50773726 GTGTGTTGGC
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
26 38 0.97
27 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (26 bp):
TTACTGGCAACTTTGCTGCGATATTA
Found at i:50773887 original size:22 final size:24
Alignment explanation
Indices: 50773834--50773882 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
50773824 TATTGTTTAC
*
50773834 TGTACTGGGCTAAAGCCCACATTG
1 TGTACTGAGCTAAAGCCCACATTG
*
50773858 TGTACTGAGCTAAGGCCCACATTG
1 TGTACTGAGCTAAAGCCCACATTG
50773882 T
1 T
50773883 ACTGATACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (24 bp):
TGTACTGAGCTAAAGCCCACATTG
Found at i:50780817 original size:27 final size:27
Alignment explanation
Indices: 50780779--50781026 Score: 268
Period size: 27 Copynumber: 9.2 Consensus size: 27
50780769 CCTGGGCTAA
**
50780779 AAAATTACCAAAATACCCTCGAAGTTT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
50780806 AAAATTATCAAAATACACTAGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
50780833 AAACTTACCGAAATACCTTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* *
50780860 AAAATTACCGAAATATCCTCGAAGGGT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
50780887 AAAATTATCGAAATACCC-CCATAGGGT
1 AAAATTACCAAAATACCCTCGA-AGGGT
*
50780914 AAAATTACCAAAATACCCTCGAAGGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
*
50780941 AAAATGACCAAAATACTCCT-GAAGGGT
1 AAAATTACCAAAATAC-CCTCGAAGGGT
* *
50780968 AAAATGACCAAAATACCCTCGAAGGAT
1 AAAATTACCAAAATACCCTCGAAGGGT
* * *
50780995 AAAATGACTAAAATACCC-CCATAGGGT
1 AAAATTACCAAAATACCCTCGA-AGGGT
50781022 AAAAT
1 AAAAT
50781027 GACTGATATA
Statistics
Matches: 189, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.04
27 177 0.94
28 5 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGAAGGGT
Found at i:50782592 original size:17 final size:18
Alignment explanation
Indices: 50782559--50782599 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
50782549 AAGGTAACCA
50782559 TTTATATTTCTATTAGT-T
1 TTTA-ATTTCTATTAGTCT
50782577 TTTAATTT-TATCTAGTCT
1 TTTAATTTCTAT-TAGTCT
50782595 TTTAA
1 TTTAA
50782600 ATGAAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 3 0.14
17 8 0.38
18 10 0.48
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATTTCTATTAGTCT
Found at i:50783649 original size:17 final size:17
Alignment explanation
Indices: 50783629--50783690 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 17
50783619 TTGAATGTTA
50783629 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
50783646 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
50783667 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
50783685 TGTGAT
1 TGTGAT
50783691 ATAACCTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
17 14 0.39
18 5 0.14
19 2 0.06
20 2 0.06
21 5 0.14
22 8 0.22
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.47
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:50783657 original size:39 final size:39
Alignment explanation
Indices: 50783602--50783737 Score: 218
Period size: 39 Copynumber: 3.5 Consensus size: 39
50783592 CATATTTTTA
*
50783602 AGTATTGTGATGTATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
50783641 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
** *
50783680 AGTATTGTGATATAACCTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
* *
50783719 TGTAATGTGATATATGCTT
1 AGTATTGTGATATATGCTT
50783738 AAAACTGTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
Found at i:50789981 original size:39 final size:39
Alignment explanation
Indices: 50789926--50790066 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
50789916 AACATGTTTT
*
50789926 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
50789965 TGAGTATTGTGGTATATGCTTAAATTTTATATGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
50790004 TGAGTATTGTGACATATCCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
50790043 TGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
50790067 AATGAATATG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:50792627 original size:13 final size:13
Alignment explanation
Indices: 50792602--50792634 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50792592 TTTGTTTATC
*
50792602 TTTA-TTTATTTA
1 TTTATTTTAGTTA
50792614 TTTATTTTAGTTA
1 TTTATTTTAGTTA
50792627 TTTATTTT
1 TTTATTTT
50792635 TAGTCCTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTATTTTAGTTA
Found at i:50792627 original size:17 final size:18
Alignment explanation
Indices: 50792591--50792633 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
50792581 TGTCTAATTC
* *
50792591 ATTTGTTTATCTTTATTT
1 ATTTATTTATCTTTAGTT
50792609 ATTTATTTAT-TTTAGTT
1 ATTTATTTATCTTTAGTT
50792626 ATTTATTT
1 ATTTATTT
50792634 TTAGTCCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (18 bp):
ATTTATTTATCTTTAGTT
Found at i:50793802 original size:56 final size:57
Alignment explanation
Indices: 50793716--50793826 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 57
50793706 AGAAATGGTG
* * *
50793716 AAAATGGAGAAATAGGAAACATTTGGAAATGATTATGGTTTTCTCAAAAATGAAATT
1 AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAATT
* * *
50793773 AAAATAGAGAAAT-CGAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAA
1 AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAA
50793827 ATGACCTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 36 0.75
57 12 0.25
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.29
Consensus pattern (57 bp):
AAAATAGAGAAATACGAAACATTTGGAAATGAATATGGTTTTCTCAAAAATGAAATT
Found at i:50795249 original size:28 final size:28
Alignment explanation
Indices: 50795217--50795272 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50795207 TTCATGCTTG
50795217 GTCTGTTAATTTATTTTTAAGATCCAAA
1 GTCTGTTAATTTATTTTTAAGATCCAAA
50795245 GTCTGTTAATTTATTTTTAAGATCCAAA
1 GTCTGTTAATTTATTTTTAAGATCCAAA
50795273 CTATCAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (28 bp):
GTCTGTTAATTTATTTTTAAGATCCAAA
Found at i:50797720 original size:16 final size:16
Alignment explanation
Indices: 50797699--50797744 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
50797689 GGGGTCGAAC
50797699 TTCTCTAATTCAAATT
1 TTCTCTAATTCAAATT
*
50797715 TTCTCTAATTTAAATT
1 TTCTCTAATTCAAATT
50797731 TTCT-TGAATTCAAA
1 TTCTCT-AATTCAAA
50797745 GCTATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.50
Consensus pattern (16 bp):
TTCTCTAATTCAAATT
Found at i:50798645 original size:7 final size:7
Alignment explanation
Indices: 50798633--50798681 Score: 80
Period size: 7 Copynumber: 7.0 Consensus size: 7
50798623 GTAAATAAAT
50798633 ATTATTA
1 ATTATTA
50798640 ATTATTA
1 ATTATTA
50798647 ATTATTA
1 ATTATTA
50798654 ATTATTA
1 ATTATTA
*
50798661 ATTATTT
1 ATTATTA
*
50798668 ATAATTA
1 ATTATTA
50798675 ATTATTA
1 ATTATTA
50798682 TTCAATTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATTA
Found at i:50798690 original size:21 final size:21
Alignment explanation
Indices: 50798633--50798690 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
50798623 GTAAATAAAT
*
50798633 ATTATTAATT-ATTAATTATTA
1 ATTATTAATTAATT-ATAATTA
*
50798654 ATTATTAATTATTTATAATTA
1 ATTATTAATTAATTATAATTA
50798675 ATTATT-ATTCAATTAT
1 ATTATTAATT-AATTAT
50798691 GTTTAAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 3 0.09
21 27 0.84
22 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTATTAATTAATTATAATTA
Found at i:50798737 original size:20 final size:21
Alignment explanation
Indices: 50798699--50798737 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50798689 ATGTTTAAAT
*
50798699 AAAATTATTAGTATATATTTA
1 AAAATTATTACTATATATTTA
*
50798720 AAAATTTTTACTAT-TATT
1 AAAATTATTACTATATATT
50798738 GTTGGTACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
AAAATTATTACTATATATTTA
Found at i:50802029 original size:35 final size:34
Alignment explanation
Indices: 50801977--50802042 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
50801967 CTATGAAAAT
50801977 TTTAACTTTAAAATTAAATATAA-AAATTAATGAA
1 TTTAACTTTAAAATTAAA-ATAATAAATTAATGAA
* *
50802011 TTTAATTTTAGAATTTAAAATAATAAATTAAT
1 TTTAACTTTA-AAATTAAAATAATAAATTAAT
50802043 AACACAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (34 bp):
TTTAACTTTAAAATTAAAATAATAAATTAATGAA
Found at i:50802188 original size:19 final size:19
Alignment explanation
Indices: 50802166--50802231 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
50802156 ACAGTAACGA
*
50802166 AAAATTAAACACCACACAT
1 AAAATTAAACACCAAACAT
* * *
50802185 AAAATTACACAGACAGTAACAA
1 AAAATTAAACA-CCA--AACAT
*
50802207 AAAATTAAACACCATACAT
1 AAAATTAAACACCAAACAT
50802226 AAAATT
1 AAAATT
50802232 TATCAAATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 19 0.53
20 2 0.06
21 2 0.06
22 13 0.36
ACGTcount: A:0.59, C:0.20, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAATTAAACACCAAACAT
Found at i:50802211 original size:22 final size:22
Alignment explanation
Indices: 50802150--50802213 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
50802140 AAAAATTAAA
*
50802150 ACACAGACAGTAACGAAAAATT
1 ACACAGACAGTAACAAAAAATT
* * * *
50802172 AAACA-CCA--CACATAAAATT
1 ACACAGACAGTAACAAAAAATT
50802191 ACACAGACAGTAACAAAAAATT
1 ACACAGACAGTAACAAAAAATT
50802213 A
1 A
50802214 AACACCATAC
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 12 0.40
20 2 0.07
21 2 0.07
22 14 0.47
ACGTcount: A:0.58, C:0.20, G:0.08, T:0.14
Consensus pattern (22 bp):
ACACAGACAGTAACAAAAAATT
Found at i:50802252 original size:41 final size:41
Alignment explanation
Indices: 50802150--50802231 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
50802140 AAAAATTAAA
*
50802150 ACACAGACAGTAACGAAAAATTAAACACCACACATAAAATT
1 ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
*
50802191 ACACAGACAGTAACAAAAAATTAAACACCATACATAAAATT
1 ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
50802232 TATCAAATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.57, C:0.21, G:0.06, T:0.16
Consensus pattern (41 bp):
ACACAGACAGTAACAAAAAATTAAACACCACACATAAAATT
Found at i:50802565 original size:30 final size:30
Alignment explanation
Indices: 50802503--50802567 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
50802493 ACTTTTCCCT
* * **
50802503 CAAAACTTTTACTCCTTCCCACTTTCCCCC
1 CAAAACTTTTACTCCCTCCCACTCTCAACC
50802533 CAAAACTTTTACTCCCCTCCC-CTCTCAACC
1 CAAAACTTTTACT-CCCTCCCACTCTCAACC
50802563 CAAAA
1 CAAAA
50802568 TCCATTTCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.26, C:0.46, G:0.00, T:0.28
Consensus pattern (30 bp):
CAAAACTTTTACTCCCTCCCACTCTCAACC
Found at i:50802809 original size:18 final size:17
Alignment explanation
Indices: 50802783--50802840 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
50802773 ACTCCCCCTA
*
50802783 TTTACTTTCCCTCAAACT
1 TTTATTTTCCC-CAAACT
*
50802801 TTTATTTT-CCAAAACTT
1 TTTATTTTCCCCAAAC-T
50802818 TTTATTTTTCCCCTAAACT
1 TTTA-TTTTCCCC-AAACT
50802837 TTTA
1 TTTA
50802841 CTTCTCACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 4 0.12
17 7 0.21
18 11 0.33
19 7 0.21
20 4 0.12
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTATTTTCCCCAAACT
Found at i:50803132 original size:18 final size:18
Alignment explanation
Indices: 50803111--50803145 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50803101 AAAAATCATA
50803111 TTTTTACATT-TAATATAT
1 TTTTTA-ATTCTAATATAT
50803129 TTTTTAATTCTAATATA
1 TTTTTAATTCTAATATA
50803146 CATAGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAATTCTAATATAT
Found at i:50803844 original size:23 final size:23
Alignment explanation
Indices: 50803794--50803845 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
50803784 GTTAGGTGTC
* *
50803794 AGTATAAAGACATGTCAGATATG
1 AGTATGAAGACATGTCAGAGATG
* * *
50803817 GGTATGAAGGCATGTCTGAGATG
1 AGTATGAAGACATGTCAGAGATG
50803840 AGTATG
1 AGTATG
50803846 TTCAATTGCA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (23 bp):
AGTATGAAGACATGTCAGAGATG
Found at i:50808279 original size:146 final size:148
Alignment explanation
Indices: 50808105--50808401 Score: 395
Period size: 146 Copynumber: 2.0 Consensus size: 148
50808095 TTTGTGGCGT
* * * * * *
50808105 CGCTGTTGTTTATCTATTGCGGCGTTTTTAAT-AAAAACGTCACAAAAAATTATTTTATTTGGAA
1 CGCTATTGCTTATCTATTGCGGCATTTTT-ATGAAAAACGCCACAAAAAATTACTTTATTTGAAA
* *
50808169 TAAAACGACATTGTTTTGTTAT-ATAAAATGG-CGCTA-TTTTTTAAAATAAAATTATTTTTTGT
65 TAAAACGACAATGTTTTGCTATGATAAAA-GGACGCTATTTTTTTAAAATAAAATTATTTTTTGT
50808231 GGCGTTTTTAAAAAAAACGC
129 GGCGTTTTTAAAAAAAACGC
* * * *
50808251 CGCTATTGCTTATCTTTTGTGGCATTTTTATGAAAAACGCCGCAACAAATTACTTTATTTGAAAT
1 CGCTATTGCTTATCTATTGCGGCATTTTTATGAAAAACGCCACAAAAAATTACTTTATTTGAAAT
* *
50808316 AAAACGACAATGTTTTGCTATGCTAAAAGGACGCTATTTTTTTAAAGTAAAATTATTTTTTGTGG
66 AAAACGACAATGTTTTGCTATGATAAAAGGACGCTATTTTTTTAAAATAAAATTATTTTTTGTGG
* * *
50808381 CTTTTTTTATAAAAACGC
131 CGTTTTTAAAAAAAACGC
50808399 CGC
1 CGC
50808402 AAAAAATTAT
Statistics
Matches: 130, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
145 2 0.02
146 73 0.56
147 10 0.08
148 45 0.35
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (148 bp):
CGCTATTGCTTATCTATTGCGGCATTTTTATGAAAAACGCCACAAAAAATTACTTTATTTGAAAT
AAAACGACAATGTTTTGCTATGATAAAAGGACGCTATTTTTTTAAAATAAAATTATTTTTTGTGG
CGTTTTTAAAAAAAACGC
Found at i:50809923 original size:41 final size:40
Alignment explanation
Indices: 50809866--50810188 Score: 353
Period size: 41 Copynumber: 8.0 Consensus size: 40
50809856 ATAAAAAAGG
* * * *
50809866 GCATTAGTGGCCCTTCTTCAAAAATGCCGCTAAAGGGCCGA
1 GCATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGGCCCGA
*
50809907 GCATTAGCGGCGCTTCTTCAAAAA-GCCGCTAAAAGGCCCCA
1 GCATTAGCGGCGCTT-TTCAAAAACGCCGCT-AAAGGCCCGA
** *
50809948 GCATTAGCGGCGC-TACCAAAAACGTCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCCGA
* * * *
50809987 GCATTAGCGGCACTTTATAAAAAACGTCGCTAAAGACCCGA
1 GCATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGGCCCGA
* *
50810028 GCATTAGCGGTGCTTTATCAAAAACGCCGCTAAAGGCCCAA
1 GCATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGGCCCGA
* * *
50810069 ACATTAGCGGCGTTTTTTTAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCG-CTTTTCAAAAACGCCGCTAAAGGCCCGA
* ** *
50810110 GCATTAGCGACGCTTTTTTAAAATGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCCGA
* * *
50810150 GCATTAGCAGCACTTTTTCAAAAATGCCGCTAAAGGCCC
1 GCATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGGCCC
50810189 CAAAAACTCA
Statistics
Matches: 242, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
39 27 0.11
40 48 0.20
41 164 0.68
42 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.20
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:50810373 original size:12 final size:12
Alignment explanation
Indices: 50810356--50810381 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50810346 GTTTTTTCCC
50810356 AAACGCCGCTAA
1 AAACGCCGCTAA
50810368 AAACGCCGCTAA
1 AAACGCCGCTAA
50810380 AA
1 AA
50810382 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:50814586 original size:21 final size:21
Alignment explanation
Indices: 50814560--50814620 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
50814550 TTAAAAACAG
*
50814560 CTGTGGCGGTGAGATTAGTTA
1 CTGTGGCGGTGAGATTAGATA
*
50814581 CTGTGGCGGTGAGATTGGATA
1 CTGTGGCGGTGAGATTAGATA
* **
50814602 CTGTAGCAATGAGATTAGA
1 CTGTGGCGGTGAGATTAGA
50814621 AACAATTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.36, T:0.30
Consensus pattern (21 bp):
CTGTGGCGGTGAGATTAGATA
Found at i:50818301 original size:13 final size:13
Alignment explanation
Indices: 50818283--50818310 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50818273 ATATTTCATC
50818283 TTTAAGAGGAGAG
1 TTTAAGAGGAGAG
50818296 TTTAAGAGGAGAG
1 TTTAAGAGGAGAG
50818309 TT
1 TT
50818311 GGATAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (13 bp):
TTTAAGAGGAGAG
Found at i:50822936 original size:30 final size:30
Alignment explanation
Indices: 50822895--50822955 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
50822885 CTACTTCGGT
*
50822895 TGGTAGGGACTATCGCACCTCAAGCCAAAC
1 TGGTAGGGACTACCGCACCTCAAGCCAAAC
*
50822925 TGGTAGTGACTACCGCACCTCAAGCCAAAC
1 TGGTAGGGACTACCGCACCTCAAGCCAAAC
50822955 T
1 T
50822956 CGCTTACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (30 bp):
TGGTAGGGACTACCGCACCTCAAGCCAAAC
Found at i:50825113 original size:39 final size:39
Alignment explanation
Indices: 50825063--50825158 Score: 165
Period size: 39 Copynumber: 2.5 Consensus size: 39
50825053 GGAGTTGTAA
* *
50825063 GTGACTATTCATCTACATCACTTCAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
*
50825102 GTGACTATTCATCTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
50825141 GTGACTATTCATCTACAT
1 GTGACTATTCATCTACAT
50825159 GCATGTGTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:50825192 original size:16 final size:16
Alignment explanation
Indices: 50825171--50825225 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
50825161 ATGTGTGTAA
50825171 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
50825187 CTCTTCA-CATTTCTAA--
1 CTCTTCATC--TTC-AAGT
50825203 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
50825219 CTCTTCA
1 CTCTTCA
50825226 CATACTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
14 2 0.06
15 4 0.12
16 21 0.64
17 4 0.12
18 2 0.06
ACGTcount: A:0.20, C:0.33, G:0.04, T:0.44
Consensus pattern (16 bp):
CTCTTCATCTTCAAGT
Found at i:50825209 original size:32 final size:32
Alignment explanation
Indices: 50825168--50825228 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
50825158 TGCATGTGTG
50825168 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
50825200 TAACTCTTCATCTTCAAGTCTCTTCACAT
1 TAACTCTTCATCTTCAAGTCTCTTCACAT
50825229 ACTTAGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.03, T:0.43
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAGTCTCTTCACATTTC
Found at i:50829554 original size:43 final size:41
Alignment explanation
Indices: 50829506--50829615 Score: 129
Period size: 39 Copynumber: 2.7 Consensus size: 41
50829496 CTTCATCACA
* *
50829506 TATAGGAGTTGTAAGTGACTATTCATCTACATCACTTCAGTGC
1 TATAGGAGTTGT--GTGACTATTCATCTACATCACTTAAATGC
* *
50829549 TATAGGAG-T-TGTGACTATTTATCTTCATCACTTAAATGC
1 TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
*
50829588 TATAGGAG-T-TGTGAGTATTCATCTACAT
1 TATAGGAGTTGTGTGACTATTCATCTACAT
50829616 GCATGTGTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
39 50 0.83
41 1 0.02
42 1 0.02
43 8 0.13
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (41 bp):
TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
Found at i:50829578 original size:39 final size:39
Alignment explanation
Indices: 50829520--50829615 Score: 147
Period size: 39 Copynumber: 2.5 Consensus size: 39
50829510 GGAGTTGTAA
* *
50829520 GTGACTATTCATCTACATCACTTCAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
* *
50829559 GTGACTATTTATCTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
*
50829598 GTGAGTATTCATCTACAT
1 GTGACTATTCATCTACAT
50829616 GCATGTGTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:50829649 original size:16 final size:16
Alignment explanation
Indices: 50829628--50829682 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
50829618 ATGTGTGTAA
50829628 CTCTTCATCTTCAAGT
1 CTCTTCATCTTCAAGT
50829644 CTCTTCA-CATTTCTAA--
1 CTCTTCATC--TTC-AAGT
*
50829660 CTCTTCATTTTCAAGT
1 CTCTTCATCTTCAAGT
50829676 CTCTTCA
1 CTCTTCA
50829683 CATACCTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
14 2 0.06
15 4 0.12
16 21 0.66
17 3 0.09
18 2 0.06
ACGTcount: A:0.20, C:0.31, G:0.04, T:0.45
Consensus pattern (16 bp):
CTCTTCATCTTCAAGT
Found at i:50829666 original size:32 final size:32
Alignment explanation
Indices: 50829625--50829685 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
50829615 TGCATGTGTG
50829625 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
1 TAACTCTTCATCTTCAAGTCTCTTCACATTTC
*
50829657 TAACTCTTCATTTTCAAGTCTCTTCACAT
1 TAACTCTTCATCTTCAAGTCTCTTCACAT
50829686 ACCTAGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.23, C:0.30, G:0.03, T:0.44
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAGTCTCTTCACATTTC
Found at i:50831399 original size:20 final size:20
Alignment explanation
Indices: 50831337--50831416 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
50831327 ACTTTCAGGC
* * * *
50831337 TATGACTCAACATATGTTGC
1 TATGGCTCAACATAGGCTGT
*
50831357 TATGGCTCAACACAAGAGCTGT
1 TATGGCTCAACA-TAG-GCTGT
50831379 TATGGCTCAACATAGGCTGT
1 TATGGCTCAACATAGGCTGT
*
50831399 TATGGCTCAACACAGGCT
1 TATGGCTCAACATAGGCT
50831417 ACGTGTTGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
20 33 0.65
21 3 0.06
22 15 0.29
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (20 bp):
TATGGCTCAACATAGGCTGT
Found at i:50836518 original size:26 final size:25
Alignment explanation
Indices: 50836470--50836521 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
50836460 CATGTTTTCT
* *
50836470 TCTAAATCTAACATAAAATTAAAAA
1 TCTAAATCTAAAATAAAACTAAAAA
*
50836495 TCTAAATCCTAAAATATAACTAAAAA
1 TCTAAAT-CTAAAATAAAACTAAAAA
50836521 T
1 T
50836522 AAAAACAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (25 bp):
TCTAAATCTAAAATAAAACTAAAAA
Found at i:50838150 original size:33 final size:33
Alignment explanation
Indices: 50838111--50838174 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
50838101 TCCGCACAGA
50838111 AGAGATAGTCCACTAGGACAGTAAACACAGAAT
1 AGAGATAGTCCACTAGGACAGTAAACACAGAAT
* *
50838144 AGAGATAGTCCATTGGGACAGTAAACACAGA
1 AGAGATAGTCCACTAGGACAGTAAACACAGA
50838175 GCTAGTCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (33 bp):
AGAGATAGTCCACTAGGACAGTAAACACAGAAT
Found at i:50844844 original size:29 final size:29
Alignment explanation
Indices: 50844802--50844859 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
50844792 CTCGTACAGG
50844802 ATTCGGATGATGTTACCGTTTGTTTCTCT
1 ATTCGGATGATGTTACCGTTTGTTTCTCT
50844831 ATTCGGATGATGTTACCGTTTGTTTCTCT
1 ATTCGGATGATGTTACCGTTTGTTTCTCT
50844860 TGAAAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (29 bp):
ATTCGGATGATGTTACCGTTTGTTTCTCT
Found at i:50845732 original size:2 final size:2
Alignment explanation
Indices: 50845725--50845749 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50845715 CTTCTAGAAT
50845725 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
50845750 ATTTGACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50846151 original size:23 final size:23
Alignment explanation
Indices: 50846125--50846175 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
50846115 ACCTACTTTC
* *
50846125 TTACTGTAATAATTTTCGGGGTA
1 TTACAGTAATAATTTTCGGGATA
*
50846148 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAATAATTTTCGGGATA
50846171 TTACA
1 TTACA
50846176 TCGTTGGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (23 bp):
TTACAGTAATAATTTTCGGGATA
Found at i:50856814 original size:20 final size:20
Alignment explanation
Indices: 50856789--50856826 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
50856779 CGGGTGTGAC
*
50856789 ACTATGGCTTAACATAGGCT
1 ACTATGGCTCAACATAGGCT
50856809 ACTATGGCTCAACATAGG
1 ACTATGGCTCAACATAGG
50856827 AATGTCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (20 bp):
ACTATGGCTCAACATAGGCT
Found at i:50859264 original size:4 final size:4
Alignment explanation
Indices: 50859255--50859281 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
50859245 TCTATTGTAT
50859255 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
50859282 TTATCTACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:50860198 original size:28 final size:29
Alignment explanation
Indices: 50860153--50860224 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 29
50860143 TTCACTTTTT
* ** *
50860153 TATATATGTTATTTATTTTGAA-TATATG
1 TATATATATTATCCATTTTAAATTATATG
50860181 TATATATATTATCCATTTTAAATTTATATG
1 TATATATATTATCCATTTTAAA-TTATATG
50860211 TACATATATATTAT
1 T--ATATATATTAT
50860225 TTATTTCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 18 0.50
30 7 0.19
32 11 0.31
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (29 bp):
TATATATATTATCCATTTTAAATTATATG
Found at i:50862475 original size:24 final size:25
Alignment explanation
Indices: 50862433--50862490 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
50862423 ATGTCTCTTT
*
50862433 TTACA-TTCATTCCATTCATCTGCA
1 TTACATTTCATTACATTCATCTGCA
*
50862457 TTACATTTCATTACA-TCATTTGCA
1 TTACATTTCATTACATTCATCTGCA
*
50862481 -TAAATTTCAT
1 TTACATTTCAT
50862491 GAAAGAGCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.30
24 13 0.43
25 8 0.27
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.45
Consensus pattern (25 bp):
TTACATTTCATTACATTCATCTGCA
Found at i:50865402 original size:18 final size:18
Alignment explanation
Indices: 50865363--50865428 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 18
50865353 AATATTTGAA
50865363 AAAAAAG-AGAAAAGAAAGG
1 AAAAAAGAAGAAAAG-AA-G
50865382 AAAAGAAGAA-AAAAGAAG
1 AAAA-AAGAAGAAAAGAAG
*
50865400 AAAGAAAGAAAGAAGAAAAAG
1 AAA-AAAG-AAGAA-AAGAAG
50865421 AAAAAAGA
1 AAAAAAGA
50865429 GAGGCCAAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
18 7 0.17
19 10 0.25
20 14 0.35
21 9 0.22
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAGAAAAGAAG
Found at i:50865411 original size:31 final size:30
Alignment explanation
Indices: 50865360--50865428 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
50865350 AAAAATATTT
* *
50865360 GAAAAAA-AAGAGAAAAGAAAGGAA-AAGAA
1 GAAAAAAGAAGAAAAAAGAAA-GAAGAAAAA
50865389 GAAAAAAGAAGAAAGAAAGAAAGAAGAAAAA
1 GAAAAAAGAAGAAA-AAAGAAAGAAGAAAAA
50865420 GAAAAAAGA
1 GAAAAAAGA
50865429 GAGGCCAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 7 0.20
30 8 0.23
31 20 0.57
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (30 bp):
GAAAAAAGAAGAAAAAAGAAAGAAGAAAAA
Found at i:50867142 original size:3 final size:3
Alignment explanation
Indices: 50867134--50867194 Score: 70
Period size: 3 Copynumber: 19.7 Consensus size: 3
50867124 ATAATCAAAT
* *
50867134 ATA ATA ATA ACA ATA ATAA ATA GTA ATA ATA ATA ATA ATA ATA GCA-A
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA --ATA
50867181 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
50867195 TAAGTGATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 1 0.02
3 44 0.88
4 4 0.08
5 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:50867149 original size:22 final size:22
Alignment explanation
Indices: 50867124--50867194 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
50867114 TAACACATAT
50867124 ATAATCAAATA-TAATAATAACA
1 ATAAT-AAATAGTAATAATAACA
*
50867146 ATAATAAATAGTAATAATAATA
1 ATAATAAATAGTAATAATAACA
* *
50867168 ATAAT-AATAGCAAATAATAATA
1 ATAATAAATAG-TAATAATAACA
50867190 ATAAT
1 ATAAT
50867195 TAAGTGATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.22
22 35 0.78
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (22 bp):
ATAATAAATAGTAATAATAACA
Found at i:50869385 original size:45 final size:45
Alignment explanation
Indices: 50869288--50869378 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
50869278 AGAACAGATC
* * *
50869288 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGGAGCAG
1 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
*
50869333 ACTGAAGATAGCAGATCTTGCCTTCTTGTACTGACAGCGAAGCAA
1 ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
50869378 A
1 A
50869379 TCGAAGACAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (45 bp):
ACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAA
Found at i:50869474 original size:44 final size:44
Alignment explanation
Indices: 50869426--50869622 Score: 163
Period size: 44 Copynumber: 4.5 Consensus size: 44
50869416 AAACCAATCC
*
50869426 TATCTCCCTAAAGTTGTAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
* * * * * *
50869470 TATCTCTCTGAAGTTGCAGTGGAGTAGA-CAGAAGA-AATCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTA-AA-ACCA-CAGATCT
* *
50869514 TATCTTCCTAAAGTTGCAGTGGAGTGAATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
* * * * * * *
50869558 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCACATC-CAG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
* *
50869599 TATCTCCTTGAAGTTGCAGTGGAG
1 TATCTCCCTAAAGTTGCAGTGGAG
50869623 CAGACAAAAG
Statistics
Matches: 120, Mismatches: 27, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
41 24 0.20
42 3 0.03
43 8 0.07
44 81 0.68
45 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
Found at i:50869545 original size:88 final size:88
Alignment explanation
Indices: 50869420--50869714 Score: 298
Period size: 88 Copynumber: 3.4 Consensus size: 88
50869410 TTAAATAAAC
* *
50869420 CAATCCTATCTCCCTAAAGTTGTAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTAAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTT
*
50869485 GCAGTGGAGTAGACAGAAGAAAT
66 GCAGTAGAGTAGACAGAAGAAAT
*
50869508 CAATCCTATCTTCCTAAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTAAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTT
*
50869573 GCAGTAGAGTAGATC-----ACAT
66 GCAGTAGAGTAGA-CAGAAGAAAT
* * * * * * * *
50869592 CCAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACA-AAAGAAGCCACAAACCTTATCTCTCTG
1 -CAATCCTATCTCCCTAAAGTTGCAGTGGAG-TGA-ATTAA-AA-CCACAGATCTTATCTCTCTG
* *** *
50869656 AAGTTGCAGTAGAGCAGGTTGAAGTAA-
61 AAGTTGCAGTAGAGTAGACAGAAGAAAT
* *
50869683 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 CAA-TCCTATCTCCCTAAAGTTGCAGTGGAGT
50869715 AGACAGAAGT
Statistics
Matches: 173, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
84 3 0.02
85 25 0.14
86 4 0.02
87 3 0.02
88 108 0.62
89 1 0.01
90 2 0.01
91 26 0.15
92 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (88 bp):
CAATCCTATCTCCCTAAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGTAGACAGAAGAAAT
Found at i:50869706 original size:44 final size:45
Alignment explanation
Indices: 50869594--50869753 Score: 137
Period size: 44 Copynumber: 3.6 Consensus size: 45
50869584 GATCACATCC
* * * *
50869594 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAG-AAGCCACA
1 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGTAA--C-TA
** * ***
50869641 AACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGTAAC-A
1 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGTAACTA
* * **
50869685 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACAGAAGTTGCTA
1 AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGTAACTA
*
50869730 ATTC-TATCTCCCTGAAGTTGCAGT
1 AGTCTTATCTCCCTGAAGTTGCAGT
50869754 GCAGCGAATT
Statistics
Matches: 91, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
44 54 0.59
45 4 0.04
46 1 0.01
47 30 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGTAACTA
Found at i:50891111 original size:26 final size:26
Alignment explanation
Indices: 50891082--50891139 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
50891072 CCCTATATAT
50891082 GGCTCTTCATGAGCTTCCCGATTAAA
1 GGCTCTTCATGAGCTTCCCGATTAAA
** * *
50891108 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCATGAGCTTCCCGATTAAA
50891134 GGCTCT
1 GGCTCT
50891140 CTGGAGCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCCCGATTAAA
Found at i:50891151 original size:26 final size:26
Alignment explanation
Indices: 50891091--50891212 Score: 85
Period size: 26 Copynumber: 4.9 Consensus size: 26
50891081 TGGCTCTTCA
*
50891091 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTCTG
* *
50891117 TGAGCTTCCTGATTAATGGCTCTCTG
1 TGAGCTTCCCGATTAAAGGCTCTCTG
* * * *
50891143 -GAGCTTTCC-AATATA-GCTCGCT-
1 TGAGCTTCCCGATTAAAGGCTCTCTG
* * *
50891165 TGAACTTCCCGA-TAAATGGCTATCCG
1 TGAGCTTCCCGATTAAA-GGCTCTCTG
* *
50891191 -GAGCTTCTCGATTAATGGCTCT
1 TGAGCTTCCCGATTAAAGGCTCT
50891213 TCGGAGCTAC
Statistics
Matches: 71, Mismatches: 19, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
23 16 0.23
24 4 0.06
25 25 0.35
26 26 0.37
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTCTG
Found at i:50891207 original size:25 final size:25
Alignment explanation
Indices: 50891169--50891220 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
50891159 CTCGCTTGAA
50891169 CTTCCCGATAAATGGCTATCCGGAG
1 CTTCCCGATAAATGGCTATCCGGAG
* * * *
50891194 CTTCTCGATTAATGGCTCTTCGGAG
1 CTTCCCGATAAATGGCTATCCGGAG
50891219 CT
1 CT
50891221 ACCTGTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTCCCGATAAATGGCTATCCGGAG
Found at i:50891345 original size:25 final size:24
Alignment explanation
Indices: 50891266--50891328 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 24
50891256 GCTCTTGTGG
50891266 GCTTCTCGTTATACAGCCCAGATAA
1 GCTTCTCGTTATACAGCCCA-ATAA
* *
50891291 GTTTCCCGTTATACAGCCCGAATAA
1 GCTTCTCGTTATACAGCCC-AATAA
50891316 GCTTCTCGTTATA
1 GCTTCTCGTTATA
50891329 TAGCTCACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (24 bp):
GCTTCTCGTTATACAGCCCAATAA
Found at i:50899487 original size:26 final size:23
Alignment explanation
Indices: 50899437--50899495 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 23
50899427 ACAAAAATAT
50899437 TAAAAAAACTTAAAATAATATTACA
1 TAAAAAAA--TAAAATAATATTACA
*
50899462 TAATAAAATAAAATAATGTATATACA
1 TAAAAAAATAAAATAA--TAT-TACA
50899488 TAAAAAAA
1 TAAAAAAA
50899496 ATAGGTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 8 0.28
25 10 0.34
26 11 0.38
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAAAAATAAAATAATATTACA
Found at i:50899490 original size:23 final size:23
Alignment explanation
Indices: 50899447--50899498 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
50899437 TAAAAAAACT
*
50899447 TAAAATAATATTACATAATAAAA
1 TAAAATAATAGTACATAATAAAA
*
50899470 TAAAATAAT-GTATATACATAAAA
1 TAAAATAATAGTACATA-ATAAAA
50899493 -AAAATA
1 TAAAATA
50899499 GGTAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (23 bp):
TAAAATAATAGTACATAATAAAA
Found at i:50899554 original size:24 final size:24
Alignment explanation
Indices: 50899522--50899575 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
50899512 ATAAACTAGT
*
50899522 ATAATAACAAT-ATCAATAATATTA
1 ATAATAACAATGATC-ATAATAATA
50899546 ATAATAACAATGATCATAATAATA
1 ATAATAACAATGATCATAATAATA
*
50899570 GTAATA
1 ATAATA
50899576 GTAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAATAACAATGATCATAATAATA
Found at i:50900680 original size:50 final size:50
Alignment explanation
Indices: 50900599--50901201 Score: 341
Period size: 50 Copynumber: 12.2 Consensus size: 50
50900589 TGTGTCTGTA
* ** * *
50900599 GGGAACTAAGATTTGCTTTTGTAGCTTTAATCGGTTCGACTGCACCGCCA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * * *
50900649 TGGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCACCA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * ** * * **
50900699 TGGAAGTAAGATTC-TTTGTTGTAGCTTTAATCTATTCCAGTGCAACATCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * * ** * * **
50900749 GGGAAGTAGGATTCACTGTTGTAGCGTTAATATGTTTCATTGCAATGCCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
*
50900799 GGGAAGTAAGATTCA-TTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * * * * *
50900849 GGGAAATAATATTC-GTTGTTGTAGCTTTAATCTGTTTCACTGC-CATGCCG
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCGGTTCCACTGCAC-CGCCG
* * *** * * ***
50900899 GGGAAGTAAGATTCGCTATTGTAGCTTTAATATATTTCATTGCAATTCCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * ** * * ***
50900949 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATTTGTTTCACCGCAAAACCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * * * *
50900999 GGGAAGTAAGATTC-GTTGTT-TAG--TT--T--GTTCCATTGCACTGTCA
1 GGGAAGTAAGATTCACTT-TTGTAGCTTTAATCGGTTCCACTGCACCGCCG
** * * * * *
50901042 ACGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGC-CACGCTG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCAC-CGCCG
* * * ** **
50901092 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAATGCTA
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
* * * * * * ***
50901142 GGGAGGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCACTGTAATACCG
1 GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
50901192 GGGAAGTAAG
1 GGGAAGTAAG
50901202 GTTTGTGGCT
Statistics
Matches: 446, Mismatches: 89, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
43 23 0.05
44 4 0.01
45 1 0.00
46 2 0.00
47 2 0.00
48 1 0.00
49 9 0.02
50 402 0.90
51 2 0.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (50 bp):
GGGAAGTAAGATTCACTTTTGTAGCTTTAATCGGTTCCACTGCACCGCCG
Found at i:50900762 original size:100 final size:100
Alignment explanation
Indices: 50900650--50901201 Score: 452
Period size: 100 Copynumber: 5.6 Consensus size: 100
50900640 GCACCGCCAT
* * ** *
50900650 GGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCACCATGGAAGTAAGATTCTT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCACCGGGGAAGTAAGATTCAT
*
50900715 TGTTGTAGCTTTAATCTATTCCAGTGCAACATCGG
66 TGTTGTAGCTTTAATCTATTCCACTGCAACATCGG
* * * ***
50900750 GGAAGTAGGATTCACTGTTGTAGCGTTAAT-ATGTTTCATTGCAATGCCGGGGAAGTAAGATTCA
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCA-GTTTCACTGCACCACCGGGGAAGTAAGATTCA
* * **
50900814 TTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCGG
65 TTGTTGTAGCTTTAATCTATTCCACTGCAACATCGG
* * ** *
50900850 GGAAATAATATTCGTTGTTGTAGCTTTAATCTGTTTCACTG--CCATGCCGGGGAAGTAAGATTC
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCA--CCGGGGAAGTAAGATTC
** * * * * *
50900913 GCTATTGTAGCTTTAATATATTTCATTGCAA-TTCCGG
64 ATTGTTGTAGCTTTAATCTATTCCACTGCAACAT-CGG
* ** * ** *
50900950 GGAAGTAAGATTCGCTGTTGTAGCTTTAATTTGTTTCACCGCAAAACCGGGGAAGTAAGATTCGT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCACCGGGGAAGTAAGATTCAT
** * *
50901015 TGTT-TAG-TTTGTTCCATTGCACTGTC-A-A-C--
66 TGTTGTAGCTTTAATCTATTCCACTG-CAACATCGG
* *
50901044 -GAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTG--CCACGCTGGGGAAGTAAGATTC
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCAC-C-GGGGAAGTAAGATTC
** * *
50901106 GCTGTTGTAGCTTTAATCTGTTCCACTGC-A-ATGCTAG
64 ATTGTTGTAGCTTTAATCTATTCCACTGCAACAT-C-GG
* * * * **
50901143 GGAGGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCACTGTAATACCGGGGAAGTAAG
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCACCGGGGAAGTAAG
50901202 GTTTGTGGCT
Statistics
Matches: 364, Mismatches: 68, Indels: 40
0.77 0.14 0.08
Matches are distributed among these distances:
91 2 0.01
92 1 0.00
93 58 0.16
94 6 0.02
95 12 0.03
96 2 0.01
98 12 0.03
99 5 0.01
100 262 0.72
101 1 0.00
102 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (100 bp):
GGAAGTAAGATTCACTGTTGTAGCTTTAATCAGTTTCACTGCACCACCGGGGAAGTAAGATTCAT
TGTTGTAGCTTTAATCTATTCCACTGCAACATCGG
Found at i:50900870 original size:150 final size:149
Alignment explanation
Indices: 50900650--50901135 Score: 574
Period size: 150 Copynumber: 3.3 Consensus size: 149
50900640 GCACCGCCAT
* * ** *
50900650 GGAAGTAAGATTCACTTTTGTAGCTTTAATCAGTTCCACTGCACCACCATGGAAGTAAGATTCTT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
* * * *
50900715 TGTTGTAGCTTTAATCTATTCCAGTGCAACATCGGGGAAGTAGGATTCACTGTTGTAGCGTTAAT
66 TGTTGTAGCTTTAATCTATTCCACTGC-ACATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
50900780 ATGTTTCATTGCAATGCCGG
130 ATGTTTCATTGCAATGCCGG
* * * *
50900800 GGAAGTAAGATTCATTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCGGGGAAATAATATTCGT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
* * *
50900865 TGTTGTAGCTTTAATCTGTTTCACTGC-CATGCCGGGGAAGTAAGATTCGCTATTGTAGCTTTAA
66 TGTTGTAGCTTTAATCTATTCCACTGCACAT--CGGGGAAGTAAGATTCGCTGTTGTAGCTTTAA
* *
50900929 TATATTTCATTGCAATTCCGG
129 TATGTTTCATTGCAATGCCGG
* * * * **
50900950 GGAAGTAAGATTCGCTGTTGTAGCTTTAATTTGTTTCACCGCAAAACCGGGGAAGTAAGATTCGT
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
** * *
50901015 TGTT-TAG-TTTGTTCCATTGCACTGTCA-A-C---GAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTATTCCACTG-CACATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
* * * * *
50901073 CTGTTTCACTGCCACGCTGG
130 ATGTTTCATTGCAATGCCGG
*
50901093 GGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCA
1 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCA
50901136 ATGCTAGGGA
Statistics
Matches: 288, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
143 81 0.28
146 1 0.00
148 15 0.05
149 5 0.02
150 186 0.65
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (149 bp):
GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCACCACCGGGGAAGTAAGATTCGT
TGTTGTAGCTTTAATCTATTCCACTGCACATCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAATA
TGTTTCATTGCAATGCCGG
Found at i:50902570 original size:13 final size:12
Alignment explanation
Indices: 50902538--50902577 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
50902528 GGCCTCTCCA
*
50902538 TTTTTTTCTTTT
1 TTTTTTTATTTT
*
50902550 TTTCTTTATTTT
1 TTTTTTTATTTT
50902562 TTCTTTTTATTTT
1 TT-TTTTTATTTT
50902575 TTT
1 TTT
50902578 AGACTCAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.05, C:0.07, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTTATTTT
Found at i:50911316 original size:20 final size:19
Alignment explanation
Indices: 50911271--50911320 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
50911261 TGGATTGTTA
50911271 TTTTATTTTATTTTATTTGGT
1 TTTTA-TTTATTTTATTT-GT
50911292 TTTTATTTATTATTATTT-T
1 TTTTATTTATT-TTATTTGT
50911311 TGTTTATTTA
1 T-TTTATTTA
50911321 ATCTGCATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.07
20 14 0.52
21 11 0.41
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTATTTATTTTATTTGT
Found at i:50911810 original size:38 final size:38
Alignment explanation
Indices: 50911750--50911906 Score: 199
Period size: 38 Copynumber: 4.2 Consensus size: 38
50911740 AGTCCCGTTA
50911750 AACACCGGCACGAA-GCCTGCTAGGCACATAGCCCGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* * * * *
50911787 AACACCAGCATGAAGGCTTGCTAGGCACATATCCCAAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* * * *
50911825 AAAATCGGCACGAAGGCTTGCTAGGCACATAGCCTGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
* * *
50911863 AACACCGGCACAAAGGCCTACTAGGCATATAGCCCGAT
1 AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
50911901 AACACC
1 AACACC
50911907 TTATAGACAA
Statistics
Matches: 100, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
37 12 0.12
38 88 0.88
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.15
Consensus pattern (38 bp):
AACACCGGCACGAAGGCCTGCTAGGCACATAGCCCGAT
Found at i:50917795 original size:15 final size:15
Alignment explanation
Indices: 50917775--50917818 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
50917765 ATGCCTCACA
50917775 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
50917790 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
50917805 CACCGTGTTATCAA
1 CACCGTGTTATCAA
50917819 GAAACAATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:50918918 original size:13 final size:13
Alignment explanation
Indices: 50918900--50918926 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50918890 AAACAACCAT
50918900 AAATAATCAATTA
1 AAATAATCAATTA
50918913 AAATAATCAATTA
1 AAATAATCAATTA
50918926 A
1 A
50918927 GCTACTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAATCAATTA
Found at i:50924709 original size:17 final size:17
Alignment explanation
Indices: 50924679--50924712 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50924669 TAAGAGGAAT
* *
50924679 AAAAATAAATAAATAAC
1 AAAAAGAAAAAAATAAC
50924696 AAAAAGAAAAAAATAAC
1 AAAAAGAAAAAAATAAC
50924713 GATAAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAAGAAAAAAATAAC
Found at i:50925965 original size:19 final size:19
Alignment explanation
Indices: 50925937--50925982 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
50925927 GTATGGGTTT
* *
50925937 ATACAATTCGTGTGCCAAG
1 ATACACTTCGTATGCCAAG
*
50925956 ATACACTTCGTATGCCAAT
1 ATACACTTCGTATGCCAAG
50925975 ATACACTT
1 ATACACTT
50925983 TATGTGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (19 bp):
ATACACTTCGTATGCCAAG
Found at i:50925990 original size:19 final size:19
Alignment explanation
Indices: 50925937--50925991 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
50925927 GTATGGGTTT
* *
50925937 ATACAATTCGTGTGCCAAG
1 ATACACTTCATGTGCCAAG
* * *
50925956 ATACACTTCGTATGCCAAT
1 ATACACTTCATGTGCCAAG
*
50925975 ATACACTTTATGTGCCA
1 ATACACTTCATGTGCCA
50925992 GTTTATTTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (19 bp):
ATACACTTCATGTGCCAAG
Found at i:50926242 original size:36 final size:36
Alignment explanation
Indices: 50926195--50926267 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
50926185 AAACGGTTGG
50926195 ATCTCTCCAACCCTTTATACAAAACAATCTCAACTT
1 ATCTCTCCAACCCTTTATACAAAACAATCTCAACTT
50926231 ATCTCTCCAACCCTTTATACAAAACAATCTCAACTT
1 ATCTCTCCAACCCTTTATACAAAACAATCTCAACTT
50926267 A
1 A
50926268 GGCTTTTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (36 bp):
ATCTCTCCAACCCTTTATACAAAACAATCTCAACTT
Found at i:50932419 original size:42 final size:41
Alignment explanation
Indices: 50932302--50932419 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
50932292 AAAAAGCTCG
* *
50932302 TACGATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAA
1 TACGATGCCAATGTCCCAGACATGGTCTTACA-CAAATCAAA
** * * * * * *
50932344 TAAC-AGTGTTACTATCCTAAACAAGGTCTTACACATAATCATA
1 T-ACGA-TGCCAATGTCCCAGACATGGTCTTACACA-AATCAAA
50932387 TACGATGCCAATGTCCCAGACATGGTCTTACAC
1 TACGATGCCAATGTCCCAGACATGGTCTTACAC
50932420 GTAAATCACA
Statistics
Matches: 55, Mismatches: 17, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
42 26 0.47
43 29 0.53
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (41 bp):
TACGATGCCAATGTCCCAGACATGGTCTTACACAAATCAAA
Found at i:50932601 original size:23 final size:22
Alignment explanation
Indices: 50932574--50932626 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
50932564 TATATACATT
50932574 AAAATTTA-ATTCGAAATTTATAA
1 AAAATTTACATTC-AAATTTA-AA
*
50932597 AAAATATACATTCAAATTTAAA
1 AAAATTTACATTCAAATTTAAA
*
50932619 AACATTTA
1 AAAATTTA
50932627 TTTACTTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 8 0.31
23 14 0.54
24 4 0.15
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATTTACATTCAAATTTAAA
Found at i:50939872 original size:21 final size:21
Alignment explanation
Indices: 50939814--50939874 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
50939804 TCTTAAAAAG
*
50939814 TTATTTTTATACAATAATAATATT
1 TTATTTTT-TAAAAT-AT-ATATT
* *
50939838 TTA-ATTTTAGAATATATATT
1 TTATTTTTTAAAATATATATT
50939858 TTATTTTTTAAAATATA
1 TTATTTTTTAAAATATA
50939875 ATTCTATCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 8 0.25
21 13 0.41
22 5 0.16
23 3 0.09
24 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTATTTTTTAAAATATATATT
Found at i:50939887 original size:21 final size:21
Alignment explanation
Indices: 50939829--50939888 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
50939819 TTTATACAAT
* *
50939829 AATA-ATATTTTA-ATTTTAG
1 AATATATATTCTATATTTTAA
* *
50939848 AATATATATTTTATTTTTTAA
1 AATATATATTCTATATTTTAA
50939869 AATATA-ATTCTATCATTTTA
1 AATATATATTCTAT-ATTTTA
50939889 TTGATTTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.12
20 14 0.41
21 16 0.47
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (21 bp):
AATATATATTCTATATTTTAA
Found at i:50940020 original size:45 final size:45
Alignment explanation
Indices: 50939960--50940045 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
50939950 CACTGTCTAA
* *
50939960 TTAACTAAATTACATATTATATACTATAAATTATTTATACTAAAT
1 TTAACTAAATCACATAGTATATACTATAAATTATTTATACTAAAT
* * * * *
50940005 TTAAGTAAATCACATAGTATTTATTGTTAATTATTTATACT
1 TTAACTAAATCACATAGTATATACTATAAATTATTTATACT
50940046 CGGTGGAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (45 bp):
TTAACTAAATCACATAGTATATACTATAAATTATTTATACTAAAT
Found at i:50945230 original size:13 final size:13
Alignment explanation
Indices: 50945214--50945238 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50945204 ATGGGTCATA
50945214 TGCCCGTGTGTGT
1 TGCCCGTGTGTGT
50945227 TGCCCGTGTGTG
1 TGCCCGTGTGTG
50945239 ACACAAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.40, T:0.36
Consensus pattern (13 bp):
TGCCCGTGTGTGT
Found at i:50965522 original size:51 final size:51
Alignment explanation
Indices: 50965446--50965558 Score: 226
Period size: 51 Copynumber: 2.2 Consensus size: 51
50965436 TTCATTTATT
50965446 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
1 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
50965497 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
1 CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
50965548 CAATTTAGTCC
1 CAATTTAGTCC
50965559 TTATCATGAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (51 bp):
CAATTTAGTCCCTAATGTTACAAAGTTAACTAACAAGCTTAACTAACTTTA
Found at i:50967648 original size:21 final size:21
Alignment explanation
Indices: 50967624--50967754 Score: 86
Period size: 21 Copynumber: 6.2 Consensus size: 21
50967614 CACGAGCTAC
*
50967624 TCACAAGGCCGTGTAACTCTA
1 TCACAAGGCCGTGTGACTCTA
*
50967645 TCACACAGG-CGTGTGTCTCTA
1 TCACA-AGGCCGTGTGACTCTA
* * * *
50967666 CCACACGGCCGTGTGCCTCTT
1 TCACAAGGCCGTGTGACTCTA
* *** *
50967687 TCACACGGGTATGTCACTCTA
1 TCACAAGGCCGTGTGACTCTA
*
50967708 TCACACAGG-CGTGTGTCTCTA
1 TCACA-AGGCCGTGTGACTCTA
* * * *
50967729 CCACACGGCCGTGTGCCTCTT
1 TCACAAGGCCGTGTGACTCTA
50967750 TCACA
1 TCACA
50967755 CGGGTATGTC
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
20 4 0.05
21 74 0.89
22 5 0.06
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (21 bp):
TCACAAGGCCGTGTGACTCTA
Found at i:50967723 original size:63 final size:63
Alignment explanation
Indices: 50967639--50967776 Score: 267
Period size: 63 Copynumber: 2.2 Consensus size: 63
50967629 AGGCCGTGTA
50967639 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
1 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
50967702 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
1 ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
*
50967765 ACTCTTTCACAC
1 ACTCTATCACAC
50967777 GACCGTGTAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.18, C:0.34, G:0.20, T:0.28
Consensus pattern (63 bp):
ACTCTATCACACAGGCGTGTGTCTCTACCACACGGCCGTGTGCCTCTTTCACACGGGTATGTC
Found at i:50967755 original size:21 final size:20
Alignment explanation
Indices: 50967640--50967757 Score: 112
Period size: 21 Copynumber: 5.7 Consensus size: 20
50967630 GGCCGTGTAA
*
50967640 CTCTATCACACAGGCGTGTGT
1 CTCTATCACAC-GGCGTGTGC
*
50967661 CTCTACCACACGGCCGTGTGC
1 CTCTATCACACGG-CGTGTGC
* *
50967682 CTCTTTCACACGG-GTATGTC
1 CTCTATCACACGGCGTGTG-C
*
50967702 ACTCTATCACACAGGCGTGTGT
1 -CTCTATCACAC-GGCGTGTGC
*
50967724 CTCTACCACACGGCCGTGTGC
1 CTCTATCACACGG-CGTGTGC
*
50967745 CTCTTTCACACGG
1 CTCTATCACACGG
50967758 GTATGTCACT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
19 4 0.05
20 5 0.06
21 64 0.81
22 2 0.03
23 4 0.05
ACGTcount: A:0.17, C:0.35, G:0.22, T:0.26
Consensus pattern (20 bp):
CTCTATCACACGGCGTGTGC
Found at i:50967769 original size:21 final size:21
Alignment explanation
Indices: 50967640--50967777 Score: 90
Period size: 21 Copynumber: 6.6 Consensus size: 21
50967630 GGCCGTGTAA
* *
50967640 CTCTATCACACAGGCGTGTGT-
1 CTCTTTCACAC-GGCGTATGTC
** *
50967661 CTCTACCACACGGCCGTGTG-C
1 CTCTTTCACACGG-CGTATGTC
50967682 CTCTTTCACACGG-GTATGTC
1 CTCTTTCACACGGCGTATGTC
* *
50967702 ACTCTATCACACAGGCGTGTGT-
1 -CTCTTTCACAC-GGCGTATGTC
** *
50967724 CTCTACCACACGGCCGTGTG-C
1 CTCTTTCACACGG-CGTATGTC
50967745 CTCTTTCACACGG-GTATGTC
1 CTCTTTCACACGGCGTATGTC
50967765 ACTCTTTCACACG
1 -CTCTTTCACACG
50967778 ACCGTGTAAA
Statistics
Matches: 97, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
19 8 0.08
20 6 0.06
21 76 0.78
22 2 0.02
23 5 0.05
ACGTcount: A:0.17, C:0.34, G:0.21, T:0.28
Consensus pattern (21 bp):
CTCTTTCACACGGCGTATGTC
Found at i:50968650 original size:24 final size:24
Alignment explanation
Indices: 50968622--50968669 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
50968612 GTACAGAGTG
*
50968622 TATAGGGACTTAAATCATATTTTA
1 TATAGGGACTTAAAGCATATTTTA
*
50968646 TATAGGGACTTAGAGCATATTTTA
1 TATAGGGACTTAAAGCATATTTTA
50968670 ACTTTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (24 bp):
TATAGGGACTTAAAGCATATTTTA
Found at i:50970095 original size:21 final size:21
Alignment explanation
Indices: 50970066--50970113 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
50970056 CTGGTTTAAT
* *
50970066 TAAATAAATTATTAAAAATAA
1 TAAAAAAATTAATAAAAATAA
* *
50970087 TAAAAAAATTAATAAAAGTAT
1 TAAAAAAATTAATAAAAATAA
50970108 TAAAAA
1 TAAAAA
50970114 TAGGGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (21 bp):
TAAAAAAATTAATAAAAATAA
Done.