Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 158 of 222
Found at i:50972943 original size:48 final size:48
Alignment explanation
Indices: 50972869--50972961 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 48
50972859 TGCTATGCAA
* * *
50972869 TGCTAAACTTGGTTTTCCACTTTCTACACTTTTATC-CATATTTATCTT
1 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCAC-TATTTATCTT
50972917 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTAT
50972962 TCCCTCTTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.08, T:0.46
Consensus pattern (48 bp):
TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATCTT
Found at i:50973295 original size:54 final size:54
Alignment explanation
Indices: 50973208--50973339 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
50973198 AAATTGGGAT
* * * * * * *
50973208 ACACGGTCATGTCCCAGCCCGTGTCCTTGCCCGTGTAACTCACTGACTTGAGAC
1 ACACGGTCGTGTCTCAGCCCATGTCCTTACCCGTGCAACTCACTAACTAGAGAC
* * *
50973262 ATACGGTCGTGTCTCAGCCCATGT-CTCTACCCGTGCAACTCACTAACTAGGGTC
1 ACACGGTCGTGTCTCAGCCCATGTCCT-TACCCGTGCAACTCACTAACTAGAGAC
* *
50973316 ACATGGTCGTGTCTCAGGCCATGT
1 ACACGGTCGTGTCTCAGCCCATGT
50973340 GTCAGCCCGT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.03
54 62 0.97
ACGTcount: A:0.19, C:0.33, G:0.23, T:0.26
Consensus pattern (54 bp):
ACACGGTCGTGTCTCAGCCCATGTCCTTACCCGTGCAACTCACTAACTAGAGAC
Found at i:50974300 original size:18 final size:19
Alignment explanation
Indices: 50974258--50974305 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
50974248 GATTCATATC
* *
50974258 TCATTTCATCATTTCATATT
1 TCATTTC-TCATCTCATAGT
50974278 TCATTTCTCATCTCAT-GT
1 TCATTTCTCATCTCATAGT
50974296 TCATTTCTCA
1 TCATTTCTCA
50974306 ACTTTTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 8 0.31
20 7 0.27
ACGTcount: A:0.21, C:0.25, G:0.02, T:0.52
Consensus pattern (19 bp):
TCATTTCTCATCTCATAGT
Found at i:50975155 original size:40 final size:40
Alignment explanation
Indices: 50975100--50975191 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
50975090 TTAAATTTTA
* *
50975100 ACAATTTAGTCCATATTGCTCAAAATTAACAATTAATTCC
1 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
50975140 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
1 ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
50975180 ACAATTTAGTCC
1 ACAATTTAGTCC
50975192 TTTTCTACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (40 bp):
ACAATTTAGTCCATATTACTCAAAATCAACAATTAATTCC
Found at i:50975551 original size:26 final size:26
Alignment explanation
Indices: 50975495--50975551 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
50975485 TGTTATTACG
**
50975495 ACATATATAATATATATAATAAGTTA
1 ACATATATAATATATATAATAACATA
*
50975521 ACATATATAA-ATATATTATAGACATA
1 ACATATATAATATATATAATA-ACATA
*
50975547 TCATA
1 ACATA
50975552 AATGTTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.37
Consensus pattern (26 bp):
ACATATATAATATATATAATAACATA
Found at i:50975941 original size:17 final size:17
Alignment explanation
Indices: 50975919--50975951 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50975909 TTTAAATAAA
*
50975919 TAAATATTTTTCTCAAT
1 TAAATAATTTTCTCAAT
50975936 TAAATAATTTTCTCAA
1 TAAATAATTTTCTCAA
50975952 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATAATTTTCTCAAT
Found at i:50986018 original size:45 final size:45
Alignment explanation
Indices: 50985905--50986018 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
50985895 TAAAACTATA
* *
50985905 GTTGAAAAACGCTATGGCATCATAATAAAAATGAGTAAGACCATG
1 GTTGAAAGACGCTATGGCATCATGATAAAAATGAGTAAGACCATG
* * ** * *
50985950 GCTGAAAGATGCTATGGTGTCATGATATAAATGAGTAAGACCCTG
1 GTTGAAAGACGCTATGGCATCATGATAAAAATGAGTAAGACCATG
*
50985995 GTTGAAAGACAGC-ATGACATCATG
1 GTTGAAAGAC-GCTATGGCATCATG
50986019 GAAAGAAGAC
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
45 53 0.96
46 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (45 bp):
GTTGAAAGACGCTATGGCATCATGATAAAAATGAGTAAGACCATG
Found at i:50992158 original size:19 final size:19
Alignment explanation
Indices: 50992134--50992269 Score: 146
Period size: 19 Copynumber: 6.8 Consensus size: 19
50992124 AATTTTTGAG
50992134 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
50992153 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
**
50992172 GATATATGCTCTCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
50992193 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
50992212 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
50992231 GATATGCAATCTTAGAATATAT
1 GATATGCAATCTTAG---ATAT
*
50992253 GATTTTGCAATCTTAGA
1 GA-TATGCAATCTTAGA
50992270 GATTTAATTT
Statistics
Matches: 98, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
19 64 0.65
20 1 0.01
21 15 0.15
22 6 0.06
23 12 0.12
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:50992179 original size:40 final size:40
Alignment explanation
Indices: 50992135--50992241 Score: 155
Period size: 40 Copynumber: 2.7 Consensus size: 40
50992125 ATTTTTGAGG
50992135 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
** * **
50992175 ATATGCTCTCTTAGATATGATATACAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
50992215 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
50992242 TTAGAATATA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
38 20 0.34
40 39 0.66
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:50992889 original size:15 final size:15
Alignment explanation
Indices: 50992869--50992904 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50992859 TGAACATACT
* *
50992869 TATTTTTTCAGCTAA
1 TATTTTTTAAACTAA
50992884 TATTTTTTAAACTAA
1 TATTTTTTAAACTAA
50992899 TATTTT
1 TATTTT
50992905 CCTATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (15 bp):
TATTTTTTAAACTAA
Found at i:50992924 original size:24 final size:24
Alignment explanation
Indices: 50992883--50992929 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
50992873 TTTTCAGCTA
50992883 ATATTTTTTAAACTAATATTTTCCT
1 ATATTTTTTAAAC-AATATTTTCCT
50992908 ATATTTTTTAATA-AATATTTTC
1 ATATTTTTTAA-ACAATATTTTC
50992930 ATATTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 11 0.52
26 1 0.05
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (24 bp):
ATATTTTTTAAACAATATTTTCCT
Found at i:50993718 original size:98 final size:98
Alignment explanation
Indices: 50993600--50993796 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
50993590 TAAAAAATAA
* * *
50993600 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
50993665 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
50993698 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
50993763 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
50993796 T
1 T
50993797 TTTATTGTAC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:50994537 original size:16 final size:18
Alignment explanation
Indices: 50994513--50994553 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
50994503 AACAGCATAA
*
50994513 AAATTAAAT-AAATT-GG
1 AAATAAAATAAAATTGGG
50994529 AAATAAAATAAAATTGGG
1 AAATAAAATAAAATTGGG
50994547 AAATAAA
1 AAATAAA
50994554 TTTGTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 5 0.23
18 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (18 bp):
AAATAAAATAAAATTGGG
Found at i:50999404 original size:28 final size:27
Alignment explanation
Indices: 50999340--50999491 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
50999330 TTATTAAGTC
* * *
50999340 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50999367 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
50999395 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
50999422 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
50999450 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50999477 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50999492 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50999424 original size:55 final size:55
Alignment explanation
Indices: 50999340--50999516 Score: 255
Period size: 55 Copynumber: 3.2 Consensus size: 55
50999330 TTATTAAGTC
* * * *
50999340 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
50999395 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
50999450 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
50999506 CGCACACTTAG
1 CGCACACTTAG
50999517 CGCCAATCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 94 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:51008245 original size:17 final size:18
Alignment explanation
Indices: 51008223--51008258 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
51008213 AAAAATTAAA
51008223 TAAATTG-GAAATAAATT
1 TAAATTGCGAAATAAATT
51008240 TAAATTGCGAAATAAATT
1 TAAATTGCGAAATAAATT
51008258 T
1 T
51008259 GTATTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (18 bp):
TAAATTGCGAAATAAATT
Found at i:51010110 original size:40 final size:38
Alignment explanation
Indices: 51010048--51010138 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 38
51010038 ATCGTCAGAT
51010048 CAACCGAACACACCAGAAAGAAGCTCACAAGAGCTAATC
1 CAACCGAA-ACACCAGAAAGAAGCTCACAAGAGCTAATC
* *
51010087 CAACCGAAACACGCTAGACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACAC-C-AGAAAGAAGCTCACAAGAGCTAATC
* *
51010127 TAATCGAAACAC
1 CAACCGAAACAC
51010139 ACCAGATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
38 4 0.09
39 9 0.20
40 33 0.72
ACGTcount: A:0.45, C:0.29, G:0.15, T:0.11
Consensus pattern (38 bp):
CAACCGAAACACCAGAAAGAAGCTCACAAGAGCTAATC
Found at i:51014016 original size:22 final size:22
Alignment explanation
Indices: 51013974--51014040 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 22
51013964 AATCGAAATG
51013974 AATA-AAAATTTTA-AAACATA
1 AATATAAAATTTTATAAACATA
*
51013994 AA-ATAAAATTTTATAAATTATA
1 AATATAAAATTTTATAAA-CATA
51014016 AATTATAATACATTTTATAAACATA
1 AA-TATAA-A-ATTTTATAAACATA
51014041 TACATATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 1 0.03
20 11 0.29
21 3 0.08
22 5 0.13
24 4 0.11
25 4 0.11
26 10 0.26
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
AATATAAAATTTTATAAACATA
Found at i:51015606 original size:4 final size:4
Alignment explanation
Indices: 51015597--51015623 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
51015587 TGAATTTGGT
51015597 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
51015624 GGGTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:51018769 original size:76 final size:77
Alignment explanation
Indices: 51018677--51018881 Score: 267
Period size: 76 Copynumber: 2.7 Consensus size: 77
51018667 TTTTTCTTGG
* * *
51018677 TTTAGGAATTACTTAATTCCTTAAA-ACTCTTTAAGGTTTTAAGTAACCTTTAATAAATTAAGTA
1 TTTAAGAATTACTTAATTTCTTAAACACTATTTAAGGTTTTAAGTAACCTTTAATAAATTAAGTA
51018741 -TTTTTCCCATGA
66 TTTTTTCCC-TGA
* *
51018753 TTTAAGAATTACTTAATTTCTTAAACAC-ATTTAAGGTTTTAAGTAACCCTTCATAAATTAAGTA
1 TTTAAGAATTACTTAATTTCTTAAACACTATTTAAGGTTTTAAGTAACCTTTAATAAATTAAGTA
*
51018817 TTTTTTTCCTGA
66 TTTTTTCCCTGA
* * *
51018829 TTT-AGAAATTACTTAATTTCTTAAAGA-TATTTTAAGGTTTAAAGCAACCTTTA
1 TTTAAG-AATTACTTAATTTCTTAAACACTA-TTTAAGGTTTTAAGTAACCTTTA
51018882 TGTAATTTTC
Statistics
Matches: 113, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
75 2 0.02
76 83 0.73
77 28 0.25
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (77 bp):
TTTAAGAATTACTTAATTTCTTAAACACTATTTAAGGTTTTAAGTAACCTTTAATAAATTAAGTA
TTTTTTCCCTGA
Found at i:51019433 original size:77 final size:75
Alignment explanation
Indices: 51019284--51019560 Score: 222
Period size: 77 Copynumber: 3.6 Consensus size: 75
51019274 AGGTGATGTT
* * * * * *
51019284 ATTAAGTAACTTTCTCATGGTTTAGGAATTATTTAATTACTTAAAAATCAGTTAATGTTTTAGGT
1 ATTAAGTAACTTTC-CATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAA-GTTTTAAGT
*
51019349 -GGTGTTAAAGAA
64 AAG-GTTAAAGAA
** * *
51019361 ATTAAGTAGTTTTCTCATGATTTAAAAATTACTTAATTTCTTAAACATCAGATAAGATTTTAAGT
1 ATTAAGTAACTTTC-CATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAAG-TTTTAAGT
51019426 AAGGTTAAAG-A
64 AAGGTTAAAGAA
* * * * * *
51019437 GTTAAGTAACTATCCAAT-ATTGTATGAGATT-CTTAATTTCTTAAAGACCA-ATTACGGTTTTA
1 ATTAAGTAACTTTCC-ATGATT-TA-GAAATTACTTAATTTCTTAAAAATCAGA-TA-AGTTTTA
**
51019499 AGTAACATTAAAGAA
61 AGTAAGGTTAAAGAA
* * *
51019514 TTTAAGTAATTTTCCATTGATTTAGGAATTACTTAATTTCTTAAAAA
1 ATTAAGTAACTTTCCA-TGATTTAGAAATTACTTAATTTCTTAAAAA
51019561 AAATTGTAAC
Statistics
Matches: 161, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
75 5 0.03
76 56 0.35
77 96 0.60
78 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (75 bp):
ATTAAGTAACTTTCCATGATTTAGAAATTACTTAATTTCTTAAAAATCAGATAAGTTTTAAGTAA
GGTTAAAGAA
Found at i:51019498 original size:76 final size:77
Alignment explanation
Indices: 51019377--51019558 Score: 192
Period size: 76 Copynumber: 2.4 Consensus size: 77
51019367 TAGTTTTCTC
** * **
51019377 ATGATTTAAAAATTACTTAATTTCTTAAACATCAGATAAGATTTTAAGTAAGGTTAAAG-AGTTA
1 ATGATTTAGGAATTACTTAATTTCTTAAACACCAGATAAGATTTTAAGTAACATTAAAGAAGTTA
51019441 AGTAACTATCCA
66 AGTAACTATCCA
* * * * *
51019453 AT-ATTGTATGAGATT-CTTAATTTCTTAAAGACCA-ATTACGGTTTTAAGTAACATTAAAGAAT
1 ATGATT-TAGGA-ATTACTTAATTTCTTAAACACCAGA-TAAGATTTTAAGTAACATTAAAGAAG
* *
51019515 TTAAGTAATTTTCCA
63 TTAAGTAACTATCCA
*
51019530 TTGATTTAGGAATTACTTAATTTCTTAAA
1 ATGATTTAGGAATTACTTAATTTCTTAAA
51019559 AAAAATTGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
75 4 0.05
76 44 0.51
77 36 0.41
78 3 0.03
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (77 bp):
ATGATTTAGGAATTACTTAATTTCTTAAACACCAGATAAGATTTTAAGTAACATTAAAGAAGTTA
AGTAACTATCCA
Found at i:51021637 original size:22 final size:24
Alignment explanation
Indices: 51021610--51021654 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
51021600 TGGTGTCATA
51021610 TTTT-TACAATATTAGAGATAATT
1 TTTTATACAATATTAGAGATAATT
*
51021633 TTTTATACAATATTAGGGATAA
1 TTTTATACAATATTAGAGATAA
51021655 GAGATATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (24 bp):
TTTTATACAATATTAGAGATAATT
Found at i:51027793 original size:21 final size:21
Alignment explanation
Indices: 51027769--51027811 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51027759 ATAATAAGTA
51027769 TATTAATATAAAAT-TATAAAC
1 TATTAA-ATAAAATATATAAAC
*
51027790 TATTAAATATAATATATAAAC
1 TATTAAATAAAATATATAAAC
51027811 T
1 T
51027812 TATACATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTAAATAAAATATATAAAC
Found at i:51028134 original size:21 final size:21
Alignment explanation
Indices: 51028092--51028139 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
51028082 TTTAAAATCC
51028092 AAATTTCAAAAATATAATATA
1 AAATTTCAAAAATATAATATA
*
51028113 AAATTATCATAAATATAA-ATA
1 AAATT-TCAAAAATATAATATA
*
51028134 ATATTT
1 AAATTT
51028140 ATCGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 12 0.50
22 11 0.46
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATTTCAAAAATATAATATA
Found at i:51028149 original size:21 final size:22
Alignment explanation
Indices: 51028092--51028134 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
51028082 TTTAAAATCC
*
51028092 AAATT-TCAAAAATATAATATA
1 AAATTATCATAAATATAATATA
51028113 AAATTATCATAAATATAA-ATA
1 AAATTATCATAAATATAATATA
51028134 A
1 A
51028135 TATTTATCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATTATCATAAATATAATATA
Found at i:51031275 original size:126 final size:126
Alignment explanation
Indices: 51030923--51031276 Score: 588
Period size: 125 Copynumber: 2.8 Consensus size: 126
51030913 ATTATTTCGA
51030923 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
1 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
* * * *
51030987 TGAAATCACGCCCTCGTGGATGCGATTTTGCTACAGTATGTCATGTAAGAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
* * * *
51031049 -TCTGATGTTTCTGAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAG-AGAAATTG
1 GT-TGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
51031112 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
*
51031174 GTTGACGTTTCTGAGAAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
51031239 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
51031277 CAAGTTTGGG
Statistics
Matches: 211, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
125 115 0.55
126 95 0.45
127 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (126 bp):
GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAACAAATAATTTTTTT
Found at i:51034476 original size:7 final size:7
Alignment explanation
Indices: 51034466--51034490 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51034456 TTATATACAT
51034466 AATACTA
1 AATACTA
51034473 AATACTA
1 AATACTA
51034480 AATACTA
1 AATACTA
51034487 AATA
1 AATA
51034491 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:51035474 original size:15 final size:16
Alignment explanation
Indices: 51035449--51035479 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
51035439 ATAATTATCT
51035449 AAAAATACTTAAATAA
1 AAAAATACTTAAATAA
51035465 AAAAAT-CTTAAATAA
1 AAAAATACTTAAATAA
51035480 TAATTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATACTTAAATAA
Found at i:51035591 original size:10 final size:10
Alignment explanation
Indices: 51035572--51035628 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
51035562 GCCATTGATG
*
51035572 AAAATATAAA
1 AAAATTTAAA
51035582 AAAATTTAAA
1 AAAATTTAAA
**
51035592 ATTATTTAAA
1 AAAATTTAAA
*
51035602 AAAATATAAA
1 AAAATTTAAA
*
51035612 AAATTATTTTAA
1 AAA--ATTTAAA
51035624 AAAAT
1 AAAAT
51035629 AAATTTGAGA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
10 29 0.78
12 8 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:51035709 original size:22 final size:22
Alignment explanation
Indices: 51035684--51035734 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
51035674 AAATATGGGT
51035684 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
51035706 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
51035728 TTGAGAG
1 TTGAGAG
51035735 GAAAAATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:51043879 original size:29 final size:29
Alignment explanation
Indices: 51043813--51043880 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
51043803 GAGAAGTAAT
* * *
51043813 TTTATATTAATTAATTACGAAAAAATATG
1 TTTACATTAATTAATTACGAAAAAAAAAG
* *
51043842 TTTATATTAATTATATTATGAAAAAAAAAG
1 TTTACATTAATTA-ATTACGAAAAAAAAAG
51043872 -TTACATTAA
1 TTTACATTAA
51043881 GGACGTAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (29 bp):
TTTACATTAATTAATTACGAAAAAAAAAG
Found at i:51044353 original size:19 final size:21
Alignment explanation
Indices: 51044311--51044354 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
51044301 AATTAATTTT
*
51044311 TATAGTATTTTAATTTTAGGA
1 TATAGTATTTTAATTTTAGAA
*
51044332 TATA-TATTTTATTTTTA-AA
1 TATAGTATTTTAATTTTAGAA
51044351 TATA
1 TATA
51044355 ATTATATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TATAGTATTTTAATTTTAGAA
Found at i:51044496 original size:24 final size:23
Alignment explanation
Indices: 51044451--51044521 Score: 97
Period size: 23 Copynumber: 3.0 Consensus size: 23
51044441 AATTACATAG
51044451 TATTTATTATAAATTATTTATAC
1 TATTTATTATAAATTATTTATAC
* * *
51044474 TATTTTTTATGAAATTATATATAT
1 TATTTATTAT-AAATTATTTATAC
*
51044498 TATTTATTATTAATTATTTATAC
1 TATTTATTATAAATTATTTATAC
51044521 T
1 T
51044522 TGATTAAGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 20 0.50
24 20 0.50
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (23 bp):
TATTTATTATAAATTATTTATAC
Found at i:51048313 original size:41 final size:40
Alignment explanation
Indices: 51048261--51048347 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
51048251 AAACAGGCTT
*
51048261 TTAGCGGCGCTTGGACAAAAAACACCACTAAAAATCAAGCA
1 TTAGCGACGCTTGGAC-AAAAACACCACTAAAAATCAAGCA
** * * * *
51048302 TTAGCGACGCTTTTACAAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGACGCTTGGACAAAAACACCACTAAAAATCAAGCA
51048342 TTAGCG
1 TTAGCG
51048348 GCGCATTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 26 0.67
41 13 0.33
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (40 bp):
TTAGCGACGCTTGGACAAAAACACCACTAAAAATCAAGCA
Found at i:51048362 original size:40 final size:40
Alignment explanation
Indices: 51048278--51048384 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
51048268 CGCTTGGACA
* *
51048278 AAAAACACCACTAAAAATCAAGCATTAGCGACGCTTTTAC
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGACGCTTTTAC
* * * *
51048318 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCATTTT-T
1 AAAAACGCCGCTAAAAATCAAGCATTAGCGACGC-TTTTAC
* *
51048358 AAAAACGCAGCTAAGAAT-AAGCATTAG
1 AAAAACGCCGCTAAAAATCAAGCATTAG
51048385 TGGCATTTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
39 8 0.14
40 44 0.79
41 4 0.07
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCAAGCATTAGCGACGCTTTTAC
Found at i:51048553 original size:41 final size:41
Alignment explanation
Indices: 51048443--51048630 Score: 203
Period size: 41 Copynumber: 4.8 Consensus size: 41
51048433 TTTTGGGGTA
* *
51048443 TTTAGCGGCG-TTTTTCAGAAGCGCCGCTAA-ACTCGGGCC
1 TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCGGGCC
* * **
51048482 TTTAGCGGC-ATTTTTCAGAAGCGCCGCTAATGCTCAAGCC
1 TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCGGGCC
* *
51048522 TTTAGCGGCGTTTTTTTAAAAGCGCCTCTAATGCTCGGGCC
1 TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCGGGCC
* *
51048563 TTTAGCGGCGTTTTTTCAAAA--G-CGCTAATGGT--GGAC
1 TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCGGGCC
** *
51048599 TTTAGCGGCGTTTTTGAAAAAGTGCCGCTAAT
1 TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAAT
51048631 AATAAAATCT
Statistics
Matches: 128, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
36 22 0.17
38 9 0.07
39 37 0.29
40 15 0.12
41 45 0.35
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCGGGCC
Found at i:51050185 original size:20 final size:20
Alignment explanation
Indices: 51050163--51050225 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
51050153 TTCATGATTT
51050163 AAAATTTTAAAATGAATTTTA
1 AAAATTTTAAAATG-ATTTTA
**
51050184 AAAGATTTT-AAATTTTTTTA
1 AAA-ATTTTAAAATGATTTTA
*
51050204 AAAATTTTAAAAAGATTTTA
1 AAAATTTTAAAATGATTTTA
51050224 AA
1 AA
51050226 CTTTTATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.14
20 18 0.51
21 7 0.20
22 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
AAAATTTTAAAATGATTTTA
Found at i:51050193 original size:10 final size:10
Alignment explanation
Indices: 51050166--51050225 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
51050156 ATGATTTAAA
51050166 ATTTTAAAATG
1 ATTTTAAAA-G
51050177 AATTTTAAAAG
1 -ATTTTAAAAG
**
51050188 ATTTTAAATT
1 ATTTTAAAAG
*
51050198 TTTTTAAAA-
1 ATTTTAAAAG
51050207 ATTTTAAAAAG
1 ATTTT-AAAAG
51050218 ATTTTAAA
1 ATTTTAAA
51050226 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.10
10 22 0.54
11 6 0.15
12 9 0.22
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:51052618 original size:5 final size:5
Alignment explanation
Indices: 51052608--51052676 Score: 52
Period size: 5 Copynumber: 13.2 Consensus size: 5
51052598 TTATAATGTT
* * *
51052608 TTTTA TTTTA TTTTA -TGTA TTTACA TTTCTT TTTTA TTTTA TTTTA TAATGTT-
1 TTTTA TTTTA TTTTA TTTTA TTT-TA TTT-TA TTTTA TTTTA TTTTA T--T-TTA
51052661 TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA T
51052677 GTATTTACAT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.10
5 35 0.69
6 7 0.14
7 2 0.04
8 2 0.04
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:51052644 original size:31 final size:31
Alignment explanation
Indices: 51052606--51052695 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 31
51052596 GCTTATAATG
*
51052606 TTTTTTATTTTATTTTATGTATTTACATTTC
1 TTTTTTATTTTATTTTATGTATTTACATTTA
*
51052637 TTTTTTATTTTA--TT-T-TA--TA-A--TG
1 TTTTTTATTTTATTTTATGTATTTACATTTA
51052659 TTTTTTATTTTATTTTATGTATTTACATTTA
1 TTTTTTATTTTATTTTATGTATTTACATTTA
51052690 TTTTTT
1 TTTTTT
51052696 GACTTGTTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
22 13 0.27
24 3 0.06
25 3 0.06
26 2 0.04
27 2 0.04
28 3 0.06
29 3 0.06
31 19 0.40
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (31 bp):
TTTTTTATTTTATTTTATGTATTTACATTTA
Found at i:51053396 original size:12 final size:12
Alignment explanation
Indices: 51053379--51053406 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51053369 GCTAGCCATG
51053379 ATGTTACTATTA
1 ATGTTACTATTA
51053391 ATGTTACTATTA
1 ATGTTACTATTA
51053403 ATGT
1 ATGT
51053407 CCTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (12 bp):
ATGTTACTATTA
Found at i:51054717 original size:43 final size:42
Alignment explanation
Indices: 51054654--51055005 Score: 330
Period size: 43 Copynumber: 8.3 Consensus size: 42
51054644 TTATGACCTT
*
51054654 TAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
** * * * *
51054697 TAGCGGTATTTGTAGAAAAAGTGCCGCTAAAGGTTAGGTTCTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51054740 TAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51054783 TAGCGGCGTTTGTGGAAAAAGCGCTGCTAAAAGTCATGATCTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * ** * * *
51054826 TAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
51054869 TAGCAGCGTTTGTGATAAAAGCG-C-CTAAAGGTCATGATCTT
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
51054910 TAGCGGCGTTTTTGAGAAAGCGCCGCTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
51054952 TAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGATCATGGTCTA
1 TAGCGGCGTTTG-TGAAAAAGCGCCGCTAAAGGTCATGTTCTA
*
51054995 TAGTGGCGTTT
1 TAGCGGCGTTT
51055006 ATTTATAAAA
Statistics
Matches: 242, Mismatches: 60, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
40 6 0.02
41 28 0.12
42 29 0.12
43 175 0.72
44 4 0.02
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (42 bp):
TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
Found at i:51054801 original size:86 final size:86
Alignment explanation
Indices: 51054651--51055005 Score: 416
Period size: 86 Copynumber: 4.2 Consensus size: 86
51054641 TTTTTATGAC
* * * * ** *
51054651 CTTTAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGTATTTGTAGAAAA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAA
* * *
51054716 AGTGCCGCTAAAGGTTAGGTT
66 AGCGCCGCTAAAGGTCAGGAT
* *
51054737 CTTTAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAA
* * *
51054802 AGCGCTGCTAAAAGTCATGAT
66 AGCGCCGCTAAAGGTCAGGAT
* ** * *
51054823 CTTTAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTATAGCAGCGTTTGT-GATAA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGA-AA
*
51054887 AAGCG-C-CTAAAGGTCATGAT
65 AAGCGCCGCTAAAGGTCAGGAT
* *
51054907 CTTTAGCGGCGTTTTTGAG-AAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGG-AA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTG-TGGAAA
*
51054970 AAGCGCCGCTAAAGATCATGG-T
65 AAGCGCCGCTAAAGGTCA-GGAT
*
51054992 CTATAGTGGCGTTT
1 CTTTAGTGGCGTTT
51055006 ATTTATAAAA
Statistics
Matches: 229, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
83 40 0.17
84 32 0.14
85 25 0.11
86 132 0.58
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (86 bp):
CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTGGAAAA
AGCGCCGCTAAAGGTCAGGAT
Found at i:51054963 original size:169 final size:172
Alignment explanation
Indices: 51054680--51055005 Score: 448
Period size: 169 Copynumber: 1.9 Consensus size: 172
51054670 AAAAGCGCCG
* * * * * *
51054680 CTAAAGGTCATGTTCTATAGCGGTATTTGTAGAAAAAGTGCCGCTAAAGGTTAGGTTCTTTAGTG
1 CTAAAGGTCATGTTCTATAGCAGCATTTGTAGAAAAAGCGCCGCTAAAGGTCAGGATCTTTAGCG
* *
51054745 GCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTATAGCGGCGTTTG-TGGAAAAAGCGCTG
66 GCGTTTGTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGG-AAAAGCGCCG
*
51054809 CTAAA-AGTCATGATCTTTAGTGGCGTTTTTGGGAGGAGTGCCA
130 CTAAAGA-TCATGATCTATAGTGGCGTTTTTGGGAGGAGTGCCA
* * *
51054852 CTAAAGGTCTTGTTCTATAGCAGCGTTTGT-GATAAAAGCG-C-CTAAAGGTCATGATCTTTAGC
1 CTAAAGGTCATGTTCTATAGCAGCATTTGTAGA-AAAAGCGCCGCTAAAGGTCAGGATCTTTAGC
* *
51054914 GGCGTTTTTGAG-AAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCG
65 GGCGTTTGTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCG
*
51054978 CTAAAGATCATGGTCTATAGTGGCGTTT
130 CTAAAGATCATGATCTATAGTGGCGTTT
51055006 ATTTATAAAA
Statistics
Matches: 136, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
169 69 0.51
170 32 0.24
171 3 0.02
172 32 0.24
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (172 bp):
CTAAAGGTCATGTTCTATAGCAGCATTTGTAGAAAAAGCGCCGCTAAAGGTCAGGATCTTTAGCG
GCGTTTGTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
TAAAGATCATGATCTATAGTGGCGTTTTTGGGAGGAGTGCCA
Found at i:51063743 original size:702 final size:702
Alignment explanation
Indices: 51059814--51064035 Score: 7045
Period size: 703 Copynumber: 6.0 Consensus size: 702
51059804 GTTTGGCTTA
* * * ** * **
51059814 TCCATGACTTTTTGGCTCATTTTAAACCATTAAAACTCAATG-TTCTTTCAAATATTTTGTGGTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTT-TTTCAAATATTTTATTATT
* * * *
51059878 TTATGAATATTAATTTAAAGATCAAATGTAATTCTAAAACTAGAAATTTCTTTTCATGAAAAAGC
65 TTAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGC
** * * * * * * *
51059943 ATAACCAAAAGCCTAAGATATTGGGGCTCAAAACATTGAAAAT-GTCACAACTTGC-CTAGAATT
130 -GCATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTC-AGAATA
* * * * * *** *
51060006 TCTAAGTTTTATATTTCAAGTAGGCTACTTTGGGAGCTTAAAGATCGACTAA-A-ATGGGTA-AC
193 TCGAAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGC--ATAGTTCTTTTAACACAT---AACAC
* * * * * * * *
51060068 AA------TAGAAAAACATACCAATAAAAAAACTACATTTTATGCACGACGAATCATCTAAAGAT
253 AATTTGGCTATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCT
** *
51060127 CGACTA---A-AATGGGTAACAATAGATGGTTTTAAAAAGCCTTAAATTTAGTTACCCAAATATG
318 CGACTAGCTAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATG
* * * ** *
51060188 TT-GAAAGCTTTAAGTTTAGGGTTTCGACTTAGGTTTTAGTTTAAGGTTTCAGTTTGGGGTTTTA
383 TTCGAAA-CTTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGG-TTT-
* * * **
51060252 TATTCGATTTTG-TTTTAGAGTTCTGATTTCAATGTTAGAATTCGTTTTGG-TTTGGAGTTTTGA
445 TA---GA-TTTGATTTT---GCTCTG---TCAA-ATT----TT-GTTTAGGTTTTGG-GTTTCAA
* * * * *
51060315 TTTCAAGTCATTTCGGTTGTGCATTAACCT-CTTATGTAACTAA-CTTAGGGTGGTAATTCTACA
493 TTTCAAGTCATTTCGGTTGTGCAATAACCTCCTGA-GTAACTAACCTT-GTGTTGTAATTTTACA
* *
51060378 ATTTTGAAATACATATAAATATAAAAATTCTAAAAAAATT-AAAATTTAATTTAATATGATGTTA
556 ATTTTGAAATACATATAAATATACAAATTCTAAAAAAATTGAAAA-TAAATTTAATATGATGTTA
* *
51060442 ACCTTTAATAAAACCTAATTTGGCCAAAAATAATATTAAAATGAGTTAAAATAAAAAAAGATTGT
620 AGCTTTAATAAAACTTAATTTGGCCAAAAATAATATTAAAATGAGTTAAAATAAAAAAAGATTGT
51060507 CTTCTATATTTTAAAATT
685 CTTCTATATTTTAAAATT
51060525 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
51060590 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
66 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
51060655 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
131 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
51060720 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
196 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
*
51060785 TATAAAAACATACTAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
261 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
51060850 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
326 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
51060915 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
391 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
51060980 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
456 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
51061045 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
521 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
51061110 TAAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAA
586 T-AAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAA
51061175 TAATATTAAAATGAGTTAAAATAAAAAAAGATTGTCTTCTATATTTTAAAATT
650 TAATATTAAAATGAGTTAAAATAAAAAAAGATTGTCTTCTATATTTTAAAATT
51061228 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
51061293 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
66 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
51061358 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
131 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
51061423 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
196 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
*
51061488 TATAAAAACATACTAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
261 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
*
51061553 TAGAATGGACAACAATAGATGATTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
326 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
51061618 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
391 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
51061683 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
456 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
51061748 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
521 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
51061813 TAAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAA
586 T-AAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAA
51061878 TAATATTAAAATGAGTTAAAATAAAAAAAAGATTGTCTTCTATATTTTAAAATT
650 TAATATTAAAATGAGTTAAAAT-AAAAAAAGATTGTCTTCTATATTTTAAAATT
51061932 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
*
51061997 TAAGAAGATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
66 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
51062062 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
131 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
51062127 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
196 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
51062192 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
261 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
51062257 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTT-----C
326 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
51062317 ---------GGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
391 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
51062373 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
456 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
51062438 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
521 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
51062503 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
586 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
51062568 AATATTAAAATGAGTTAAAATAAAAAAAGATTGTCTTCTATATTTTAAAATT
651 AATATTAAAATGAGTTAAAATAAAAAAAGATTGTCTTCTATATTTTAAAATT
*
51062620 TCCATGACATTTTGGTTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
51062685 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
66 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
51062750 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
131 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
51062815 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
196 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
*
51062880 TATAAAAACATACTAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
261 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
51062945 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
326 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
51063010 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
391 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
51063075 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
456 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
51063140 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
521 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
51063205 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
586 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
51063270 AATATTAAAATGAGTTAAAATAAAAAAAAGATTGTCTTCTATATTTTAAAATT
651 AATATTAAAATGAGTTAAAAT-AAAAAAAGATTGTCTTCTATATTTTAAAATT
51063323 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
1 TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
51063388 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
66 TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
51063453 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
131 CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
*
51063518 AAGTTTTCTATTTTAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
196 AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
51063583 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
261 TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
51063648 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTT-----C
326 TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
51063708 ---------GGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
391 TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
51063764 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
456 TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
51063829 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
521 CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
51063894 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
586 TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
** ****** *
51063959 AATATTAAAATGAAATAAAAT-AATTTTTTTTGTAATT-TATATTTTAAAATT
651 AATATTAAAATGAGTTAAAATAAAAAAAGATTGT-CTTCTATATTTTAAAATT
* *
51064010 TCCATGACTTTTTGGCTCAATTTAAG
1 TCCATGACATTTTGGCTCATTTTAAG
51064036 ATTTCATAGA
Statistics
Matches: 3388, Mismatches: 83, Indels: 104
0.95 0.02 0.03
Matches are distributed among these distances:
687 44 0.01
688 414 0.12
689 355 0.10
690 187 0.06
693 1 0.00
698 1 0.00
699 1 0.00
702 363 0.11
703 1204 0.36
704 416 0.12
707 2 0.00
708 5 0.00
709 12 0.00
710 36 0.01
711 171 0.05
712 3 0.00
713 4 0.00
714 6 0.00
715 54 0.02
717 2 0.00
718 4 0.00
719 99 0.03
720 4 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (702 bp):
TCCATGACATTTTGGCTCATTTTAAGCCATCAAAACTTTATGCTTTTTCAAATATTTTATTATTT
TAAGAATATAAATTTAAAGATCAAATGTAATTCTAAAGCTAGAAATTTCATTTCATGAAAAAGCG
CATCAAAAGCCTAAGATATTAGGGCTCAAAACATTTATACTCATCACAACTTGCTCAGAATATCG
AAGTTTTCTATTTCAAGTAGGCTACTTTGGAAGCATAGTTCTTTTAACACATAACACAATTTGGC
TATAAAAACATACCAATAAAAAGATTGCATTTTATACAAGATGAATCATCTAAAGCTCGACTAGC
TAGAATGGACAACAATAGATGGTTTTAAAAATCCTTAAATTTAGTTACCCAAATATGTTCGAAAC
TTTAAGTTTGGGGTTTCAATTTAAATTTTAGTTTAAGGTTTTAGTTTGGGGTTTTAGATTTGATT
TTGCTCTGTCAAATTTTGTTTAGGTTTTGGGTTTCAATTTCAAGTCATTTCGGTTGTGCAATAAC
CTCCTGAGTAACTAACCTTGTGTTGTAATTTTACAATTTTGAAATACATATAAATATACAAATTC
TAAAAAAATTGAAAATAAATTTAATATGATGTTAAGCTTTAATAAAACTTAATTTGGCCAAAAAT
AATATTAAAATGAGTTAAAATAAAAAAAGATTGTCTTCTATATTTTAAAATT
Found at i:51067277 original size:9 final size:8
Alignment explanation
Indices: 51067258--51067291 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
51067248 CATTATGGAG
51067258 AAAGTAAAA
1 AAAG-AAAA
*
51067267 AAGGAAAA
1 AAAGAAAA
51067275 AAAGAAAA
1 AAAGAAAA
51067283 AAAGAAAA
1 AAAGAAAA
51067291 A
1 A
51067292 TGAGTAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 20 0.87
9 3 0.13
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (8 bp):
AAAGAAAA
Found at i:51068154 original size:17 final size:18
Alignment explanation
Indices: 51068132--51068166 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51068122 TTAGAATTAC
*
51068132 GGGCCC-CATGCTCGTGT
1 GGGCCCACAAGCTCGTGT
51068149 GGGCCCACAAGCTCGTGT
1 GGGCCCACAAGCTCGTGT
51068167 AGCCTACACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (18 bp):
GGGCCCACAAGCTCGTGT
Found at i:51071227 original size:27 final size:26
Alignment explanation
Indices: 51071143--51071229 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
51071133 GGTTTCTGAT
*
51071143 TGGCGGCACCAAAGGT-TCTATACTGAC
1 TGGCGGCACCAATGGTGTC-ATA-TGAC
** * *
51071170 TGGCGGCACTGATGGTGCCA-ATGAGGT
1 TGGCGGCACCAATGGTGTCATATGA--C
51071197 TGGCGGCACCAATGGTGTCATATTGAC
1 TGGCGGCACCAATGGTGTCATA-TGAC
51071224 TGGCGG
1 TGGCGG
51071230 GACTATTCGT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
25 3 0.07
26 1 0.02
27 37 0.80
28 2 0.04
29 3 0.07
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (26 bp):
TGGCGGCACCAATGGTGTCATATGAC
Found at i:51074657 original size:45 final size:45
Alignment explanation
Indices: 51074607--51074710 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
51074597 TTTATTCCCT
* * *
51074607 CTTCTTCTTCTTTCTTTTTTTTCTCTTCTCCATTCCTTTTCTTTC
1 CTTCTTCTTCTTTCTTCTTCTTCTCCTCTCCATTCCTTTTCTTTC
* * *
51074652 CTTCTT-TTTTCTTCTTCTTCTTGTCCTCTCCTTTCCTTTTCTTTC
1 CTTCTTCTTCT-TTCTTCTTCTTCTCCTCTCCATTCCTTTTCTTTC
*
51074697 TTTCTTCTTCTTTC
1 CTTCTTCTTCTTTC
51074711 CCTCTCCTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
44 3 0.06
45 43 0.88
46 3 0.06
ACGTcount: A:0.01, C:0.32, G:0.01, T:0.66
Consensus pattern (45 bp):
CTTCTTCTTCTTTCTTCTTCTTCTCCTCTCCATTCCTTTTCTTTC
Found at i:51074686 original size:35 final size:35
Alignment explanation
Indices: 51074647--51074719 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
51074637 CATTCCTTTT
*
51074647 CTTTCCTTCTTTTTTC-TTCTTCTTCTTGT-CCTCTC
1 CTTTCCTT-TTCTTTCTTTCTTCTTCTT-TCCCTCTC
51074682 CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
1 CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
51074717 CTT
1 CTT
51074720 CTCTCCCCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
34 7 0.20
35 28 0.80
ACGTcount: A:0.00, C:0.36, G:0.01, T:0.63
Consensus pattern (35 bp):
CTTTCCTTTTCTTTCTTTCTTCTTCTTTCCCTCTC
Found at i:51077663 original size:29 final size:29
Alignment explanation
Indices: 51077620--51077699 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
51077610 TTCAGTGTTG
* *
51077620 CGGATATACTGCCAGAACTCCAATATTTA
1 CGGATAAATTGCCAGAACTCCAATATTTA
* * *
51077649 CGGATTAATCT-CCAGAACTCCCATATTTG
1 CGGATAAAT-TGCCAGAACTCCAATATTTA
*
51077678 TGGATAAATTGCCAGAACTCCA
1 CGGATAAATTGCCAGAACTCCA
51077700 CATAACTCCT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 1 0.02
29 39 0.95
30 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (29 bp):
CGGATAAATTGCCAGAACTCCAATATTTA
Found at i:51085907 original size:17 final size:16
Alignment explanation
Indices: 51085874--51085904 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51085864 GAGAGATATG
51085874 ATAGTTTAATATTTTA
1 ATAGTTTAATATTTTA
51085890 ATAGTTTAATATTTT
1 ATAGTTTAATATTTT
51085905 TAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATAGTTTAATATTTTA
Found at i:51090046 original size:17 final size:18
Alignment explanation
Indices: 51090024--51090057 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51090014 TTTGGGCTGA
*
51090024 GTGGG-CCACACAGGCAT
1 GTGGGCCCAAACAGGCAT
51090041 GTGGGCCCAAACAGGCA
1 GTGGGCCCAAACAGGCA
51090058 GACCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.29, G:0.35, T:0.09
Consensus pattern (18 bp):
GTGGGCCCAAACAGGCAT
Found at i:51090574 original size:40 final size:40
Alignment explanation
Indices: 51090530--51090623 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 40
51090520 CTGATACTAT
* * * * *
51090530 GATGGGCTAAGGTCGTACTGTAGATTTGATATTGTACTGA
1 GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
* * * *
51090570 GATGGGTTAAGGCCCTACTGCATATTTGGTGCTATACTGA
1 GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
51090610 GATGGGCTAAGGCC
1 GATGGGCTAAGGCC
51090624 TAAACACTGA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (40 bp):
GATGGGCTAAGGCCCTACTGCAGATTTGATACTATACTGA
Found at i:51091517 original size:27 final size:28
Alignment explanation
Indices: 51091479--51091546 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 28
51091469 AGATCAAAAT
*
51091479 TTTATTTTAAAAAATTTAAACTTT-TCC
1 TTTATTTTAAAAAATCTAAACTTTCTCC
*
51091506 TTTATTTT-AAAAATCTAAACTTTCTCT
1 TTTATTTTAAAAAATCTAAACTTTCTCC
*
51091533 TTTTTTTTAAAAAA
1 TTTATTTTAAAAAA
51091547 AAAATTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 14 0.39
27 17 0.47
28 5 0.14
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (28 bp):
TTTATTTTAAAAAATCTAAACTTTCTCC
Found at i:51092850 original size:19 final size:20
Alignment explanation
Indices: 51092822--51092865 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
51092812 TATTATAATC
*
51092822 TATATTATAGTAATA-GTTA
1 TATATAATAGTAATACGTTA
*
51092841 TATATAATAGTAGTACGTTA
1 TATATAATAGTAATACGTTA
51092861 TATAT
1 TATAT
51092866 TACTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.45
Consensus pattern (20 bp):
TATATAATAGTAATACGTTA
Found at i:51096237 original size:18 final size:19
Alignment explanation
Indices: 51096196--51096239 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
51096186 ACTTCAACTT
*
51096196 TTTACTTATCTCTCTTACAA
1 TTTA-TTATCCCTCTTACAA
51096216 TTTATTATCCCTCTTA-AA
1 TTTATTATCCCTCTTACAA
51096234 TTTATT
1 TTTATT
51096240 TTGAAGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 11 0.48
20 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATTATCCCTCTTACAA
Found at i:51111941 original size:8 final size:7
Alignment explanation
Indices: 51111909--51111939 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
51111899 TCAACAGAAG
*
51111909 TTTACTT
1 TTTAATT
51111916 TTTAATT
1 TTTAATT
51111923 TTTAATT
1 TTTAATT
51111930 TTTAATT
1 TTTAATT
51111937 TTT
1 TTT
51111940 TATACAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:51112736 original size:14 final size:14
Alignment explanation
Indices: 51112711--51112743 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51112701 TATAAATGGC
51112711 TAAAAATGATTTTTT
1 TAAAAATGA-TTTTT
51112726 TAAAAAT-ATTTTT
1 TAAAAATGATTTTT
51112739 TAAAA
1 TAAAA
51112744 TTTCTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 1 0.06
15 7 0.39
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAAAATGATTTTT
Found at i:51115662 original size:29 final size:31
Alignment explanation
Indices: 51115629--51115704 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
51115619 TTTACCTCAG
51115629 GTTACATTTTAGTCACTTAT-AT-TTGGAAT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
* * * *
51115658 GTTACGTTTTAGTCACTTATGTTATTGTATT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
*
51115689 GTAACATTTTAGTCAC
1 GTTACATTTTAGTCAC
51115705 CGAGCCATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 19 0.49
30 1 0.03
31 19 0.49
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTATGATATTGGAAT
Found at i:51115702 original size:31 final size:29
Alignment explanation
Indices: 51115632--51115704 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
51115622 ACCTCAGGTT
*
51115632 ACATTTTAGTCACTTATATTTGGAATGTT
1 ACATTTTAGTCACTTATATTTGGAATGTA
* * * *
51115661 ACGTTTTAGTCACTTATGTTATTGTATTGTA
1 ACATTTTAGTCACTTAT-AT-TTGGAATGTA
51115692 ACATTTTAGTCAC
1 ACATTTTAGTCAC
51115705 CGAGCCATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 16 0.44
30 1 0.03
31 19 0.53
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (29 bp):
ACATTTTAGTCACTTATATTTGGAATGTA
Found at i:51117186 original size:59 final size:57
Alignment explanation
Indices: 51117107--51117219 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 57
51117097 CCTTTTTTTT
* * * * *
51117107 AAAAATATTTTTTAATTTTTAGAGTTCGGACTAAATTGATAGATTTTGTAAATATTAAC
1 AAAAATATTTTTTAATTTTTAAAATTAGAACTAAAATGA-A-ATTTTGTAAATATTAAC
*
51117166 AAAAA-ATTTATTTATTTTTTAAAATTAGAACTAAAATGAAATTTTGTAAATATT
1 AAAAATATTT-TTTAATTTTTAAAATTAGAACTAAAATGAAATTTTGTAAATATT
51117220 GAAGGCTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 14 0.30
58 5 0.11
59 28 0.60
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (57 bp):
AAAAATATTTTTTAATTTTTAAAATTAGAACTAAAATGAAATTTTGTAAATATTAAC
Found at i:51127112 original size:8 final size:8
Alignment explanation
Indices: 51127096--51127126 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
51127086 AACCATGCCA
51127096 AATTTAAC
1 AATTTAAC
*
51127104 AACTTAAC
1 AATTTAAC
51127112 AATTTAAC
1 AATTTAAC
51127120 AATTTAA
1 AATTTAA
51127127 TCTTTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAC
Found at i:51128385 original size:9 final size:9
Alignment explanation
Indices: 51128371--51128402 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
51128361 AAAAAACATA
*
51128371 TAATTCGGG
1 TAATTCGGT
51128380 TAATTCGGT
1 TAATTCGGT
51128389 TAATTCGGT
1 TAATTCGGT
51128398 TAATT
1 TAATT
51128403 TTTAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:51130144 original size:26 final size:26
Alignment explanation
Indices: 51130115--51130307 Score: 251
Period size: 26 Copynumber: 7.3 Consensus size: 26
51130105 TAAGGAAAAA
*
51130115 CCTTTGTGGCGTAGTATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51130141 CCTTTGTGGCGTAGTATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51130167 CCTTTGTGGCGTAGTATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51130193 CCTTTATGGCGTAATATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51130219 CCTTTGTGGCATAATATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
* * * * *
51130245 CCTTTGTAGTGCAATATAAAAGAATAA
1 CCTTTGTGGCGTAATATGAAAGAA-AG
* * *
51130272 CTTTTGTGGCGTAAAATGAATTGAAAG
1 CCTTTGTGGCGTAATATGAA-AGAAAG
51130299 CCTTTGTGG
1 CCTTTGTGG
51130308 AAAACCATGA
Statistics
Matches: 146, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 119 0.82
27 24 0.16
28 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (26 bp):
CCTTTGTGGCGTAATATGAAAGAAAG
Found at i:51130244 original size:78 final size:79
Alignment explanation
Indices: 51130113--51130334 Score: 259
Period size: 78 Copynumber: 2.8 Consensus size: 79
51130103 GATAAGGAAA
* * *
51130113 AACCTTTGTGGCGTAGTATGAAAGAAAGCCTTTGTGGCGTAGTATGAAAGAAAGCCTTTGTGGCG
1 AACCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCG
* * *
51130178 TAGTATGAAAGAA-
66 CAATATAAAAGAAT
* * * *
51130191 AGCCTTTATGGCGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTAGTG
1 AACCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCG
51130256 CAATATAAAAGAAT
66 CAATATAAAAGAAT
* * * * * *
51130270 AACTTTTGTGGCGTAAAATGAATTGAAAGCCTTTGTGG-AAAACCATGAAAAGAAAGCCTCTGTG
1 AACCTTTGTGGCGTAATATGAA-AGAAAGCCTTTGTGGCATAA-TATG-AAAGAAAGCCTTTGTG
51130334 G
63 G
51130335 TAAATCACGA
Statistics
Matches: 121, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
78 68 0.56
79 21 0.17
80 17 0.14
81 15 0.12
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (79 bp):
AACCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCG
CAATATAAAAGAAT
Found at i:51130351 original size:27 final size:27
Alignment explanation
Indices: 51130293--51130351 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
51130283 TAAAATGAAT
* *
51130293 TGAAAGCCTTTGTGGAAAACCATGAAA
1 TGAAAGCCTCTGTGGAAAACCACGAAA
* * * *
51130320 AGAAAGCCTCTGTGGTAAATCACGAGA
1 TGAAAGCCTCTGTGGAAAACCACGAAA
51130347 TGAAA
1 TGAAA
51130352 ACTTTTGTAG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (27 bp):
TGAAAGCCTCTGTGGAAAACCACGAAA
Found at i:51137801 original size:43 final size:42
Alignment explanation
Indices: 51137738--51138091 Score: 348
Period size: 43 Copynumber: 8.3 Consensus size: 42
51137728 TTATGACCTT
*
51137738 TAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51137781 TAGCGGCATTTGTAGAAAAAGCGCCGCTAAAGGTTAGGTTCTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51137824 TAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51137867 TAGCGACGTTTGTGGAAAAAGCGCCGCTAAAAGTCATGATCTT
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * ** * * *
51137910 TAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * *
51137953 TAGCAGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTT
1 TAGCGGCGTTTGTGA-AAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51137996 TAGCCGCGTTTTTGAGAAAGCGCCGCTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * *
51138038 TAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGATTATGGTCTA
1 TAGCGGCGTTTG-TGAAAAAGCGCCGCTAAAGGTCATGTTCTA
*
51138081 TAGTGGCGTTT
1 TAGCGGCGTTT
51138092 ATTTATAAAA
Statistics
Matches: 247, Mismatches: 59, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
42 36 0.15
43 207 0.84
44 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (42 bp):
TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCATGTTCTA
Found at i:51137885 original size:86 final size:86
Alignment explanation
Indices: 51137735--51138091 Score: 418
Period size: 86 Copynumber: 4.2 Consensus size: 86
51137725 TTTTTATGAC
* * * * * * *
51137735 CTTTAGCGGCGTTTATGAGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCATTTGTAGAAAA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGACGTTTGTGGAAAA
* *
51137800 AGCGCCGCTAAAGGTTAGGTT
66 AGCGCCGCTAAAGGTCAGGAT
* *
51137821 CTTTAGTGGCGTTTGTGAGAAAAGCGTCACTAAAGGTCTTGTTCTATAGCGACGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGACGTTTGTGGAAAA
* *
51137886 AGCGCCGCTAAAAGTCATGAT
66 AGCGCCGCTAAAGGTCAGGAT
* ** *
51137907 CTTTAGTGGCGTTTTTGGGAGGAGTGCCACTAAAGGTCTTGTTCTATAGC-AGCGTTTGT-GATA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGA-CGTTTGTGGA-A
*
51137970 AAAGCGCCGCTAAAGGTCATGAT
64 AAAGCGCCGCTAAAGGTCAGGAT
** * *
51137993 CTTTAGCCGCGTTTTTGAG-AAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGCGTTTGTTGG-AA
1 CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGACGTTTG-TGGAAA
* *
51138056 AAGCGCCGCTAAAGATTATGG-T
65 AAGCGCCGCTAAAGGTCA-GGAT
*
51138078 CTATAGTGGCGTTT
1 CTTTAGTGGCGTTT
51138092 ATTTATAAAA
Statistics
Matches: 232, Mismatches: 33, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
85 65 0.28
86 166 0.72
87 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (86 bp):
CTTTAGTGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCTTGTTCTATAGCGACGTTTGTGGAAAA
AGCGCCGCTAAAGGTCAGGAT
Found at i:51147585 original size:7 final size:8
Alignment explanation
Indices: 51147560--51147594 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
51147550 GATTATGGAG
51147560 AAAGTAAAA
1 AAAG-AAAA
51147569 AAAGGAAAA
1 AAA-GAAAA
51147578 AAAGAAAA
1 AAAGAAAA
51147586 AAAGAAAA
1 AAAGAAAA
51147594 A
1 A
51147595 TGAGTAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 14 0.56
9 10 0.40
10 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (8 bp):
AAAGAAAA
Found at i:51147587 original size:17 final size:17
Alignment explanation
Indices: 51147560--51147594 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51147550 GATTATGGAG
51147560 AAAGTAAAAAAAGGAAAA
1 AAAGTAAAAAAA-GAAAA
51147578 AAAG-AAAAAAAGAAAA
1 AAAGTAAAAAAAGAAAA
51147594 A
1 A
51147595 TGAGTAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 7 0.41
18 4 0.24
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAGTAAAAAAAGAAAA
Found at i:51147993 original size:13 final size:14
Alignment explanation
Indices: 51147975--51148006 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51147965 ACACAAATAG
51147975 CAGAATTA-ATATA
1 CAGAATTAGATATA
51147988 CAGAA-TAGATATA
1 CAGAATTAGATATA
51148001 CAGAAT
1 CAGAAT
51148007 CCTACTGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.12
13 15 0.88
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.25
Consensus pattern (14 bp):
CAGAATTAGATATA
Found at i:51151336 original size:8 final size:9
Alignment explanation
Indices: 51151321--51151350 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
51151311 TAAATTATTA
51151321 TAAAAAAAT
1 TAAAAAAAT
51151330 TAAAAAAAT
1 TAAAAAAAT
51151339 TAAAAAATAT
1 TAAAAAA-AT
51151349 TA
1 TA
51151351 TATATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.80
10 4 0.20
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:51151398 original size:17 final size:17
Alignment explanation
Indices: 51151368--51151401 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51151358 ATTTATTTAC
*
51151368 CAAAATATAAAAAAAAA
1 CAAAAAATAAAAAAAAA
51151385 CAAAAAATAGAAAAAAA
1 CAAAAAATA-AAAAAAA
51151402 GCTGCGTCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (17 bp):
CAAAAAATAAAAAAAAA
Found at i:51151511 original size:27 final size:27
Alignment explanation
Indices: 51151438--51151529 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
51151428 TGGAGGGTTT
* *
51151438 CTGATTGGCGGCACCAAAGGTTCCATA
1 CTGATTGGCGGCACCAATGGTGCCATA
**
51151465 CTGATTGGCGGCACTGATGGTGCCA-A
1 CTGATTGGCGGCACCAATGGTGCCATA
*
51151491 -TGAGGTTGGCGGCACCAATGGTGTCATA
1 CTGA--TTGGCGGCACCAATGGTGCCATA
* *
51151519 TTGACTGGCGG
1 CTGATTGGCGG
51151530 GACTACTCGT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 45 0.85
28 1 0.02
29 3 0.06
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.24
Consensus pattern (27 bp):
CTGATTGGCGGCACCAATGGTGCCATA
Found at i:51151782 original size:3 final size:3
Alignment explanation
Indices: 51151774--51151841 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
51151764 TTTTAGTTAG
51151774 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
51151822 TAT TAT TAT TGT TAG TAT TA
1 TAT TAT TAT TAT TAT TAT TA
51151842 AGATGTTATT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:51154515 original size:160 final size:150
Alignment explanation
Indices: 51154134--51154588 Score: 416
Period size: 161 Copynumber: 2.9 Consensus size: 150
51154124 GCAAGTTGAA
51154134 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTCTCCGCATTTTATTAC
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTT-TCCGCATTTTATTAC
* * *
51154199 TTTAAAAAATATCTTAATTTCTAATTTTATAATTTTACATTATTTCAGTGCGTAATGTTTGAAAT
65 TTTAAAAAATATCTTAATTTCTAATTTTATAATTTTACATTATTCCAATGCATAATGTTTGAAAT
*
51154264 TTATTAATTTAGTGTGTTTTT
130 TTATTAATTTAGTCTGTTTTT
* * * * *
51154285 AAATTAATTTGGTGTAAGAAAAAAACTCTTA-TCCCTGCCATTTGCTT-GTATTATTTTCC-CGA
1 AAA--AA---AGT-T-AGTAAAAAACTCTTACT-TCAGCCATTTG-TTCGTATTTTTTTCCGC-A
* * * *
51154347 TTTTTATTACTTTCAATAAAAATATTTTATTTTCGT-ATTTTATTATTTTATATTATTCCAATGC
56 -TTTTATTACTTT--A-AAAAATATCTTAATTTC-TAATTTTATAATTTTACATTATTCCAATGC
** *
51154411 ATTTTGTTTGAAATATTTGTATTAA-TTATTTCTGAATTTTT
116 ATAATGTTTG-AA-A-TT-TATTAATTTA-GTCTG--TTTTT
* * * *
51154452 AAAAAAGTTAGTAATAAACTCTTACTTCGGCCATTTGTTCATATTTTTTATCCGCATTTTATTAT
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTT-TCCGCATTTTATTAC
** * * * * *
51154517 TTTAAAAAATATCGAAATTTTTAATTTTATCATTTTACATTATTTCAGTGCATTATGTTTGAAAT
65 TTTAAAAAATATCTTAATTTCTAATTTTATAATTTTACATTATTCCAATGCATAATGTTTGAAAT
51154582 TTATTAA
130 TTATTAA
51154589 ATATACAATT
Statistics
Matches: 243, Mismatches: 34, Indels: 52
0.74 0.10 0.16
Matches are distributed among these distances:
151 3 0.01
153 8 0.03
154 2 0.01
155 1 0.00
156 6 0.02
157 51 0.21
158 44 0.18
159 4 0.02
160 41 0.17
161 52 0.21
162 6 0.02
163 1 0.00
164 5 0.02
165 11 0.05
167 8 0.03
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (150 bp):
AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTTCCGCATTTTATTACT
TTAAAAAATATCTTAATTTCTAATTTTATAATTTTACATTATTCCAATGCATAATGTTTGAAATT
TATTAATTTAGTCTGTTTTT
Found at i:51154552 original size:157 final size:152
Alignment explanation
Indices: 51154134--51154588 Score: 417
Period size: 157 Copynumber: 2.9 Consensus size: 152
51154124 GCAAGTTGAA
*
51154134 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTCTCCGCATTTTATTAC
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTT-TCCGCATTTTATTAT
* * *
51154199 TTTAAAAAATATCTTAATTTCTAATTTTATAATTTTACATTATTTCAGTGCGTAATGTTTG-AA-
65 TTTAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
*
51154262 ATTTATTAATTTAGTGTGTTTTT
130 ATTTATTAATTTAGTCTGTTTTT
* * * * *
51154285 AAATTAATTTGGTGTAAGAAAAAAACTCTTA-TCCCTGCCATTTGCTT-GTATTATTTTCC-CGA
1 AAA--AA---AGT-T-AGTAAAAAACTCTTACT-TCAGCCATTTG-TTCGTATTTTTTTCCGC-A
* * * * * *
51154347 TTTTTATTACTTTCAATAAAAATAT-TTTATTTTCGT-ATTTTATTATTTTATATTATTCCAATG
56 -TTTTATTA-TTT-TA-AAAAATATCTTAATTTT--TAATTTTATAATTTTACATTATTTCAGTG
* *
51154410 CATTTTGTTTGAAATATTTGTATTAA-TTATTTCTGAATTTTT
115 CATTATGTTTGAAATA-TT-TATTAATTTA-GTCTG--TTTTT
* * *
51154452 AAAAAAGTTAGTAATAAACTCTTACTTCGGCCATTTGTTCATATTTTTTATCCGCATTTTATTAT
1 AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTT-TCCGCATTTTATTAT
** *
51154517 TTTAAAAAATATCGAAATTTTTAATTTTATCATTTTACATTATTTCAGTGCATTATGTTTG-AA-
65 TTTAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
51154580 ATTTATTAA
130 ATTTATTAA
51154589 ATATACAATT
Statistics
Matches: 241, Mismatches: 34, Indels: 56
0.73 0.10 0.17
Matches are distributed among these distances:
151 3 0.01
153 8 0.03
154 2 0.01
155 1 0.00
156 6 0.02
157 47 0.20
158 45 0.19
159 9 0.04
160 44 0.18
161 45 0.19
162 6 0.02
163 1 0.00
164 5 0.02
165 11 0.05
167 8 0.03
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (152 bp):
AAAAAAGTTAGTAAAAAACTCTTACTTCAGCCATTTGTTCGTATTTTTTTCCGCATTTTATTATT
TTAAAAAATATCTTAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATA
TTTATTAATTTAGTCTGTTTTT
Found at i:51155052 original size:35 final size:34
Alignment explanation
Indices: 51154985--51155056 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
51154975 CATTCCTTTT
51154985 CTTTCCTTCTTTTTCTTCTTCTTCTTGTCCTCTC
1 CTTTCCTTCTTTTTCTTCTTCTTCTTGTCCTCTC
51155019 CTTTCCTT-TTCTTTCTTTCTTCTTCTT-TCCCTCTC
1 CTTTCCTTCTT-TTTC-TTCTTCTTCTTGT-CCTCTC
51155054 CTT
1 CTT
51155057 CTCTCCCCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
33 2 0.06
34 13 0.37
35 20 0.57
ACGTcount: A:0.00, C:0.36, G:0.01, T:0.62
Consensus pattern (34 bp):
CTTTCCTTCTTTTTCTTCTTCTTCTTGTCCTCTC
Found at i:51155305 original size:2 final size:2
Alignment explanation
Indices: 51155292--51155324 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
51155282 ATCCCATTTG
*
51155292 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
51155325 GTTTTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (2 bp):
TC
Found at i:51157994 original size:29 final size:29
Alignment explanation
Indices: 51157951--51158030 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
51157941 TTCAGTGTTG
* *
51157951 CGGATATACTGCCAGAACTCCAATATTTA
1 CGGATAAATTGCCAGAACTCCAATATTTA
* * *
51157980 CGGATTAATCT-CCAGAACTCCCATATTTG
1 CGGATAAAT-TGCCAGAACTCCAATATTTA
*
51158009 TGGATAAATTGCCAGAACTCCA
1 CGGATAAATTGCCAGAACTCCA
51158031 CATAACTCCT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 1 0.02
29 39 0.95
30 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (29 bp):
CGGATAAATTGCCAGAACTCCAATATTTA
Found at i:51167220 original size:18 final size:18
Alignment explanation
Indices: 51167199--51167237 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51167189 GATTGAGAGT
* *
51167199 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
51167217 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
51167235 GAA
1 GAA
51167238 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:51171034 original size:17 final size:16
Alignment explanation
Indices: 51171001--51171031 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51170991 GAGAGATATG
51171001 ATAGTTTAATATTTTA
1 ATAGTTTAATATTTTA
51171017 ATAGTTTAATATTTT
1 ATAGTTTAATATTTT
51171032 TAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATAGTTTAATATTTTA
Found at i:51176576 original size:20 final size:20
Alignment explanation
Indices: 51176547--51176584 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51176537 CTCTTTAAAA
*
51176547 AAAGCACTATTTTTAAATTC
1 AAAGCACTATTTTGAAATTC
*
51176567 AAAGCTCTATTTTGAAAT
1 AAAGCACTATTTTGAAAT
51176585 AGTTGTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (20 bp):
AAAGCACTATTTTGAAATTC
Found at i:51176669 original size:26 final size:27
Alignment explanation
Indices: 51176604--51176669 Score: 93
Period size: 26 Copynumber: 2.5 Consensus size: 27
51176594 AGATCAAAAT
*
51176604 TTTATTTTAAAAAATTTAAACTTTTCC
1 TTTATTTTAAAAAATCTAAACTTTTCC
51176631 TTTATTTT-AAAAATCTAAAC-TTTCTC
1 TTTATTTTAAAAAATCTAAACTTTTC-C
51176657 TTT-TTTTAAAAAA
1 TTTATTTTAAAAAA
51176670 AAATTAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
25 8 0.22
26 20 0.56
27 8 0.22
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.52
Consensus pattern (27 bp):
TTTATTTTAAAAAATCTAAACTTTTCC
Found at i:51177295 original size:10 final size:10
Alignment explanation
Indices: 51177257--51177289 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
51177247 ACTCCTACTC
51177257 TATTATATAA
1 TATTATATAA
51177267 TATTATATAA
1 TATTATATAA
51177277 TATTATATAA
1 TATTATATAA
51177287 TAT
1 TAT
51177290 CGTATAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATTATATAA
Found at i:51177295 original size:20 final size:20
Alignment explanation
Indices: 51177257--51177295 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51177247 ACTCCTACTC
*
51177257 TATTATATAATATTATATAA
1 TATTATATAATATCATATAA
*
51177277 TATTATATAATATCGTATA
1 TATTATATAATATCATATA
51177296 GTATACAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TATTATATAATATCATATAA
Found at i:51177706 original size:234 final size:251
Alignment explanation
Indices: 51177153--51177771 Score: 706
Period size: 234 Copynumber: 2.5 Consensus size: 251
51177143 CCTACAACAG
*
51177153 TTATATATTAATTATTATCATATATTATTGTTTATTATTATAGTGGTTGAAAATATGCTCTAAGT
1 TTATATATTAA-T-TT-TCATATATTATTGTTTATTATTATACTGGTT-AAAATATGCTCTAAGT
* * * *
51177218 --CTATACTATTCGTACATTTGAAAGTTAACACTCCTACTCTATTATATAATATTATATAATATT
62 CCCTATACTTTTCGTACATTTGAAAGTTAACACTCCTACTATATTATATAATGTTATATCATA-T
* * ** *
51177281 ATATAATATCGTATAGTATACAGTATATTAATAATTTATATATATTTATCAATGATTTAACATTA
126 -CATAATATCG-ATAGTATACAGTATATTAATAAGTTATATATATGCATCAATGATTAAACATTA
51177346 TAATATCATGCAATACTATATTTTTATTATAATATATAATATAATATTTATATATAATAATACA
189 TAATATCATGCAATACTATATTTTTATTATAATATATAATATAATA-TTATATATAATAATACA
* * ** * * * *
51177410 TTACATATTAATTATT-ATAAATTATTGTTTATTATTATACTAATTGAAATAGGTTTTAAGTCCC
1 TTATATATTAATT-TTCATATATTATTGTTTATTATTATACTGGTTAAAATATGCTCTAAGTCCC
* * * * *
51177474 TATACTTTTCATACATTTAAAAGTTAACATTCTTACTATATTATATAATGCTATATCATATCAT-
65 TATACTTTTCGTACATTTGAAAGTTAACACTCCTACTATATTATATAATGTTATATCATATCATA
*
51177538 GT-T-G-TA-TATA-A-TATATTAAT-AGTT-TATATATGCATCAATGATTAAACATTATAATAT
130 ATATCGATAGTATACAGTATATTAATAAGTTATATATATGCATCAATGATTAAACATTATAATAT
* * * * *
51177595 CATGTAATACTGTATCTTTTA-T-T-ATA-AT-CTGT-A-A-TATA-ATAATAGTACA
195 CATGCAATACTATAT-TTTTATTATAATATATAATATAATATTATATATAATAATACA
*
51177644 TTATATATTAATTTTCATATATTATTGTTTATTATTATACTGGTTAAAATATGCTCTAAGTCCTT
1 TTATATATTAATTTTCATATATTATTGTTTATTATTATACTGGTTAAAATATGCTCTAAGTCCCT
* *
51177709 ATACTTTTCGTACATTTGAAAGTTAGC-CCCCTACTATATTATATAATGTTATATCATATCATA
66 ATACTTTTCGTACATTTGAAAGTTAACACTCCTACTATATTATATAATGTTATATCATATCATA
51177772 CTTTTTTATT
Statistics
Matches: 311, Mismatches: 45, Indels: 35
0.80 0.12 0.09
Matches are distributed among these distances:
233 33 0.11
234 87 0.28
235 4 0.01
237 1 0.00
238 1 0.00
239 2 0.01
240 2 0.01
241 3 0.01
242 1 0.00
243 44 0.14
244 8 0.03
245 9 0.03
246 1 0.00
247 4 0.01
248 2 0.01
250 1 0.00
251 1 0.00
252 1 0.00
253 14 0.05
254 26 0.08
255 54 0.17
256 2 0.01
257 10 0.03
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (251 bp):
TTATATATTAATTTTCATATATTATTGTTTATTATTATACTGGTTAAAATATGCTCTAAGTCCCT
ATACTTTTCGTACATTTGAAAGTTAACACTCCTACTATATTATATAATGTTATATCATATCATAA
TATCGATAGTATACAGTATATTAATAAGTTATATATATGCATCAATGATTAAACATTATAATATC
ATGCAATACTATATTTTTATTATAATATATAATATAATATTATATATAATAATACA
Found at i:51177975 original size:19 final size:20
Alignment explanation
Indices: 51177953--51177998 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
51177943 TATTATAATC
51177953 TATATTATAGTAATA-GTTA
1 TATATTATAGTAATACGTTA
* *
51177972 TATATAATAGTAGTACGTTA
1 TATATTATAGTAATACGTTA
51177992 TATATTA
1 TATATTA
51177999 CTTATTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (20 bp):
TATATTATAGTAATACGTTA
Found at i:51181391 original size:18 final size:19
Alignment explanation
Indices: 51181350--51181393 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
51181340 ACTTCAACTT
*
51181350 TTTACTTATCTCTCTTACAA
1 TTTA-TTATCCCTCTTACAA
51181370 TTTATTATCCCTCTTA-AA
1 TTTATTATCCCTCTTACAA
51181388 TTTATT
1 TTTATT
51181394 TTGAAGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 11 0.48
20 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATTATCCCTCTTACAA
Found at i:51184133 original size:21 final size:23
Alignment explanation
Indices: 51184109--51184157 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
51184099 TACATTTAAT
*
51184109 TTCTATA-CTTTTTAA-AAATTA
1 TTCTATACCTTTCTAACAAATTA
51184130 TTCTATACCTTTCTAATCAAATTA
1 TTCTATACCTTTCTAA-CAAATTA
51184154 TTCT
1 TTCT
51184158 TTTAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 7 0.29
24 10 0.42
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (23 bp):
TTCTATACCTTTCTAACAAATTA
Found at i:51195109 original size:8 final size:7
Alignment explanation
Indices: 51195077--51195107 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
51195067 TCAACAGAAG
*
51195077 TTTACTT
1 TTTAATT
51195084 TTTAATT
1 TTTAATT
51195091 TTTAATT
1 TTTAATT
51195098 TTTAATT
1 TTTAATT
51195105 TTT
1 TTT
51195108 TATACAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:51195901 original size:14 final size:14
Alignment explanation
Indices: 51195876--51195908 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51195866 TATAAATGGC
51195876 TAAAAATGATTTTTT
1 TAAAAATGA-TTTTT
51195891 TAAAAAT-ATTTTT
1 TAAAAATGATTTTT
51195904 TAAAA
1 TAAAA
51195909 TTTCTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 1 0.06
15 7 0.39
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAAAATGATTTTT
Found at i:51198829 original size:29 final size:31
Alignment explanation
Indices: 51198796--51198871 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 31
51198786 TTTACCTCAG
51198796 GTTACATTTTAGTCACTTAT-AT-TTGGAAT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
* * * *
51198825 GTTACGTTTTAGTCACTTATGTTATTGTATT
1 GTTACATTTTAGTCACTTATGATATTGGAAT
*
51198856 GTAACATTTTAGTCAC
1 GTTACATTTTAGTCAC
51198872 CGAGCCATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 19 0.49
30 1 0.03
31 19 0.49
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTATGATATTGGAAT
Found at i:51198869 original size:31 final size:29
Alignment explanation
Indices: 51198799--51198871 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
51198789 ACCTCAGGTT
*
51198799 ACATTTTAGTCACTTATATTTGGAATGTT
1 ACATTTTAGTCACTTATATTTGGAATGTA
* * * *
51198828 ACGTTTTAGTCACTTATGTTATTGTATTGTA
1 ACATTTTAGTCACTTAT-AT-TTGGAATGTA
51198859 ACATTTTAGTCAC
1 ACATTTTAGTCAC
51198872 CGAGCCATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 16 0.44
30 1 0.03
31 19 0.53
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (29 bp):
ACATTTTAGTCACTTATATTTGGAATGTA
Found at i:51200383 original size:58 final size:56
Alignment explanation
Indices: 51200308--51200415 Score: 128
Period size: 58 Copynumber: 1.9 Consensus size: 56
51200298 ACCTTTTTTT
* * * * * *
51200308 AAAATATTTTTTAATTTTTAGAGTTCGGACTAAATTGATAGATTTTGTAAATGTTAAC
1 AAAAAATTTTTTAATTTTTAAAATTAGAACTAAAATGA-A-ATTTTGTAAATGTTAAC
51200366 AAAAAATTTATTT-ATTTTTAAAATTAGAACTAAAATGAAATTTTGTAAAT
1 AAAAAATTT-TTTAATTTTTAAAATTAGAACTAAAATGAAATTTTGTAAAT
51200416 ATTGAAGGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
56 11 0.26
57 1 0.02
58 28 0.65
59 3 0.07
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.44
Consensus pattern (56 bp):
AAAAAATTTTTTAATTTTTAAAATTAGAACTAAAATGAAATTTTGTAAATGTTAAC
Found at i:51203097 original size:73 final size:73
Alignment explanation
Indices: 51203010--51203191 Score: 355
Period size: 73 Copynumber: 2.5 Consensus size: 73
51203000 ACAACTTGAC
51203010 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
51203075 CACTAACA
66 CACTAACA
51203083 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
51203148 CACTAACA
66 CACTAACA
*
51203156 AACTTAGTTGGAATACAACTAAGTTACATCATTACA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACA
51203192 CCCAAATAAT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:51203204 original size:3 final size:3
Alignment explanation
Indices: 51203196--51203224 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51203186 ATTACACCCA
51203196 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51203225 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51207563 original size:3 final size:3
Alignment explanation
Indices: 51207555--51207595 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
51207545 ATTACACCCA
51207555 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51207596 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:51215131 original size:8 final size:8
Alignment explanation
Indices: 51215115--51215145 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
51215105 AACCATGCCA
51215115 AATTTAAC
1 AATTTAAC
*
51215123 AACTTAAC
1 AATTTAAC
51215131 AATTTAAC
1 AATTTAAC
51215139 AATTTAA
1 AATTTAA
51215146 TCTTTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAC
Found at i:51216405 original size:9 final size:9
Alignment explanation
Indices: 51216391--51216422 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
51216381 AAAAAACATA
*
51216391 TAATTCGGG
1 TAATTCGGT
51216400 TAATTCGGT
1 TAATTCGGT
51216409 TAATTCGGT
1 TAATTCGGT
51216418 TAATT
1 TAATT
51216423 TTTAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:51218134 original size:26 final size:26
Alignment explanation
Indices: 51218105--51218272 Score: 219
Period size: 26 Copynumber: 6.4 Consensus size: 26
51218095 TAAGGAAAAA
*
51218105 CCTTTGTGGCGTAGTATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51218131 CCTTTGTGGCGTAGTATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51218157 CCTTTATGGCGTAATATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
*
51218183 CCTTTGTGGCATAATATGAAAGAAAG
1 CCTTTGTGGCGTAATATGAAAGAAAG
* * * *
51218209 CCTTTGTAGTGCAATATAAAAGAATAG
1 CCTTTGTGGCGTAATATGAAAGAA-AG
* * *
51218236 CTTTTGTGGCGTAAAATGAATTGAAAG
1 CCTTTGTGGCGTAATATGAA-AGAAAG
51218263 CCTTTGTGGC
1 CCTTTGTGGC
51218273 AAACCATGAA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 93 0.76
27 27 0.22
28 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (26 bp):
CCTTTGTGGCGTAATATGAAAGAAAG
Found at i:51224649 original size:47 final size:47
Alignment explanation
Indices: 51224598--51224691 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
51224588 TTTAAAATGA
51224598 AAGATTTTGGCCCAAATTTTTATTAGATTTGCTTAATGATTTATCTC
1 AAGATTTTGGCCCAAATTTTTATTAGATTTGCTTAATGATTTATCTC
51224645 AAGATTTTGGCCCAAATTTTTATTAGATTTGCTTAATGATTTATCTC
1 AAGATTTTGGCCCAAATTTTTATTAGATTTGCTTAATGATTTATCTC
51224692 TGAAGTTGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (47 bp):
AAGATTTTGGCCCAAATTTTTATTAGATTTGCTTAATGATTTATCTC
Found at i:51225404 original size:15 final size:16
Alignment explanation
Indices: 51225379--51225410 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
51225369 ATAAATGGCT
51225379 AAAAATGATTTTTTAA
1 AAAAATGATTTTTTAA
51225395 AAAAAT-ATTTTTTAA
1 AAAAATGATTTTTTAA
51225410 A
1 A
51225411 GTTTTTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AAAAATGATTTTTTAA
Found at i:51225632 original size:52 final size:52
Alignment explanation
Indices: 51225531--51225638 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 52
51225521 TTTGTTGACT
* * *
51225531 TTTTTTATATTTATGATCAAATTAATAGAATGTGTAAACATGAGGGGGCTAC
1 TTTTTTATATTTAGGATCAAATTAATAGAATGTGTAAACATGAGAGGGCTAA
* * * *
51225583 TTTTTTATATTTAGGATCAAATTGATAGAATGTGTAAATATTATAGGGCTAA
1 TTTTTTATATTTAGGATCAAATTAATAGAATGTGTAAACATGAGAGGGCTAA
51225635 TTTT
1 TTTT
51225639 GTTACTAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.43
Consensus pattern (52 bp):
TTTTTTATATTTAGGATCAAATTAATAGAATGTGTAAACATGAGAGGGCTAA
Found at i:51227280 original size:15 final size:15
Alignment explanation
Indices: 51227260--51227297 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
51227250 TATATGTAGG
51227260 TATAATAAT-ATATAA
1 TATAATAATAAT-TAA
51227275 TATAATAATAATTAA
1 TATAATAATAATTAA
*
51227290 TACAATAA
1 TATAATAA
51227298 GAGTGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAATAATAATTAA
Found at i:51228797 original size:116 final size:118
Alignment explanation
Indices: 51228592--51228870 Score: 366
Period size: 116 Copynumber: 2.3 Consensus size: 118
51228582 GAGACAGGAT
*
51228592 CTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGA-AGGGATTGATGGCTTAAATCTGTTTC
1 CTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATA-GAATTGATGGCTTAAATCTGTTTC
* * *
51228656 CCTACTACCTTGCGAAGATAGGATTTGCCATCTTCGATCTGCTCCACTACT-G-
65 CCTACTACCTTGCGAAGATAAGATTTGCCATCTTCAATCTGCCCCACTACTAGA
* * * *
51228708 CTACAATCTTTAACCTACTCCACTACTGCTTAGGGAGATAGAATTGGTGGCTTAAATTTGTTTCC
1 CTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTGATGGCTTAAATCTGTTTCC
* * * *
51228773 CTACTACTTTGGGAAGATAAGATTTGTCGTCTTCAATCTGCCCCACTACTGCAGAA
66 CTACTACCTTGCGAAGATAAGATTTGCCATCTTCAATCTGCCCCACTACT--AG-A
* *
51228829 TCTACAAACTTCAACCTACTCCACTGCTGCTCAGGGAGATAG
1 -CTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAG
51228871 GACTGGTGTC
Statistics
Matches: 140, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
116 101 0.72
117 1 0.01
119 1 0.01
122 37 0.26
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (118 bp):
CTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTGATGGCTTAAATCTGTTTCC
CTACTACCTTGCGAAGATAAGATTTGCCATCTTCAATCTGCCCCACTACTAGA
Found at i:51229011 original size:96 final size:96
Alignment explanation
Indices: 51228847--51229129 Score: 298
Period size: 96 Copynumber: 3.0 Consensus size: 96
51228837 CTTCAACCTA
* * *** * * **
51228847 CTCCACTGCTGCTCAGGGAGATAGGACTGGTGTC-TTCGATCTACTTCGCTGCCAGCACAAGAAG
1 CTCCACTGCTACTCAGGGAGATAAGACT-GCCACATTTGATCTACTTCACTGCCAATACAAGAAG
51228911 ACAAGATCTGCTATCTTTGATCTACTTCACTG
65 ACAAGATCTGCTATCTTTGATCTACTTCACTG
*
51228943 CTCCACTGCTACTCAGGGAGATAAGACTGCCACATTTGATCTACTTCACTGCCAATACAGGAAGA
1 CTCCACTGCTACTCAGGGAGATAAGACTGCCACATTTGATCTACTTCACTGCCAATACAAGAAGA
*
51229008 CAAGATCTGCTATCTTTGATCTACTTCGCTG
66 CAAGATCTGCTATCTTTGATCTACTTCACTG
* * * * * *
51229039 --CCA---ATA--CAGGAAGATAAGA-T-CTATTATCTTCGATCTACTTCACTGCCAATATATGA
1 CTCCACTGCTACTCAGGGAGATAAGACTGCCA-CAT-TT-GATCTACTTCACTGCCAATACAAGA
*
51229095 AGACAAGATCTACTATCTTTGATCTACTTCACTG
63 AGACAAGATCTGCTATCTTTGATCTACTTCACTG
51229129 C
1 C
51229130 CAATACTAGA
Statistics
Matches: 163, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
87 2 0.01
88 3 0.02
89 14 0.09
90 55 0.34
91 2 0.01
94 3 0.02
95 2 0.01
96 82 0.50
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (96 bp):
CTCCACTGCTACTCAGGGAGATAAGACTGCCACATTTGATCTACTTCACTGCCAATACAAGAAGA
CAAGATCTGCTATCTTTGATCTACTTCACTG
Found at i:51229174 original size:45 final size:45
Alignment explanation
Indices: 51228977--51229155 Score: 270
Period size: 45 Copynumber: 4.0 Consensus size: 45
51228967 GACTGCCACA
*
51228977 TTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATC
1 TTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACTATC
* * *
51229022 TTTGATCTACTTCGCTGCCAATACAGGAAGATAAGATCTATTATC
1 TTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACTATC
* * *
51229067 TTCGATCTACTTCACTGCCAATATATGAAGACAAGATCTACTATC
1 TTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACTATC
*
51229112 TTTGATCTACTTCACTGCCAATACTA-GAAGACAAGATCTGCTAT
1 TTTGATCTACTTCACTGCCAATAC-AGGAAGACAAGATCTACTAT
51229156 TTTCAACCTG
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 119 0.99
46 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (45 bp):
TTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACTATC
Found at i:51229621 original size:88 final size:87
Alignment explanation
Indices: 51229483--51229707 Score: 265
Period size: 88 Copynumber: 2.6 Consensus size: 87
51229473 TCCATTCTAG
* * * * **
51229483 TTCAA-CTGCTCCGCTACAACCCAGGG-GGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTTGGT
1 TTCAACCTGCTCCGCTGCAA-CCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
* * *
51229546 GCAGGAAGGCAAGATCTGCTATT
65 ACAGGAAGGCAAGATCTACTATC
* *
51229569 TTTAACCTGCTCCGCTGCAACTCAGGGAGGAAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
1 TTCAACCTGCTCCGCTGCAAC-CAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
*
51229634 ACAGGAAGGTAAGATCTACTATC
65 ACAGGAAGGCAAGATCTACTATC
* * * *
51229657 TTCAACCTGTTCTGCTGCAACCGAGAGAGGCAAGGCTAGTGTCTTCAATCT
1 TTCAACCTGCTCCGCTGCAACC-AGGGAGGCAAGGCTAGTGTCTTCGATCT
51229708 ACTCCACTAC
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
86 5 0.04
87 19 0.16
88 93 0.79
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (87 bp):
TTCAACCTGCTCCGCTGCAACCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGTA
CAGGAAGGCAAGATCTACTATC
Found at i:51229779 original size:87 final size:87
Alignment explanation
Indices: 51229688--51229854 Score: 253
Period size: 87 Copynumber: 1.9 Consensus size: 87
51229678 CGAGAGAGGC
* * *
51229688 AAGGCTAGTGTCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
1 AAGGCTAGGGACTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCTCAACCTA
* *
51229753 CTCCGCTGCTGCTCAGGGAAAT
66 CTCCACTACTGCTCAGGGAAAT
* * * *
51229775 AAGGCTGGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCTCAGCCTA
1 AAGGCTAGGGACTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCTCAACCTA
51229840 CTCCACTACTGCTCA
66 CTCCACTACTGCTCA
51229855 AGGAGATAGG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (87 bp):
AAGGCTAGGGACTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTCTCAACCTA
CTCCACTACTGCTCAGGGAAAT
Found at i:51229917 original size:88 final size:88
Alignment explanation
Indices: 51229810--51230140 Score: 302
Period size: 88 Copynumber: 3.8 Consensus size: 88
51229800 ACTACTGCTT
* * *
51229810 AGGGAGATAAGA-TCTGTAAT-TCTCAGCCTACTCCACTACTGCTCAAGGAGATAGGATTCACAA
1 AGGGAGATAAGATTC-GTAATCT-TCAACCTATTCCACTACTGCTCAGGGAGATAGGATTCACAA
* * *
51229873 TCTTCCACTTATTCCACTGTTGA-AC
64 TCTTCAACCTATTCCACTGCT-ACAC
** * * **
51229898 AGGGAGATAAGATTCGTAATCTTCAATTTATTCCACTATTGAC-CAGGGAGATAAGATTCGTAAT
1 AGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTACTG-CTCAGGGAGATAGGATTCACAAT
*
51229962 CTTCAACCTATTCCACTGCTACCC
65 CTTCAACCTATTCCACTGCTACAC
* * * *
51229986 AGGGAGATAGGACTT-GCAATCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTCACAAT
1 AGGGAGATAAGA-TTCGTAATCTTCAACCTATTCCACTACTGCTCAGGGAGATAGGATTCACAAT
* *
51230050 CTTCAACCTATTTCGCTGCGGT-C-C
65 CTTCAACCTATTCCACTGC--TACAC
* ** * *
51230074 AGGGAGATAGGATTCACAATCTTCAACCTATGT-CGCTGCTG-TCCAGGGAGATAGGATTCACAA
1 AGGGAGATAAGATTCGTAATCTTCAACCTAT-TCCACTACTGCT-CAGGGAGATAGGATTCACAA
51230137 TCTT
64 TCTT
51230141 TGATCTGCTT
Statistics
Matches: 204, Mismatches: 28, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
87 5 0.02
88 190 0.93
89 8 0.04
90 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (88 bp):
AGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTACTGCTCAGGGAGATAGGATTCACAATC
TTCAACCTATTCCACTGCTACAC
Found at i:51229992 original size:132 final size:132
Alignment explanation
Indices: 51229810--51230140 Score: 337
Period size: 132 Copynumber: 2.5 Consensus size: 132
51229800 ACTACTGCTT
* * * * *
51229810 AGGGAGATAAGA-TCTGTAAT-TCTCAGCCTACTCCACTACTGCTCAAGGAGATAGGATTCACAA
1 AGGGAGATAAGATTC-GTAATCT-TCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAA
* * * * ** ** **
51229873 TCTTCCACTTATTCCACTGTTGAACAGGGAGATAAGATTCGTAATCTTCAATTTATTCCACTATT
64 TCTTCAACCTATTCCACTGCTGAACAGGGAGATAAGACTCACAATCTTCAACCTATTCCACTACG
51229938 GACC
129 GACC
* *
51229942 AGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTGCTACCCAGGGAGATAGGACTT-GCAAT
1 AGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTGCTGCCCAGGGAGATAGGA-TTCACAAT
** * * * *
51230006 CTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTTCGCTGCGG
65 CTTCAACCTATTCCACTGCTGAACAGGGAGATAAGACTCACAATCTTCAACCTATTCCACTACGG
*
51230071 TCC
130 ACC
* ** * *
51230074 AGGGAGATAGGATTCACAATCTTCAACCTATGT-CGCTGCTGTCCAGGGAGATAGGATTCACAAT
1 AGGGAGATAAGATTCGTAATCTTCAACCTAT-TCCACTGCTGCCCAGGGAGATAGGATTCACAAT
51230138 CTT
65 CTT
51230141 TGATCTGCTT
Statistics
Matches: 163, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
131 2 0.01
132 155 0.95
133 6 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAATC
TTCAACCTATTCCACTGCTGAACAGGGAGATAAGACTCACAATCTTCAACCTATTCCACTACGGA
CC
Found at i:51230039 original size:44 final size:43
Alignment explanation
Indices: 51229698--51230140 Score: 259
Period size: 44 Copynumber: 10.1 Consensus size: 43
51229688 AAGGCTAGTG
* * * * * *
51229698 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGAT-TGCAA
* * * * * * **
51229742 TTTTCAACCTACTCCGCTGCTGCTCAGGGAAATAAGGCTGGGGA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGAT-AGGATTGCAA
* * ** * * * *
51229786 -CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGAT-TGCAA
* * * * *
51229829 T-TCTCAGCCTACTCCACTACTGCTCAAGGAGATAGGATTCACAA
1 TCT-TCAACCTATTCCACTGCTGCTCAGGGAGATAGGATT-GCAA
* * * ** * *
51229873 TCTTCCACTTATTCCACTGTTGAACAGGGAGATAAGATTCGTAA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGATT-GCAA
** ** * *
51229917 TCTTCAATTTATTCCACTATTGAC-CAGGGAGATAAGATTCGTAA
1 TCTTCAACCTATTCCACTGCTG-CTCAGGGAGATAGGATT-GCAA
* *
51229961 TCTTCAACCTATTCCACTGCTACCCAGGGAGATAGGACTTGCAA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGA-TTGCAA
**
51230005 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTCACAA
1 TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGA-TTGCAA
* * * *
51230049 TCTTCAACCTATTTCGCTGC-GGTCCAGGGAGATAGGATTCACAA
1 TCTTCAACCTATTCCACTGCTGCT-CAGGGAGATAGGATT-GCAA
* *
51230093 TCTTCAACCTATGT-CGCTGCTG-TCCAGGGAGATAGGATTCACAA
1 TCTTCAACCTAT-TCCACTGCTGCT-CAGGGAGATAGGATT-GCAA
51230137 TCTT
1 TCTT
51230141 TGATCTGCTT
Statistics
Matches: 322, Mismatches: 64, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
42 3 0.01
43 32 0.10
44 279 0.87
45 8 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
TCTTCAACCTATTCCACTGCTGCTCAGGGAGATAGGATTGCAA
Found at i:51232156 original size:57 final size:57
Alignment explanation
Indices: 51232068--51232184 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
51232058 GGCTCTCATC
51232068 TGAAATGGATTCCAATTCTTTAATATACCCTGCAATAAACCCTGATATATCTTGAAT
1 TGAAATGGATTCCAATTCTTTAATATACCCTGCAATAAACCCTGATATATCTTGAAT
51232125 TGAAATGGATTCCAATTCTTTAATATACCCTGCAATAAACCCTGATATATCTTGAAT
1 TGAAATGGATTCCAATTCTTTAATATACCCTGCAATAAACCCTGATATATCTTGAAT
51232182 TGA
1 TGA
51232185 TTGTTTGATA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (57 bp):
TGAAATGGATTCCAATTCTTTAATATACCCTGCAATAAACCCTGATATATCTTGAAT
Found at i:51236850 original size:9 final size:9
Alignment explanation
Indices: 51236836--51236869 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
51236826 TTATTCCAGC
51236836 AACTAAATT
1 AACTAAATT
51236845 AACTAAGATT
1 AACTAA-ATT
*
51236855 AACTTAATT
1 AACTAAATT
51236864 AACTAA
1 AACTAA
51236870 GATGAGTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (9 bp):
AACTAAATT
Found at i:51236863 original size:19 final size:19
Alignment explanation
Indices: 51236836--51236872 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51236826 TTATTCCAGC
51236836 AACTAAATTAACTAAGATT
1 AACTAAATTAACTAAGATT
*
51236855 AACTTAATTAACTAAGAT
1 AACTAAATTAACTAAGAT
51236873 GAGTAATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (19 bp):
AACTAAATTAACTAAGATT
Found at i:51236892 original size:54 final size:54
Alignment explanation
Indices: 51236826--51236951 Score: 207
Period size: 54 Copynumber: 2.3 Consensus size: 54
51236816 CAACAATAAA
* * *
51236826 TTATTCCAGCAACTAAATTAACTAAGATTAACTTAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAAATGAACTCAATTAACTAAGATGAGTAAT
* *
51236880 TTGTTCCAGCAACTTAATTAACTAAAATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAAATGAACTCAATTAACTAAGATGAGTAAT
51236934 TTATTCCAGCAACTAAAT
1 TTATTCCAGCAACTAAAT
51236952 ACTTATTCCA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAAATGAACTCAATTAACTAAGATGAGTAAT
Found at i:51236917 original size:19 final size:19
Alignment explanation
Indices: 51236890--51236928 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51236880 TTGTTCCAGC
*
51236890 AACTTAATTAACTAAAATG
1 AACTCAATTAACTAAAATG
*
51236909 AACTCAATTAACTAAGATG
1 AACTCAATTAACTAAAATG
51236928 A
1 A
51236929 GTAATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (19 bp):
AACTCAATTAACTAAAATG
Done.