Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 159 of 222
Found at i:51240335 original size:24 final size:24
Alignment explanation
Indices: 51240256--51240337 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
51240246 TACAAGAAGA
51240256 TGAAAGGTTTAAGGAAGATGAAAGG
1 TGAAAGG-TTAAGGAAGATGAAAGG
* *
51240281 CT-AAAAGTTAAAGAAGATGAAAGG
1 -TGAAAGGTTAAGGAAGATGAAAGG
* *
51240305 TGGAAGGTTAAGGGAGATGAAAGG
1 TGAAAGGTTAAGGAAGATGAAAGG
51240329 TGAAAGGTT
1 TGAAAGGTT
51240338 GAACATCCAC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 1 0.02
24 42 0.88
25 4 0.08
26 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.35, T:0.20
Consensus pattern (24 bp):
TGAAAGGTTAAGGAAGATGAAAGG
Found at i:51243196 original size:12 final size:12
Alignment explanation
Indices: 51243179--51243207 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51243169 AAATTCAGCT
51243179 GAACATAATTAA
1 GAACATAATTAA
51243191 GAACATAATTAA
1 GAACATAATTAA
51243203 GAACA
1 GAACA
51243208 CAAGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.21
Consensus pattern (12 bp):
GAACATAATTAA
Found at i:51255199 original size:25 final size:26
Alignment explanation
Indices: 51255143--51255206 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 26
51255133 TTGAGCCAGT
*
51255143 ATTCTTTTATTCTTTTTTTCGAGTAATT
1 ATTCTTTTATTCTTTTTTTC--GTAATC
51255171 ATTCTTTTATTC-TTTTTTC-TACATC
1 ATTCTTTTATTCTTTTTTTCGTA-ATC
51255196 ATTC-TTTATTC
1 ATTCTTTTATTC
51255207 ATTTCATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
24 9 0.26
25 6 0.18
27 7 0.21
28 12 0.35
ACGTcount: A:0.17, C:0.16, G:0.03, T:0.64
Consensus pattern (26 bp):
ATTCTTTTATTCTTTTTTTCGTAATC
Found at i:51260068 original size:87 final size:87
Alignment explanation
Indices: 51259922--51260379 Score: 455
Period size: 87 Copynumber: 5.4 Consensus size: 87
51259912 GGTGAAACAG
51259922 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
*
51259987 GTGGAGCGGATTAACATTCAGA
66 GTGGAGCGGATTAACATCCAGA
*
51260009 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
51260074 GTGGAGCGGATTAACATCCAGA
66 GTGGAGCGGATTAACATCCAGA
** * * * * *
51260096 TCTTATCTTTCTGAGGTTGCA---GAG-AG-CAGATCG-CATCCAGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGA-AGAAAT-CAATCCTATCTCCCTGAAGTTG
* **
51260155 CAGGGGAGCAGACAGAAGAA-AT-CA-A
64 CAGTGGAGC-G---GATTAACATCCAGA
* * ** * ** *
51260180 TCCTATCTCCCTGAAGTTGTAGTGGAGC-G---GATTAACATCCAGATCTTATCTTTCTGAGGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAA-AT-CA-ATCCTATCTCCCTGAAGTT
* * **
51260241 GCAG-AGAGCAGA-TCGCATCCAG-
63 GCAGTGGAGCGGATTAACATCCAGA
*
51260263 TCTTATCTCCCTGAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
51260328 GTGGAGCGGATTAACATCCAGA
66 GTGGAGCGGATTAACATCCAGA
** * *
51260350 TCTTATCTTTCTGAGGTTGCAG-AGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
51260380 TCACATCCAG
Statistics
Matches: 301, Mismatches: 47, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
82 10 0.03
83 58 0.19
84 41 0.14
85 12 0.04
86 28 0.09
87 152 0.50
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (87 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
GTGGAGCGGATTAACATCCAGA
Found at i:51260163 original size:127 final size:127
Alignment explanation
Indices: 51260009--51260549 Score: 965
Period size: 127 Copynumber: 4.3 Consensus size: 127
51259999 AACATTCAGA
*
51260009 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
51260074 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
66 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
* *
51260136 TCTTATCTCCCTGAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
51260201 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
66 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
*
51260263 TCTTATCTCCCTGAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
*
51260328 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCACATCCAG
66 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
* * * * *
51260390 ATTTTATCTCCCTAAAGTTGTAGTGGAGTAGACAGAAGAAATCAATCCTATCTCCTTGAAGTTGC
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGC
*
51260455 AGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCTAG
65 AGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
*
51260518 TCTTATCTCCCTGAACTTGCAGTGGAGCAGAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
51260550 TAAAAATAGC
Statistics
Matches: 395, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
127 276 0.70
128 119 0.30
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (127 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
Found at i:51260528 original size:255 final size:254
Alignment explanation
Indices: 51260009--51260549 Score: 965
Period size: 255 Copynumber: 2.1 Consensus size: 254
51259999 AACATTCAGA
*
51260009 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
*
51260074 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAGTCT
66 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCACATCCAGTCT
* *
51260139 TATCTCCCTGAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGTAGTG
131 TATCTCCCTAAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTG
51260204 GAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
196 GAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
*
51260263 TCTTATCTCCCTGAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
*
51260328 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCACATCCAGATT
66 GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCACATCCAG-TC
* * * *
51260393 TTATCTCCCTAAAGTTGTAGTGGAGTAGACAGAAGAAATCAATCCTATCTCCTTGAAGTTGCAGT
130 TTATCTCCCTAAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCAGT
*
51260458 GGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCTAG
195 GGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
*
51260518 TCTTATCTCCCTGAACTTGCAGTGGAGCAGAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
51260550 TAAAAATAGC
Statistics
Matches: 273, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
254 124 0.45
255 149 0.55
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (254 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCA
GTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCACATCCAGTCT
TATCTCCCTAAAGTTGCAGGGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTG
GAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCATCCAG
Found at i:51262965 original size:3 final size:3
Alignment explanation
Indices: 51262957--51262986 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
51262947 TGATTTCGAC
51262957 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
51262987 TATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:51267128 original size:25 final size:25
Alignment explanation
Indices: 51267082--51267145 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
51267072 TACATTTTTA
*
51267082 CATTCATTTTTGAGCAAATATTCTTT
1 CATTC-TTTTTGAACAAATATTCTTT
* *
51267108 CATTCTTTTTGAATAATTATTCTTT
1 CATTCTTTTTGAACAAATATTCTTT
51267133 CATTC-TTTTGAAC
1 CATTCTTTTTGAAC
51267146 TCTCTTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 7 0.21
25 22 0.65
26 5 0.15
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (25 bp):
CATTCTTTTTGAACAAATATTCTTT
Found at i:51269234 original size:44 final size:44
Alignment explanation
Indices: 51269184--51269327 Score: 191
Period size: 44 Copynumber: 3.3 Consensus size: 44
51269174 GAAGCAGATC
**
51269184 GAAGATTGTGAA-TCCTATCTCCATGGACAATAGTGGAATAGGTT
1 GAAGATTGT-AAGTCCTATCTCCATGGACAGCAGTGGAATAGGTT
* * *
51269228 GAAGATTGCAAGTCATATCTCCTTGGACAGCAGTGGAATAGGTT
1 GAAGATTGTAAGTCCTATCTCCATGGACAGCAGTGGAATAGGTT
* * * *
51269272 GAAGATTGTAAGCCCTATCTCCCTAGACAGCAGTGAAATAGGTT
1 GAAGATTGTAAGTCCTATCTCCATGGACAGCAGTGGAATAGGTT
51269316 GAAGATTGTAAG
1 GAAGATTGTAAG
51269328 CCTTGCCTCC
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 2 0.02
44 86 0.98
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (44 bp):
GAAGATTGTAAGTCCTATCTCCATGGACAGCAGTGGAATAGGTT
Found at i:51269607 original size:50 final size:49
Alignment explanation
Indices: 51269553--51269734 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 49
51269543 TTTGGCAATA
51269553 CAGTGGAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGTGGTG
1 CAGTGGAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGT-GTG
* * * * **
51269603 CAGTGGAACAGATTGAAG-TCACAA-AGGCAAATCTTGCTTCCCCGACAT-TG
1 CAGTGGAAAAGATTGAAGCT-ACAACA-GCGAATCTTACTT-TCC-AGGTGTG
** * *
51269653 CAGTTAAAAAGATTGAAGCTACAATAGCGAATCTTACTTTCCTGGCTGTG
1 CAGTGGAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGG-TGTG
* * *
51269703 CAGTGGAACAGATTGAAGCTACGACAGTGAAT
1 CAGTGGAAAAGATTGAAGCTACAACAGCGAAT
51269735 ATTGTTTCCC
Statistics
Matches: 103, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
49 5 0.05
50 92 0.89
51 4 0.04
52 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (49 bp):
CAGTGGAAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGTGTG
Found at i:51269744 original size:100 final size:99
Alignment explanation
Indices: 51269559--51269770 Score: 277
Period size: 100 Copynumber: 2.1 Consensus size: 99
51269549 AATACAGTGG
51269559 AAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGTGGTGCAGTGGAACAGATTGAAGTCA
1 AAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGTGGTGCAGTGGAACAGATTGAAGTCA
* * *
51269624 CAAAGGCAAATCTTGCTTCCCCGACATTGCAGTTA
66 CAAAGG-AAATATTGCTTCCCCAACATTACAGTTA
* *
51269659 AAAAGATTGAAGCTACAATAGCGAATCTTACTTTCCTGGCT-GTGCAGTGGAACAGATTGAAG-C
1 AAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGG-TGGTGCAGTGGAACAGATTGAAGTC
* * *
51269722 TACGACAGTG-AATATTGTTTCCCCAATATTACAGTTA
65 -AC-AAAG-GAAATATTGCTTCCCCAACATTACAGTTA
*
51269759 AAAAAATTGAAG
1 AAAAGATTGAAG
51269771 AAAATAATCC
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
99 1 0.01
100 93 0.94
101 4 0.04
102 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAAGATTGAAGCTACAACAGCGAATCTTACTTTCCAGGTGGTGCAGTGGAACAGATTGAAGTCA
CAAAGGAAATATTGCTTCCCCAACATTACAGTTA
Found at i:51269923 original size:44 final size:43
Alignment explanation
Indices: 51269862--51270479 Score: 391
Period size: 44 Copynumber: 14.5 Consensus size: 43
51269852 TTGCATACAG
51269862 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC-AAAGAAACCAA
* * * * ** *
51269906 TCCTATCTCCTTAAAGTTGCAGTGGAGCGGATTAA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAGAAAC-CA-A
* * * * * *
51269950 TCTTATCTCTCTGAAGTTGCAGTAGAGCTGATC---GTATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAGAAACCAA
* *
51269991 TCTTATATCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAGAAACCAA
** **
51270035 TCCCATCTCCCTGAAGTTGCAGTGGAGCAG---ATTAAA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAGAAACCA-A
* * * * * * *
51270075 TCTTATCTCTCTGAAGTTACAGTAGAGCATATC---GTATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAGAAACCAA
*
51270116 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAGAAACCAA
* * * **
51270160 TCCTATCTCCCTGAAGTTGCAGTGGAG-TG--GATTAAA-CATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAGAAACCA-A
* * * * * *
51270200 TCTTATCTCTCTAAAGTTGCAGTAGAGCAGATC---GTATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAGAAACCAA
*
51270241 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACAAAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC-AAAGAAACCAA
* * ** *
51270285 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAGAAAC-CA-A
** * * * * *
51270329 TCTTATCTTGCTAAAGTTGCAGTAGAGCAGATC---GCATCCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAGAAACCAA
*
51270370 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAACCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAGAAACCAA
* * * ** *
51270414 TCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCA-TAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAGAAACCA-A
*
51270458 TCTTATCTCTCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
51270480 AGAGTAGATC
Statistics
Matches: 435, Mismatches: 102, Indels: 74
0.71 0.17 0.12
Matches are distributed among these distances:
39 4 0.01
40 59 0.14
41 110 0.25
42 14 0.03
43 14 0.03
44 232 0.53
45 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAGAAACCAA
Found at i:51270043 original size:129 final size:129
Alignment explanation
Indices: 51269767--51270504 Score: 1070
Period size: 125 Copynumber: 5.8 Consensus size: 129
51269757 TAAAAAAATT
** *
51269767 GAAGAAAATAATCCTATCTCCCT-AAGGTTGCAGTGGAGCAGATTAAAACCAAAGATCTTATCTC
1 GAAGAAACCAATCCTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTC
* * *
51269831 TCTGAAGTTGCAG-AGAGCAGATTGCATACAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
65 TCTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* * * *
51269895 AAAGAAACCAATCCTATCTCCTTAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
* * *
51269960 CTGAAGTTGCAGTAGAGCTGATCGTATCCAGTCTTATATCCCTGAAGTTGCAGTGGAGCAGATA
66 CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
*
51270024 GAAGAAACCAATCCCATCTCCCTGAAGTTGCAGTGGAGCAGATT--AA--ACAGATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
* * *
51270085 CTGAAGTTACAGTAGAGCATATCGTATCCAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACA
66 CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
** *
51270149 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATT--AA--ACATATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
* *
51270210 CTAAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACA
66 CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* *
51270274 AAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCT-T
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
* * *
51270338 GCTAAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA
66 -CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
* * *
51270403 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCATAGATCTTATCTCT
1 GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
* * *
51270468 CTGAAGTTGCAG-AGAGTAGATCGCAT-CAGACTTATCT
66 CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCT
51270505 TTAAAATTAT
Statistics
Matches: 556, Mismatches: 46, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
125 231 0.42
127 14 0.03
128 82 0.15
129 228 0.41
130 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (129 bp):
GAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCT
CTGAAGTTGCAGTAGAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACA
Found at i:51271864 original size:3 final size:3
Alignment explanation
Indices: 51271856--51271886 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
51271846 ATTAATACTC
51271856 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
51271887 AACCATGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:51272030 original size:30 final size:28
Alignment explanation
Indices: 51271996--51272070 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
51271986 AAAATATACA
*
51271996 TTTATTTTCTATAGTATATATATACACTTT
1 TTTATTTTCTATAGTAT-TATAAACA-TTT
* * *
51272026 TTTATTTT-TAAATTATTATAAATATTT
1 TTTATTTTCTATAGTATTATAAACATTT
51272053 TTTATTATTCTATA-TATT
1 TTTATT-TTCTATAGTATT
51272071 CCATTATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 9 0.24
28 12 0.32
29 9 0.24
30 8 0.21
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTATTTTCTATAGTATTATAAACATTT
Found at i:51274413 original size:33 final size:34
Alignment explanation
Indices: 51274375--51274442 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 34
51274365 AATTTAATAT
* *
51274375 AAATATAAGTAGTTC-CTTAAC-AAATTTTCAAGC
1 AAATATAAGTA-ATCACTTAACAAAAATTTCAAGC
51274408 AAATATAAGTAATCACTTAACAAAAATTTCAAGC
1 AAATATAAGTAATCACTTAACAAAAATTTCAAGC
51274442 A
1 A
51274443 TAACATAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 2 0.06
33 17 0.55
34 12 0.39
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (34 bp):
AAATATAAGTAATCACTTAACAAAAATTTCAAGC
Found at i:51275850 original size:2 final size:2
Alignment explanation
Indices: 51275843--51275867 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51275833 TGCTATAATC
51275843 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
51275868 AATTGACCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51276415 original size:16 final size:17
Alignment explanation
Indices: 51276394--51276425 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51276384 TTCTAACCCT
51276394 TAAAATAAT-ATTATAA
1 TAAAATAATAATTATAA
51276410 TAAAATAATAATTATA
1 TAAAATAATAATTATA
51276426 GATATATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAATAATAATTATAA
Found at i:51285953 original size:17 final size:18
Alignment explanation
Indices: 51285905--51285954 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
51285895 AATGAAAGTG
* *
51285905 ATTTCATTTAGTTTTTAT
1 ATTTTATTTTGTTTTTAT
*
51285923 ATTTTA-TTTATTTTTAT
1 ATTTTATTTTGTTTTTAT
51285940 -TTTTATTTTGTTTTT
1 ATTTTATTTTGTTTTT
51285955 TTTGGTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 5 0.19
17 17 0.63
18 5 0.19
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (18 bp):
ATTTTATTTTGTTTTTAT
Found at i:51285963 original size:21 final size:20
Alignment explanation
Indices: 51285917--51285989 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
51285907 TTCATTTAGT
*
51285917 TTTTATATTTTATTTATTTTTA
1 TTTT-TATTTTGTTT-TTTTTA
*
51285939 TTTTTATTTTGTTTTTTTTG
1 TTTTTATTTTGTTTTTTTTA
* *
51285959 GTTTTAGTTTTAGTTTTTAGTTA
1 TTTTTA-TTTT-GTTTTT-TTTA
51285982 -TTTTATTT
1 TTTTTATTT
51285990 AATTATGCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
20 10 0.23
21 16 0.37
22 15 0.35
23 2 0.05
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (20 bp):
TTTTTATTTTGTTTTTTTTA
Found at i:51289085 original size:5 final size:5
Alignment explanation
Indices: 51289075--51289115 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
51289065 CCCAAGTATT
51289075 CAACC CAACC CAACC CAATTACC CAACC CAACC CAACC CAA
1 CAACC CAACC CAACC C-A--ACC CAACC CAACC CAACC CAA
51289116 TCATAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 27 0.82
6 1 0.03
7 1 0.03
8 4 0.12
ACGTcount: A:0.41, C:0.54, G:0.00, T:0.05
Consensus pattern (5 bp):
CAACC
Found at i:51289237 original size:9 final size:9
Alignment explanation
Indices: 51289219--51289285 Score: 66
Period size: 9 Copynumber: 7.4 Consensus size: 9
51289209 GTAGTGATTC
*
51289219 AATTCAGTT
1 AATTCGGTT
51289228 AATTCGGTT
1 AATTCGGTT
51289237 AATTCAGG-T
1 AATTC-GGTT
51289246 AATTCGGTT
1 AATTCGGTT
*
51289255 AATTCGGGT
1 AATTCGGTT
*
51289264 AA-TCTAGTT
1 AATTC-GGTT
*
51289273 AATTCGGGT
1 AATTCGGTT
51289282 AATT
1 AATT
51289286 TTTCACTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 4 0.08
9 40 0.83
10 4 0.08
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:51289242 original size:18 final size:18
Alignment explanation
Indices: 51289219--51289285 Score: 82
Period size: 18 Copynumber: 3.7 Consensus size: 18
51289209 GTAGTGATTC
*
51289219 AATTCAGTTAATTCGGTT
1 AATTCAGGTAATTCGGTT
51289237 AATTCAGGTAATTCGGTT
1 AATTCAGGTAATTCGGTT
* *
51289255 AATTCGGGTAA-TCTAGTT
1 AATTCAGGTAATTC-GGTT
*
51289273 AATTCGGGTAATT
1 AATTCAGGTAATT
51289286 TTTCACTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.05
18 41 0.93
19 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (18 bp):
AATTCAGGTAATTCGGTT
Found at i:51289255 original size:27 final size:27
Alignment explanation
Indices: 51289219--51289285 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
51289209 GTAGTGATTC
* *
51289219 AATTCAGTTAATTCGGTTAATTC-AGGT
1 AATTCGGTTAATTCGGGTAA-TCTAGGT
*
51289246 AATTCGGTTAATTCGGGTAATCTAGTT
1 AATTCGGTTAATTCGGGTAATCTAGGT
*
51289273 AATTCGGGTAATT
1 AATTCGGTTAATT
51289286 TTTCACTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATCTAGGT
Found at i:51291678 original size:31 final size:29
Alignment explanation
Indices: 51291608--51291680 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
51291598 ACTTCAAGTT
* *
51291608 ACATTTTAGTTACTTATGTTTGGAATGTT
1 ACATTTTAGTCACTTATGTTTGGAATGTA
* * *
51291637 ACGTTTTAGTCACTTATGTTATTGTATTGTA
1 ACATTTTAGTCACTTATG-T-TTGGAATGTA
51291668 ACATTTTAGTCAC
1 ACATTTTAGTCAC
51291681 CGAGCCATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 16 0.44
30 1 0.03
31 19 0.53
ACGTcount: A:0.25, C:0.11, G:0.15, T:0.49
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTGGAATGTA
Found at i:51292121 original size:17 final size:16
Alignment explanation
Indices: 51292090--51292130 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
51292080 GAAAAATAAA
*
51292090 TAAAAAAAATGAAAGT
1 TAAAAAAAATAAAAGT
51292106 TAAAATAAAATAAAAG-
1 TAAAA-AAAATAAAAGT
51292122 -AAAAAAAAT
1 TAAAAAAAAT
51292131 TTAATTGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 5 0.22
15 4 0.17
16 5 0.22
17 9 0.39
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (16 bp):
TAAAAAAAATAAAAGT
Found at i:51292134 original size:26 final size:25
Alignment explanation
Indices: 51292082--51292134 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
51292072 AAGAGAATGA
*
51292082 AAAATAAATAAAAAAAATGAAAGTT
1 AAAATAAATAAAAAAAATAAAAGTT
*
51292107 AAAATAAAATAAAAGAAAA-AAAATTT
1 AAAAT-AAATAAAA-AAAATAAAAGTT
51292133 AA
1 AA
51292135 TTGCTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.21
26 15 0.62
27 4 0.17
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (25 bp):
AAAATAAATAAAAAAAATAAAAGTT
Found at i:51292411 original size:16 final size:16
Alignment explanation
Indices: 51292390--51292424 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
51292380 CAAATATATT
51292390 TATTTTTTTGTAAAAA
1 TATTTTTTTGTAAAAA
51292406 TATTTTTTTGTAAAAA
1 TATTTTTTTGTAAAAA
51292422 TAT
1 TAT
51292425 GATTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (16 bp):
TATTTTTTTGTAAAAA
Found at i:51304256 original size:15 final size:15
Alignment explanation
Indices: 51304232--51304261 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51304222 TCCATGTAGT
*
51304232 AGGATTTGATTTATC
1 AGGATATGATTTATC
51304247 AGGATATGATTTATC
1 AGGATATGATTTATC
51304262 CCTCCTACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (15 bp):
AGGATATGATTTATC
Found at i:51307025 original size:38 final size:38
Alignment explanation
Indices: 51306948--51307053 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 38
51306938 ATGGGTAAAA
* *
51306948 AATCTCATTTCTAAATTTATTTGCT-GATATTTTGTTTTT
1 AATCTCATTTCTAAATTTA-TTG-TAAATATTTTATTTTT
*
51306987 AATCTCGTTTCTAAATTTATTGTAAATATTTTATTTTT
1 AATCTCATTTCTAAATTTATTGTAAATATTTTATTTTT
*
51307025 AATCACATTTCT-AATTTA-T-TAAATATTTT
1 AATCTCATTTCTAAATTTATTGTAAATATTTT
51307054 GAAACACTTG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
35 10 0.16
36 1 0.02
37 7 0.11
38 25 0.41
39 18 0.30
ACGTcount: A:0.29, C:0.09, G:0.05, T:0.57
Consensus pattern (38 bp):
AATCTCATTTCTAAATTTATTGTAAATATTTTATTTTT
Found at i:51310217 original size:21 final size:21
Alignment explanation
Indices: 51310193--51310233 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51310183 GGGGTTTGGG
* *
51310193 GTTTGGGGTTAAGGGTTTATA
1 GTTTAGGGTTAAGGATTTATA
*
51310214 GTTTAGGGTTTAGGATTTAT
1 GTTTAGGGTTAAGGATTTAT
51310234 GATTAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTAAGGATTTATA
Found at i:51310403 original size:15 final size:16
Alignment explanation
Indices: 51310371--51310409 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
51310361 GAAATTCTAG
51310371 ATTAATATAAATGAAA
1 ATTAATATAAATGAAA
51310387 A-TAATATAAAT-ATAA
1 ATTAATATAAATGA-AA
51310402 ATTAATAT
1 ATTAATAT
51310410 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.05
15 13 0.62
16 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTAATATAAATGAAA
Found at i:51313396 original size:20 final size:20
Alignment explanation
Indices: 51313368--51313536 Score: 120
Period size: 20 Copynumber: 8.7 Consensus size: 20
51313358 TGGAAATAAC
*
51313368 ATAAAATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
*
51313388 ATAATATTAAGATTACTTAT
1 ATAATATTAAGATAACTTAT
* * *
51313408 ATAGTATTAAGACAAAATT-T
1 ATAATATTAAGA-TAACTTAT
* *
51313428 CT-A-ATT-ACATAACTTAT
1 ATAATATTAAGATAACTTAT
51313445 ATAAATATTAAGATAAACTTAT
1 AT-AATATTAAGAT-AACTTAT
*
51313467 ATAATATTAAGATAAAATT-T
1 ATAATATTAAGAT-AACTTAT
* * *
51313487 CT-A-ATT-ACATAACTTCT
1 ATAATATTAAGATAACTTAT
*
51313504 ATAATATTAAGATAAGTTAT
1 ATAATATTAAGATAACTTAT
* *
51313524 ATTATTTTAAGAT
1 ATAATATTAAGAT
51313537 TAAATTTGGA
Statistics
Matches: 115, Mismatches: 23, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
16 8 0.07
17 9 0.08
18 7 0.06
19 5 0.04
20 55 0.48
21 22 0.19
22 9 0.08
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAATATTAAGATAACTTAT
Found at i:51313477 original size:59 final size:57
Alignment explanation
Indices: 51313379--51313570 Score: 276
Period size: 57 Copynumber: 3.3 Consensus size: 57
51313369 TAAAATTAAG
* * *
51313379 ATAACTTATATAATATTAAGATTACTTATATAGTATTAAGACAAAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTAC
51313436 ATAACTTATATAAATATTAAGATAAACTTATATAATATTAAGATAAAATTTCTAATTAC
1 ATAACTTATAT-AATATTAAGAT-AACTTATATAATATTAAGATAAAATTTCTAATTAC
* * * * * **
51313495 ATAACTTCTATAATATTAAGATAAGTTATATTATTTTAAGATTAAATTTGGAATTAC
1 ATAACTTATATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTAC
51313552 ATAACTTATATAATATTAA
1 ATAACTTATATAATATTAA
51313571 ATTGTAATTT
Statistics
Matches: 122, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
57 58 0.48
58 22 0.18
59 42 0.34
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (57 bp):
ATAACTTATATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTAC
Found at i:51313580 original size:94 final size:91
Alignment explanation
Indices: 51313460--51313698 Score: 265
Period size: 94 Copynumber: 2.6 Consensus size: 91
51313450 TATTAAGATA
* *
51313460 AACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTCTATAATATTAAGATAAGTTATA
1 AACTTATATAATATTAA-AT-TAATTTCTAATTACATAACTT-TATAATATTAAGATAACTTATA
** * * *
51313525 TTATTTTAAGATTAAATTTGGAATTACAT
63 CAATATTAAGATAAAATTTCGAATTACAT
* * *
51313554 AACTTATATAATATTAAATTGTAATTTCTAAGTACACTTAAATTTAT-ATATTTAGATAACTTAT
1 AACTTATATAATATTAAA-T-TAATTTCTAATTACA--TAACTTTATAATATTAAGATAACTTAT
51313618 ACAATATTAAGATAAAATTTCGAATTACAT
62 ACAATATTAAGATAAAATTTCGAATTACAT
*
51313648 AACTTATAT-A-A-T--ATTAATTTCTCATTACATAACTTATATAATATTAAGATA
1 AACTTATATAATATTAAATTAATTTCTAATTACATAACTT-TATAATATTAAGATA
51313699 CAATTTCTAA
Statistics
Matches: 125, Mismatches: 15, Indels: 17
0.80 0.10 0.11
Matches are distributed among these distances:
85 5 0.04
86 3 0.02
87 23 0.18
88 1 0.01
89 1 0.01
91 1 0.01
92 1 0.01
93 2 0.02
94 80 0.64
95 3 0.02
96 5 0.04
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (91 bp):
AACTTATATAATATTAAATTAATTTCTAATTACATAACTTTATAATATTAAGATAACTTATACAA
TATTAAGATAAAATTTCGAATTACAT
Found at i:51313637 original size:57 final size:58
Alignment explanation
Indices: 51313552--51313767 Score: 188
Period size: 57 Copynumber: 3.6 Consensus size: 58
51313542 TTGGAATTAC
** *
51313552 ATAACTTATATAATATTAA-ATTGTAATTTCTAAGTACACT-TAAATTTATATATTTAG
1 ATAACTTATATAATATTAAGA-TAAAATTTCTAATTACACTATAAATTTATATATTTAG
* * * *
51313609 ATAACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAATTTCTCATT
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTAC---AC-TATA-AAT-TT-ATATAT--TT
*
51313674 AC
57 AG
* * * *
51313676 ATAACTTATATAATATTAAGATACAATTTCTAATTACA-TGTCAATTTCTA-ATTTTAG
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTACACTATAAATTTATATA-TTTAG
51313733 ATAACTTATATAATATTAAGATAAAATTTCATAAT
1 ATAACTTATATAATATTAAGATAAAATTTC-TAAT
51313768 ACATAGCTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 25
0.75 0.11 0.15
Matches are distributed among these distances:
57 62 0.48
58 5 0.04
59 2 0.02
60 4 0.03
61 4 0.03
62 4 0.03
63 3 0.02
64 3 0.02
65 4 0.03
67 37 0.29
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (58 bp):
ATAACTTATATAATATTAAGATAAAATTTCTAATTACACTATAAATTTATATATTTAG
Found at i:51313651 original size:37 final size:35
Alignment explanation
Indices: 51313609--51313714 Score: 116
Period size: 37 Copynumber: 3.1 Consensus size: 35
51313599 ATATATTTAG
*
51313609 ATAACTTATACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTAAGAT-AAATTTC-AATTAC
51313646 ATAACTTATATAATATT-A-AT---TTCTC-ATTAC
1 ATAACTTATATAATATTAAGATAAATT-TCAATTAC
51313676 ATAACTTATATAATATTAAGATACAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATA-AATTTC-AATTAC
51313713 AT
1 AT
51313715 GTCAATTTCT
Statistics
Matches: 59, Mismatches: 1, Indels: 18
0.76 0.01 0.23
Matches are distributed among these distances:
30 22 0.37
31 3 0.05
32 4 0.07
35 4 0.07
36 3 0.05
37 23 0.39
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (35 bp):
ATAACTTATATAATATTAAGATAAATTTCAATTAC
Found at i:51313771 original size:124 final size:124
Alignment explanation
Indices: 51313547--51313782 Score: 327
Period size: 124 Copynumber: 1.9 Consensus size: 124
51313537 TAAATTTGGA
**
51313547 ATTACATAACTTATATAATATTAAATTGTAATTTCTAAGTACACTTAAATTTATATATTTAGATA
1 ATTACATAACTTATATAATATTAAATTACAATTTCTAAGTACACTTAAATTTATATATTTAGATA
* *
51313612 ACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAATTTCTC
66 ACTTATACAATATTAAGATAAAATTTCGAAATACATAACTTAAATAATATTAATTTCTC
* * *
51313671 ATTACATAACTTATATAATATTAAGA-TACAATTTCTAATTACA-TGTCAATTTCTA-ATTTTAG
1 ATTACATAACTTATATAATATTAA-ATTACAATTTCTAAGTACACT-TAAATTTATATA-TTTAG
* *
51313733 ATAACTTATATAATATTAAGATAAAATTTC-ATAATACATAGCTTAAATAA
63 ATAACTTATACAATATTAAGATAAAATTTCGA-AATACATAACTTAAATAA
51313783 CTAACATAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
123 3 0.03
124 95 0.96
125 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (124 bp):
ATTACATAACTTATATAATATTAAATTACAATTTCTAAGTACACTTAAATTTATATATTTAGATA
ACTTATACAATATTAAGATAAAATTTCGAAATACATAACTTAAATAATATTAATTTCTC
Found at i:51313820 original size:9 final size:9
Alignment explanation
Indices: 51313804--51314135 Score: 153
Period size: 9 Copynumber: 39.3 Consensus size: 9
51313794 CACAACTTAA
51313804 TACATAACT
1 TACATAACT
*
51313813 TTCATAACT
1 TACATAACT
51313822 TAACATAA--
1 T-ACATAACT
51313830 TACATAACGT
1 TACATAAC-T
51313840 T-CATAACT
1 TACATAACT
*
51313848 TACATTA-T
1 TACATAACT
*
51313856 T-CACAACT
1 TACATAACT
51313864 TACATAA--
1 TACATAACT
*
51313871 TACACAACTT
1 TACATAAC-T
51313881 AATACATAACT
1 --TACATAACT
*
51313892 TTCATAACT
1 TACATAACT
51313901 TAACATAA--
1 T-ACATAACT
51313909 TACATAACT
1 TACATAACT
*
51313918 TTCATAACT
1 TACATAACT
*
51313927 TACAT--TT
1 TACATAACT
* *
51313934 TTCACAACT
1 TACATAACT
*
51313943 TACATAGCT
1 TACATAACT
51313952 T--ATAACT
1 TACATAACT
* *
51313959 GA-ACAACT
1 TACATAACT
*
51313967 TACATAACA
1 TACATAACT
*
51313976 AACATAA--
1 TACATAACT
* *
51313983 TATATAACC
1 TACATAACT
*
51313992 GACATAACT
1 TACATAACT
*
51314001 AACATAA--
1 TACATAACT
*
51314008 TACATAGCT
1 TACATAACT
51314017 TACATAA--
1 TACATAACT
*
51314024 TACACAACT
1 TACATAACT
*
51314033 TACATAGCT
1 TACATAACT
51314042 TACAT-AC-
1 TACATAACT
*
51314049 TAAATAACT
1 TACATAACT
**
51314058 TACATAAAA
1 TACATAACT
51314067 TAC--AACT
1 TACATAACT
*
51314074 TACATAGCT
1 TACATAACT
*
51314083 CACATAA--
1 TACATAACT
*
51314090 TACGTAACT
1 TACATAACT
51314099 TACATAACT
1 TACATAACT
*
51314108 TATATAA--
1 TACATAACT
51314115 TACATAACT
1 TACATAACT
*
51314124 TACATAATT
1 TACATAACT
51314133 TAC
1 TAC
51314136 TTAATACAGA
Statistics
Matches: 236, Mismatches: 54, Indels: 66
0.66 0.15 0.19
Matches are distributed among these distances:
7 66 0.28
8 17 0.07
9 134 0.57
10 11 0.05
11 1 0.00
12 7 0.03
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:51313837 original size:26 final size:26
Alignment explanation
Indices: 51313801--51313928 Score: 159
Period size: 26 Copynumber: 4.9 Consensus size: 26
51313791 ATACACAACT
51313801 TAATACATAACTTTCATAACTTAACA
1 TAATACATAACTTTCATAACTTAACA
*
51313827 TAATACATAACGTTCATAACTT-ACA
1 TAATACATAACTTTCATAACTTAACA
* * * * ** *
51313852 TTATTCACAACTTACATAATACACAACT
1 TAATACATAACTTTCAT-A-ACTTAACA
51313880 TAATACATAACTTTCATAACTTAACA
1 TAATACATAACTTTCATAACTTAACA
51313906 TAATACATAACTTTCATAACTTA
1 TAATACATAACTTTCATAACTTA
51313929 CATTTTTCAC
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
25 15 0.18
26 50 0.60
27 3 0.04
28 15 0.18
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (26 bp):
TAATACATAACTTTCATAACTTAACA
Found at i:51313869 original size:79 final size:79
Alignment explanation
Indices: 51313781--51313948 Score: 309
Period size: 79 Copynumber: 2.1 Consensus size: 79
51313771 TAGCTTAAAT
*
51313781 AACTAACATAATACACAACTTAATACATAACTTTCATAACTTAACATAATACATAACGTTCATAA
1 AACTTACATAATACACAACTTAATACATAACTTTCATAACTTAACATAATACATAACGTTCATAA
51313846 CTTACATTATTCAC
66 CTTACATTATTCAC
*
51313860 AACTTACATAATACACAACTTAATACATAACTTTCATAACTTAACATAATACATAACTTTCATAA
1 AACTTACATAATACACAACTTAATACATAACTTTCATAACTTAACATAATACATAACGTTCATAA
*
51313925 CTTACATTTTTCAC
66 CTTACATTATTCAC
51313939 AACTTACATA
1 AACTTACATA
51313949 GCTTATAACT
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 86 1.00
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (79 bp):
AACTTACATAATACACAACTTAATACATAACTTTCATAACTTAACATAATACATAACGTTCATAA
CTTACATTATTCAC
Found at i:51313876 original size:16 final size:16
Alignment explanation
Indices: 51313844--51313881 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
51313834 TAACGTTCAT
* *
51313844 AACTTACATTATTCAC
1 AACTTACATAATACAC
51313860 AACTTACATAATACAC
1 AACTTACATAATACAC
51313876 AACTTA
1 AACTTA
51313882 ATACATAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (16 bp):
AACTTACATAATACAC
Found at i:51313936 original size:16 final size:16
Alignment explanation
Indices: 51313917--51313947 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51313907 AATACATAAC
*
51313917 TTTCATAACTTACATT
1 TTTCACAACTTACATT
51313933 TTTCACAACTTACAT
1 TTTCACAACTTACAT
51313948 AGCTTATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTCACAACTTACATT
Found at i:51314012 original size:16 final size:16
Alignment explanation
Indices: 51313993--51314131 Score: 71
Period size: 16 Copynumber: 9.0 Consensus size: 16
51313983 TATATAACCG
*
51313993 ACATAACTAACATAAT
1 ACATAACTTACATAAT
*
51314009 ACATAGCTTACATAAT
1 ACATAACTTACATAAT
*
51314025 AC---AC-AAC-T--T
1 ACATAACTTACATAAT
* *
51314034 ACATAGCTTACATACT
1 ACATAACTTACATAAT
* *
51314050 AAATAACTTACATAAA
1 ACATAACTTACATAAT
* * *
51314066 ATACAACTTACATAGCT
1 ACATAACTTACATA-AT
*
51314083 CACATAA--TACGTAACTT
1 -ACATAACTTACATAA--T
*
51314100 ACATAACTTATATAAT
1 ACATAACTTACATAAT
51314116 ACATAACTTACATAAT
1 ACATAACTTACATAAT
51314132 TTACTTAATA
Statistics
Matches: 89, Mismatches: 21, Indels: 26
0.65 0.15 0.19
Matches are distributed among these distances:
9 3 0.03
11 1 0.01
12 3 0.03
13 3 0.03
14 1 0.01
16 68 0.76
17 1 0.01
18 9 0.10
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.29
Consensus pattern (16 bp):
ACATAACTTACATAAT
Found at i:51314022 original size:41 final size:41
Alignment explanation
Indices: 51313967--51314131 Score: 154
Period size: 41 Copynumber: 4.0 Consensus size: 41
51313957 CTGAACAACT
** * ** *
51313967 TACATAACAAACATAATATATAACCGACATAACTAACATAA
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* * * *
51314008 TACATAGCTTACATAATACACAACTTACATAGCTTACATAC
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* * * *
51314049 TAAATAACTTACATAAAATACAACTTACATAGCTCACATAA
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* *
51314090 TACGTAACTTACATAACTTATATAA--TACATAACTTACATAA
1 TACATAACTTACATAA--TATACAACTTACATAACTTACATAA
51314131 T
1 T
51314132 TTACTTAATA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
41 95 0.95
43 5 0.05
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.28
Consensus pattern (41 bp):
TACATAACTTACATAATATACAACTTACATAACTTACATAA
Found at i:51314057 original size:25 final size:25
Alignment explanation
Indices: 51314008--51314063 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
51313998 ACTAACATAA
*
51314008 TACATAGCTTACATAATACACAACT
1 TACATAGCTTACATAATAAACAACT
* *
51314033 TACATAGCTTACATACTAAATAACT
1 TACATAGCTTACATAATAAACAACT
51314058 TACATA
1 TACATA
51314064 AAATACAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (25 bp):
TACATAGCTTACATAATAAACAACT
Found at i:51314140 original size:25 final size:25
Alignment explanation
Indices: 51314052--51314143 Score: 87
Period size: 25 Copynumber: 3.7 Consensus size: 25
51314042 TACATACTAA
* * * *
51314052 ATAACTTACATAAAATACAACTTAC
1 ATAACTTATATAATACATAACTTAC
* * * *
51314077 ATAGCTCACATAATACGTAACTTAC
1 ATAACTTATATAATACATAACTTAC
51314102 ATAACTTATATAATACATAACTTAC
1 ATAACTTATATAATACATAACTTAC
*
51314127 ATAATTTACT-TAATACA
1 ATAACTTA-TATAATACA
51314144 GAAATATATA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 54 0.98
26 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (25 bp):
ATAACTTATATAATACATAACTTAC
Found at i:51317060 original size:43 final size:42
Alignment explanation
Indices: 51316998--51317310 Score: 389
Period size: 43 Copynumber: 7.3 Consensus size: 42
51316988 TATGCCAAAA
*
51316998 TTAGCGGCGTTTGTGGGAGAAGCGCCACTAACGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCACTAAAGGTCTTGGTCT
* * *
51317041 TTAGCGGCATTTGTAGGAGAAGCGCCTCTAAAGGTCTTGGTTT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCACTAAAGGTCTTGGTCT
** * *
51317084 TTAGCGGCGTTTGTAAAAGAAGCACCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCACTAAAGGTCTTGGTCT
*
51317127 TTAGCGGCGTTTGTGGGAGAAGCG-TAGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCA-CTAAAGGTCTTGGTCT
* *
51317170 TTAGCGGCGTTTGTGGA-ATTAGCACCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGGAGA--AGCGCCACTAAAGGTCTTGGTCT
51317213 TTAGCGGCGTTTGTGTG-GAAAGCGCCACTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTG-GAG-AAGCGCCACTAAAGGTCTTGGTCT
* * *
51317256 TTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGATCT
1 TTAGCGGCGTTTGTG-GAGAAGCGCCACTAAAGGTCTTGGTCT
51317299 TTAGCGGCGTTT
1 TTAGCGGCGTTT
51317311 TTTTGTGGAA
Statistics
Matches: 237, Mismatches: 25, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.00
42 3 0.01
43 231 0.97
44 1 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (42 bp):
TTAGCGGCGTTTGTGGAGAAGCGCCACTAAAGGTCTTGGTCT
Found at i:51317146 original size:86 final size:86
Alignment explanation
Indices: 51316998--51317310 Score: 443
Period size: 86 Copynumber: 3.6 Consensus size: 86
51316988 TATGCCAAAA
* * * * * *
51316998 TTAGCGGCGTTTGTGGGAGAAGCGCCACTAACGGTCTTGGTCTTTAGCGGCATTTGTAGGAGAAG
1 TTAGCGGCGTTTGTGGAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAG
* *
51317063 CGCCTCTAAAGGTCTTGGTTT
66 CGCCACTAAAGGTCTTGGTCT
**
51317084 TTAGCGGCGTTTGTAAAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAG
1 TTAGCGGCGTTTGTGGAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAG
*
51317149 CG-TAGCTAAAGGTCTTGGTCT
66 CGCCA-CTAAAGGTCTTGGTCT
**
51317170 TTAGCGGCGTTTGTGGAATTAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGTGGA-AA
1 TTAGCGGCGTTTGTGGAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTG-GGAGAA
51317234 GCGCCACTAAAGGTCTTGGTCT
65 GCGCCACTAAAGGTCTTGGTCT
* *
51317256 TTAGCGGCGTTTGTGTGAA-AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTT
1 TTAGCGGCGTTTGTG-GAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
51317311 TTTTGTGGAA
Statistics
Matches: 204, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
86 197 0.97
87 7 0.03
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (86 bp):
TTAGCGGCGTTTGTGGAAGAAGCACCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAG
CGCCACTAAAGGTCTTGGTCT
Found at i:51320390 original size:3 final size:3
Alignment explanation
Indices: 51320384--51320430 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
51320374 ATTTCAAAAA
51320384 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
51320431 ATTCTCGCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51322727 original size:14 final size:14
Alignment explanation
Indices: 51322710--51322740 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51322700 ACATAAGCAG
51322710 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
51322724 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
51322738 TCA
1 TCA
51322741 AAGCATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (14 bp):
TCACTAAGGTTCAC
Found at i:51324017 original size:6 final size:6
Alignment explanation
Indices: 51324005--51324061 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
51323995 TGAAAAATAA
* * * *
51324005 AAAAAT AACAAT AAAAAT AAAAGT ACAAAT AAAAA- AAACAT AAAACAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT
*
51324053 AAAACT AAA
1 AAAAAT AAA
51324062 TAAATTCACT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
5 4 0.10
6 30 0.75
7 6 0.15
ACGTcount: A:0.75, C:0.09, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:51332765 original size:21 final size:21
Alignment explanation
Indices: 51332727--51332805 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
51332717 TTTTTTTGTT
* *
51332727 ATTATTCTTATTCTTGTTATG
1 ATTATTTTTATTATTGTTATG
* *
51332748 ATTATTTTTATTAGTGTTATC
1 ATTATTTTTATTATTGTTATG
* *
51332769 ATTCTTTGCACTATTATTGTTATTG
1 ATTATTT---TTATTATTGTTA-TG
51332794 ATTATTTTTATT
1 ATTATTTTTATT
51332806 TTATTTTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
21 23 0.52
22 4 0.09
24 10 0.23
25 7 0.16
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.62
Consensus pattern (21 bp):
ATTATTTTTATTATTGTTATG
Found at i:51340923 original size:20 final size:20
Alignment explanation
Indices: 51340885--51340923 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51340875 GCTACTCATA
*
51340885 TTTTTAAAAACTTATCAGAG
1 TTTTTAAAAACATATCAGAG
51340905 TTTTTAAAACACATA-CAGA
1 TTTTTAAAA-ACATATCAGA
51340924 ATCGGTGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (20 bp):
TTTTTAAAAACATATCAGAG
Found at i:51344232 original size:19 final size:19
Alignment explanation
Indices: 51344198--51344238 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
51344188 TCAGTTTCAG
51344198 TTTCATTTTTAATTTTCTT
1 TTTCATTTTTAATTTTCTT
51344217 TTTC-TTTTTAATTTTTCTT
1 TTTCATTTTTAA-TTTTCTT
51344236 TTT
1 TTT
51344239 TTAGTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCATTTTTAATTTTCTT
Found at i:51344275 original size:29 final size:29
Alignment explanation
Indices: 51344217--51344282 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
51344207 TAATTTTCTT
* *
51344217 TTTCTTTTTAATTTTTCTTTTTTTAGTTA
1 TTTCGTTTTAATTTTTATTTTTTTAGTTA
51344246 TTT-GTTTT-ATTTTTATTTTTTTAGACTTA
1 TTTCGTTTTAATTTTTATTTTTTTAG--TTA
51344275 TTTCGTTT
1 TTTCGTTT
51344283 ATTATCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 15 0.47
28 4 0.12
29 9 0.28
30 4 0.12
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (29 bp):
TTTCGTTTTAATTTTTATTTTTTTAGTTA
Found at i:51352235 original size:27 final size:27
Alignment explanation
Indices: 51352205--51352270 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
51352195 CCTCACGTGG
51352205 TAAAATGACTGTTATACCCCTATGCTA
1 TAAAATGACTGTTATACCCCTATGCTA
* * *
51352232 TAAAATGACTATTATTCCCCTATGTTA
1 TAAAATGACTGTTATACCCCTATGCTA
51352259 TAAAATGACTGT
1 TAAAATGACTGT
51352271 ATGATTTATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (27 bp):
TAAAATGACTGTTATACCCCTATGCTA
Found at i:51352594 original size:34 final size:32
Alignment explanation
Indices: 51352551--51352614 Score: 110
Period size: 34 Copynumber: 1.9 Consensus size: 32
51352541 TGTTACTATC
51352551 ACTATAATGGGCTAAGGCCCACACTGATACTGAT
1 ACTATAATGGGCTAAGGCCCA-ACTGA-ACTGAT
51352585 ACTATAATGGGCTAAGGCCCAACTGAACTG
1 ACTATAATGGGCTAAGGCCCAACTGAACTG
51352615 GACTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 4 0.13
33 5 0.17
34 21 0.70
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (32 bp):
ACTATAATGGGCTAAGGCCCAACTGAACTGAT
Found at i:51359712 original size:27 final size:27
Alignment explanation
Indices: 51359679--51359855 Score: 254
Period size: 27 Copynumber: 6.6 Consensus size: 27
51359669 CCCTAAACTA
*
51359679 TTATAAAATGACTGTTATG-CCCTCACG
1 TTATAAAATGACTGTTATGCCCCT-ATG
*
51359706 -TAGTAAAATGACTGTTATG-CCCTCACG
1 TTA-TAAAATGACTGTTATGCCCCT-ATG
51359733 -TAGTAAAATGACTGTTATGCCCCTATG
1 TTA-TAAAATGACTGTTATGCCCCTATG
* *
51359760 CTATAAAATGACTGTTAAGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
51359787 TTATAAAATGACTGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
51359814 TTATAAAATGACTGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
51359841 TTATAAAATGACTGT
1 TTATAAAATGACTGT
51359856 ATGATTTATG
Statistics
Matches: 143, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.94
28 6 0.04
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (27 bp):
TTATAAAATGACTGTTATGCCCCTATG
Found at i:51362118 original size:24 final size:26
Alignment explanation
Indices: 51362085--51362137 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
51362075 TTTAATTATA
51362085 ATTTAATATAAACACAT-ATAATATT
1 ATTTAATATAAACACATAATAATATT
*
51362110 ATTT-ATATAAACATATAAATAATATT
1 ATTTAATATAAACACAT-AATAATATT
51362136 AT
1 AT
51362138 ACTTTTTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 11 0.44
25 4 0.16
26 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTTAATATAAACACATAATAATATT
Found at i:51364182 original size:353 final size:353
Alignment explanation
Indices: 51363536--51364241 Score: 1394
Period size: 353 Copynumber: 2.0 Consensus size: 353
51363526 ATTTTTCTTT
*
51363536 TTATGATTACTATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
1 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
51363601 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
66 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
51363666 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
131 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
51363731 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
196 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
51363796 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
261 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
*
51363861 TCGTGCCATCCCTCAGAATTGGATCTAC
326 TCGAGCCATCCCTCAGAATTGGATCTAC
51363889 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
1 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
51363954 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
66 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
51364019 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
131 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
51364084 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
196 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
51364149 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
261 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
51364214 TCGAGCCATCCCTCAGAATTGGATCTAC
326 TCGAGCCATCCCTCAGAATTGGATCTAC
51364242 AACTTCCAAA
Statistics
Matches: 351, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
353 351 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (353 bp):
TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
TCGAGCCATCCCTCAGAATTGGATCTAC
Found at i:51367183 original size:8 final size:9
Alignment explanation
Indices: 51367170--51367266 Score: 61
Period size: 9 Copynumber: 10.2 Consensus size: 9
51367160 ATAATAAATA
51367170 TTTTT-ATT
1 TTTTTAATT
51367178 TTTTTAATT
1 TTTTTAATT
51367187 TTTTTAATT
1 TTTTTAATT
***
51367196 TTAAAATATAT
1 TTTTTA-AT-T
*
51367207 TTTTTAAAT
1 TTTTTAATT
*
51367216 TTTTTAAAT
1 TTTTTAATT
**
51367225 TTTAAAATT
1 TTTTTAATT
*
51367234 TTTTTAAAATAA
1 TTTTT--AAT-T
51367246 TTTTTAATT
1 TTTTTAATT
51367255 TTTTTAAATT
1 TTTTT-AATT
51367265 TT
1 TT
51367267 AAAATATTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
8 5 0.07
9 39 0.57
10 12 0.18
11 7 0.10
12 5 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTAATT
Found at i:51367210 original size:30 final size:30
Alignment explanation
Indices: 51367174--51367257 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
51367164 TAAATATTTT
* *
51367174 TATTTTTTTAATTTTTTTAATTTTAAAATA
1 TATTTTTTAAATTTTTTAAATTTTAAAATA
51367204 TATTTTTTAAATTTTTTAAATTTTAAAAT-
1 TATTTTTTAAATTTTTTAAATTTTAAAATA
* *
51367233 T-TTTTTAAAATAATTTTTAATTTTT
1 TATTTTTTAAAT--TTTTTAAATTTT
51367258 TTAAATTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.19
29 1 0.02
30 38 0.79
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (30 bp):
TATTTTTTAAATTTTTTAAATTTTAAAATA
Found at i:51367219 original size:29 final size:27
Alignment explanation
Indices: 51367176--51367256 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 27
51367166 AATATTTTTA
*
51367176 TTTTTTTAATTTTTTTAATTTTAAAAT
1 TTTTTTTAAATTTTTTAATTTTAAAAT
51367203 ATATTTTTTAAATTTTTTAAATTTTAAAAT
1 -T-TTTTTTAAATTTTTT-AATTTTAAAAT
*
51367233 TTTTTTAAAATAATTTTTAATTTT
1 TTTTTTTAAAT--TTTTTAATTTT
51367257 TTTAAATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
28 10 0.21
29 21 0.45
30 16 0.34
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTTTAAATTTTTTAATTTTAAAAT
Found at i:51367251 original size:12 final size:11
Alignment explanation
Indices: 51367224--51367289 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
51367214 ATTTTTTAAA
*
51367224 TTTTAAAATTT
1 TTTTAAAATAT
51367235 TTTTAAAATAAT
1 TTTTAAAAT-AT
51367247 TTTT--AAT-T
1 TTTTAAAATAT
*
51367255 TTTT-TAA-A-
1 TTTTAAAATAT
51367263 TTTTAAAATAT
1 TTTTAAAATAT
51367274 TTTTAAAATACT
1 TTTTAAAATA-T
51367286 TTTT
1 TTTT
51367290 TTAATTTTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
8 9 0.20
9 4 0.09
10 4 0.09
11 19 0.41
12 10 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:51367268 original size:39 final size:40
Alignment explanation
Indices: 51367194--51367298 Score: 158
Period size: 39 Copynumber: 2.6 Consensus size: 40
51367184 ATTTTTTTAA
* *
51367194 TTTTAAAATATATTTTTTAAATTTTTTAAATTTTAAAATTT
1 TTTTAAAATATA-TTTTTAATTTTTTTAAATTTTAAAATAT
51367235 TTTTAAAATA-ATTTTTAATTTTTTTAAATTTTAAAATAT
1 TTTTAAAATATATTTTTAATTTTTTTAAATTTTAAAATAT
*
51367274 TTTTAAAATACTTTTTTTAATTTTT
1 TTTTAAAATA-TATTTTTAATTTTT
51367299 GTTTTAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
39 36 0.61
40 1 0.02
41 22 0.37
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (40 bp):
TTTTAAAATATATTTTTAATTTTTTTAAATTTTAAAATAT
Found at i:51367276 original size:41 final size:38
Alignment explanation
Indices: 51367167--51367298 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 38
51367157 AATATAATAA
* **
51367167 ATATTTTT-ATTTTTTTAATTTTTTTAA-TTTTAAAAT
1 ATATTTTTAATTTTTTTAAATTTTAAAATTTTTAAAAT
*
51367203 ATATTTTTTAAATTTTTTAAATTTTAAAATTTTTTTAAAAT
1 ATA-TTTTTAATTTTTTTAAATTTTAAAA--TTTTTAAAAT
51367244 A-ATTTTTAATTTTTTTAAATTTTAAAATATTTTTAAAAT
1 ATATTTTTAATTTTTTTAAATTTT-AAA-ATTTTTAAAAT
*
51367283 ACTTTTTTTAATTTTT
1 A-TATTTTTAATTTTT
51367299 GTTTTAATTT
Statistics
Matches: 81, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
36 3 0.04
37 5 0.06
38 15 0.19
39 31 0.38
40 4 0.05
41 23 0.28
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (38 bp):
ATATTTTTAATTTTTTTAAATTTTAAAATTTTTAAAAT
Found at i:51367801 original size:48 final size:49
Alignment explanation
Indices: 51367708--51367806 Score: 157
Period size: 49 Copynumber: 2.0 Consensus size: 49
51367698 CTTTTTTTGG
*
51367708 AGGCACCAACTTTCAATGAATTATTTTTTAGTGTTAATTCTAGATGTGA
1 AGGCACCAACTTTCAATGAATTATCTTTTAGTGTTAATTCTAGATGTGA
*
51367757 AGGCACCAACTTTCAATGGATTA-CTTTTAGTGTTAACTT-TAGATGTGA
1 AGGCACCAACTTTCAATGAATTATCTTTTAGTGTTAA-TTCTAGATGTGA
51367805 AG
1 AG
51367807 ACACTAATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 23 0.49
49 24 0.51
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (49 bp):
AGGCACCAACTTTCAATGAATTATCTTTTAGTGTTAATTCTAGATGTGA
Found at i:51370377 original size:26 final size:27
Alignment explanation
Indices: 51370325--51370405 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
51370315 AGACTATCCA
*
51370325 TTCATAATTCACCATAAAAGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
*
51370352 TTCATGATTCACCAC-AAAGAC-TTTCTT
1 TTCATAATTCACCACAAAAG-CTTTTC-T
* * * *
51370379 TTCATATTTCGCTACAAAGGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
51370406 CTTGTATTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
26 8 0.19
27 28 0.65
28 7 0.16
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TTCATAATTCACCACAAAAGCTTTTCT
Found at i:51370440 original size:27 final size:26
Alignment explanation
Indices: 51370364--51370442 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
51370354 CATGATTCAC
* *
51370364 CACAAAGACTTTCTTTTCATATTTCG
1 CACAAAGGCTTTCCTTTCATATTTCG
* * *
51370390 CTACAAAGGCTTTTCTCTT-GTATTTTG
1 C-ACAAAGGCTTTCCT-TTCATATTTCG
51370417 TCACAAAGGCTTTCCTTTCATATTTC
1 -CACAAAGGCTTTCCTTTCATATTTC
51370443 ACCAAAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
26 3 0.07
27 35 0.85
28 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (26 bp):
CACAAAGGCTTTCCTTTCATATTTCG
Found at i:51371210 original size:15 final size:16
Alignment explanation
Indices: 51371190--51371219 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51371180 GTCCCATAAA
51371190 TTAAAAAT-ATATATC
1 TTAAAAATAATATATC
51371205 TTAAAAATAATATAT
1 TTAAAAATAATATAT
51371220 ATATATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAAATAATATATC
Found at i:51371948 original size:30 final size:30
Alignment explanation
Indices: 51371876--51371948 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
51371866 TGCAACTAAG
* **
51371876 TTAGGGGCTTAATTAAATTTTTTAAAAATT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
** * * *
51371906 TTAATGGTTTAATTAAAATCCTTAGAACTT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
51371936 TTAGGGGCTTAAT
1 TTAGGGGCTTAAT
51371949 GAGGATCTCC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (30 bp):
TTAGGGGCTTAATTAAAATCCTTAAAAATT
Found at i:51375545 original size:20 final size:20
Alignment explanation
Indices: 51375520--51375560 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
51375510 GTATTTAGCA
*
51375520 AAGTTACGGTTTTCCAACAC
1 AAGTTACGGTTTTCAAACAC
*
51375540 AAGTTATGGTTTTCAAACAC
1 AAGTTACGGTTTTCAAACAC
51375560 A
1 A
51375561 CTACCATGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (20 bp):
AAGTTACGGTTTTCAAACAC
Found at i:51378436 original size:34 final size:34
Alignment explanation
Indices: 51378393--51378486 Score: 131
Period size: 34 Copynumber: 2.8 Consensus size: 34
51378383 ATTTAAAAAA
*
51378393 TAATTAAATTAAGTTTTAGAGGTTTTAAGTAAA-T
1 TAATTAAATTAAGGTTTAGAGGTTTTAAG-AAAGT
*
51378427 TAATTAAATTAAGGTTTAGAGTTTTTAAGAAAGT
1 TAATTAAATTAAGGTTTAGAGGTTTTAAGAAAGT
*
51378461 TAATTAAATTAGGGTTT--AGGTTTTAA
1 TAATTAAATTAAGGTTTAGAGGTTTTAA
51378487 AAAAATAATT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
32 8 0.15
33 3 0.05
34 44 0.80
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (34 bp):
TAATTAAATTAAGGTTTAGAGGTTTTAAGAAAGT
Found at i:51378805 original size:126 final size:126
Alignment explanation
Indices: 51378580--51378972 Score: 504
Period size: 126 Copynumber: 3.1 Consensus size: 126
51378570 GGATTTTATT
* * * * *
51378580 TTTTTCTACACTAGTT-TCTGAAAAATTAATTTTGAGAAGATGGTTATGAAAAGATAATGTCAAA
1 TTTTTCTACACTAGTTCT-TGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAA
* * * *
51378644 AACGCTTCAAACAGGATGTACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * *
51378706 TTTTTCTACATTAATTCTTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTTAAAA
1 TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
* * * *
51378771 ATGCTTCAAGCAGGATACATTGTCAACAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * * * *
51378832 TTTTT-TACAGTAGTTCTTGAAAAAATAATTTTGCGAAGACGGTTTTGAAAAACTAGTG-TCAAA
1 TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
* * * *
51378895 ACGCTTCAAGCAGGAGGCACTATCAGCAACATTACTGAAAAAATCTCCCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * *
51378956 CTTTTCTATAGTAGTTC
1 TTTTTCTACACTAGTTC
51378973 CTGCTTGGCC
Statistics
Matches: 233, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
124 61 0.26
125 58 0.25
126 113 0.48
127 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (126 bp):
TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
Found at i:51382515 original size:18 final size:18
Alignment explanation
Indices: 51382489--51382538 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
51382479 GACTAGAAAA
*
51382489 AGGAAACATATAAGAGTT
1 AGGATACATATAAGAGTT
51382507 AGGATACATATAAGAGTT
1 AGGATACATATAAGAGTT
51382525 AGGATACATATAAG
1 AGGATACATATAAG
51382539 TTTTGGAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.24
Consensus pattern (18 bp):
AGGATACATATAAGAGTT
Found at i:51385690 original size:20 final size:21
Alignment explanation
Indices: 51385662--51385700 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
51385652 ATTAATTAAA
*
51385662 ATTACATAA-ATGAAAAAAAT
1 ATTAAATAATATGAAAAAAAT
*
51385682 ATTAAATAATATTAAAAAA
1 ATTAAATAATATGAAAAAA
51385701 TTGAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
ATTAAATAATATGAAAAAAAT
Found at i:51385706 original size:30 final size:31
Alignment explanation
Indices: 51385632--51385706 Score: 73
Period size: 30 Copynumber: 2.4 Consensus size: 31
51385622 CAATCTATTA
* *
51385632 TAAAAAATTCTAAAATAAAAATTAATTAAAAT
1 TAAAAAATT-GAAAATAAAAATTAAATAAAAT
* * *
51385664 TACATAAA-TGAAAA-AAATATTAAATAATAT
1 TA-AAAAATTGAAAATAAAAATTAAATAAAAT
51385694 TAAAAAATTGAAA
1 TAAAAAATTGAAA
51385707 TTAACCCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
29 4 0.11
30 20 0.57
31 4 0.11
32 3 0.09
33 4 0.11
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (31 bp):
TAAAAAATTGAAAATAAAAATTAAATAAAAT
Found at i:51387315 original size:26 final size:26
Alignment explanation
Indices: 51387244--51387315 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 26
51387234 ATGTTCGTAT
*
51387244 AAAAGAAATTATAATT-TGAATAAATTG
1 AAAATAAA-TATAATTAT-AATAAATTG
* *
51387271 AAAATAAATATTATATATAATAATTTG
1 AAAATAAATATAAT-TATAATAAATTG
51387298 -AAATAAATCATAATTATA
1 AAAATAAAT-ATAATTATA
51387316 GTTAAAAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 17 0.45
27 20 0.53
28 1 0.03
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (26 bp):
AAAATAAATATAATTATAATAAATTG
Found at i:51388212 original size:6 final size:7
Alignment explanation
Indices: 51388197--51388221 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51388187 ACCTAAACAG
51388197 AAAAGAA
1 AAAAGAA
51388204 AAAAGAA
1 AAAAGAA
51388211 AAAAGAA
1 AAAAGAA
51388218 AAAA
1 AAAA
51388222 AACCTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:51389364 original size:16 final size:16
Alignment explanation
Indices: 51389345--51389380 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
51389335 TAAAATCTAT
*
51389345 ATAAATATTTAATTAA
1 ATAAAAATTTAATTAA
*
51389361 ATAAAAATTTAATTAG
1 ATAAAAATTTAATTAA
51389377 ATAA
1 ATAA
51389381 TGTATCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATAAAAATTTAATTAA
Found at i:51389948 original size:21 final size:22
Alignment explanation
Indices: 51389907--51389949 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
51389897 AAAATGTTAC
51389907 TAAATTTATCATAAAAAAATTA
1 TAAATTTATCATAAAAAAATTA
51389929 TAAATTT-T-ATAAAAACAATTA
1 TAAATTTATCATAAAAA-AATTA
51389950 AATTAAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 6 0.30
22 7 0.35
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
TAAATTTATCATAAAAAAATTA
Found at i:51395369 original size:38 final size:38
Alignment explanation
Indices: 51395291--51395371 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
51395281 TGAAAAATGT
* * *
51395291 CAAAAATCATAATTAACCCCAGTGCCAATGGGTCGAAA
1 CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
* * * *
51395329 CAAAAACCACAATTAACCCCAATGGCAATTGGTTGGAA
1 CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
51395367 CAAAA
1 CAAAA
51395372 TTATTAAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.17
Consensus pattern (38 bp):
CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
Found at i:51395683 original size:339 final size:338
Alignment explanation
Indices: 51395025--51395858 Score: 1266
Period size: 339 Copynumber: 2.4 Consensus size: 338
51395015 AAAACCTGTA
*
51395025 AAAATATTAAAAAGATGGAGTGAGTTTAACTACACAGTAAGTAACTAGCATTTCCCTTGGTTGGG
1 AAAATATT-AAAAGATGGAGTGAGTTTAACTA-ACAG-AAGTAACTAGCATTTCCCTTGGTTGAG
* *
51395090 TTAAGCAAGCACAAAAGCATTTAAGCTAAATATCTAGTAAAAAATCCATAATTTTAAAATTTATG
63 TTAAGCAAGCACAAAAGCATTTAGGCTAAATAT-TAGTAAAAAATCCATAATTGTAAAATTTATG
51395155 ATTATACCCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAAT
127 ATTATA-CCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAAT
* *
51395220 AATTTTTGAAATACTGATAGATAAAAAAATAACAACTCCATTTTTTCTCCCTTAACCTCGATGAA
191 AATTTTTGAAATACTAATAGATAAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAA
* * * *
51395285 AAATGTCAAAAATCATAATTAACCCCAGTGCCAATGGGTCGAAACAAAAACCACAATTAACCCCA
256 AAATATCAAAAACCATAATTAACCCCAGTGCCAATGAGTCAAAACAAAAACCACAATTAACCCCA
*
51395350 ATGGCAATTGGTTGGAAC
321 ATGACAATTGGTTGGAAC
* *
51395368 AAAATTATTAAAAGATAGAGTGAGTTTAACT-ACA-AAGTAACTAGCATTTCCCTTAGTTGAGTT
1 AAAA-TATTAAAAGATGGAGTGAGTTTAACTAACAGAAGTAACTAGCATTTCCCTTGGTTGAGTT
* *
51395431 AAGCAAGCACAAAAGAATTTAGGCTAAATACTTAGTAAAAAATCCATAGTTGTAAAATTTATGAT
65 AAGCAAGCACAAAAGCATTTAGGCTAAATA-TTAGTAAAAAATCCATAATTGTAAAATTTATGAT
* *
51395496 TATACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGATAATTCAATAAT
129 TATACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAATAAT
* * *
51395561 TTCTT-AAATACTAATAGATAAAAAAAATAACAACTCCCTTTTTTATCCTTTAACCTCGATGATA
194 TT-TTGAAATACTAATAGAT-AAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAAA
* *
51395625 AATATCAAAAACCATAATTAACCCTAGTGGCAATGAGTCAAAACAAAAACCACAATTAACCCCAA
257 AATATCAAAAACCATAATTAACCCCAGTGCCAATGAGTCAAAACAAAAACCACAATTAACCCCAA
51395690 TGACAATTGGTTGGAAC
322 TGACAATTGGTTGGAAC
* * * * * *
51395707 AAGAATGTTAAAAGATGGAGTTAGTTTTACTACACAGTAAGTAACTAGAATTTCCTTTGGTTTAG
1 AA-AATATTAAAAGATGGAGTGAGTTTAACTA-ACAG-AAGTAACTAGCATTTCCCTTGGTTGAG
51395772 TTAAGCAAGCACAAAAGCA--TAGGCTAAATATTTAG-AAAAAATCCATAATTGTAAAATTTATG
63 TTAAGCAAGCACAAAAGCATTTAGGCTAAATA-TTAGTAAAAAATCCATAATTGTAAAATTTATG
51395834 ATTATACCACAATAAATAATTCAAA
127 ATTATACCACAATAAATAATTCAAA
51395859 TTGTAACACC
Statistics
Matches: 450, Mismatches: 32, Indels: 21
0.89 0.06 0.04
Matches are distributed among these distances:
338 74 0.16
339 231 0.51
340 54 0.12
341 21 0.05
343 66 0.15
344 4 0.01
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.29
Consensus pattern (338 bp):
AAAATATTAAAAGATGGAGTGAGTTTAACTAACAGAAGTAACTAGCATTTCCCTTGGTTGAGTTA
AGCAAGCACAAAAGCATTTAGGCTAAATATTAGTAAAAAATCCATAATTGTAAAATTTATGATTA
TACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAATAATTT
TTGAAATACTAATAGATAAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAAAAATA
TCAAAAACCATAATTAACCCCAGTGCCAATGAGTCAAAACAAAAACCACAATTAACCCCAATGAC
AATTGGTTGGAAC
Found at i:51397240 original size:27 final size:27
Alignment explanation
Indices: 51397210--51397387 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51397200 ATATTGAGTC
* * * *
51397210 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51397237 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51397264 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51397292 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51397319 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51397346 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51397373 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51397388 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51397349 original size:82 final size:81
Alignment explanation
Indices: 51397231--51397386 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51397221 TGCTATATAA
* *
51397231 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51397296 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51397313 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51397377 CACTTAGTGC
65 CACTTAGTGC
51397387 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51405207 original size:27 final size:27
Alignment explanation
Indices: 51405177--51405354 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51405167 ATATTGAGTC
* * * *
51405177 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51405204 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51405231 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51405259 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51405286 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51405313 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51405340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51405355 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51405316 original size:82 final size:81
Alignment explanation
Indices: 51405198--51405353 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51405188 TGCTATATAA
* *
51405198 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51405263 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51405280 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51405344 CACTTAGTGC
65 CACTTAGTGC
51405354 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51413137 original size:27 final size:27
Alignment explanation
Indices: 51413107--51413284 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51413097 ATATTGAGTC
* * * *
51413107 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51413134 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51413161 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51413189 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51413216 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51413243 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51413270 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51413285 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51413246 original size:82 final size:81
Alignment explanation
Indices: 51413128--51413283 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51413118 TGCTATATAA
* *
51413128 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51413193 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51413210 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51413274 CACTTAGTGC
65 CACTTAGTGC
51413284 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51425181 original size:28 final size:28
Alignment explanation
Indices: 51425122--51425181 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
51425112 CGGGTTGGCG
* * *
51425122 TGTGTTAGGCCGTGGGGCCACACGAGCG
1 TGTGTTAGGCCATAGGGCCACACGAGCA
*
51425150 TGTGTTAGGCCATAGGGCTACA-GTAGCA
1 TGTGTTAGGCCATAGGGCCACACG-AGCA
51425178 TGTG
1 TGTG
51425182 GGCTCATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.18, C:0.20, G:0.38, T:0.23
Consensus pattern (28 bp):
TGTGTTAGGCCATAGGGCCACACGAGCA
Found at i:51428760 original size:14 final size:14
Alignment explanation
Indices: 51428736--51428800 Score: 85
Period size: 14 Copynumber: 4.4 Consensus size: 14
51428726 TTCAAGTATT
*
51428736 TAAAGATGAAAATAA
1 TAAA-ATGAAAATAG
51428751 TAAAATGAAAATAG
1 TAAAATGAAAATAG
*
51428765 TAAAATAATAAAATAG
1 TAAAAT--GAAAATAG
51428781 TAAAATGAAAATAG
1 TAAAATGAAAATAG
51428795 TAAAAT
1 TAAAAT
51428801 AATTGAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
14 28 0.62
15 4 0.09
16 13 0.29
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (14 bp):
TAAAATGAAAATAG
Found at i:51428769 original size:8 final size:8
Alignment explanation
Indices: 51428744--51428801 Score: 70
Period size: 8 Copynumber: 7.8 Consensus size: 8
51428734 TTTAAAGATG
*
51428744 AAAATAAT
1 AAAATAGT
51428752 AAAAT-G-
1 AAAATAGT
51428758 AAAATAGT
1 AAAATAGT
*
51428766 AAAATAAT
1 AAAATAGT
51428774 AAAATAGT
1 AAAATAGT
51428782 AAAAT-G-
1 AAAATAGT
51428788 AAAATAGT
1 AAAATAGT
51428796 AAAATA
1 AAAATA
51428802 ATTGAATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
6 10 0.23
7 3 0.07
8 30 0.70
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (8 bp):
AAAATAGT
Found at i:51428769 original size:22 final size:22
Alignment explanation
Indices: 51428736--51428801 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
51428726 TTCAAGTATT
51428736 TAAAGATGAAAATAATAAAAT-G
1 TAAA-ATGAAAATAATAAAATAG
51428758 -AAAATAGTAAAATAATAAAATAG
1 TAAAAT-G-AAAATAATAAAATAG
*
51428781 TAAAATGAAAATAGTAAAATA
1 TAAAATGAAAATAATAAAATA
51428802 ATTGAATAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
20 2 0.05
21 4 0.10
22 26 0.67
23 2 0.05
24 5 0.13
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.23
Consensus pattern (22 bp):
TAAAATGAAAATAATAAAATAG
Found at i:51428778 original size:30 final size:30
Alignment explanation
Indices: 51428744--51428803 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
51428734 TTTAAAGATG
51428744 AAAATAATAAAATGAAAATAGTAAAATAAT
1 AAAATAATAAAATGAAAATAGTAAAATAAT
*
51428774 AAAATAGTAAAATGAAAATAGTAAAATAAT
1 AAAATAATAAAATGAAAATAGTAAAATAAT
51428804 TGAATAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.23
Consensus pattern (30 bp):
AAAATAATAAAATGAAAATAGTAAAATAAT
Found at i:51437164 original size:21 final size:21
Alignment explanation
Indices: 51437140--51437191 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
51437130 CATCTTAAAC
*
51437140 TTAAATTAAATAATAAAAATG
1 TTAAATTAAATAACAAAAATG
*
51437161 TTAAGA-TAAATAACATAAATG
1 TTAA-ATTAAATAACAAAAATG
51437182 TTAAAATTAA
1 TT-AAATTAA
51437192 TCAAATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (21 bp):
TTAAATTAAATAACAAAAATG
Found at i:51456912 original size:103 final size:101
Alignment explanation
Indices: 51456735--51456928 Score: 257
Period size: 103 Copynumber: 1.9 Consensus size: 101
51456725 GAATTGACGA
* ** * **
51456735 ATAAGACCATGATTGGACCATGGCAATGTTTGGATGTAAGACCCTAGCTTGGCTATGGCATTTTA
1 ATAAGACCACGATTGGACCATGGCAATGTTACGATGTAAGACCATAGCTTGGCTATGGCATCCTA
51456800 ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
66 ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
*
51456836 ATAAGACCACGGTTGGACCATGGCAGTATGTATACG-TGTAAGACCATAGC-TGTGCTATGGCAT
1 ATAAGACCACGATTGGACCATGGCA--ATGT-TACGATGTAAGACCATAGCTTG-GCTATGGCAT
* *
51456899 CCTAATGATAAGACCATAACTGGGTTATGG
62 CCTAATGAAAAGACAATAACTGGGTTATGG
51456929 AAATAGTGTA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 23 0.29
102 2 0.03
103 53 0.66
104 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (101 bp):
ATAAGACCACGATTGGACCATGGCAATGTTACGATGTAAGACCATAGCTTGGCTATGGCATCCTA
ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
Found at i:51458320 original size:9 final size:9
Alignment explanation
Indices: 51458306--51458333 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
51458296 TTACAAACAT
51458306 AACCAATTC
1 AACCAATTC
51458315 AACCAATTC
1 AACCAATTC
51458324 AACCAATTC
1 AACCAATTC
51458333 A
1 A
51458334 TTTCATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (9 bp):
AACCAATTC
Found at i:51459070 original size:23 final size:21
Alignment explanation
Indices: 51458997--51459061 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
51458987 CCTGATCAGT
* *
51458997 ATACGACACA-TAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
* *
51459017 AAACGACACACGAGGTGCTTG
1 ATACGACACACGAGGTGCCTG
51459038 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
51459059 ATA
1 ATA
51459062 TATGACACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
20 9 0.24
21 29 0.76
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.17
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:51460253 original size:3 final size:3
Alignment explanation
Indices: 51460245--51460282 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
51460235 TATTCCTAGT
51460245 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
51460283 TATTTTAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51460433 original size:11 final size:11
Alignment explanation
Indices: 51460417--51460458 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 11
51460407 ATTTAAAATA
51460417 TAATAATAATT
1 TAATAATAATT
51460428 TAATAATACTAATT
1 TAAT-A-A-TAATT
51460442 TAATAATAATT
1 TAATAATAATT
51460453 TAATAA
1 TAATAA
51460459 CAGTTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 15 0.54
12 2 0.07
13 2 0.07
14 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAATAATAATT
Found at i:51460435 original size:14 final size:14
Alignment explanation
Indices: 51460416--51460451 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
51460406 TATTTAAAAT
51460416 ATAATAATAATTTA
1 ATAATAATAATTTA
*
51460430 ATAATACTAATTTA
1 ATAATAATAATTTA
51460444 ATAATAAT
1 ATAATAAT
51460452 TTAATAACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:51466547 original size:23 final size:21
Alignment explanation
Indices: 51466474--51466538 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
51466464 CCTGATCAGT
* *
51466474 ATACGACACA-TAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
* *
51466494 AAACGACACACGAGGTGCTTG
1 ATACGACACACGAGGTGCCTG
51466515 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
51466536 ATA
1 ATA
51466539 TATGACACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
20 9 0.24
21 29 0.76
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.17
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:51467738 original size:3 final size:3
Alignment explanation
Indices: 51467723--51467757 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
51467713 TATTCCTAGT
*
51467723 TAA TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
51467758 TATTTTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51467908 original size:11 final size:11
Alignment explanation
Indices: 51467892--51467933 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 11
51467882 ATTTAAAATA
51467892 TAATAATAATT
1 TAATAATAATT
51467903 TAATAATACTAATT
1 TAAT-A-A-TAATT
51467917 TAATAATAATT
1 TAATAATAATT
51467928 TAATAA
1 TAATAA
51467934 CATTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 15 0.54
12 2 0.07
13 2 0.07
14 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAATAATAATT
Found at i:51467910 original size:14 final size:14
Alignment explanation
Indices: 51467891--51467926 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
51467881 TATTTAAAAT
51467891 ATAATAATAATTTA
1 ATAATAATAATTTA
*
51467905 ATAATACTAATTTA
1 ATAATAATAATTTA
51467919 ATAATAAT
1 ATAATAAT
51467927 TTAATAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:51469910 original size:30 final size:30
Alignment explanation
Indices: 51469874--51469976 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 30
51469864 GTGTTTTTAA
*
51469874 AAAATTACATTTTGACCCCTAAACTTTTTT
1 AAAATTACATTTTGACCCCTAAACTTTCTT
*
51469904 AAAATTACATTTTAACCCCTAAACTTTCTT
1 AAAATTACATTTTGACCCCTAAACTTTCTT
* * * * **
51469934 AAAATTATAATTTGACCTC-AAATTTTCCC
1 AAAATTACATTTTGACCCCTAAACTTTCTT
*
51469963 AAAATTACACTTTG
1 AAAATTACATTTTG
51469977 TCCCTAGAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
29 19 0.31
30 43 0.69
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCTAAACTTTCTT
Found at i:51470341 original size:21 final size:21
Alignment explanation
Indices: 51470310--51470350 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
51470300 TGGGGTTATT
51470310 GAAAATAGAAGAGAAAAAAAGG
1 GAAAATAGAAGA-AAAAAAAGG
*
51470332 GAAAA-AGAAGAAAAGAAAG
1 GAAAATAGAAGAAAAAAAAG
51470351 AAAGGAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (21 bp):
GAAAATAGAAGAAAAAAAAGG
Found at i:51470370 original size:23 final size:21
Alignment explanation
Indices: 51470339--51470382 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
51470329 AGGGAAAAAG
51470339 AAGAAAAGAAAGAAAGGAGAGAA
1 AAGAAAAGAAA-AAA-GAGAGAA
*
51470362 AAGAGAAGAAAAAAGAGAGAA
1 AAGAAAAGAAAAAAGAGAGAA
51470383 GAGGAGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 3 0.15
23 10 0.50
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AAGAAAAGAAAAAAGAGAGAA
Found at i:51470378 original size:19 final size:19
Alignment explanation
Indices: 51470333--51470385 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
51470323 AAAAAAAGGG
51470333 AAAAAGAAGAAAAGA-AAGA
1 AAAAAG-AGAAAAGAGAAGA
**
51470352 AAGGAGAGAAAAGAGAAGA
1 AAAAAGAGAAAAGAGAAGA
*
51470371 AAAAAGAGAGAAGAG
1 AAAAAGAGAAAAGAG
51470386 GAGAGGAAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAAGAGAAAAGAGAAGA
Found at i:51470492 original size:21 final size:19
Alignment explanation
Indices: 51470468--51470507 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
51470458 GCCCTGAAGT
51470468 GAAGAAGAAGAAGAAAGAAAG
1 GAAGAAGAAGAA-AAA-AAAG
51470489 GAAGAAGAAGAAAAAAAAG
1 GAAGAAGAAGAAAAAAAAG
51470508 AAAAATGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAAGAAGAAGAAAAAAAAG
Found at i:51470508 original size:15 final size:17
Alignment explanation
Indices: 51470469--51470509 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
51470459 CCCTGAAGTG
51470469 AAGAAGAAGAAGAAAGA
1 AAGAAGAAGAAGAAAGA
51470486 AAGGAAGAAGAAGAAA-A
1 AA-GAAGAAGAAGAAAGA
51470503 AA-AAGAA
1 AAGAAGAA
51470510 AAATGGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.22
17 5 0.22
18 13 0.57
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAAGAAAGA
Found at i:51470523 original size:46 final size:45
Alignment explanation
Indices: 51470472--51470576 Score: 110
Period size: 46 Copynumber: 2.3 Consensus size: 45
51470462 TGAAGTGAAG
* *
51470472 AAGAAG-AAGAAAGAAAGGAAGAAGAAGAAAA-AAAA-GAAAAATGGGA
1 AAGAAGAAAGAAA-AAAGAAAGAA-AA-AAAAGAAAAGGAAAAA-AGGA
*
51470518 AAGAAGAAAGTAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
1 AAGAAGAAAGAAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
*
51470563 AAGAA-AAATAAAAA
1 AAGAAGAAAGAAAAA
51470577 TAGTTGGGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
44 11 0.22
45 14 0.27
46 21 0.41
47 5 0.10
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (45 bp):
AAGAAGAAAGAAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
Found at i:51470537 original size:11 final size:10
Alignment explanation
Indices: 51470516--51470570 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
51470506 AGAAAAATGG
51470516 GAAAGAAGAAA
1 GAAA-AAGAAA
51470527 GTAAAAAGAAA
1 G-AAAAAGAAA
51470538 GAAAAA-AAA
1 GAAAAAGAAA
*
51470547 G-AAAAGGAA
1 GAAAAAGAAA
*
51470556 -AAAAGGAAA
1 GAAAAAGAAA
51470565 GAAAAA
1 GAAAAA
51470571 TAAAAATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
8 4 0.11
9 12 0.33
10 9 0.25
11 8 0.22
12 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:51470547 original size:27 final size:27
Alignment explanation
Indices: 51470517--51470570 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
51470507 GAAAAATGGG
*
51470517 AAAGAAGAAAGTAAAAA-GAAAGAAAAA
1 AAAGAA-AAAGAAAAAAGGAAAGAAAAA
*
51470544 AAAGAAAAGGAAAAAAGGAAAGAAAAA
1 AAAGAAAAAGAAAAAAGGAAAGAAAAA
51470571 TAAAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (27 bp):
AAAGAAAAAGAAAAAAGGAAAGAAAAA
Found at i:51470552 original size:14 final size:13
Alignment explanation
Indices: 51470529--51470570 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
51470519 AGAAGAAAGT
51470529 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
*
51470542 AAAAAGAAAAGGAA
1 AAAAAG-AAAGAAA
*
51470556 AAAAGGAAAGAAA
1 AAAAAGAAAGAAA
51470569 AA
1 AA
51470571 TAAAAATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:51470552 original size:18 final size:17
Alignment explanation
Indices: 51470469--51470552 Score: 53
Period size: 18 Copynumber: 4.5 Consensus size: 17
51470459 CCCTGAAGTG
*
51470469 AAGAAGAAGAAGAAAGAA
1 AAGAA-AAGAAGAAAAAA
*
51470487 AGGAAGAAGAAGAAAAAA
1 AAGAA-AAGAAGAAAAAA
*
51470505 AAGAAAA-ATGGGAAAGAAGA
1 AAGAAAAGA--AGAAA-AA-A
51470525 AAGTAAAAAGAAAGAAAAAA
1 AAG--AAAAG-AAGAAAAAA
51470545 AAGAAAAG
1 AAGAAAAG
51470553 GAAAAAAGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
16 1 0.02
17 2 0.04
18 29 0.55
19 2 0.04
20 8 0.15
21 2 0.04
22 8 0.15
24 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (17 bp):
AAGAAAAGAAGAAAAAA
Found at i:51471176 original size:24 final size:25
Alignment explanation
Indices: 51471130--51471177 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
51471120 AAGCATTTTT
*
51471130 TTATTTTGTATTTATATTTTTAATG
1 TTATTTTATATTTATATTTTTAATG
51471155 TTATTTTAT-TTTAT-TTTATTAAT
1 TTATTTTATATTTATATTT-TTAAT
51471178 TTAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 10 0.48
25 8 0.38
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (25 bp):
TTATTTTATATTTATATTTTTAATG
Found at i:51480859 original size:50 final size:50
Alignment explanation
Indices: 51480801--51480932 Score: 133
Period size: 50 Copynumber: 2.6 Consensus size: 50
51480791 TATTGAGGTT
*
51480801 ATGAGAGGTCCCATGTAAGACCA-ATTCTGGGACACGACATTGGAACCGAG
1 ATGAGAGGTCCCATGTAAGACCATA-TCTGGGACACGACATGGGAACCGAG
* * * * ** * *
51480851 ATGAGAGGTCACC-CGTAAGACCATGTCTCGGACATGGGATGGGCACCGAT
1 ATGAGAGGTC-CCATGTAAGACCATATCTGGGACACGACATGGGAACCGAG
**
51480901 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATATCTGGGA
51480933 TATGGCATTG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
49 2 0.03
50 61 0.94
51 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATATCTGGGACACGACATGGGAACCGAG
Found at i:51480967 original size:49 final size:50
Alignment explanation
Indices: 51480865--51480995 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 50
51480855 GAGGTCACCC
* * * * * *
51480865 GTAAGACCATGTCTCGGACATGGGATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAACTCCCAT
*
51480915 GTAAGACCATATCTGGGATATGGCATTGGCAAC-ATAGGA-AACATCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAAC-TCCCAT
* * *
51480964 GTAAGACCTTGTCTGGCATATGGCTTTGGCAA
1 GTAAGACCATGTCTGGGATATGGCATTGGCAA
51480996 GTTATTATCA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.04
49 39 0.57
50 27 0.39
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAACTCCCAT
Done.