Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 160 of 222
Found at i:51481154 original size:20 final size:20
Alignment explanation
Indices: 51481117--51481154 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51481107 TAAGTAAGCA
*
51481117 AGTAAGTAAACAATTAAGTG
1 AGTAAGTAAACAAGTAAGTG
*
51481137 AGTAAGTAAAGAAGTAAG
1 AGTAAGTAAACAAGTAAG
51481155 CAAAGACCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.24, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAACAAGTAAGTG
Found at i:51488117 original size:50 final size:49
Alignment explanation
Indices: 51488059--51488245 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
51488049 TATTGAGGTT
*
51488059 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
* * * * *
51488109 ATGAGAGGTCCTC-CGTAAGACCATGTCTAGGACATGACATGGGCATCGAT
1 ATGAGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
** * *
51488159 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-AC
* **
51488208 ATGAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
51488246 TTTCGCATGT
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 35 0.31
50 77 0.68
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAC
Found at i:51488480 original size:20 final size:20
Alignment explanation
Indices: 51488455--51488505 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
51488445 TGAGTTTTTT
*
51488455 AAGTAAGCAAATAGGTAAAC
1 AAGTAAGCAAATAAGTAAAC
* *
51488475 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AATAAGTAAAC
51488495 AAGTAAGCAAA
1 AAGTAAGCAAA
51488506 GACCATGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.14
Consensus pattern (20 bp):
AAGTAAGCAAATAAGTAAAC
Found at i:51489871 original size:76 final size:76
Alignment explanation
Indices: 51489656--51490910 Score: 1284
Period size: 76 Copynumber: 16.4 Consensus size: 76
51489646 TGGGCACATG
* * * * *
51489656 CCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCT-GTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
**
51489721 TCGGGTCGCATG
65 TCGGGTCGCACA
51489733 CCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
1 CCGAGGTATTTTTCAATTTCTG----TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
*
51489797 GCCTCGGGTCGTACA
62 GCCTCGGGTCGCACA
* * * *
51489812 CTGAGGTATTTTTCAGTTTCTGGTTTTCAAAAATCAACTCATAATGTGAGAGGTGAGTTGAGCCT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
* * *
51489877 CAGG-CACACG
66 CGGGTCGCACA
* * * ** *
51489887 CCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCATAGTTTGAGAGGTGAGTTGAGT
1 CCGAGGTATTTTTCAATTTC--TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* **
51489952 CTCGGGTCACATG
64 CTCGGGTCGCACA
* * *
51489965 CCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAG
1 CCGAGGTATTTTTCAATTTC---TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
* * *
51490030 CCCCAGGTCGCACG
63 CCTCGGGTCGCACA
* * *
51490044 CTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* * ***
51490109 TCAGG-CACGTG
65 TCGGGTCGCACA
* * ** * *
51490120 CCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCCAGATGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* * **
51490185 TTGGG-CACATG
65 TCGGGTCGCACA
* * * *
51490196 CCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAATACGAGAGGCGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* **
51490261 TCGGG-CACATG
65 TCGGGTCGCACA
* *
51490272 CCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* *
51490337 TCGGG-CACATGA
65 TCGGGTCGCA-CA
* * *
51490349 -CGAGGTATTTTTTTAATTTCTATTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCC
1 CCGAGGTA-TTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* **
51490413 TCGGG-CACATG
65 TCGGGTCGCACA
*
51490424 CCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
** * *
51490489 TTAGGTCACACG
65 TCGGGTCGCACA
* *
51490501 CCCAGGTATTTTTCAAATTC--TTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
1 CCGAGGTATTTTTCAATTTCTGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* * *
51490564 CACGAGTCGCACG
64 CTCGGGTCGCACA
* *
51490577 CTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
* **
51490641 CGGG-CACATG
66 CGGGTCGCACA
* *
51490651 TCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
** * *
51490716 TTAGGTCACACG
65 TCGGGTCGCACA
* *
51490728 CCCAGGTATTTTTCAAATT-TG-TTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
1 CCGAGGTATTTTTCAATTTCTGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* *
51490791 CACGGGTCGCACG
64 CTCGGGTCGCACA
* * * * *
51490804 CTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATCCGATAGGTGAGTTGAGCTT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
*
51490868 CGGGTCGTC-GA
66 CGGGTCG-CACA
* * * *
51490879 CCGAGCTA-TTTTCGATTTATGCTTTTCAAAAA
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAA
51490911 AAAGATAAAA
Statistics
Matches: 1013, Mismatches: 138, Indels: 56
0.84 0.11 0.05
Matches are distributed among these distances:
74 21 0.02
75 167 0.16
76 511 0.50
77 159 0.16
78 23 0.02
79 120 0.12
80 12 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (76 bp):
CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
CGGGTCGCACA
Found at i:51490249 original size:152 final size:152
Alignment explanation
Indices: 51489648--51490865 Score: 1432
Period size: 152 Copynumber: 8.0 Consensus size: 152
51489638 GTTACACTTG
* * * * * *
51489648 GGCACATGCCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* *
51489713 GTTGAGCCTCGGGTCGCATGCCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCA
66 GTTGAGCCTCGGG-CACACGCCGAGGTATTTTTCAATTTCTG---TTTTTTCAAAAATCAACTCA
*
51489777 TAATGCGAGAGGTGAGTTGAGCCTCG
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * * * *
51489803 GGTCGTACA--CTGAGGTATTTTTCAGTTTCTG-GTTTTCAAAAATCAACTCATAATGTGAGAGG
1 GG-C--ACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGG
* * *
51489865 TGAGTTGAGCCTCAGGCACACGCCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCA
63 TGAGTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCT-GTTTTTTCAAAAATCAACTCA
* ** * *
51489930 TAGTTTGAGAGGTGAGTTGAGTCTCG
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * *
51489956 GGTCACATGCCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACGAGAGG
1 GG-CACATGCCGAGGTATTTTTCAATTTCT-GTTTTTTT-AAAAATCAACTCATAATGCGAGAGG
* * * * * *
51490021 TGAGTTGAGCCCCAGGTCGCACGCTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCAACTCA
63 TGAGTTGAGCCTC-GGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCA
*
51490086 TAATGCAAGAGGTGAGTTGAGCCTCA
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * * * * *
51490112 GGCACGTGCCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCCAGATGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * *
51490177 GTTGAGCCTTGGGCACATGCCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAAT
66 GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
* * *
51490242 ACGAGAGGCGAGTTGAGCCTCG
131 GCGAGAGGTGAGTTGAGCCTCA
* * *
51490264 GGCACATGCCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * *
51490329 GTTGAGCCTCGGGCACATGACGAGGTATTTTTTTAATTTCT-ATTTTTCAAAAATCAACTCATAA
66 GTTGAGCCTCGGGCACACGCCGAGGTA-TTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAA
* *
51490393 TACGAGAGGTGAGTTGAGCCTCG
130 TGCGAGAGGTGAGTTGAGCCTCA
* *
51490416 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * * ***
51490481 GTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATTCT-TTTTCAAAAAAATCAACTCATAA
66 GTTGAGCC-TCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAA
*
51490545 TGCGAGAGGTGAGTTGAGCCACGA
130 TGCGAGAGGTGAGTTGAGCCTC-A
* * * * * *
51490569 GTCGCACGCTGAGGTA-TTTTCAATTTCTG-TTTTTCAAATATCAACTCATAATGCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* *
51490632 GTTGAGCCTCGGGCACATGTCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
66 GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
* *
51490697 GCAAGAGGTGAGTTGAGCCTTA
131 GCGAGAGGTGAGTTGAGCCTCA
* * * ***
51490719 GGTCACACGCCCAGGTATTTTTCAAATT-TGTTTTCAAAAAAATCAACTCATAATGCGAGAGGTG
1 GG-CACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTG
* * * *
51490783 AGTTGAGCCACGGGTCGCACGCTGAGGTA-TTTTCAATTTCTG-TTTTTCAAATATCAACTCATA
65 AGTTGAGCCTCGGG-CACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATA
* *
51490846 ATCCGATAGGTGAGTTGAGC
129 ATGCGAGAGGTGAGTTGAGC
51490866 TTCGGGTCGT
Statistics
Matches: 912, Mismatches: 132, Indels: 42
0.84 0.12 0.04
Matches are distributed among these distances:
150 28 0.03
151 132 0.14
152 387 0.42
153 143 0.16
154 18 0.02
155 82 0.09
156 95 0.10
157 24 0.03
158 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (152 bp):
GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
GCGAGAGGTGAGTTGAGCCTCA
Found at i:51490676 original size:227 final size:226
Alignment explanation
Indices: 51489655--51490871 Score: 1502
Period size: 227 Copynumber: 5.3 Consensus size: 226
51489645 TTGGGCACAT
* * *
51489655 GCCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGAGTTGAGC
1 GCCGAGGTATTTTTCAATTTCT-GTTTTTCAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGC
*
51489720 CTCGGGTCGCATGCCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCATAATGCG
64 CTCGGG-CACATGCCGAGGTATTTTTCAATTTCTG---TTTTTTCAAAAATCAACTCATAATGCG
** ** * * *
51489784 AGAGGTGAGTTGAGCCTCGGGTCGTACACTGAGGTATTTTTCAGTTTCTGGTTTTCAAAAATCAA
125 AGAGGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCT-GTTTTCAAAAATCAA
* *
51489849 CTCATAATGTGAGAGGTGAGTTGAGCCTC-AGGCACAC
189 CTCATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * **
51489886 GCCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCATAGTTTGAGAGGTGAGTTGAG
1 GCCGAGGTATTTTTCAATTTC--TGTTTTTC-AAAATCAACTCATAATCCGAGAGGTGAGTTGAG
* * * *
51489951 TCTCGGGTCACATGCCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACG
63 CCTCGGG-CACATGCCGAGGTATTTTTCAATTTC--TGTTTTTTCAAAAATCAACTCATAATGCG
** * * *
51490016 AGAGGTGAGTTGAGCCCCAGGTCGCACGCTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCA
125 AGAGGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTG--TTTTCAAAAATCA
* * **
51490081 ACTCATAATGCAAGAGGTGAGTTGAGCCTC-AGGCACGT
188 ACTCATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * *
51490119 GCCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCC-AGATGTGAGTTGAG
1 GCCGAGGTATTTTTCAATTTCTG--TTTTTCAAAATCAACTCATAAT-CCGAGAGGTGAGTTGAG
* * * *
51490183 CCTTGGGCACATGCCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAATACGAGA
63 CCTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGA
* * * * * *
51490248 GGCGAGTTGAGCC-TCGGGCACATGCCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACT
128 GGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTG--TTTTCAAAAATCAACT
* *
51490312 CATAATGCGAGAGGTGAGTTGAGCCTCG-GGCACAT
191 CATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * *
51490347 GACGAGGTATTTTTTTAATTTCTATTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGC
1 GCCGAGGTA-TTTTTCAATTTCTGTTTTTC-AAAATCAACTCATAATCCGAGAGGTGAGTTGAGC
*
51490412 CTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAG
64 CTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAG
* *
51490477 GTGAGTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATTCT-TTTTCAAAAAAATCAACTC
129 GTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTC--AAAAATCAACTC
* *
51490541 ATAATGCGAGAGGTGAGTTGAGCCACGAGTCGCAC
192 ATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* *
51490576 GCTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATGCGAGAGGTGAGTTGAGCC
1 GCCGAGGTATTTTTCAATTTCTGTTTTTCAAA-ATCAACTCATAATCCGAGAGGTGAGTTGAGCC
* *
51490640 TCGGGCACATGTCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGG
65 TCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAGG
* *
51490705 TGAGTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATT-TGTTTTCAAAAAAATCAACTCA
130 TGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTC--AAAAATCAACTCA
*
51490769 TAATGCGAGAGGTGAGTTGAGCCACG-GGTCGCAC
193 TAATGCGAGAGGTGAGTTGAGCCTCGAGG-CGCAC
* * *
51490803 GCTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATCCGATAGGTGAGTTGAGCT
1 GCCGAGGTATTTTTCAATTTCTGTTTTTCAAA-ATCAACTCATAATCCGAGAGGTGAGTTGAGCC
51490867 TCGGG
65 TCGGG
51490872 TCGTCGACCG
Statistics
Matches: 884, Mismatches: 80, Indels: 48
0.87 0.08 0.05
Matches are distributed among these distances:
226 10 0.01
227 277 0.31
228 220 0.25
229 90 0.10
231 47 0.05
232 153 0.17
233 86 0.10
235 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (226 bp):
GCCGAGGTATTTTTCAATTTCTGTTTTTCAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCT
CGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGT
GAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTCAAAAATCAACTCATAA
TGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
Found at i:51491008 original size:39 final size:41
Alignment explanation
Indices: 51490941--51491017 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
51490931 GTATCCTTTT
*
51490941 TATAAATATATATACACGTACTTATTTTTATAATTTATCTA
1 TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
* * *
51490982 TATAAATATATACATACTTA-TT-TTTTTATATTTTAT
1 TATAAATATATACACACGTACTTATTTTTATAATTTAT
51491018 AATTTTCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.41
40 2 0.06
41 17 0.53
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (41 bp):
TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
Found at i:51495954 original size:16 final size:16
Alignment explanation
Indices: 51495932--51495985 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
51495922 GTAGTGGACG
51495932 CAAAAAAATAAAAAAA
1 CAAAAAAATAAAAAAA
* *
51495948 TAAAAAAACAAAAAAA
1 CAAAAAAATAAAAAAA
*
51495964 CAAGAAAAT-AAAAAA
1 CAAAAAAATAAAAAAA
51495979 CAAAAAA
1 CAAAAAA
51495986 CCTCTACCGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 12 0.38
16 20 0.62
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (16 bp):
CAAAAAAATAAAAAAA
Found at i:51495960 original size:23 final size:23
Alignment explanation
Indices: 51495932--51495985 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
51495922 GTAGTGGACG
* *
51495932 CAAAAAAATAAAAAAATAAAAAAA
1 CAAAAAAACAAGAAAAT-AAAAAA
51495956 CAAAAAAACAAGAAAATAAAAAA
1 CAAAAAAACAAGAAAATAAAAAA
51495979 CAAAAAA
1 CAAAAAA
51495986 CCTCTACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 13 0.46
24 15 0.54
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (23 bp):
CAAAAAAACAAGAAAATAAAAAA
Found at i:51495984 original size:8 final size:8
Alignment explanation
Indices: 51495932--51495985 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
51495922 GTAGTGGACG
51495932 CAAAAAAA
1 CAAAAAAA
*
51495940 TAAAAAAA
1 CAAAAAAA
*
51495948 TAAAAAAA
1 CAAAAAAA
51495956 CAAAAAAA
1 CAAAAAAA
*
51495964 CAAGAAAA
1 CAAAAAAA
*
51495972 -TAAAAAA
1 CAAAAAAA
51495979 CAAAAAA
1 CAAAAAA
51495986 CCTCTACCGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
7 5 0.13
8 34 0.87
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (8 bp):
CAAAAAAA
Found at i:51496840 original size:93 final size:96
Alignment explanation
Indices: 51496676--51496854 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 96
51496666 TGAATCTTGG
*
51496676 CAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGCTATCAACAAAATTTCATCTTAT
1 CAAAATTTGCTATCTTAATTAATTTATT-ATTTCGAGCTTTGCTATCAACAAAATTTCATCTTAT
51496741 CCATTGTGATAATCTTTTTCATCTTATCTTAA
65 CCATTGTGATAATCTTTTTCATCTTATCTTAA
* * * * * *
51496773 CAAAATTTGCTATCTTAATTAATTTA-T-TTT-GAGCTTTGTTCTTAATAAAATTTCATTTTGTC
1 CAAAATTTGCTATCTTAATTAATTTATTATTTCGAGCTTTGCTATCAACAAAATTTCATCTTATC
51496835 CATTGTGATAATCTTTTTCA
66 CATTGTGATAATCTTTTTCA
51496855 AGCATTTTTC
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 46 0.61
94 3 0.04
96 1 0.01
97 25 0.33
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (96 bp):
CAAAATTTGCTATCTTAATTAATTTATTATTTCGAGCTTTGCTATCAACAAAATTTCATCTTATC
CATTGTGATAATCTTTTTCATCTTATCTTAA
Found at i:51497360 original size:24 final size:24
Alignment explanation
Indices: 51497328--51497385 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
51497318 ATGTCCCAAA
*
51497328 ATTATAGTGGACTGAACCTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
* *
51497352 ATTACAGTGGATTGAACTTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
51497376 ATTACAGTGG
1 ATTACAGTGG
51497386 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTGAACCTTAAAG
Found at i:51497712 original size:85 final size:84
Alignment explanation
Indices: 51497623--51498549 Score: 518
Period size: 85 Copynumber: 10.8 Consensus size: 84
51497613 AAACCAATCC
*
51497623 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
51497688 GAGCAGATCACATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * * * * * *
51497708 TATCTCCCTAAAGTTACAGCGGAACAGACAGAAGA-AACTA-ATCCTATCTAC-CTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATA-AA-ACCAC-AGATCTTATCT-CTCTGAAGTTGCA
* * *
51497770 GT-GAAGC-GAATTAAAACCACAAATCT
62 GTAG-AGCAG-A-TCAAATC-C-AGTCT
* ** *** * *
51497796 TATCTCTCTGAAGTTGCAGTAAAGCAGATCGCATC-CAG-TCTTATCTCTCTGAAGTTGCAGTGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
* ** * * *
51497859 AGCAAAAAAAGAAACCAATCC
66 AGC-AGATCA-AATCCAGTCT
* * *
51497880 TATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* **
51497945 GAGTAGATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * ** * ** * * *
51497965 TATCTCTCTGAAGTTACAGCAGAGCAGACAAAAGAAACCA-ATCTTATCTCCCTAAAATTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCTTATCTCTCTGAAGTTGCAGT
* * * *
51498029 GGAGCGGATTAAAACCACAGATCT
64 AGAGCAGA-TCAAATC-CAG-TCT
* * * *** *
51498053 TATCTCTCTGAAGTTGCAGTAGAGCATATCGCATC-CAG-TCTTATCTCTCTGAAGTTGCAGTAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
** * *
51498116 AACAGACAGAAGAAAT-CAATCC
66 ---AG-CAGATCAAATCCAGTCT
* * * * * * *
51498138 TATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCATCTCTTTGAAGTTGTAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * **
51498203 GAACAAATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * ** * * *
51498223 TATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAACCA-ATCCTATCTCCCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCTTATCTCTCTGAAGTTGCAGT
* * *
51498287 GGAGCAGATTAAAACCAAAGATCT
64 AGAGCAGATCAAATCC--AG-TCT
* * * *** * * *
51498311 TATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATC-CAG-TCTTATCTCCCTGAAGTTGCAGCGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCA--GT
** * *
51498374 AGCAGACAGAAGAAAT-CAATCC
64 AG-AG-CAGATCAAATCCAGTCT
* *
51498396 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
**
51498461 GAGCAGATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * * * *
51498481 TATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCACTA-ATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCAC-AGATCTTATCTCTCTGAAGTTGCAGT
*
51498545 GGAGC
64 AGAGC
51498550 GGATTAAAAC
Statistics
Matches: 625, Mismatches: 169, Indels: 96
0.70 0.19 0.11
Matches are distributed among these distances:
84 52 0.08
85 354 0.57
86 39 0.06
87 38 0.06
88 132 0.21
89 10 0.02
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCAAATCCAGTCT
Found at i:51498571 original size:44 final size:43
Alignment explanation
Indices: 51497487--51498559 Score: 503
Period size: 44 Copynumber: 25.0 Consensus size: 43
51497477 CAGTAAAGCT
* * * *
51497487 ACAATCATATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
51497530 ACAGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * **
51497573 -CAATCTTATCTCCCTGAAGTTGTAATGGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* *
51497615 ACCAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * *
51497659 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-ACATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * * *
51497702 -CAGTCTTATCTCCCTAAAGTTACAGCGGAACAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * *
51497744 ACTAATCCTATCTACCTGAAGTTGCAGTGAAGC-GAATTAAAACC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAG-ATCAAAACC
* * ** ** *
51497788 ACAAATCTTATCTCTCTGAAGTTGCAGTAAAGCAGATC-GCATC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
51497831 -CAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAAAAAAAGAAAC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAA-AACC
* * *
51497874 -CAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * ** *
51497916 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** **
51497959 -CAGTCTTATCTCTCTGAAGTTACAGCAGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* * * * *
51498001 ACCAATCTTATCTCCCTAAAATTGCAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
51498045 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * *
51498088 -CAGTCTTATCTCTCTGAAGTTGCAGTAGAACAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * * *
51498130 ATCAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
** * * * * ** *
51498174 ACAAAT-CTCATCTCTTTGAAGTTGTAGTAGAACAAATC-GCATC
1 AC-AATCCT-ATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * **
51498217 -CAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* *
51498259 ACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * ** *
51498303 AAAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * *
51498346 -CAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * *
51498388 ATCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * ** *
51498432 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * *
51498475 -CAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA-CTGAAGCC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATC-AAAACC
* *
51498517 ACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAAC
51498560 GATGAATCCT
Statistics
Matches: 764, Mismatches: 211, Indels: 109
0.70 0.19 0.10
Matches are distributed among these distances:
40 7 0.01
41 221 0.29
42 19 0.02
43 73 0.10
44 428 0.56
45 16 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (43 bp):
ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
Found at i:51498587 original size:129 final size:129
Alignment explanation
Indices: 51497488--51498559 Score: 1588
Period size: 129 Copynumber: 8.3 Consensus size: 129
51497478 AGTAAAGCTA
* *
51497488 CAATCATATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
51497553 GCAATAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGTAATGGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* *
51497617 CAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * * *
51497682 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAAGTTACAGCGGAACAGACAGAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * * * *
51497746 TAATCCTATCTACCTGAAGTTGCAGTGAAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * *
51497811 GCAGTAAAGCAGATCGCATCCAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-AAAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
51497874 CAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * **
51497939 ACAGTAGAGTAGATCGCATCCAGTCTTATCTCTCTGAAGTTACAGCAGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * *
51498003 CAATCTTATCTCCCTAAAATTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * * *
51498068 GCAGTAGAGCATATCGCATCCAGTCTTATCTCTCTGAAGTTGCAGTAGAACAGACAGAAGAAAT
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * * * *
51498132 CAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCATCTCTTTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
51498197 GTAGTAGAACAAATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * *
51498261 CAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCAAAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
51498326 GTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACAGAAGAAAT
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
51498390 CAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* ** **
51498455 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
51498519 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
51498560 GATGAATCCT
Statistics
Matches: 843, Mismatches: 99, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
128 114 0.14
129 729 0.86
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (129 bp):
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
Found at i:51500653 original size:39 final size:41
Alignment explanation
Indices: 51500586--51500662 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
51500576 GTATCCTTTT
*
51500586 TATAAATATATATACACGTACTTATTTTTATAATTTATCTA
1 TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
* * *
51500627 TATAAATATATACATACTTA-TT-TTTTTATATTTTAT
1 TATAAATATATACACACGTACTTATTTTTATAATTTAT
51500663 AATTTTCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.41
40 2 0.06
41 17 0.53
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (41 bp):
TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
Found at i:51504275 original size:28 final size:28
Alignment explanation
Indices: 51504235--51504304 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
51504225 AATTCAAAAC
51504235 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
51504263 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
51504291 AGGCTATTCTTTTC
1 AGGCTATTCTTTTC
51504305 TATTGAGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (28 bp):
AGGCTATTCTTTTCAGAGTTCGCCACAA
Found at i:51505567 original size:27 final size:27
Alignment explanation
Indices: 51505509--51505568 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
51505499 TAAACCAACT
* * *
51505509 AAAAAAATTAAGAAAAAAATAAAGATT
1 AAAAAAATAAAGAAAAAAATAAAAATA
* * *
51505536 TAAAAAATAAATAAATAAATAAAAATA
1 AAAAAAATAAAGAAAAAAATAAAAATA
51505563 AAAAAA
1 AAAAAA
51505569 GCAAAACATG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (27 bp):
AAAAAAATAAAGAAAAAAATAAAAATA
Found at i:51510717 original size:5 final size:5
Alignment explanation
Indices: 51510709--51510738 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
51510699 TATTTTAACC
*
51510709 TATTA TATTG TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
51510739 GAAGGTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:51513809 original size:6 final size:7
Alignment explanation
Indices: 51513790--51513814 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51513780 GTTTTAATTG
51513790 AATTTTT
1 AATTTTT
51513797 AATTTTT
1 AATTTTT
51513804 AATTTTT
1 AATTTTT
51513811 AATT
1 AATT
51513815 GATATTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:51520096 original size:24 final size:24
Alignment explanation
Indices: 51520041--51520100 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
51520031 GTAGAACGAT
*
51520041 GATGGTGACCTAGTGGACGTCGGAC
1 GATGGTGA-CTAGTGGACCTCGGAC
*
51520066 GGT-GTGACTAGTGGACACT-GGAC
1 GATGGTGACTAGTGGAC-CTCGGAC
51520089 GATGGTGACTAG
1 GATGGTGACTAG
51520101 CAATAGGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 15 0.50
24 13 0.43
25 2 0.07
ACGTcount: A:0.22, C:0.17, G:0.40, T:0.22
Consensus pattern (24 bp):
GATGGTGACTAGTGGACCTCGGAC
Found at i:51521644 original size:14 final size:14
Alignment explanation
Indices: 51521625--51521662 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
51521615 AATTTTGTAT
51521625 TTTATATATAAAAA
1 TTTATATATAAAAA
* *
51521639 TTTATAAATAATAA
1 TTTATATATAAAAA
51521653 TTTA-ATATAA
1 TTTATATATAA
51521663 TTTAATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTATATATAAAAA
Found at i:51524659 original size:16 final size:16
Alignment explanation
Indices: 51524628--51524658 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
51524618 ACATTTTAAG
51524628 ATTTTGGGTTTATTTT
1 ATTTTGGGTTTATTTT
51524644 ATTTT-GGTTTATTTT
1 ATTTTGGGTTTATTTT
51524659 TGTTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (16 bp):
ATTTTGGGTTTATTTT
Found at i:51525088 original size:44 final size:43
Alignment explanation
Indices: 51525025--51525336 Score: 143
Period size: 44 Copynumber: 6.9 Consensus size: 43
51525015 GATCTACTCT
* * *
51525025 ACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* * *
51525069 ACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
** * *
51525113 GTTATAATCACAGGGAGATAAGAT-TTCTGGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC-----CG--CT-C-C
* * * *
51525166 TACTATAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* * ** * *
51525211 ACTGTAATCTTAGGGAGATAGGAT-TACAAGCTTCAATCTGCTTC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
* **
51525255 GCTGTAATCTCAGGGAGATAAGAT-TTCTGGCTTCAATCTACTCC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATCCGCTCC
*
51525299 GCTGTAATCTCAGGGAGATAAGAT-TTCTAGCTTCAATC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC
51525337 TGATGTGATC
Statistics
Matches: 208, Mismatches: 37, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
42 3 0.01
44 163 0.78
45 3 0.01
46 1 0.00
47 2 0.01
49 3 0.01
51 2 0.01
52 1 0.00
53 2 0.01
54 25 0.12
55 1 0.00
56 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTGTAATCTCAGGGAGATAAGATCTTTGCTTCAATCCGCTCC
Found at i:51525245 original size:142 final size:142
Alignment explanation
Indices: 51524983--51525293 Score: 543
Period size: 142 Copynumber: 2.2 Consensus size: 142
51524973 GCACCGCTTG
* *
51524983 AGGGAG-TAAGATTCCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
*
51525047 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTC
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
*
51525112 CGTTATAATCAC
131 CGCTATAATCAC
51525124 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
* *
51525189 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTGCTT
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
* *
51525254 CGCTGTAATCTC
131 CGCTATAATCAC
51525266 AGGGAGATAAGATTTCTGGCTTCAATCT
1 AGGGAGATAAGATTTCTGGCTTCAATCT
51525294 ACTCCGCTGT
Statistics
Matches: 161, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
141 6 0.04
142 155 0.96
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (142 bp):
AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
CGCTATAATCAC
Found at i:51525290 original size:186 final size:186
Alignment explanation
Indices: 51525070--51525468 Score: 611
Period size: 186 Copynumber: 2.1 Consensus size: 186
51525060 ATCCGCTCCA
* * * *
51525070 CTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTATAATCACAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
* * *
51525135 ATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTGTTT
66 ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
* *
51525200 TAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTGCT-TCG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCT-G
* * *
51525256 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
* * *
51525321 ATTTCTAGCTTCAATCTGATGTGATCTACTCTATTGTAACTTCAGAGAGACAAGATCCTTTATTT
66 ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
* *
51525386 TAATTCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCTG
* *
51525442 TTGTAATCTCAGGGAGATGAGATTTCT
1 CTGTAATCTCAGGGAGATAAGATTTCT
51525469 TCTTCAGTCT
Statistics
Matches: 193, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
186 192 0.99
187 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (186 bp):
CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCTG
Found at i:51525337 original size:44 final size:44
Alignment explanation
Indices: 51525207--51525337 Score: 190
Period size: 44 Copynumber: 3.0 Consensus size: 44
51525197 TTTTAATCCG
* * * * * *
51525207 CTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
* *
51525251 CTTCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
51525295 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCT
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCT
51525338 GATGTGATCT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 77 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
Found at i:51527456 original size:31 final size:30
Alignment explanation
Indices: 51527398--51527474 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
51527388 TCATATTTTA
**
51527398 TTTTGACTTTGATTGATTTCTCTTTTTTGC
1 TTTTGACTTTGATTTTTTTCTCTTTTTTGC
* *
51527428 TTTTGACTTTGATTTTTCTTTTCTTTTTTGT
1 TTTTGACTTTGATTTTT-TTCTCTTTTTTGC
*
51527459 TTTTGATTTTGATTTT
1 TTTTGACTTTGATTTT
51527475 GATTTTTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 15 0.37
31 26 0.63
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.70
Consensus pattern (30 bp):
TTTTGACTTTGATTTTTTTCTCTTTTTTGC
Found at i:51527468 original size:7 final size:7
Alignment explanation
Indices: 51527452--51527488 Score: 53
Period size: 6 Copynumber: 5.7 Consensus size: 7
51527442 TTTCTTTTCT
51527452 TTTTTG-
1 TTTTTGA
51527458 TTTTTGA
1 TTTTTGA
51527465 -TTTTGA
1 TTTTTGA
51527471 -TTTTGA
1 TTTTTGA
51527477 TTTTTGA
1 TTTTTGA
51527484 TTTTT
1 TTTTT
51527489 TTATCAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.11, C:0.00, G:0.14, T:0.76
Consensus pattern (7 bp):
TTTTTGA
Found at i:51534878 original size:50 final size:49
Alignment explanation
Indices: 51534824--51535550 Score: 223
Period size: 50 Copynumber: 14.5 Consensus size: 49
51534814 TCGTTATGGT
*
51534824 TTCAATCTTTCTAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGAC
1 TTCAATCTTTCTAATTGCACTGCCGG-GAAACCAGATCCGCCGTTGTGAC
* * * * *** * * * *
51534874 TTCAATC-TGCTACACTGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGC
1 TTCAATCTTTCTA-ATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* ** * * *
51534924 TTCAATCTTTTTAATTGCGTTGTCGAAGAAACCAAATCCGCCGTTGTGAC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * * * *** * * *
51534974 TTGAATC-TGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * * *
51535024 TTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAAC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * ** * ** *
51535074 TTCAATC-TGCTCCATTACACCGCCAGGGAAATAAGATCTGCTATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * *
51535124 GTCAAAAAAT-TTTTTAATTGCGCTGTCGGGGAAACCAAATCCGCCGTTGTGAC
1 TTC----AATCTTTCTAATTGCACTG-CCGGGAAACCAGATCCGCCGTTGTGAC
* * * * *** * * *
51535177 TTCAATC-TGCTCCACTGCACCGCCAGGGAAGTAAGATCTGCTGTTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * *
51535227 TTCAAACTTT-TAAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGAC
1 TTCAATCTTTCT-AATTGCACTG-CCGGGAAACCAGATCCGCCGTTGTGAC
* * * * * *** * *
51535277 TTCAATC-TGCTCCACTACACAGCCAGGGAAGTAAGATCCGCCGTTGAGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * *
51535327 TTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAGATCCGCCGTTGTGCC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * *** *
51535377 TTCAATCTGCTCT-ACTACACCGCCAGGGAAGTAAGATCCGCCGTTGTGGC
1 TTCAATCT-TTCTAATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * *
51535427 TTCAATCTTTTTAATTGC-GTAGCCGGGGAAACCAGATCCGCTGTTGTGAC
1 TTCAATCTTTCTAATTGCACT-GCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * *** * *
51535477 TTCAAT-ATGCTCCACTGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * *
51535527 TTCAATATTTTTAATTGCAATGCC
1 TTCAATCTTTCTAATTGCACTGCC
51535551 AAAGAGATAG
Statistics
Matches: 453, Mismatches: 192, Indels: 64
0.64 0.27 0.09
Matches are distributed among these distances:
49 23 0.05
50 379 0.84
51 19 0.04
53 26 0.06
54 6 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (49 bp):
TTCAATCTTTCTAATTGCACTGCCGGGAAACCAGATCCGCCGTTGTGAC
Found at i:51535382 original size:303 final size:300
Alignment explanation
Indices: 51534825--51535544 Score: 1034
Period size: 303 Copynumber: 2.4 Consensus size: 300
51534815 CGTTATGGTT
* * * *
51534825 TCAATCTTTCTAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTACACT
1 TCAATCTTTTTAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACT
* * * *
51534890 GTACCGCCAGGGAAGTAAGGT-TCGCCATTGTGGCTTCAATCTTTTTAATTGCGTTGTCGAAGAA
66 GCACCGCCAGGGAAGTAAGATCT-GCCATTGTGGCTTCAAACTTTTTAATTGCGCTGTCGAAGAA
* * *
51534954 ACCAAATCCGCCGTTGTGACTTGAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCATT
130 ACCAAATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAGGGAAGTAAGATCCGCCATT
*
51535019 GTGGCTTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAACTTCAATCTGC
195 GAGGCTTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAACTTCAATCTGC
* * *
51535084 TCCATTACACCGCCAGGGAAATAAGATCTGCTATTGTGGCG
260 TCCACTACACCGCCAGGGAAATAAGATCCGCCATTGTGGCG
*
51535125 TCAAAAAAT-TTTTTAATTGCGCTGTCGGGGAAACCAAATCCGCCGTTGTGACTTCAATCTGCTC
1 TC----AATCTTTTTAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTC
** * **
51535189 CACTGCACCGCCAGGGAAGTAAGATCTGCTGTTGTGGCTTCAAACTTTTAAATTGCGCTGTCGGG
62 CACTGCACCGCCAGGGAAGTAAGATCTGCCATTGTGGCTTCAAACTTTTTAATTGCGCTGTCGAA
*
51535254 GAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAGGGAAGTAAGATCCGCC
127 GAAACCAAATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAGGGAAGTAAGATCCGCC
* * **
51535319 GTTGAGGCTTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAGATCCGCCGTTGTGCCTTCAATC
192 ATTGAGGCTTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAACTTCAATC
* * * *
51535384 TGCTCTACTACACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCT
257 TGCTCCACTACACCGCCAGGGAAATAAGATCCGCCATTGTGGCG
* * *
51535428 TCAATCTTTTTAATTGCG-TAGCCGGGGAAACCAGATCCGCTGTTGTGACTTCAATATGCTCCAC
1 TCAATCTTTTTAATTGCGCT-GTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCAC
* *
51535492 TGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATA-TTTTTAATTGC
65 TGCACCGCCAGGGAAGTAAGATCTGCCATTGTGGCTTCAA-ACTTTTTAATTGC
51535545 AATGCCAAAG
Statistics
Matches: 373, Mismatches: 39, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
299 4 0.01
300 100 0.27
301 1 0.00
303 264 0.71
304 4 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (300 bp):
TCAATCTTTTTAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACT
GCACCGCCAGGGAAGTAAGATCTGCCATTGTGGCTTCAAACTTTTTAATTGCGCTGTCGAAGAAA
CCAAATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAGGGAAGTAAGATCCGCCATTG
AGGCTTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAACTTCAATCTGCT
CCACTACACCGCCAGGGAAATAAGATCCGCCATTGTGGCG
Found at i:51535569 original size:100 final size:100
Alignment explanation
Indices: 51534783--51535544 Score: 997
Period size: 100 Copynumber: 7.6 Consensus size: 100
51534773 CTCAAGTCCA
* * ** * * * * * *
51534783 CTCCACTGCACCGCCATGGAAGTAAGATATGTCGTTATGGTTTCAATCTTTCTAATTGCACTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
51534848 GGAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* ** * * *
51534883 CTACACTGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGCTTCAATCTTTTTAATTGCGTTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
* *
51534948 GAAGAAACCAAATCCGCCGTTGTGACTTGAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* *
51534983 CTCCACTACACCGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTTAATTACGCTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
51535048 GAAGAAACCAGATCCGCCGTTGTAACTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * * * *
51535083 CTCCATTACACCGCCAGGGAAATAAGATCTGCTATTGTGGCGTCAAAAAAT-TTTTTAATTGCGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTC----AATCTTTTTAATTGCGC
** *
51535147 TGTCGGGGAAACCAAATCCGCCGTTGTGACTTCAATCTG
62 TGTCGAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * ** * *
51535186 CTCCACTGCACCGCCAGGGAAGTAAGATCTGCTGTTGTGGCTTCAAACTTTTAAATTGCGCTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
**
51535251 GGGGAAACCAGATCCGCCGTTGTGACTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * *
51535286 CTCCACTACACAGCCAGGGAAGTAAGATCCGCCGTTGAGGCTTCAATCTTTTTAATTGCGCTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
51535351 GAAGAAACCAGATCCGCCGTTGTGCCTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * *
51535386 CTCTACTACACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCG-TAGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCT-GT
** * *
51535450 CGGGGAAACCAGATCCGCTGTTGTGACTTCAATATG
65 CGAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * *
51535486 CTCCACTGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATATTTTTAATTGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGC
51535545 AATGCCAAAG
Statistics
Matches: 588, Mismatches: 68, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
99 3 0.01
100 496 0.84
103 86 0.15
104 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (100 bp):
CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
Found at i:51536970 original size:14 final size:15
Alignment explanation
Indices: 51536928--51536972 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
51536918 CTAGCCTCTC
*
51536928 CATTTTTTACTTTTT
1 CATTTTTCACTTTTT
51536943 CCATTTTTCA-TTTTT
1 -CATTTTTCACTTTTT
51536958 CA-TTTTCACTTTTT
1 CATTTTTCACTTTTT
51536972 C
1 C
51536973 GTCATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 6 0.22
14 8 0.30
15 5 0.19
16 8 0.30
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (15 bp):
CATTTTTCACTTTTT
Found at i:51540518 original size:21 final size:23
Alignment explanation
Indices: 51540471--51540518 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
51540461 TCAAACTCAC
*
51540471 TTTTTCTTCCTCTATTTGCTCTA
1 TTTTTCTTCCTCTAGTTGCTCTA
*
51540494 -TTTTCTT-CTCTAGTT-CTGTA
1 TTTTTCTTCCTCTAGTTGCTCTA
51540514 TTTTT
1 TTTTT
51540519 TCTTTCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.18
21 11 0.50
22 7 0.32
ACGTcount: A:0.08, C:0.21, G:0.06, T:0.65
Consensus pattern (23 bp):
TTTTTCTTCCTCTAGTTGCTCTA
Found at i:51541019 original size:22 final size:22
Alignment explanation
Indices: 51540993--51541039 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
51540983 CCGAGATGTC
51540993 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
51541015 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
51541037 ATC
1 ATC
51541040 TCCTTCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (22 bp):
ATCCCTCCTTGGTGTAGCCACT
Found at i:51541044 original size:20 final size:21
Alignment explanation
Indices: 51540996--51541044 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
51540986 AGATGTCATC
51540996 CCTCCTTGGTGTAGCCACTAT
1 CCTCCTTGGTGTAGCCACTAT
51541017 CCCTCCTTGGTGTAGCCACTAT
1 -CCTCCTTGGTGTAGCCACTAT
51541039 -CTCCTT
1 CCTCCTT
51541045 CAATGGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 6 0.22
22 21 0.78
ACGTcount: A:0.12, C:0.37, G:0.16, T:0.35
Consensus pattern (21 bp):
CCTCCTTGGTGTAGCCACTAT
Found at i:51543412 original size:22 final size:21
Alignment explanation
Indices: 51543387--51543441 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
51543377 GTAAGTTATG
*
51543387 AAAATATGTATACATATATACT
1 AAAATATGTATACATATA-AAT
*
51543409 AAAATATGTATATATATAAAT
1 AAAATATGTATACATATAAAT
*
51543430 ATAATATGTATA
1 AAAATATGTATA
51543442 TATAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATATGTATACATATAAAT
Found at i:51543764 original size:3 final size:3
Alignment explanation
Indices: 51543756--51543816 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
51543746 ATACATAGTT
* * * * *
51543756 ATA ATA ATA ACA ATT ATA ATA AT- ATA A-A ATA CTA ATA CTA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
51543802 ATA CTA ATA ATA ATA
1 ATA ATA ATA ATA ATA
51543817 GTATAAAAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51548232 original size:19 final size:17
Alignment explanation
Indices: 51548203--51548249 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
51548193 TATGTATACG
51548203 AAAAATGAAAGAACAGAA
1 AAAAATGAAAGAA-AGAA
51548221 AAAAATGCAAAGAAAGAA
1 AAAAATG-AAAGAAAGAA
51548239 AAAAATAGAAA
1 AAAAAT-GAAA
51548250 AAGAACCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.74, C:0.04, G:0.15, T:0.06
Consensus pattern (17 bp):
AAAAATGAAAGAAAGAA
Found at i:51548854 original size:15 final size:16
Alignment explanation
Indices: 51548834--51548864 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
51548824 TAAATAAACA
51548834 AAAATAAA-CCAAAAT
1 AAAATAAACCCAAAAT
51548849 AAAATAAACCCAAAAT
1 AAAATAAACCCAAAAT
51548865 CTTAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.16, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAACCCAAAAT
Found at i:51550678 original size:21 final size:22
Alignment explanation
Indices: 51550654--51550698 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
51550644 ATAAAATATG
*
51550654 TTATAATTTGAAATTTT-CTTT
1 TTATAATTTAAAATTTTACTTT
**
51550675 TTATGTTTTAAAATTTTACTTT
1 TTATAATTTAAAATTTTACTTT
51550697 TT
1 TT
51550699 TTTGATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (22 bp):
TTATAATTTAAAATTTTACTTT
Found at i:51560724 original size:13 final size:12
Alignment explanation
Indices: 51560688--51560725 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
51560678 CCTTTCCCCC
51560688 TCCCTTCTCTC-
1 TCCCTTCTCTCT
51560699 TCCCTTCTCTCT
1 TCCCTTCTCTCT
51560711 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
51560724 TC
1 TC
51560726 TTTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:51561213 original size:3 final size:3
Alignment explanation
Indices: 51561190--51561259 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
51561180 AATATCCTTG
* * *
51561190 TTA TT- TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
51561236 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
51561260 GTACGTGTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:51561256 original size:23 final size:22
Alignment explanation
Indices: 51561201--51561262 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
51561191 TATTTTATAT
*
51561201 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
51561222 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
51561244 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
51561263 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:51561269 original size:23 final size:23
Alignment explanation
Indices: 51561196--51561270 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
51561186 CTTGTTATTT
* *
51561196 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
51561219 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
51561244 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
51561267 TATA
1 TATA
51561271 CATATATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Found at i:51561334 original size:25 final size:24
Alignment explanation
Indices: 51561287--51561334 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
51561277 TATATTTTCA
*
51561287 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
51561311 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
51561335 ATATATATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:51573051 original size:130 final size:131
Alignment explanation
Indices: 51572817--51573072 Score: 349
Period size: 130 Copynumber: 2.0 Consensus size: 131
51572807 GTTTATTATA
*
51572817 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
1 CAGGTCTTATCACCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
* *
51572882 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGC
66 ATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCTGAGA-TTACAGCAGAGTAGATCGC
51572946 AT
130 AT
* ** *
51572948 CAGGTCTTATCACCCTGAGGTTACAG-GGAGTAGA-CAGAAGAATTTCAGATCTTATCTCCCTGA
1 CAGGTCTTATCACCCTGAGATTACAGTGGAACAGACCA-AAGAATTTCAGATCCTATCTCCCTGA
* * * * *
51573011 GGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGAT
65 GATTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCTCTGAGATTACAGCAGAGTAGAT
51573073 TGAAGCTAGT
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
129 4 0.04
130 81 0.74
131 25 0.23
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (131 bp):
CAGGTCTTATCACCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCCTATCTCCCTGAG
ATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCTGAGATTACAGCAGAGTAGATCGCA
T
Found at i:51573244 original size:218 final size:218
Alignment explanation
Indices: 51572866--51574316 Score: 992
Period size: 230 Copynumber: 6.4 Consensus size: 218
51572856 AGAATTTCAG
51572866 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
51572931 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGAGTAGACAGAAGAATTTCAG
66 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGAGTAGACAGAAGAATTTCAG
51572996 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTAC
131 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTAC
51573061 AGCGGAGTAGATTGAAGCTAGTA
196 AGCGGAGTAGATTGAAGCTAGTA
51573084 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
*
51573149 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGAGTAGACCGAAGAATTTCAG
66 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGAGTAGACAGAAGAATTTCAG
51573214 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTAC
131 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTAC
51573279 AGCGGAGTAGATTGAAGCTAGTA
196 AGCGGAGTAGATTGAAGCTAGTA
*
51573302 ATCCTATCTCTCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
1 ATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
* * * *
51573366 CAGTAGAGTAGATCACATCAGATTGAAGTCAGAGATCTTATCTCCCTGAGGTTACAGTGGAGCAG
65 CAGCAGAGTAG-----ATC-----GCA-TCAG-G-TCTTATCACCCTGAGGTTACAG-GGAGTAG
** * * * * * * * *
51573431 ATTGAAGCCA---GAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA-ATCC
116 ACAGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCT
* ** ** *
51573492 TATCTCTCTGA-AGTTACAGTGGAGCGGATT-AAAATAAAG-G
179 TATCTCTCTGAGA-TTACAGCGGAGTAGATTGAAGCT--AGTA
* * * ** *
51573532 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAGAGATCTTATCTC
1 ATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTA-A--A-A-T-AA---AG-GATCTTATCTC
* * ** * * * * * * * *
51573596 CCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGAAGTAG
55 TCTGAAGTTACAGCAGAGTAGATCGCA-TCAG-G-TCTTATCACCCTGAGGTTACAG-GGAGTAG
** * * * * * * *** *
51573661 ATTGAAG-CTAGT-A-ATCCTATCTCTCTGAAGTTACAGTGGAGCGGATT-AAAATAAAGGATCT
116 ACAGAAGAAT-TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA-GATCT
*
51573722 TATCTCTCTGA-AGTTACAGTAGAGTAGATCACATCAGATTGAAG-TCAG-A
179 TATCTCTCTGAGA-TTACAG-CG-G-AG------T-AGATTGAAGCT-AGTA
* * * * ***
51573771 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAGAGATCTTATCTCTCTG-AGAT
1 -ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GATCTTATCTCTCTGAAG-T
* * * * * * * * * ** **
51573834 TACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGA-TTAA-A
63 TACAGCAGAGTAGATCGCATC-AG--GTCTTATCACCCTGAGGTTACAG-GGAGTAGACAGAAGA
** * * *
51573897 A-TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAGAGATC
124 ATTTCA-GATCTTATCTCCCTGAGGTTACAGT-G-G-AG-------CAGATTGAAGCCAGAGATC
* * * * *
51573961 TTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-A
178 TTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
* * * ** ** * *
51574001 GATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCT--AGTAATCCTATCTCTCTGAAGT
1 -ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGAAGT
** ** *** * * * * * *
51574064 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATC
63 TACAGCAGAGTAGA-TCGCAT-CAGG-TCTTATCACCCTGAGGTTACAG-GGAGTAGA-CAGA--
51574129 AG-ATTGAAGTCAGAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTT
121 AGAATT----TC--AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTT
51574193 ATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
180 ATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTA
*
51574232 ATCCTATCTCTCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
1 ATCCTATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTA
* *
51574296 CAGTAGAGTAGATCACATCAG
65 CAGCAGAGTAGATCGCATCAG
51574317 ATTGAAGTCA
Statistics
Matches: 1001, Mismatches: 141, Indels: 172
0.76 0.11 0.13
Matches are distributed among these distances:
217 1 0.00
218 288 0.29
223 3 0.00
228 6 0.01
229 25 0.02
230 479 0.48
231 39 0.04
232 14 0.01
233 6 0.01
234 3 0.00
235 5 0.00
236 3 0.00
237 4 0.00
238 2 0.00
239 6 0.01
240 110 0.11
241 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (218 bp):
ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGAGTAGACAGAAGAATTTCAG
ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTAC
AGCGGAGTAGATTGAAGCTAGTA
Found at i:51574242 original size:142 final size:141
Alignment explanation
Indices: 51573986--51574255 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 141
51573976 TACAGTGGAG
* * *
51573986 CAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * * *
51574051 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCTCTGAAGTTACAGCGGAGCAGATTAAAAT-AAGAATCCTATCTCTCTGAAGTTACAGTAG
51574116 AGTAGATCACAT
130 AGTAGATCACAT
* * * *
51574128 CAGATTGAAGTCAGAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTA-ATCC
* **
51574192 TATCTCTCTG-AGATTACAGCGGAGTAGATTGAAGCT-AGTAATCCTATCTCTCTGAAGTTACAG
65 TATCTCTCTGAAG-TTACAGCGGAGCAGATT-AAAATAAG-AATCCTATCTCTCTGAAGTTACAG
51574255 T
127 T
51574256 GGAGCGGATT
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 5 0.05
142 102 0.93
143 3 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (141 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
ATCTCTCTGAAGTTACAGCGGAGCAGATTAAAATAAGAATCCTATCTCTCTGAAGTTACAGTAGA
GTAGATCACAT
Found at i:51574428 original size:142 final size:141
Alignment explanation
Indices: 51574172--51574441 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 141
51574162 TACAGTGGAG
* * *
51574172 CAGATTGAAGCCAGAGATCTTATCTCTCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * * *
51574237 ATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCTCTGAAGTTACAGCGGAGCAGATTAAAAT-AAGAATCCTATCTCTCTGAAGTTACAGTAG
51574302 AGTAGATCACAT
130 AGTAGATCACAT
* * * *
51574314 CAGATTGAAGTCAGAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG-AGATCT
1 CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTA-ATCC
* **
51574378 TATCTCTCTG-AGATTACAGCGGAGTAGATTGAAGCT-AGTAATCCTATCTCTCTGAAGTTACAG
65 TATCTCTCTGAAG-TTACAGCGGAGCAGATT-AAAATAAG-AATCCTATCTCTCTGAAGTTACAG
51574441 T
127 T
51574442 GGAGCTGATT
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 5 0.05
142 102 0.93
143 3 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (141 bp):
CAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
ATCTCTCTGAAGTTACAGCGGAGCAGATTAAAATAAGAATCCTATCTCTCTGAAGTTACAGTAGA
GTAGATCACAT
Found at i:51574529 original size:186 final size:186
Alignment explanation
Indices: 51573212--51574509 Score: 2578
Period size: 186 Copynumber: 7.0 Consensus size: 186
51573202 GAAGAATTTC
51573212 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
51573277 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51573342 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51573398 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
51573463 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51573528 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51573584 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
*
51573649 ACAGCGAAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51573714 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51573770 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
51573835 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51573900 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51573956 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
51574021 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51574086 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51574142 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
51574207 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51574272 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
51574328 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
*
51574393 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCTGATTAAAATA
66 ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
51574458 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAG
131 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAG
51574510 CCGATAACTC
Statistics
Matches: 1109, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 1109 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (186 bp):
AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCTCTGAGATT
ACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAATA
AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGATTGAAGTCAG
Found at i:51574622 original size:46 final size:46
Alignment explanation
Indices: 51574523--51574622 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 46
51574513 ATAACTCTAT
* * * *
51574523 CTCCCTGTATTTGGCAGTGGAACAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTAC
* * *
51574569 CTTCCTGTATTTGGCAG-CGAAGCAGATCGATGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTCGAA-CAGATCGAAGATGGCAGATCTTAC
51574615 CTCCCTGT
1 CTCCCTGT
51574623 GACGACAGTG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
45 3 0.07
46 42 0.93
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTAC
Found at i:51574776 original size:41 final size:40
Alignment explanation
Indices: 51574696--51574808 Score: 190
Period size: 41 Copynumber: 2.8 Consensus size: 40
51574686 CGAAGATTAC
* *
51574696 AGTCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCA
51574736 AGTCTTATCTCCCTAAGCAGTTAGTGGAGCAGATCACATCA
1 AGTCTTATCTCCCTAAGCAG-TAGTGGAGCAGATCACATCA
*
51574777 AGTCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
51574809 CTAAAAACAC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (40 bp):
AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCA
Found at i:51575195 original size:8 final size:8
Alignment explanation
Indices: 51575184--51575208 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
51575174 CCACCTACCC
51575184 CCCACTTG
1 CCCACTTG
51575192 CCCACTTG
1 CCCACTTG
51575200 CCCACTTG
1 CCCACTTG
51575208 C
1 C
51575209 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:51575733 original size:13 final size:12
Alignment explanation
Indices: 51575697--51575734 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
51575687 CCTTTCCCCC
51575697 TCCCTTCTCTC-
1 TCCCTTCTCTCT
51575708 TCCCTTCTCTCT
1 TCCCTTCTCTCT
51575720 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
51575733 TC
1 TC
51575735 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:51576224 original size:3 final size:3
Alignment explanation
Indices: 51576200--51576270 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
51576190 AATATCCTTG
* * * *
51576200 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
51576247 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
51576271 GTACGTGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:51576267 original size:23 final size:22
Alignment explanation
Indices: 51576212--51576273 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
51576202 ATTTTTATAT
*
51576212 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
51576233 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
51576255 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
51576274 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:51576280 original size:23 final size:23
Alignment explanation
Indices: 51576207--51576281 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
51576197 TTGTTATTTT
* *
51576207 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
51576230 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
51576255 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
51576278 TATA
1 TATA
51576282 CATGTATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Found at i:51576347 original size:25 final size:24
Alignment explanation
Indices: 51576300--51576347 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
51576290 TATATTTTCA
*
51576300 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
51576324 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
51576348 ATATATATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:51582524 original size:97 final size:94
Alignment explanation
Indices: 51582423--51582608 Score: 259
Period size: 93 Copynumber: 1.9 Consensus size: 94
51582413 ATTCATCTTT
* *
51582423 TTAATTAATAAC-TCTTTTATTTATATAAATAAAATAACAAAAATGTAATTATATAATAAAAATA
1 TTAATTAATAACTTC-TTTATTTATATAAAT-AAAT---AAAAATATAAATATATAATAAAAATA
51582487 TA-ATTTTTATATATATCATTATGTTAAAAAAAA
61 TATATTTTTATATATATCATTATGTTAAAAAAAA
* * *
51582520 TTAATTAATAACTTCTTTATTTATTTATATAAATAAATATATAAATATATAATAAAAATATATAT
1 TTAATTAATAACTTCTTTATTTATATAAATAAATAAAAATATAAATATATAATAAAAATATATAT
*
51582585 TTTTATATTTATCATTATGTTAAA
66 TTTTATATATATCATTATGTTAAA
51582609 TATATTTTAT
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
93 25 0.31
94 25 0.31
96 4 0.05
97 25 0.31
98 2 0.02
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (94 bp):
TTAATTAATAACTTCTTTATTTATATAAATAAATAAAAATATAAATATATAATAAAAATATATAT
TTTTATATATATCATTATGTTAAAAAAAA
Found at i:51589016 original size:29 final size:28
Alignment explanation
Indices: 51588984--51589040 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
51588974 AAATTTATGT
51588984 AAACCTACAAAAATTATAAAAATTCATAA
1 AAACCTACAAAAATTATAAAAATT-ATAA
* * * *
51589013 AAACTTATAAATATTATATAAATTATAA
1 AAACCTACAAAAATTATAAAAATTATAA
51589041 TAAATTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (28 bp):
AAACCTACAAAAATTATAAAAATTATAA
Found at i:51589060 original size:12 final size:12
Alignment explanation
Indices: 51589043--51589095 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 12
51589033 AATTATAATA
51589043 AATTATAAAAAT
1 AATTATAAAAAT
51589055 AATTATAAAAAAT
1 AATTAT-AAAAAT
*
51589068 AAAACATATTAAAAAT
1 --AA-TTA-TAAAAAT
51589084 AATTATAAAAAT
1 AATTATAAAAAT
51589096 TCATAATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
12 13 0.38
13 8 0.24
14 2 0.06
15 2 0.06
16 8 0.24
17 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (12 bp):
AATTATAAAAAT
Found at i:51589061 original size:29 final size:28
Alignment explanation
Indices: 51589003--51589092 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
51588993 AAAATTATAA
* *
51589003 AAATTCATAAAAACTTATAAATATTA-TAT
1 AAATT-ATAAAAA-TTATAAAAATAATTAT
51589032 AAATTATAATAAATTATAAAAATAATTAT
1 AAATTATAA-AAATTATAAAAATAATTAT
**
51589061 AAAAAATAAAACA-TATTAAAAATAATTAT
1 AAATTATAAAA-ATTA-TAAAAATAATTAT
51589090 AAA
1 AAA
51589093 AATTCATAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (28 bp):
AAATTATAAAAATTATAAAAATAATTAT
Found at i:51589062 original size:19 final size:19
Alignment explanation
Indices: 51588992--51589095 Score: 59
Period size: 19 Copynumber: 5.3 Consensus size: 19
51588982 GTAAACCTAC
*
51588992 AAAAATTATAA-AAATTCAT
1 AAAAATAATAATAAATT-AT
* *
51589011 AAAAACTTATAA-ATATTAT
1 AAAAA-TAATAATAAATTAT
* *
51589030 ATAAATTATAATAAATTAT
1 AAAAATAATAATAAATTAT
* **
51589049 AAAAATAATTATAAAAAAT
1 AAAAATAATAATAAATTAT
* *
51589068 AAAACATATTAAAAATAATTAT
1 AAAA-ATAAT-AATA-AATTAT
51589090 AAAAAT
1 AAAAAT
51589096 TCATAATAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
18 6 0.09
19 35 0.52
20 14 0.21
21 4 0.06
22 8 0.12
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATAATAATAAATTAT
Found at i:51589122 original size:10 final size:9
Alignment explanation
Indices: 51588992--51589121 Score: 91
Period size: 10 Copynumber: 13.2 Consensus size: 9
51588982 GTAAACCTAC
51588992 AAAAATTAT
1 AAAAATTAT
51589001 AAAAATTCAT
1 AAAAATT-AT
51589011 AAAAACTTAT
1 AAAAA-TTAT
*
51589021 AAATATTAT
1 AAAAATTAT
*
51589030 ATAAATTAT
1 AAAAATTAT
51589039 AATAAATTAT
1 AA-AAATTAT
51589049 AAAAATAATTAT
1 --AAA-AATTAT
*
51589061 AAAAAATA-
1 AAAAATTAT
*
51589069 AAACATATTAA
1 AAA-A-ATTAT
51589080 AAATAATTAT
1 AAA-AATTAT
51589090 AAAAATTCAT
1 AAAAATT-AT
* *
51589100 AATAAGTTCT
1 AA-AAATTAT
51589110 AATAAATTAT
1 AA-AAATTAT
51589120 AA
1 AA
51589122 TCATTTATTG
Statistics
Matches: 98, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
8 3 0.03
9 28 0.29
10 48 0.49
11 11 0.11
12 8 0.08
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:51590607 original size:21 final size:21
Alignment explanation
Indices: 51590586--51590624 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51590576 TTTTATGTTA
*
51590586 AATAAT-GTTATAATAATATT
1 AATAATGGTTAAAATAATATT
51590606 AATAATGGTTAAAATAATA
1 AATAATGGTTAAAATAATA
51590625 AAACATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (21 bp):
AATAATGGTTAAAATAATATT
Found at i:51592258 original size:3 final size:3
Alignment explanation
Indices: 51592250--51592322 Score: 112
Period size: 3 Copynumber: 24.7 Consensus size: 3
51592240 CTTTTACTTT
* * *
51592250 TTC TTC TTC TTC TAC TTC -TC TTA TTC TTC TTA TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
51592297 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
51592323 TCTTGATTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
2 2 0.03
3 61 0.97
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:51600613 original size:18 final size:18
Alignment explanation
Indices: 51600590--51600624 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51600580 TACGCCCGCT
51600590 ACTCCCAAGGCGGAGACC
1 ACTCCCAAGGCGGAGACC
*
51600608 ACTCCCACGGCGGAGAC
1 ACTCCCAAGGCGGAGAC
51600625 GGTAAGCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.40, G:0.29, T:0.06
Consensus pattern (18 bp):
ACTCCCAAGGCGGAGACC
Found at i:51610928 original size:22 final size:22
Alignment explanation
Indices: 51610900--51610941 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
51610890 ATCCATTCTC
51610900 ATGGGTCCTTTTTTTTATTAGA
1 ATGGGTCCTTTTTTTTATTAGA
51610922 ATGGGTCCTTTTTTTTATTA
1 ATGGGTCCTTTTTTTTATTA
51610942 AGGGATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.57
Consensus pattern (22 bp):
ATGGGTCCTTTTTTTTATTAGA
Found at i:51613881 original size:3 final size:3
Alignment explanation
Indices: 51613868--51613901 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
51613858 ATGTCTTTGC
*
51613868 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
51613902 ATTGGCTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:51618109 original size:3 final size:3
Alignment explanation
Indices: 51618101--51618127 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
51618091 CACCCAGTTC
51618101 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
51618128 GGTAAATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:51622133 original size:18 final size:18
Alignment explanation
Indices: 51622110--51622152 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51622100 ACTCAATTTA
**
51622110 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
51622128 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
51622146 AACCCAA
1 AACCCAA
51622153 TAATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:51622273 original size:9 final size:9
Alignment explanation
Indices: 51622256--51622295 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
51622246 GTAGTGATTC
51622256 AATTCGGTT
1 AATTCGGTT
*
51622265 AATTTGGTT
1 AATTCGGTT
*
51622274 AATTCGATT
1 AATTCGGTT
*
51622283 AATTCGGGT
1 AATTCGGTT
51622292 AATT
1 AATT
51622296 TTTAACCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:51623979 original size:24 final size:25
Alignment explanation
Indices: 51623952--51624032 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
51623942 ACTCTCTTTT
*
51623952 GAGCTTCTCG-T-TTATTGCTCTTCG
1 GAGCTTCTCGATATT-TGGCTCTTCG
*
51623976 GAGCTTCTTGATATTTGGCTCTTCG
1 GAGCTTCTCGATATTTGGCTCTTCG
* ** **
51624001 AAGCTTCTCGATAAATGGCTCTTAT
1 GAGCTTCTCGATATTTGGCTCTTCG
51624026 GAGCTTC
1 GAGCTTC
51624033 CCGTTAATGG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
24 9 0.20
25 35 0.76
26 2 0.04
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (25 bp):
GAGCTTCTCGATATTTGGCTCTTCG
Found at i:51624000 original size:25 final size:25
Alignment explanation
Indices: 51623968--51624046 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
51623958 CTCGTTTATT
* **
51623968 GCTCTTCGGAGCTTCTTGATATTTG
1 GCTCTTCGGAGCTTCTCGATAAATG
*
51623993 GCTCTTCGAAGCTTCTCGATAAATG
1 GCTCTTCGGAGCTTCTCGATAAATG
** * *
51624018 GCTCTTATGAGCTTCCCG-TTAATG
1 GCTCTTCGGAGCTTCTCGATAAATG
51624042 GCTCT
1 GCTCT
51624047 CCAGAGCGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 10 0.22
25 35 0.78
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (25 bp):
GCTCTTCGGAGCTTCTCGATAAATG
Found at i:51624081 original size:48 final size:49
Alignment explanation
Indices: 51624009--51624143 Score: 128
Period size: 48 Copynumber: 2.8 Consensus size: 49
51623999 CGAAGCTTCT
* ** *
51624009 CGATAAATGGCTCTTATGAGCTTCCCGTTAATGGCTCTCCAGAGCGTCC
1 CGATACATGGCTCACATGAACTTCCCGTTAATGGCTCTCCAGAGCGTCC
* * * * * * *
51624058 TGATA-TTGGCTCACTTGAACTTCCCATTAATGGTTCTCCGGAGCTTCC
1 CGATACATGGCTCACATGAACTTCCCGTTAATGGCTCTCCAGAGCGTCC
* * *
51624106 CGTTACATGGCTCACATGAGCTTCTCGTTATATGGCTC
1 CGATACATGGCTCACATGAACTTCCCGTTA-ATGGCTC
51624144 GAAAGAGCTT
Statistics
Matches: 66, Mismatches: 18, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
48 37 0.56
49 23 0.35
50 6 0.09
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (49 bp):
CGATACATGGCTCACATGAACTTCCCGTTAATGGCTCTCCAGAGCGTCC
Found at i:51624126 original size:25 final size:24
Alignment explanation
Indices: 51624014--51624157 Score: 94
Period size: 24 Copynumber: 5.9 Consensus size: 24
51624004 CTTCTCGATA
**
51624014 AATGGCTCTTATGAGCTTCCCGTT
1 AATGGCTCACATGAGCTTCCCGTT
* * * *
51624038 AATGGCTCTCCA-GAGCGTCCTGAT
1 AATGGCTC-ACATGAGCTTCCCGTT
* * * *
51624062 ATTGGCTCACTTGAACTTCCCATT
1 AATGGCTCACATGAGCTTCCCGTT
* * **
51624086 AATGGTTCTCCGGAGCTTCCCGTT
1 AATGGCTCACATGAGCTTCCCGTT
*
51624110 ACATGGCTCACATGAGCTTCTCGTT
1 A-ATGGCTCACATGAGCTTCCCGTT
*
51624135 ATATGGCTCGA-AAGAGCTTCCCG
1 A-ATGGCTC-ACATGAGCTTCCCG
51624158 ATTATATGCT
Statistics
Matches: 88, Mismatches: 28, Indels: 7
0.72 0.23 0.06
Matches are distributed among these distances:
23 1 0.01
24 49 0.56
25 37 0.42
26 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (24 bp):
AATGGCTCACATGAGCTTCCCGTT
Found at i:51624168 original size:25 final size:26
Alignment explanation
Indices: 51624098--51624169 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 26
51624088 TGGTTCTCCG
* *
51624098 GAGCTTCCCGTTACATGGCTC-ACAT
1 GAGCTTCCCGTTATATGGCTCGACAA
*
51624123 GAGCTTCTCGTTATATGGCTCGA-AA
1 GAGCTTCCCGTTATATGGCTCGACAA
51624148 GAGCTTCCCGATTATAT-GCTCG
1 GAGCTTCCCG-TTATATGGCTCG
51624170 TATGGGCACA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 34 0.83
26 7 0.17
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (26 bp):
GAGCTTCCCGTTATATGGCTCGACAA
Found at i:51627210 original size:232 final size:232
Alignment explanation
Indices: 51626799--51627238 Score: 595
Period size: 239 Copynumber: 1.9 Consensus size: 232
51626789 GTAATATATA
51626799 ATATATTAATTATTATCATATATTATTATTTATTATACTGGTTGAAATATGCTCTAAATCCCTAT
1 ATATATTAATTATTATCATATATTATTATTTATTATACTGGTTGAAATATGCTCTAAATCCCTAT
* * * *
51626864 AATTTATATGCATTTGGAAGTTAGACCTCCTACTATATTATATAATGTTGTATTGTGTCATATAG
66 AATTTATATACATTTGAAAGTTAAACCACCTACTATATTATATAATGTTGTATTGTGTCATATA-
* * *
51626929 TATATAATATATTGATAGTTTATATATATGCATCAATGATTAAACATTATAATATTATGTAATAC
130 TATATAATATATTAATAATTTATATATATGCATCAATGATTAAACA-T-T-ATATCATGTAATAC
51626994 CATATCTTTTATTATATTCTATAATATAACAGTAGTACATT
192 CATATCTTTTATTATATTCTATAATATAACAGTAGTACATT
* * * * * *
51627035 ATATATTAATTATTATCATATGTTATTGTTTATTATTATATTGGTTGAAATATGCTTTAAGTTCC
1 ATATATTAATTATTATCATATATTA-T-TAT-TTATTATACTGGTTGAAATATGCTCTAAATCCC
** * *
51627100 TATCCTTTGTGTACATTTGAAAGTTAAACCACCTACTATATTATATAATG-T-TA-T-T-TCATA
63 TATAATTTATATACATTTGAAAGTTAAACCACCTACTATATTATATAATGTTGTATTGTGTCATA
* **
51627160 T-TATATAATATATTAATAATTTATATATATGCATCGATGATTAAACATTATATCATGTAATATT
128 TATATATAATATATTAATAATTTATATATATGCATCAATGATTAAACATTATATCATGTAATACC
51627224 ATATCTTTTATTATA
193 ATATCTTTTATTATA
51627239 ATCTGTATTA
Statistics
Matches: 181, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
229 27 0.15
230 1 0.01
231 1 0.01
232 43 0.24
234 6 0.03
235 1 0.01
236 25 0.14
237 3 0.02
238 3 0.02
239 71 0.39
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.46
Consensus pattern (232 bp):
ATATATTAATTATTATCATATATTATTATTTATTATACTGGTTGAAATATGCTCTAAATCCCTAT
AATTTATATACATTTGAAAGTTAAACCACCTACTATATTATATAATGTTGTATTGTGTCATATAT
ATATAATATATTAATAATTTATATATATGCATCAATGATTAAACATTATATCATGTAATACCATA
TCTTTTATTATATTCTATAATATAACAGTAGTACATT
Found at i:51635556 original size:19 final size:18
Alignment explanation
Indices: 51635515--51635584 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 18
51635505 AAAAATACAA
*
51635515 ATTTTAGAATATTTAAAAAT
1 ATTTT-GAAT-TTTAAAATT
51635535 ATTTTGAATTTTAAAATTT
1 ATTTTGAATTTTAAAA-TT
*
51635554 ATTTTTAATTTTTGAAAATT
1 ATTTTGAA-TTTT-AAAATT
51635574 ATTTTG-ATTTT
1 ATTTTGAATTTT
51635585 TTTTGTAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
18 11 0.25
19 13 0.30
20 16 0.36
21 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
ATTTTGAATTTTAAAATT
Found at i:51635586 original size:20 final size:18
Alignment explanation
Indices: 51635526--51635585 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
51635516 TTTTAGAATA
* *
51635526 TTTAAAAATATTTTGAAT
1 TTTAAAATTATTTTGATT
*
51635544 TTTAAAATTTATTTTTAATT
1 TTTAAAA-TTA-TTTTGATT
51635564 TTTGAAAATTATTTTGATT
1 TTT-AAAATTATTTTGATT
51635583 TTT
1 TTT
51635586 TTTGTAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 7 0.20
19 12 0.34
20 12 0.34
21 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TTTAAAATTATTTTGATT
Found at i:51638346 original size:24 final size:25
Alignment explanation
Indices: 51638310--51638358 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
51638300 ACAAATTAAA
* *
51638310 ATAATAATTTAATATATTTTAAAACC
1 ATAATAA-TTAATAAATTTAAAAACC
51638336 ATAATAA-TAATAAATTTAAAAAC
1 ATAATAATTAATAAATTTAAAAAC
51638359 ACCCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATAATTAATAAATTTAAAAACC
Found at i:51639177 original size:16 final size:17
Alignment explanation
Indices: 51639149--51639182 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51639139 AAAAGGAAAG
*
51639149 AAGAAAAATAGAATCGA
1 AAGAAAAATAGAACCGA
51639166 AAGAAAAA-AGAACCGA
1 AAGAAAAATAGAACCGA
51639182 A
1 A
51639183 TCGGAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.68, C:0.09, G:0.18, T:0.06
Consensus pattern (17 bp):
AAGAAAAATAGAACCGA
Found at i:51639192 original size:22 final size:22
Alignment explanation
Indices: 51639144--51639200 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 22
51639134 GAACAAAAAG
51639144 GAAAGAAGAAAA-ATA--GAATC
1 GAAAGAAGAAAAGA-ACCGAATC
51639164 GAAAGAA-AAAAGAACCGAATC
1 GAAAGAAGAAAAGAACCGAATC
51639185 GGAAAGAAGAAAAGAA
1 -GAAAGAAGAAAAGAA
51639201 AAACCTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 5 0.16
20 8 0.25
21 5 0.16
22 7 0.22
23 7 0.22
ACGTcount: A:0.65, C:0.07, G:0.23, T:0.05
Consensus pattern (22 bp):
GAAAGAAGAAAAGAACCGAATC
Found at i:51640066 original size:100 final size:100
Alignment explanation
Indices: 51639942--51640505 Score: 305
Period size: 100 Copynumber: 5.6 Consensus size: 100
51639932 ACACGTAACC
** ** ** ** * * * *
51639942 TTAATCTGCTTAACTGGGATGTCGGGGAAATGAGATTTGCTGTTGTAGCTTCAATTTGTTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCACA
* *
51640007 GGACCGCTTGGG-GAG-TAAGATTCGCTGTTGAAGCT
66 GGACCGCCTGGGAG-GTTAA-ATTCGCTATTGAAGCT
* * *
51640042 TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCCACA
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCACA
* * *
51640107 GTATCGCCTGGGAGGTTAAATTCGCTATTGTAGCT
66 GGACCGCCTGGGAGGTTAAATTCGCTATTGAAGCT
* * * *
51640142 TTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCAC-
* ** * * * *** **
51640207 A-CATTGCCTGGGAAG-TAGGATTTGCCGCTGTGGCT
65 AGGACCGCCTGGGAGGTTA-AATTCGCTATTGAAGCT
* * * ** * * * * *
51640242 TTAATCTTTTTAACTACAATGTCGAGGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCACA
* * * * * ** **
51640307 GCATCGTCTGGGAAG-TAGGATTCGCTGCTGTGGCT
66 GGACCGCCTGGGAGGTTA-AATTCGCTATTGAAGCT
* * * * * * *
51640342 TTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAACCTGTTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCAC-
* * ** * * * *** **
51640407 A-TACTGCCAAGGAAG-TAGGATTCACCGCTGTGGCT
65 AGGACCGCCTGGGAGGTTA-AATTCGCTATTGAAGCT
* * * * * *
51640442 TTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCAC
1 TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCAC
51640506 TGTATCGCTT
Statistics
Matches: 398, Mismatches: 60, Indels: 12
0.85 0.13 0.03
Matches are distributed among these distances:
99 2 0.01
100 391 0.98
101 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
TTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCACA
GGACCGCCTGGGAGGTTAAATTCGCTATTGAAGCT
Found at i:51640077 original size:50 final size:50
Alignment explanation
Indices: 51640023--51640507 Score: 283
Period size: 50 Copynumber: 9.7 Consensus size: 50
51640013 CTTGGGGAGT
* * *
51640023 AAGATTCGCTGTTGAAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * * * * * * *
51640073 AAGATTCACCGTTGTGGCTTTAATCTATTCCACAG-TATCGCCTGGGAGGTT
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAAT-GTCGGGGAAG-C
** *
51640124 AA-ATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * * * * * *
51640173 AAGATTCACCGATGTAGCTTTAATCTATTCCACTACATTGCCTGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * * * *
51640223 AGGATTTGCCGCTGTGGCTTTAATCTTTTTAACTACAATGTCGAGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* ** * * * * * *
51640273 AAGATTCACCAATATGGCTTTAATCTGTTCCACTGC-ATCGTCTGGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAAT-GTCGGGGAAGC
* * * * * *
51640323 AGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * * * ** * * ** *
51640373 AAGATTCACCGATGTGGCTTTAACCTGTTCCACTATACTGCCAAGGAAGT
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * * *
51640423 AGGATTCACCGCTGTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
* * * * *
51640473 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTG
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTG
51640508 TATCGCTTGA
Statistics
Matches: 321, Mismatches: 108, Indels: 12
0.73 0.24 0.03
Matches are distributed among these distances:
49 6 0.02
50 309 0.96
51 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGGAAGC
Found at i:51640293 original size:200 final size:200
Alignment explanation
Indices: 51640039--51640513 Score: 709
Period size: 200 Copynumber: 2.4 Consensus size: 200
51640029 CGCTGTTGAA
* * *
51640039 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * *
51640104 ACAGTATCGCCTGGGAGGTTA-AATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGG
66 ACTGTATCGCCTGGGAAG-TAGAATTCGCTACTGTAGCTTTAATCTTTTGAACTGCAATGTCGAG
* * ** **
51640168 GAAGCAAGATTCACCGATGTAGCTTTAATCTATTCCACTACATTGCCTGGGAAGTAGGATTTGCC
130 GAAGCAAGATTCACCGATGTAGCTTTAACCTATTCCACTACACTGCCAAGGAAGTAGGATTCACC
51640233 GCTGTG
195 GCTGTG
* * *
51640239 GCTTTAATCTTTTTAACTACAATGTCGAGGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * * *
51640304 ACTGCATCGTCTGGGAAGTAGGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGAGG
66 ACTGTATCGCCTGGGAAGTAGAATTCGCTACTGTAGCTTTAATCTTTTGAACTGCAATGTCGAGG
* * *
51640369 AAGCAAGATTCACCGATGTGGCTTTAACCTGTTCCACTATACTGCCAAGGAAGTAGGATTCACCG
131 AAGCAAGATTCACCGATGTAGCTTTAACCTATTCCACTACACTGCCAAGGAAGTAGGATTCACCG
51640434 CTGTG
196 CTGTG
51640439 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
51640504 ACTGTATCGC
66 ACTGTATCGC
51640514 TTGAGAGATA
Statistics
Matches: 244, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
199 2 0.01
200 242 0.99
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (200 bp):
GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
ACTGTATCGCCTGGGAAGTAGAATTCGCTACTGTAGCTTTAATCTTTTGAACTGCAATGTCGAGG
AAGCAAGATTCACCGATGTAGCTTTAACCTATTCCACTACACTGCCAAGGAAGTAGGATTCACCG
CTGTG
Found at i:51640506 original size:100 final size:100
Alignment explanation
Indices: 51640039--51640506 Score: 622
Period size: 100 Copynumber: 4.7 Consensus size: 100
51640029 CGCTGTTGAA
* *
51640039 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * *** *
51640104 AC-AGTA-TCGCCTGGGAGGTTA-AATTCGCTATTGTA
66 ACTA-TACT-GCCTGGGAAG-TAGGATTCGCCGCTGTG
* * *
51640139 GCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTAGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * *
51640204 ACTACATTGCCTGGGAAGTAGGATTTGCCGCTGTG
66 ACTATACTGCCTGGGAAGTAGGATTCGCCGCTGTG
* * * *
51640239 GCTTTAATCTTTTTAACTACAATGTCGAGGAAGCAAGATTCACCAATATGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* *
51640304 ACTGCAT-C-GTCTGGGAAGTAGGATTCGCTGCTGTG
66 ACT--ATACTGCCTGGGAAGTAGGATTCGCCGCTGTG
* *
51640339 GCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAACCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
** *
51640404 ACTATACTGCCAAGGAAGTAGGATTCACCGCTGTG
66 ACTATACTGCCTGGGAAGTAGGATTCGCCGCTGTG
*
51640439 GCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
51640504 ACT
66 ACT
51640507 GTATCGCTTG
Statistics
Matches: 326, Mismatches: 35, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
98 2 0.01
99 3 0.01
100 318 0.98
101 2 0.01
102 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (100 bp):
GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
ACTATACTGCCTGGGAAGTAGGATTCGCCGCTGTG
Found at i:51640796 original size:44 final size:44
Alignment explanation
Indices: 51640724--51641397 Score: 264
Period size: 44 Copynumber: 14.7 Consensus size: 44
51640714 ATCTGACGCG
* * *
51640724 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* * * * *
51640768 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGAT--TACTAGCTTCA
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCCT-TTA-TTTTA
* * * **
51640812 ATTTGCTCCTCTGTAA-TCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCG
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGA--TC---CTT-TAT-T--T-TA
* * *
51640866 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* ** * * *
51640910 ATCCGCTCCACTGTAA-TCTCAGGGAGATTGGAT--TACTAGCTTCA
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCCT-TTA-TTTTA
* * *
51640954 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGAT-TTTTGGCTTCAATCTGA
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCCTTT--ATT---T-T-A
* * *
51641004 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ----ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* * ** * * *
51641052 ATCTGCCCCACTGTAACTTCAGGGAGATAGGATAGTGT-CTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* * *
51641095 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATTTCTGGCTTCAATTTGATGCG
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGA--TC---CTT-TATTT--T--A
* * *
51641149 ATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* ** * * *
51641193 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATAGTGT-CTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* * ** **
51641236 ATCTACTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGAAAATCTTCG
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATC-CT--TTAT-TTTA
* * * * ***
51641284 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-CC-TGA-TGCG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
* * *
51641325 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
51641369 ATCTGCTCCACTGTAACTTCAGGGAGATA
1 ATCTGCTCCACTGTAACTTCAGGGAGATA
51641398 GGACAGTGTC
Statistics
Matches: 466, Mismatches: 108, Indels: 112
0.68 0.16 0.16
Matches are distributed among these distances:
41 31 0.07
42 6 0.01
43 70 0.15
44 204 0.44
45 4 0.01
46 3 0.01
47 2 0.00
48 40 0.09
49 7 0.02
50 4 0.01
51 3 0.01
52 4 0.01
53 3 0.01
54 79 0.17
55 6 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCCTTTATTTTA
Found at i:51640835 original size:142 final size:141
Alignment explanation
Indices: 51640574--51641273 Score: 1129
Period size: 142 Copynumber: 4.9 Consensus size: 141
51640564 GAGATAAGAC
* *
51640574 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCATTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * **
51640639 TAATCTTAGGGAGATAGGATTACTGGTTTCAAGGTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
51640704 TCTGGCTTCAAT
130 TCTGGCTTCAAT
*
51640716 CTGACGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
51640781 TAATCTCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCTCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
51640846 TCTGGCTTCAAT
130 TCTGGCTTCAAT
51640858 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
51640923 TAATCTCAGGGAGATTGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
51640988 TTTGGCTTCAAT
130 TCTGGCTTCAAT
* *
51641000 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCCCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
51641065 TAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
66 TAATC-TCAGGGAGATAGGATTACTG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
51641128 TTCTGGCTTCAAT
129 TTCTGGCTTCAAT
* * *
51641141 TTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
51641206 TAA-CTTCAGGGAGATAGGA-TAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGAT
66 TAATC-TCAGGGAGATAGGATTACTG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
*
51641269 CTCTG
129 TTCTG
51641274 AAAATCTTCG
Statistics
Matches: 532, Mismatches: 24, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
140 1 0.00
141 182 0.34
142 349 0.66
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (141 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTT
CTGGCTTCAAT
Found at i:51641117 original size:43 final size:43
Alignment explanation
Indices: 51641008--51641444 Score: 245
Period size: 44 Copynumber: 9.8 Consensus size: 43
51640998 ATCTGATGCG
* * * * * * *
51641008 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTCA
* * *
51641052 ATCTGCCCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTCA
* * *
51641095 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATTTCTGGCTTCA
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGA-TACTGTCTTCA
* * * * * *
51641139 ATTTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTATTTTA
1 A--T-CT--G--CT-C-C-ACTGTAACTTCAGGGAGATAAGATACTGT-CTTCA
* *
51641193 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTCA
* * * *
51641236 ATCTACTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGAAAATCTTCG
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT-ACTG----TCTTCA
* * * * * * *
51641284 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTCA
* * * * * * *
51641325 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTCA
* * *
51641369 ATCTGCTCCACTGTAACTTCAGGGAGATAGGACAGTGTCTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTCA
**
51641412 ATCTGCTCTGCTGTAA-TCTCAGGGAGATAAGAT
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT
51641445 CTGAAAATCT
Statistics
Matches: 301, Mismatches: 67, Indels: 51
0.72 0.16 0.12
Matches are distributed among these distances:
41 31 0.10
42 6 0.02
43 91 0.30
44 96 0.32
45 1 0.00
46 5 0.02
47 3 0.01
48 33 0.11
49 2 0.01
51 3 0.01
52 2 0.01
53 4 0.01
54 23 0.08
55 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTCA
Found at i:51641342 original size:176 final size:174
Alignment explanation
Indices: 51641142--51641457 Score: 578
Period size: 176 Copynumber: 1.8 Consensus size: 174
51641132 GGCTTCAATT
*
51641142 TGATGCGATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
*
51641207 AACTTCAGGGAGATAGGATAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTC
66 AACTTCAGGGAGATAGGACAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGA--TC
51641272 TGAAAATCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACC
129 TGAAAATCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACC
51641318 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
* *
51641383 AACTTCAGGGAGATAGGACAGTGTCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATCTG
66 AACTTCAGGGAGATAGGACAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTG
51641448 AAAATCTTCG
131 AAAATCTTCG
51641458 ATGGTCTGTT
Statistics
Matches: 136, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
174 14 0.10
176 122 0.90
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (174 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGT
AACTTCAGGGAGATAGGACAGTGTCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTG
AAAATCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACC
Found at i:51642679 original size:7 final size:7
Alignment explanation
Indices: 51642667--51642727 Score: 90
Period size: 7 Copynumber: 9.0 Consensus size: 7
51642657 TTATCCTCTC
51642667 CATTTTT
1 CATTTTT
51642674 CATTTTT
1 CATTTTT
51642681 CA-TTTT
1 CATTTTT
*
51642687 CGTTTTT
1 CATTTTT
51642694 CATTTTT
1 CATTTTT
*
51642701 CA-TTCT
1 CATTTTT
51642707 CATTTTT
1 CATTTTT
51642714 CATTTTT
1 CATTTTT
51642721 CATTTTT
1 CATTTTT
51642728 TTTGACTCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
6 10 0.21
7 38 0.79
ACGTcount: A:0.13, C:0.16, G:0.02, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:51642692 original size:13 final size:14
Alignment explanation
Indices: 51642667--51642727 Score: 90
Period size: 13 Copynumber: 4.5 Consensus size: 14
51642657 TTATCCTCTC
51642667 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
51642681 CA-TTTTCGTTTTT
1 CATTTTTCATTTTT
*
51642694 CATTTTTCA-TTCT
1 CATTTTTCATTTTT
51642707 CATTTTTCATTTTT
1 CATTTTTCATTTTT
51642721 CATTTTT
1 CATTTTT
51642728 TTTGACTCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
13 24 0.59
14 17 0.41
ACGTcount: A:0.13, C:0.16, G:0.02, T:0.69
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:51642694 original size:20 final size:20
Alignment explanation
Indices: 51642667--51642726 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
51642657 TTATCCTCTC
51642667 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
* *
51642687 CGTTTTTCATTTTTCATTCT
1 CATTTTTCATTTTTCATTTT
51642707 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
51642727 TTTTGACTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.13, C:0.17, G:0.02, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTTTTCATTTT
Found at i:51642697 original size:27 final size:27
Alignment explanation
Indices: 51642667--51642727 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
51642657 TTATCCTCTC
* *
51642667 CATTTTTCATTTTTCA-TTTTCGTTTTT
1 CATTTTTCA-TTCTCATTTTTCATTTTT
51642694 CATTTTTCATTCTCATTTTTCATTTTT
1 CATTTTTCATTCTCATTTTTCATTTTT
51642721 CATTTTT
1 CATTTTT
51642728 TTTGACTCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.13, C:0.16, G:0.02, T:0.69
Consensus pattern (27 bp):
CATTTTTCATTCTCATTTTTCATTTTT
Found at i:51643659 original size:45 final size:46
Alignment explanation
Indices: 51643593--51643681 Score: 103
Period size: 47 Copynumber: 1.9 Consensus size: 46
51643583 TCTCTCCTTT
51643593 TTATTTTCATTTTGACCTTGA-TAGATTTTTCT-TTCTTTTTTTCTC
1 TTATTTTCATTTTGACCTTGATTAGATTTTTCTCTT-TTTTTTTCTC
** *
51643638 TTATTTT-ATTTTGATTTTTGATTTTGATTTTTCTCTTTTTTTTT
1 TTATTTTCATTTTGA-CCTTGA-TTAGATTTTTCTCTTTTTTTTT
51643682 ATTGAACCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
44 7 0.19
45 11 0.30
47 17 0.46
48 2 0.05
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.71
Consensus pattern (46 bp):
TTATTTTCATTTTGACCTTGATTAGATTTTTCTCTTTTTTTTTCTC
Found at i:51648151 original size:24 final size:25
Alignment explanation
Indices: 51648115--51648163 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
51648105 ACAAATTAAA
* *
51648115 ATAATAATTTAATATATTTTAAAACC
1 ATAATAA-TTAATAAATTTAAAAACC
51648141 ATAATAA-TAATAAATTTAAAAAC
1 ATAATAATTAATAAATTTAAAAAC
51648164 ACCCTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
26 7 0.33
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATAATTAATAAATTTAAAAACC
Found at i:51648974 original size:19 final size:22
Alignment explanation
Indices: 51648949--51649002 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 22
51648939 TGAACAAAAA
51648949 GGAAAGAAGAAAA-AA-GAATC
1 GGAAAGAAGAAAATAACGAATC
51648969 -GAAAGAA-AAAATAACCGAATC
1 GGAAAGAAGAAAATAA-CGAATC
*
51648990 GGATAGAAGAAAA
1 GGAAAGAAGAAAA
51649003 GAAAAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.14
19 9 0.32
21 5 0.18
22 6 0.21
23 4 0.14
ACGTcount: A:0.63, C:0.07, G:0.22, T:0.07
Consensus pattern (22 bp):
GGAAAGAAGAAAATAACGAATC
Found at i:51653950 original size:139 final size:139
Alignment explanation
Indices: 51653718--51653998 Score: 553
Period size: 139 Copynumber: 2.0 Consensus size: 139
51653708 TACAGGCTCG
51653718 AATCGACATGGATGAACTTTCAAGCTCGGACCTGTTTTGCCAACTCTAATGGTTAAGTCATTGCT
1 AATCGACATGGATGAACTTTCAAGCTCGGACCTGTTTTGCCAACTCTAATGGTTAAGTCATTGCT
*
51653783 TTCTTTATTTAAAAAAAAAAAGTAAAAAAGACAATGTTCTTCTAAAATATAAGTTGAAATTCATC
66 TTCTTTATTTAAAAAAAAAAAGCAAAAAAGACAATGTTCTTCTAAAATATAAGTTGAAATTCATC
51653848 CCAATTATA
131 CCAATTATA
51653857 AATCGACATGGATGAACTTTCAAGCTCGGACCTGTTTTGCCAACTCTAATGGTTAAGTCATTGCT
1 AATCGACATGGATGAACTTTCAAGCTCGGACCTGTTTTGCCAACTCTAATGGTTAAGTCATTGCT
51653922 TTCTTTATTTAAAAAAAAAAAGCAAAAAAGACAATGTTCTTCTAAAATATAAGTTGAAATTCATC
66 TTCTTTATTTAAAAAAAAAAAGCAAAAAAGACAATGTTCTTCTAAAATATAAGTTGAAATTCATC
51653987 CCAATTATA
131 CCAATTATA
51653996 AAT
1 AAT
51653999 TTTAAAATAT
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 141 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (139 bp):
AATCGACATGGATGAACTTTCAAGCTCGGACCTGTTTTGCCAACTCTAATGGTTAAGTCATTGCT
TTCTTTATTTAAAAAAAAAAAGCAAAAAAGACAATGTTCTTCTAAAATATAAGTTGAAATTCATC
CCAATTATA
Found at i:51654498 original size:15 final size:16
Alignment explanation
Indices: 51654480--51654531 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 16
51654470 TTTTTTAATT
51654480 TAAAAATT-TTAAAAA
1 TAAAAATTATTAAAAA
51654495 TAAAAATTATTAAAAA
1 TAAAAATTATTAAAAA
* *
51654511 GTATAAAAATATAAAAAA
1 -TA-AAAATTATTAAAAA
51654529 TAA
1 TAA
51654532 TATTTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 8 0.25
16 8 0.25
17 4 0.12
18 12 0.38
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
TAAAAATTATTAAAAA
Found at i:51654919 original size:15 final size:15
Alignment explanation
Indices: 51654899--51654927 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51654889 TTTATTTAAG
51654899 TAGATAAATCTTAGT
1 TAGATAAATCTTAGT
51654914 TAGATAAATCTTAG
1 TAGATAAATCTTAG
51654928 AATAAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
TAGATAAATCTTAGT
Found at i:51659942 original size:40 final size:40
Alignment explanation
Indices: 51659898--51660085 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
51659888 GCAAACACAT
* * *
51659898 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
51659938 TTGCCTTCGGGTCTTAACCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51659978 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
51660018 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51660058 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
51660086 TCCAGTGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:51679810 original size:20 final size:22
Alignment explanation
Indices: 51679787--51679830 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
51679777 TTTTAATTAA
*
51679787 ATAAATAT-AATT-TTTTATAT
1 ATAAATATGAATTATTTTAAAT
*
51679807 ATAAGTATGAATTATTTTAAAT
1 ATAAATATGAATTATTTTAAAT
51679829 AT
1 AT
51679831 GATAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
ATAAATATGAATTATTTTAAAT
Found at i:51711896 original size:50 final size:50
Alignment explanation
Indices: 51711817--51711962 Score: 170
Period size: 50 Copynumber: 2.9 Consensus size: 50
51711807 TTTCCTGTAC
* * **
51711817 TGCCAATGCCATATCCCAGATAT-GATCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATAG-TCTTACATGGGACCTCTCATATCGG
* * * *
51711867 TGCCCATGCAATGTCCCAGACATAGTCTTACGA-GGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATAGTCTTAC-ATGGGACCTCTCATATCGG
* *
51711917 TGCCAATGCCATGTCCCAGACATGGTTTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATA
51711963 ACCTCAATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.01
50 77 0.96
51 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATATCGG
Found at i:51723393 original size:85 final size:85
Alignment explanation
Indices: 51723250--51723423 Score: 330
Period size: 85 Copynumber: 2.0 Consensus size: 85
51723240 AAAAAATAAT
*
51723250 AATAACATAAACGCAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGT
1 AATAACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGT
51723315 TAAATTTTATATAAATAAAA
66 TAAATTTTATATAAATAAAA
*
51723335 AATAACATAAACACAACACGAATATACAGATGTCTCCAAACCTATTTAATACAAATTAAATGTGT
1 AATAACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGT
51723400 TAAATTTTATATAAATAAAA
66 TAAATTTTATATAAATAAAA
51723420 AATA
1 AATA
51723424 CCTTAACCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (85 bp):
AATAACATAAACACAACACGAATATACAAATGTCTCCAAACCTATTTAATACAAATTAAATGTGT
TAAATTTTATATAAATAAAA
Found at i:51728933 original size:31 final size:32
Alignment explanation
Indices: 51728870--51728938 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
51728860 TATCATAATT
*
51728870 TAAATTTATTCAAAAAGTACAAAAAATTAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATTAAAA
* *
51728902 TTAATTAATTTAAAAA-TAC-AAAAATTAAAAA
1 TAAATTAATTCAAAAAGTACAAAAAATT-AAAA
51728933 TAAATT
1 TAAATT
51728939 TTAATTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 7 0.22
31 12 0.38
32 13 0.41
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (32 bp):
TAAATTAATTCAAAAAGTACAAAAAATTAAAA
Found at i:51729042 original size:22 final size:22
Alignment explanation
Indices: 51729017--51729068 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
51729007 AATAAATTAT
*
51729017 AAATTAAAAATGCTATAA-CTTG
1 AAATTAAAAAAGCT-TAATCTTG
51729039 AAATTTAAAAAAGCTTAATCTTG
1 AAA-TTAAAAAAGCTTAATCTTG
*
51729062 GAATTAA
1 AAATTAA
51729069 GCCAAAGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.33
Consensus pattern (22 bp):
AAATTAAAAAAGCTTAATCTTG
Found at i:51731628 original size:50 final size:50
Alignment explanation
Indices: 51731565--51731798 Score: 238
Period size: 50 Copynumber: 4.6 Consensus size: 50
51731555 TGTCATATCA
* ** * * * *
51731565 CAGATATGGTCTTACATGGGAGTTCTCATATAAGTGCCCATGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* ** *
51731615 CAAACATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* *
51731665 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
* * * *
51731715 CAGACATGGTCTTACATGAGACCTCTCATAATCTCAATAATGCTAATGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTC---ATCTC---AGTGCCAACGCCATGTCC
*
51731771 CAGACATGGTCATACATGGGA--TCTCATC
1 CAGACATGGTCTTACATGGGACCTCTCATC
51731799 CTCTTAATGT
Statistics
Matches: 153, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
50 109 0.71
51 3 0.02
53 5 0.03
54 4 0.03
56 32 0.21
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
CAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCC
Found at i:51740576 original size:27 final size:27
Alignment explanation
Indices: 51740545--51740671 Score: 168
Period size: 27 Copynumber: 4.7 Consensus size: 27
51740535 CCTAATATTT
*
51740545 GTAAAATGA-CTGTAATACCCTTGTAGG
1 GTAAAATGATC-GTAATACCCCTGTAGG
* *
51740572 GTAAAATAATCGTAATGCCCCTGTAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
* *
51740599 GTAAACTGATCGTAAT-GCCCTGTAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
* *
51740625 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGATCGTAATACCCCTGTAGG
51740652 GTAAAATGATCGTAATACCC
1 GTAAAATGATCGTAATACCC
51740672 GTAGAGGGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 23 0.26
27 63 0.72
28 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAAAATGATCGTAATACCCCTGTAGG
Found at i:51740623 original size:53 final size:53
Alignment explanation
Indices: 51740545--51740675 Score: 176
Period size: 53 Copynumber: 2.5 Consensus size: 53
51740535 CCTAATATTT
* * *
51740545 GTAAAATGA-CTGTAATACCCTTGTAGGGTAAAATAATCGTAATGCCCCTGTAGG
1 GTAAAATGATC-GTAATACCC-TGTAGGGTAAAATAACCGTAATACCCCTATAGG
* * *
51740599 GTAAACTGATCGTAATGCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGATCGTAATACCCTGTAGGGTAAAATAACCGTAATACCCCTATAGG
51740652 GTAAAATGATCGTAATACCC-GTAG
1 GTAAAATGATCGTAATACCCTGTAG
51740676 AGGGTAAATA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.06
53 47 0.69
54 16 0.24
55 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (53 bp):
GTAAAATGATCGTAATACCCTGTAGGGTAAAATAACCGTAATACCCCTATAGG
Found at i:51740733 original size:23 final size:23
Alignment explanation
Indices: 51740703--51740746 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
51740693 TGCCCCTCGA
51740703 GGTTAAATGATTGATTTGTCTAT
1 GGTTAAATGATTGATTTGTCTAT
*
51740726 GGTTAAATGGTTGATTTGTCT
1 GGTTAAATGATTGATTTGTCT
51740747 GTGTTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.48
Consensus pattern (23 bp):
GGTTAAATGATTGATTTGTCTAT
Found at i:51740783 original size:24 final size:24
Alignment explanation
Indices: 51740737--51740789 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51740727 GTTAAATGGT
*
51740737 TGATTTGTCTGTGTTTGGTATGAC
1 TGATTTGTCTGTGTTTGGAATGAC
51740761 TGATTTGTCTGTGATTT-GAATGAC
1 TGATTTGTCTGTG-TTTGGAATGAC
*
51740785 CGATT
1 TGATT
51740790 CTGAGCATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.47
Consensus pattern (24 bp):
TGATTTGTCTGTGTTTGGAATGAC
Found at i:51741002 original size:32 final size:31
Alignment explanation
Indices: 51740961--51741133 Score: 179
Period size: 32 Copynumber: 5.5 Consensus size: 31
51740951 GCTGCGATGC
51740961 TACTGATGGCTTTGTGCCGATCATATTAGCGT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
*
51740993 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
* *
51741025 TACTGATGACTTTGTGCCGATCATATTATCAT
1 TACTGATGGCTTTGTGCCGATCATATTA-CGT
* ** * * *
51741057 TACTGATGTCTGCGTGCCTATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTAC-GT
* *
51741089 TATTGATGGCTTTGTGCCAATCATATTAC-T
1 TACTGATGGCTTTGTGCCGATCATATTACGT
*
51741119 GTACTTATGG-TTTGT
1 -TACTGATGGCTTTGT
51741134 AGCCATTCTT
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
30 5 0.04
31 8 0.07
32 104 0.89
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATATTACGT
Found at i:51741041 original size:64 final size:64
Alignment explanation
Indices: 51740959--51741116 Score: 199
Period size: 64 Copynumber: 2.5 Consensus size: 64
51740949 TTGCTGCGAT
* ** *
51740959 GCTACTGATGGCTTTGTGCCGATCATATTAGCGTTACTGATGGCTTTGTACCGATCATATTACC
1 GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
* * * * * * *
51741023 GTTACTGATGACTTTGTGCCGATCATATTATCATTACTGATGTCTGCGTGCCTATCATATCACT
1 GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
* *
51741087 GCTATTGATGGCTTTGTGCCAATCATATTA
1 GCTACTGATGGCTTTGTGCCGATCATATTA
51741117 CTGTACTTAT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 79 1.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (64 bp):
GCTACTGATGGCTTTGTGCCGATCATATTAGCATTACTGATGGCTGCGTACCGATCATATCACC
Found at i:51743619 original size:21 final size:21
Alignment explanation
Indices: 51743573--51743627 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
51743563 TACTGTCTCA
* *
51743573 AATGTTGTGACTTCTAATGTTG
1 AATGTTGCGAC-TCTAAGGTTG
51743595 AATGTTGCGACTCTAAGGTCT-
1 AATGTTGCGACTCTAAGGT-TG
*
51743616 AATGTTACGACT
1 AATGTTGCGACT
51743628 TCTTGCTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (21 bp):
AATGTTGCGACTCTAAGGTTG
Found at i:51750959 original size:19 final size:19
Alignment explanation
Indices: 51750937--51751008 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
51750927 AAAAATACAA
51750937 AAAAATTCAAAATCATTTT
1 AAAAATTCAAAATCATTTT
*
51750956 AAAAAATTCAAAATAAATTTT
1 -AAAAATTCAAAAT-CATTTT
51750977 -AAAATTCAAAA-CATTTAT
1 AAAAATTCAAAATCATTT-T
51750995 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
51751009 TTATATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 17 0.38
20 18 0.40
21 5 0.11
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATTCAAAATCATTTT
Found at i:51751010 original size:18 final size:19
Alignment explanation
Indices: 51750937--51751013 Score: 72
Period size: 19 Copynumber: 4.1 Consensus size: 19
51750927 AAAAATACAA
51750937 AAAAATTCAAAATCATTT-T
1 AAAAATTCAAAA-CATTTAT
*
51750956 AAAAAATTCAAAATAAATTT-T
1 -AAAAATTC-AAA-ACATTTAT
51750977 -AAAATTCAAAACATTTAT
1 AAAAATTCAAAACATTTAT
*
51750995 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAACATTTAT
51751013 A
1 A
51751014 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
17 5 0.10
18 11 0.22
19 17 0.34
20 8 0.16
21 8 0.16
22 1 0.02
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAACATTTAT
Found at i:51751042 original size:19 final size:21
Alignment explanation
Indices: 51751018--51751061 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
51751008 TTTATATTTT
*
51751018 TAAAAATTTATAAA-AAT-TA
1 TAAAAAATTATAAAGAATATA
*
51751037 TAAAAAATTCTAAAGAATATA
1 TAAAAAATTATAAAGAATATA
51751058 TAAA
1 TAAA
51751062 GAAAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 3 0.14
21 6 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAAAAATTATAAAGAATATA
Found at i:51752483 original size:18 final size:19
Alignment explanation
Indices: 51752449--51752497 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
51752439 AATTTTTTAT
*
51752449 TAAATTATTTATGTAA-TA
1 TAAATTATTTATATAATTA
*
51752467 TAAATTATTTTTATAATTA
1 TAAATTATTTATATAATTA
51752486 TATTAATTATTT
1 TA--AATTATTT
51752498 GGATTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 14 0.54
19 4 0.15
21 8 0.31
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TAAATTATTTATATAATTA
Done.