Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 161 of 222
Found at i:51752967 original size:13 final size:13
Alignment explanation
Indices: 51752949--51752981 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51752939 TGACAAATTT
51752949 TAATATTTTTAAA
1 TAATATTTTTAAA
*
51752962 TAATATATTTAAA
1 TAATATTTTTAAA
51752975 TAA-ATTT
1 TAATATTT
51752982 AAATGATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATATTTTTAAA
Found at i:51752999 original size:28 final size:28
Alignment explanation
Indices: 51752969--51753038 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
51752959 AAATAATATA
51752969 TTTAAATAAATTTA-AATGATTTTTACTAT
1 TTTAAATAAATTTACAAT--TTTTTACTAT
**
51752998 TTTTTATAAATTTACAATTTTTTAC-AT
1 TTTAAATAAATTTACAATTTTTTACTAT
51753025 TTTAAAATAAATTT
1 TTT-AAATAAATTT
51753039 TTTAATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.14
28 15 0.43
29 12 0.34
30 3 0.09
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (28 bp):
TTTAAATAAATTTACAATTTTTTACTAT
Found at i:51753039 original size:21 final size:18
Alignment explanation
Indices: 51753013--51753053 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
51753003 ATAAATTTAC
51753013 AATTTTTTACATTTTAAAATA
1 AATTTTTTA-A-TTT-AAATA
51753034 AATTTTTTAATTTAAATA
1 AATTTTTTAATTTAAATA
51753052 AA
1 AA
51753054 AAACATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 3 0.15
20 1 0.05
21 9 0.45
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTTTTTAATTTAAATA
Found at i:51753543 original size:11 final size:11
Alignment explanation
Indices: 51753527--51753558 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
51753517 CACTATTCAC
51753527 CTAAACCCAAT
1 CTAAACCCAAT
*
51753538 CTAAACCAAAT
1 CTAAACCCAAT
51753549 CTAAACCCAA
1 CTAAACCCAA
51753559 GTATTCAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (11 bp):
CTAAACCCAAT
Found at i:51753575 original size:18 final size:18
Alignment explanation
Indices: 51753552--51753594 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51753542 ACCAAATCTA
**
51753552 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
51753570 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
51753588 AACCCAA
1 AACCCAA
51753595 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:51753712 original size:9 final size:9
Alignment explanation
Indices: 51753698--51753764 Score: 84
Period size: 9 Copynumber: 7.4 Consensus size: 9
51753688 ATAGTGATTC
51753698 AATTCGGTT
1 AATTCGGTT
51753707 AATTCGGTT
1 AATTCGGTT
51753716 AATTCGAG-T
1 AATTCG-GTT
*
51753725 AATTCGGGT
1 AATTCGGTT
*
51753734 AAGTT-GGCT
1 AA-TTCGGTT
51753743 AATTCGGTT
1 AATTCGGTT
51753752 AATTCGGTT
1 AATTCGGTT
51753761 AATT
1 AATT
51753765 TTTAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
8 3 0.06
9 46 0.88
10 3 0.06
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:51757741 original size:14 final size:14
Alignment explanation
Indices: 51757722--51757749 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51757712 GCCTTTTAAG
51757722 GAACTATAGGGACA
1 GAACTATAGGGACA
51757736 GAACTATAGGGACA
1 GAACTATAGGGACA
51757750 TGTGACTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (14 bp):
GAACTATAGGGACA
Found at i:51757882 original size:29 final size:29
Alignment explanation
Indices: 51757840--51757898 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
51757830 CAAAGTTGGA
51757840 AGCTTTAATGGAACAAATGGTTACAAGGC
1 AGCTTTAATGGAACAAATGGTTACAAGGC
51757869 AGCTTTAATGGAACAAATGGTTACAAGGC
1 AGCTTTAATGGAACAAATGGTTACAAGGC
51757898 A
1 A
51757899 ACAAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCTTTAATGGAACAAATGGTTACAAGGC
Found at i:51760167 original size:37 final size:37
Alignment explanation
Indices: 51760117--51760191 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
51760107 GGAGGAAAAT
* *
51760117 GAGAGGATGGGAATTTAGTTGATGGCTATGGTGACTA
1 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
51760154 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
1 GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
51760191 G
1 G
51760192 CCTATAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.07, G:0.39, T:0.27
Consensus pattern (37 bp):
GAGAGGATGGGAATTTAGTTGATGGCTACGGAGACTA
Found at i:51761669 original size:28 final size:28
Alignment explanation
Indices: 51761629--51761683 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
51761619 TTTCTTACGT
*
51761629 CCCGACGGACTT-ACCCTGTGTTTATTGC
1 CCCGACGGACTTAACCC-GTATTTATTGC
*
51761657 CCCGGCGGACTTAACCCGTATTTATTG
1 CCCGACGGACTTAACCCGTATTTATTG
51761684 TCTCAACGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.16, C:0.31, G:0.22, T:0.31
Consensus pattern (28 bp):
CCCGACGGACTTAACCCGTATTTATTGC
Found at i:51761770 original size:66 final size:66
Alignment explanation
Indices: 51761684--51761835 Score: 169
Period size: 66 Copynumber: 2.3 Consensus size: 66
51761674 GTATTTATTG
* * * * *
51761684 TCTCAACGGAATATCTCTATTTTGTGTTTGCTATCCCAGAAAACTATCTCTATTATGTGTTTACT
1 TCTCAACGGACTATCTCTATTATATGTTTACTATCCCAGAAAACTATCTCTATTATATGTTTACT
51761749 A
66 A
* * * *** * * *
51761750 TCTCAGCGGACTATCTCTATTATATGTTTATTGTCCCAGTGGACTATCTTTGTTTTATGTTTACT
1 TCTCAACGGACTATCTCTATTATATGTTTACTATCCCAGAAAACTATCTCTATTATATGTTTACT
51761815 A
66 A
*
51761816 TCCCAACGGACTATCTCTAT
1 TCTCAACGGACTATCTCTAT
51761836 GGATGTAGTG
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (66 bp):
TCTCAACGGACTATCTCTATTATATGTTTACTATCCCAGAAAACTATCTCTATTATATGTTTACT
A
Found at i:51761827 original size:33 final size:33
Alignment explanation
Indices: 51761690--51761835 Score: 148
Period size: 33 Copynumber: 4.4 Consensus size: 33
51761680 ATTGTCTCAA
* * * *
51761690 CGGAATATCTCTATTTTGTGTTTGCTATCCCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
*** * *
51761723 AAAACTATCTCTATTATGTGTTTACTATCTCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
* *
51761756 CGGACTATCTCTATTATATGTTTATTGTCCCAG
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
* * * * *
51761789 TGGACTATCTTTGTTTTATGTTTACTATCCCAA
1 CGGACTATCTCTATTATATGTTTACTATCCCAG
51761822 CGGACTATCTCTAT
1 CGGACTATCTCTAT
51761836 GGATGTAGTG
Statistics
Matches: 89, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 89 1.00
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.43
Consensus pattern (33 bp):
CGGACTATCTCTATTATATGTTTACTATCCCAG
Found at i:51766355 original size:13 final size:13
Alignment explanation
Indices: 51766298--51766409 Score: 91
Period size: 13 Copynumber: 8.3 Consensus size: 13
51766288 TGATATACAA
*
51766298 AAATGATTATGTG
1 AAATGATTATATG
51766311 TTAAATG-TGTATATG
1 --AAATGAT-TATATG
* *
51766326 AAATGATAAAAATG
1 AAATGAT-TATATG
* *
51766340 AAATGTTTAGATG
1 AAATGATTATATG
* *
51766353 AAATGGTTATACG
1 AAATGATTATATG
51766366 AAATGATTATATG
1 AAATGATTATATG
*
51766379 AAATGCTTATATG
1 AAATGATTATATG
*
51766392 AAATGGTTATATAG
1 AAATGATTATAT-G
51766406 AAAT
1 AAAT
51766410 AGATGTATAA
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
13 53 0.66
14 17 0.21
15 10 0.12
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.36
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:51774086 original size:22 final size:21
Alignment explanation
Indices: 51774061--51774104 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
51774051 ATCATACAAC
* *
51774061 ATCATAACATTTAAGGCCCTAA
1 ATCA-AACATTCAAGACCCTAA
*
51774083 ATCAAGCATTCAAGACCCTAA
1 ATCAAACATTCAAGACCCTAA
51774104 A
1 A
51774105 AATAGCTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.43, C:0.25, G:0.09, T:0.23
Consensus pattern (21 bp):
ATCAAACATTCAAGACCCTAA
Found at i:51786053 original size:5 final size:5
Alignment explanation
Indices: 51786043--51786067 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51786033 CTTTATTTGG
51786043 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
51786068 GTATGTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:51786381 original size:50 final size:49
Alignment explanation
Indices: 51786327--51786673 Score: 221
Period size: 50 Copynumber: 6.9 Consensus size: 49
51786317 TGTAATGTCG
** *
51786327 GGGAAGTAAGATTCATCGTTGTGGTTTCAATCTGTTCCACTGCACCGTCT
1 GGGAAGTAAGATTCGCCGTTGTGGTTT-AATCTGTTCAACTGCACCGTCT
* * * * * ** *
51786377 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTTTAACTGTAGTGTCG
1 GGGAAGTAAGATTCGCCGTTGT-GGTTTAATC--TGTTCAACTGCACCGTCT
* ** * * *
51786429 GGGAAGCAAGATTCGCCCATGTGGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGG-TTTAATCTGTTCAACTGCACCGTCT
* ** * * * ** *
51786479 AGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGT-GGTTTAATCTGTTCAACTGCACCGTCT
* * * *
51786529 GGGAAGCAAGATTCGCCATTGTGGCTTTAGTCTGTTCTACTGCACC--CT
1 GGGAAGTAAGATTCGCCGTTGTGG-TTTAATCTGTTCAACTGCACCGTCT
** * * * * ** *
51786577 GGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAATTGCAATGTCA
1 GGGAAGTAAGATTCGCCGTTGT-GGTTTAATCTGTTCAACTGCACCGTCT
* * *
51786627 GGGACGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCACCG
1 GGGAAGTAAGATTCGCCGTTGT-GGTTTAATCTGTTCAACTGCACCG
51786674 CAATCTTCAA
Statistics
Matches: 215, Mismatches: 73, Indels: 18
0.70 0.24 0.06
Matches are distributed among these distances:
48 35 0.16
49 2 0.01
50 137 0.64
51 6 0.03
52 35 0.16
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (49 bp):
GGGAAGTAAGATTCGCCGTTGTGGTTTAATCTGTTCAACTGCACCGTCT
Found at i:51786440 original size:102 final size:98
Alignment explanation
Indices: 51786303--51786674 Score: 467
Period size: 98 Copynumber: 3.7 Consensus size: 98
51786293 ATCTGTAACA
** * * **
51786303 TTAATCTGCTTAACTGTAATGTCGGGGAAGTAAGATTCATCGTTGTGGTTTCAATCTGTTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGTTT-AATCTGTTCCACT
51786368 GCACCGTCTGGGAAGTAAGATTCGCTGTTGTAGCT
65 GCACCG-CTGGGAAGTAAGATTCGCTGTTGTAGCT
* * ** *
51786403 TTAATCTTTTTTTAACTGTAGTGTCGGGGAAGCAAGATTCGCCCATGTGGCTTCAATCTGTTCCA
1 TTAATC--TTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGG-TTTAATCTGTTCCA
* *
51786468 CTGCACCGCCTAGGAAGTAAGATTCGTTGTTGTAGCT
63 CTGCACCG-CTGGGAAGTAAGATTCGCTGTTGTAGCT
* * *
51786505 TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCATTGTGGCTTTAGTCTGTTCTACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGG-TTTAATCTGTTCCACT
*
51786570 GCACC-CTGGGAAGTAAGATTCGCTATTGTAGCT
65 GCACCGCTGGGAAGTAAGATTCGCTGTTGTAGCT
* * * * *
51786603 TTAATCTTTTTAATTGCAATGTCAGGGACGTAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACT
1 TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT-GGTTTAATCTGTTCCACT
51786668 GCACCGC
65 GCACCGC
51786675 AATCTTCAAC
Statistics
Matches: 237, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
98 85 0.36
99 2 0.01
100 63 0.27
102 85 0.36
103 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (98 bp):
TTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGTTTAATCTGTTCCACTG
CACCGCTGGGAAGTAAGATTCGCTGTTGTAGCT
Found at i:51788186 original size:48 final size:49
Alignment explanation
Indices: 51788134--51788229 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 49
51788124 TTACTTATTA
* *
51788134 TTTTTTT-GGACTCAAAGCGCCTTTTGCGGGTTTTCACCTTGG-CCCTT
1 TTTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTT
51788181 TTTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTT
1 TTTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTT
51788230 CTCCTCCTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 7 0.16
48 33 0.73
49 5 0.11
ACGTcount: A:0.12, C:0.25, G:0.21, T:0.42
Consensus pattern (49 bp):
TTTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTT
Found at i:51788247 original size:49 final size:46
Alignment explanation
Indices: 51788146--51788247 Score: 107
Period size: 48 Copynumber: 2.1 Consensus size: 46
51788136 TTTTTGGACT
* ** *
51788146 CAAAGCGCCTTTTGCGGGTTTTCACCTTGGCCCTTTTTTTTTAGGAA
1 CAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCCTTTTCCTTCAGG-A
51788193 TCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCCCTTCTCCTCCTTCAGG-
1 -CAAAGCGCCCTTTGCGGGTTTTCACCTTGG-CCCTT-T--TCCTTCAGGA
51788243 CAAAG
1 CAAAG
51788248 TAATTCTTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
48 29 0.63
49 10 0.22
50 1 0.02
52 6 0.13
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (46 bp):
CAAAGCGCCCTTTGCGGGTTTTCACCTTGGCCCTTTTCCTTCAGGA
Found at i:51789091 original size:19 final size:18
Alignment explanation
Indices: 51789069--51789125 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 18
51789059 TTGATTTTGA
*
51789069 TTTTGATTTTTTCTTTTTT
1 TTTTG-TTTTTTCTTTATT
*
51789088 TTTTCTTTTTTTCTTTATT
1 TTTT-GTTTTTTCTTTATT
51789107 TTTTGTTTTTT-TTTATT
1 TTTTGTTTTTTCTTTATT
51789124 TT
1 TT
51789126 CATTTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.24
18 6 0.18
19 20 0.59
ACGTcount: A:0.05, C:0.05, G:0.04, T:0.86
Consensus pattern (18 bp):
TTTTGTTTTTTCTTTATT
Found at i:51789145 original size:48 final size:47
Alignment explanation
Indices: 51789077--51789188 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
51789067 GATTTTGATT
* * *
51789077 TTTTCTTTTTTT-TTTCT-TTTTTTCTTTATTTTTTGT-TTT-TTTTTA
1 TTTTCTTTTTTTATTT-TGTTTTTTATTGATTTTTT-TATTTAATTTTA
*
51789122 TTTTCATTTTTTTATTTTGTTTTTTATTGATTTTTTTATTTCAATTTTC
1 TTTTC-TTTTTTTATTTTGTTTTTTATTGATTTTTTTATTT-AATTTTA
51789171 TTTTCTTTTTTTATTTTG
1 TTTTCTTTTTTTATTTTG
51789189 ATTGTGATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
45 5 0.09
46 9 0.16
47 21 0.37
48 13 0.23
49 9 0.16
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (47 bp):
TTTTCTTTTTTTATTTTGTTTTTTATTGATTTTTTTATTTAATTTTA
Found at i:51789146 original size:30 final size:28
Alignment explanation
Indices: 51789077--51789187 Score: 96
Period size: 30 Copynumber: 3.7 Consensus size: 28
51789067 GATTTTGATT
*
51789077 TTTTCTTTTTTTTTTCTTTTTTTCTTTA
1 TTTTCTTTTTTTTTTATTTTTTTCTTTA
* *
51789105 TTTTTTGTTTTTTTTTATTTTCATTTTTTTA
1 TTTTCT-TTTTTTTTTATTTT--TTTCTTTA
* * * *
51789136 TTTTGTTTTTTATTGATTTTTTTATTTCAA
1 TTTTCTTTTTTTTTTATTTTTTTCTTT--A
51789166 TTTTCTTTTCTTTTTTTATTTT
1 TTTTC-TTT-TTTTTTTATTTT
51789188 GATTGTGATT
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
28 11 0.17
29 13 0.20
30 17 0.26
31 15 0.23
32 10 0.15
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (28 bp):
TTTTCTTTTTTTTTTATTTTTTTCTTTA
Found at i:51789158 original size:1 final size:1
Alignment explanation
Indices: 51789075--51789146 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
51789065 TTGATTTTGA
* * * * * * ** *
51789075 TTTTTTCTTTTTTTTTTCTTTTTTTCTTTATTTTTTGTTTTTTTTTATTTTCATTTTTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
51789140 GTTTTTT
1 TTTTTTT
51789147 ATTGATTTTT
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.86
Consensus pattern (1 bp):
T
Found at i:51789168 original size:14 final size:12
Alignment explanation
Indices: 51789082--51789186 Score: 69
Period size: 12 Copynumber: 8.9 Consensus size: 12
51789072 TGATTTTTTC
*
51789082 TTTTTTT-TTTC
1 TTTTTTTATTTA
*
51789093 TTTTTTTCTTTA
1 TTTTTTTATTTA
51789105 TTTTTTGT-TTT-
1 TTTTTT-TATTTA
*
51789116 TTTTTATT-TTCA
1 TTTTT-TTATTTA
51789128 TTTTTTTATTT-
1 TTTTTTTATTTA
*
51789139 TGTTTTTTATTGA
1 T-TTTTTTATTTA
51789152 TTTTTTTATTTCA
1 TTTTTTTATTT-A
* * *
51789165 ATTTTCT-TTTC
1 TTTTTTTATTTA
51789176 TTTTTTTATTT
1 TTTTTTTATTT
51789187 TGATTGTGAT
Statistics
Matches: 75, Mismatches: 10, Indels: 17
0.74 0.10 0.17
Matches are distributed among these distances:
11 23 0.31
12 44 0.59
13 8 0.11
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTTTTATTTA
Found at i:51789181 original size:36 final size:37
Alignment explanation
Indices: 51789082--51789185 Score: 96
Period size: 38 Copynumber: 2.9 Consensus size: 37
51789072 TGATTTTTTC
*
51789082 TTTTTT-TTTTC--TTT-TTTTCTTTATTTT-TTGTTT
1 TTTTTTATTTTCATTTTCTTTTCTTT-TTTTATTGTAT
* *
51789115 TTTTTTATTTTCATTTTTTTATTTTGTTTTTTATTG-AT
1 TTTTTTATTTTCATTTTCTT-TTCT-TTTTTTATTGTAT
51789153 TTTTTTA-TTTCAATTTTCTTTTCTTTTTTTATT
1 TTTTTTATTTTC-ATTTTCTTTTCTTTTTTTATT
51789186 TTGATTGTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
33 6 0.10
34 5 0.08
36 12 0.20
37 9 0.15
38 22 0.37
39 5 0.08
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.82
Consensus pattern (37 bp):
TTTTTTATTTTCATTTTCTTTTCTTTTTTTATTGTAT
Found at i:51796962 original size:42 final size:42
Alignment explanation
Indices: 51796916--51796998 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
51796906 GTTTCAGCTT
* *
51796916 AGCTCTT-TCGAGCTTCAGTTTAACCCTTATGGGTTTTCGTTC
1 AGCTCTTAT-GAGCTTCAGTTCAACCCTTATGGGTTTCCGTTC
*
51796958 AGCTCTTATGAGCTTCCGTTCAACCCTTATGGGTTTCCGTT
1 AGCTCTTATGAGCTTCAGTTCAACCCTTATGGGTTTCCGTT
51796999 TAGCACTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 36 0.97
43 1 0.03
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.41
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCAGTTCAACCCTTATGGGTTTCCGTTC
Found at i:51796967 original size:21 final size:21
Alignment explanation
Indices: 51796937--51796998 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
51796927 GCTTCAGTTT
*
51796937 AACCCTTATGGGTTTTCGTTC
1 AACCCTTATGGGTTTCCGTTC
* * * *
51796958 AGCTCTTATGAGCTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
51796979 AACCCTTATGGGTTTCCGTT
1 AACCCTTATGGGTTTCCGTT
51796999 TAGCACTTGC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.40
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:51799305 original size:59 final size:59
Alignment explanation
Indices: 51799198--51799355 Score: 205
Period size: 59 Copynumber: 2.7 Consensus size: 59
51799188 GAAGGAGAAA
* *
51799198 CCCATAACA-CTTACTGTGAAAGTCCGTCGGGACTGTAAACACACGATTCTGTGTGTTGC
1 CCCATGACACCTT-CTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
* * * *
51799257 CTCAT-AGCACCTTCTGTGAAAGTCTG-CTGGGACAGTAAACATATGATTCTGTGTGTTGC
1 CCCATGA-CACCTTCTGTGAAAGTCCGTC-GGGACAGTAAACACACGATTCTGTGTGTTGC
*
51799316 CCCATGACACCTTCTGTGAAAGTCCGTCGGGACAATAAAC
1 CCCATGACACCTTCTGTGAAAGTCCGTCGGGACAGTAAAC
51799356 TCGTAATTTT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
58 2 0.02
59 79 0.92
60 5 0.06
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (59 bp):
CCCATGACACCTTCTGTGAAAGTCCGTCGGGACAGTAAACACACGATTCTGTGTGTTGC
Found at i:51799369 original size:59 final size:58
Alignment explanation
Indices: 51799198--51799375 Score: 191
Period size: 59 Copynumber: 3.0 Consensus size: 58
51799188 GAAGGAGAAA
* * *
51799198 CCCATA-ACACTTACTGTGAAAGTCCGTCGGGACTGTAAACACACGATTCTGTGTGTTGC
1 CCCATACAC-CTT-CTGTGAAAGTCCGTCGGGACAGTAAACTCATGATTCTGTGTGTTGC
* *
51799257 CTCATAGCACCTTCTGTGAAAGTCTG-CTGGGACAGTAAACAT-ATGATTCTGTGTGTTGC
1 CCCATA-CACCTTCTGTGAAAGTCCGTC-GGGACAGTAAAC-TCATGATTCTGTGTGTTGC
* * * * *
51799316 CCCATGACACCTTCTGTGAAAGTCCGTCGGGACAATAAACTCGTAATTTTGTGTATTGC
1 CCCAT-ACACCTTCTGTGAAAGTCCGTCGGGACAGTAAACTCATGATTCTGTGTGTTGC
51799375 C
1 C
51799376 TATGTGTCGT
Statistics
Matches: 100, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.02
59 91 0.91
60 5 0.05
61 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (58 bp):
CCCATACACCTTCTGTGAAAGTCCGTCGGGACAGTAAACTCATGATTCTGTGTGTTGC
Found at i:51804242 original size:13 final size:15
Alignment explanation
Indices: 51804224--51804265 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
51804214 TATTGTTTGA
51804224 TAAAATT-ATTTT-T
1 TAAAATTAATTTTAT
51804237 TAAAATTTAATTTTAT
1 TAAAA-TTAATTTTAT
51804253 TAAAATTTAATTT
1 TAAAA-TTAATTT
51804266 AATTTTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.19
14 2 0.08
15 5 0.19
16 14 0.54
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAAATTAATTTTAT
Found at i:51804257 original size:16 final size:15
Alignment explanation
Indices: 51804231--51804265 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
51804221 TGATAAAATT
51804231 ATTTTTTAAAATTTA
1 ATTTTTTAAAATTTA
51804246 ATTTTATTAAAATTTA
1 ATTTT-TTAAAATTTA
51804262 ATTT
1 ATTT
51804266 AATTTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTTTTAAAATTTA
Found at i:51804857 original size:31 final size:31
Alignment explanation
Indices: 51804823--51804883 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
51804813 AAAAATTATA
* *
51804823 AAATAATTCAAAATAATTTTAAAATAATTCA
1 AAATAATTCAAAATAATTTCAAAATAATTTA
*
51804854 AAATAATTTTAAAATAATTT-AAAATAATTT
1 AAATAA-TTCAAAATAATTTCAAAATAATTT
51804884 TTAAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATAATTCAAAATAATTTCAAAATAATTTA
Found at i:51804911 original size:29 final size:29
Alignment explanation
Indices: 51804814--51804933 Score: 57
Period size: 32 Copynumber: 3.9 Consensus size: 29
51804804 TCTCTCAACA
* *
51804814 AAAATTATAAAATAATTCAAAATAATTTTAA
1 AAAATT-TAAAATAATTTAAAAAAATTTT-A
* * *
51804845 AATAATTCAAAATAATTTTAAAATAATTTAA
1 AA-AATTTAAAATAA-TTTAAAAAAATTTTA
** *
51804876 AATAATTTTTAA-AATTT-AAAATATTTATAA
1 AA-AATTTAAAATAATTTAAAAAAATTT-T-A
*
51804906 AAAATTTTAAAA-AATATATAAAAAATTT
1 AAAA-TTTAAAATAATTTA-AAAAAATTT
51804934 AAGATTTAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
28 7 0.10
29 5 0.07
30 14 0.20
31 19 0.28
32 24 0.35
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAATTTAAAATAATTTAAAAAAATTTTA
Found at i:51804916 original size:21 final size:21
Alignment explanation
Indices: 51804816--51804935 Score: 126
Period size: 21 Copynumber: 5.9 Consensus size: 21
51804806 TCTCAACAAA
* *
51804816 AATTATAAAATAATTCAAAAT
1 AATTTTAAAATAATTTAAAAT
*
51804837 AATTTTAAAATAATTCAAAAT
1 AATTTTAAAATAATTTAAAAT
51804858 AATTTTAAAATAATTTAAAAT
1 AATTTTAAAATAATTTAAAAT
*
51804879 AATTTT-TAA-AATTTAAAAT
1 AATTTTAAAATAATTTAAAAT
51804898 -ATTTATAAAA-AATTTTAAAA-
1 AATTT-TAAAATAA-TTTAAAAT
*
51804918 AATATATAAAA-AATTTAA
1 AAT-TTTAAAATAATTTAA
51804936 GATTTAAAAA
Statistics
Matches: 89, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.04
19 11 0.12
20 11 0.12
21 62 0.70
22 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTTTAAAATAATTTAAAAT
Found at i:51804918 original size:11 final size:10
Alignment explanation
Indices: 51804816--51804935 Score: 104
Period size: 10 Copynumber: 11.7 Consensus size: 10
51804806 TCTCAACAAA
51804816 AATTATAAAAT
1 AATT-TAAAAT
*
51804827 AATTCAAAAT
1 AATTTAAAAT
51804837 AATTTTAAAAT
1 AA-TTTAAAAT
*
51804848 AATTCAAAAT
1 AATTTAAAAT
51804858 AATTTTAAAAT
1 AA-TTTAAAAT
51804869 AATTTAAAAT
1 AATTTAAAAT
**
51804879 AATTTTTAA-
1 AATTTAAAAT
51804888 AATTTAAAAT
1 AATTTAAAAT
*
51804898 -ATTTATAAAA
1 AATTTA-AAAT
51804908 AATTTTAAAA-
1 AA-TTTAAAAT
51804918 AATATATAAAA-
1 AAT-T-TAAAAT
51804929 AATTTAA
1 AATTTAA
51804936 GATTTAAAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
9 16 0.17
10 38 0.41
11 34 0.37
12 4 0.04
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:51808732 original size:40 final size:40
Alignment explanation
Indices: 51808649--51808871 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
51808639 TTGAATGCTG
* * * * *
51808649 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
51808689 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
51808729 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
51808769 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
51808809 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
51808848 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51808872 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:51808786 original size:80 final size:79
Alignment explanation
Indices: 51808649--51808873 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
51808639 TTGAATGCTG
* * * * * *
51808649 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
51808712 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
51808729 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
51808794 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
51808809 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
51808873 G
65 G
51808874 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:51808891 original size:79 final size:80
Alignment explanation
Indices: 51808724--51808906 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
51808714 GTGCGAGATA
** *
51808724 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
51808789 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
51808804 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
51808868 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
51808883 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
51808907 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:51808891 original size:119 final size:120
Alignment explanation
Indices: 51808649--51808906 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
51808639 TTGAATGCTG
* * * * *
51808649 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
51808714 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
51808769 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
51808831 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
51808888 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51808907 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:51816230 original size:13 final size:14
Alignment explanation
Indices: 51816204--51816245 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
51816194 TTGAGTAAAA
51816204 AAAAGTGAAAAATG
1 AAAAGTGAAAAATG
51816218 AAAAGTG-AAAATG
1 AAAAGTGAAAAATG
* *
51816231 AAAAATAAAAAATG
1 AAAAGTGAAAAATG
51816245 A
1 A
51816246 TGAAAAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (14 bp):
AAAAGTGAAAAATG
Found at i:51816240 original size:6 final size:7
Alignment explanation
Indices: 51816203--51816245 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
51816193 TTTGAGTAAA
51816203 AAAAAGTG
1 AAAAA-TG
51816211 AAAAATG
1 AAAAATG
*
51816218 AAAAGTG
1 AAAAATG
51816225 -AAAATG
1 AAAAATG
*
51816231 AAAAATA
1 AAAAATG
51816238 AAAAATG
1 AAAAATG
51816245 A
1 A
51816246 TGAAAAAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
6 5 0.17
7 20 0.67
8 5 0.17
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:51817908 original size:129 final size:129
Alignment explanation
Indices: 51817540--51817933 Score: 589
Period size: 128 Copynumber: 3.1 Consensus size: 129
51817530 TTGAAGATTG
** *
51817540 CAAGTCCTA-ACTCCCTGACCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTATCT-CCTAAG
1 CAAGTCCTATA-TCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAG
** * * *
51817602 CAGTAGTAGAGCAGATCGAAGACGGTAAATCTTATCTTCAAGAGTAAGGAAACAGATTTAAGCCT
65 CAGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
* * *
51817667 CAAGTCTTATTTCTCTGGTCAGCAGTGGAATAGGTTGGG-AATTACAGATCTTGTCTCCCTAAGC
1 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
*
51817731 AGTAGCGGAGCAGATCGAAAACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
51817795 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
1 CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
* * ** *
51817860 AGTAGCGGAGCAGATCGAAGACTGCGAATCTTATCTTCAACTGTAAGGAAGTAGATTTAAGCCA
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
*
51817924 CAAATCCTAT
1 CAAGTCCTAT
51817934 CTCCTTGAAG
Statistics
Matches: 241, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
127 46 0.19
128 103 0.43
129 92 0.38
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (129 bp):
CAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCA
Found at i:51818196 original size:44 final size:44
Alignment explanation
Indices: 51818059--51818437 Score: 136
Period size: 44 Copynumber: 8.7 Consensus size: 44
51818049 TAAGCAGGTG
* * * * *
51818059 TTATC-CCCTGAAGTTGCAGTGG-GACAGATCGAAGATGACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAG-CAGAT-TAAAATAATAGATC
* * * ****
51818103 TTATCTCCCTGAGGTTGCAGTGAAACAGATTGAAGCCGATA-ATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGATC
* *
51818147 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
** * ** *** * *
51818191 TTATCTTTCTGAAGTTGCAGTAGAGTGGA-TGGCAT--CAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
* *
51818232 TTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAA-ACA-AG-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAATA-ATAGATC
* * ** * *** * *
51818276 TTCT-TCCCCTAAAGTCACAGTGGGGCAGA-CCGAATAAGCAAATC
1 TTATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAATAA-TAGATC
* * * * *
51818320 TTATCTCCCTG-AGATTACAGTGGAGTAGATTGAAGTCGATA-ATC
1 TTATCTCCCTGAAG-TTGCAGTGGAGCAGATTAAAAT-AATAGATC
* * * * * *
51818364 CTATCTCCCTAAAGTTGTAGTGGAGCGGGTTAAAGTAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
* *
51818408 TTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGAT
51818438 CGCATCAAGT
Statistics
Matches: 241, Mismatches: 73, Indels: 42
0.68 0.21 0.12
Matches are distributed among these distances:
41 30 0.12
42 1 0.00
43 15 0.06
44 160 0.66
45 34 0.14
46 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGATC
Found at i:51818320 original size:217 final size:217
Alignment explanation
Indices: 51817926--51818450 Score: 710
Period size: 217 Copynumber: 2.4 Consensus size: 217
51817916 TTAAGCCACA
* * * *
51817926 AATCCTATCTCCTTGAAGTTGTAGTGAAGCGGATTAAAGTAATAAATCTTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
* * * * *
51817991 CAGTAGAGTGGATCGCATTAGGTCTTATCTCTCTAAGGTTGCAGCGGAACAGACTGAGTAAGCAG
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
* * ** * * * *
51818056 GTGTTATCCCCTGAAGTTGCAGTGGGACAGATCGAAGATGACAAATCTTATCTCCCTGAGGTTGC
131 GTCTTATCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTAC
51818121 AGTGAAACAGATTGAAGCCGAT
196 AGTGAAACAGATTGAAGCCGAT
* * *
51818143 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAGATCTTATCTTTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
* * * *
51818208 CAGTAGAGTGGATGGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAA
66 CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
* * *
51818273 GTCTTCTTCCCCTAAAGTCACAGTGGGGCAGACCGAATAAG-CAAATCTTATCTCCCTGAGATTA
131 GTCTT-ATCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTA
* ** *
51818337 CAGTGGAGTAGATTGAAGTCGAT
195 CAGTGAAACAGATTGAAGCCGAT
* *
51818360 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGGTTAAAGTAATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
** *
51818425 CAGTAGAGCAGATCGCATCAAGTCTT
66 CAGTAGAGTGGATCGCATCAGGTCTT
51818451 GCCGACTAGA
Statistics
Matches: 267, Mismatches: 40, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
217 240 0.90
218 27 0.10
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (217 bp):
AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTG
CAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAGGTTGCAGCGGAACAGACTGAGAAAACAA
GTCTTATCCCCTAAAGTCACAGTGGGACAGACCGAAGAAGACAAATCTTATCTCCCTGAGATTAC
AGTGAAACAGATTGAAGCCGAT
Found at i:51823360 original size:285 final size:290
Alignment explanation
Indices: 51822909--51823531 Score: 687
Period size: 291 Copynumber: 2.2 Consensus size: 290
51822899 TTTTTAATTT
* * * ** * * ** *
51822909 AAAAGACTAAAATATCTTCGAATAATATAAGTTATTTTAAATATGGAATGACATTTTTTTAATTT
1 AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
* *
51822974 CCTAAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATTTTATTAATAGTTT
66 CCTAAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATCTTA-TAATAG-AT
* * *
51823039 AGATACAATTGATGGAATTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAGTAT-TAAAA
129 AGATACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATCAAAAA
* * * *
51823103 AA-ACTTT-T-AGTGGTAAATTAAATATTTTACTAATGCAATTGACTTATGTGGGTTCAAATCTC
194 AAGACTTTGTAAGCGGTAAATTAAAGATTTTACTAATACAATTG----ATGTAGGTTCAAATCTC
** *
51823165 ACCATGTGCATATTTTTATT-G-GTGTTTTAAAGTA
255 ACCATACGCATATTTTTATTAGTGTGTTTTAAAATA
*
51823199 AAAAGATTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
1 AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATT-
* * * * * *
51823264 CCCTAATCGAGTTGGTGTCTGGTTTACTCAT-ATCACCAACTCAGTCAAGAA-CTTA-AATA-AT
65 CCCTAAACAAGTTGGTGCCTAGTTGACTCATGAT-ACCAACTCAGCCAAGAATCTTATAATAGAT
* * * *
51823325 AG-TACAATTGATGGAGGTAATAAAGTGTGCATAATAAATTTAGAATGTATAAAAATGTCAAAAA
129 AGATACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATCAAAAA
* * *
51823389 AAGAGTTTAGGTAAGCGGTAAATTAAAGGTTTTTCTAATACAATTGATGTAGGTTCAAATCTCAC
194 AAGACTTT--GTAAGCGGTAAATTAAAGATTTTACTAATACAATTGATGTAGGTTCAAATCTCAC
* *
51823454 CATACGCATATTTTTATTAGTTTTTTTTAAAATA
257 CATACGCATATTTTTATTAGTGTGTTTTAAAATA
* *
51823488 AAACA-ACTAAAATACCCTT-GAATAATATTACCCATTTTAAATAC
1 AAA-AGACTAAAATA-CCTTCGAATAATATAACTCATTTTAAATAC
51823532 GAAAATACAT
Statistics
Matches: 280, Mismatches: 41, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
285 50 0.18
286 9 0.03
287 38 0.14
288 5 0.02
289 44 0.16
290 65 0.23
291 69 0.25
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (290 bp):
AAAAGACTAAAATACCTTCGAATAATATAACTCATTTTAAATACAGAAGGACATCTTCGTAATTC
CCTAAACAAGTTGGTGCCTAGTTGACTCATGATACCAACTCAGCCAAGAATCTTATAATAGATAG
ATACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATCAAAAAAA
GACTTTGTAAGCGGTAAATTAAAGATTTTACTAATACAATTGATGTAGGTTCAAATCTCACCATA
CGCATATTTTTATTAGTGTGTTTTAAAATA
Found at i:51823612 original size:289 final size:282
Alignment explanation
Indices: 51823042--51823614 Score: 616
Period size: 289 Copynumber: 2.0 Consensus size: 282
51823032 ATAGTTTAGA
* * *
51823042 TACAATTGATGGAATTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAGTATTAAAAAAAC
1 TACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATAAAAAAAAC
* * * * **
51823107 TTTTAGTGGTAAATTAAATATTTTACTAATGCAATTGACTTATGTGGGTTCAAATCTCACCATGT
66 TTTTAGCGGTAAATTAAAGATTTTACTAATACAATTG---TATGTAGGTTCAAATCTCACCATAC
* * *
51823172 GCATATTTTTATTGGTGTTTTAAAGTAAAAAGATTAAAATACCTTCGAATAATATAACTCATTTT
128 GCATATTTTTATTGGTGTTTTAAAATAAAAAGACTAAAATACCTTCGAATAATATAACCCATTTT
* * **** * *
51823237 AAATACAGAAGGACATCTTCGTAATTCCCCTAATCGAGTTGGTGTCTGGTTTACTCATATCACCA
193 AAATACAGAAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCATATCACCA
* *
51823302 ACTCAGTCAAGAACTTAAATAATAG
258 ACTCAATCAAGAACATAAATAATAG
* * * *
51823327 TACAATTGATGGAGGTAATAAAGTGTGCATAATAAATTTAGAATGTATAAAAATGTCAAAAAAAG
1 TACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATAT-AAAAAAA-
* * *
51823392 AGTTTAGGTAAGCGGTAAATTAAAGGTTTTTCTAATACAATTG-ATGTAGGTTCAAATCTCACCA
64 ACTTT---T-AGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTCACCA
* * *
51823456 TACGCATATTTTTATTAGTTTTTTTTAAAATAAAACA-ACTAAAATACCCTT-GAATAATATTAC
125 TACGCATATTTTTATT-G-GTGTTTTAAAATAAAA-AGACTAAAATA-CCTTCGAATAATATAAC
* * * * *
51823519 CCATTTTAAATAC-GAAAATACATTTTTGTAATTTCTCTAATCAAGTTGACACCCGATTTACTCA
186 CCATTTTAAATACAG-AAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCA
* * *
51823583 TGAT-ACCAATTCAATCAATAGCATAAATAATA
250 T-ATCACCAACTCAATCAAGAACATAAATAATA
51823615 TATAGATGTT
Statistics
Matches: 236, Mismatches: 40, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
285 50 0.21
286 6 0.03
287 38 0.16
288 2 0.01
289 104 0.44
290 8 0.03
291 28 0.12
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (282 bp):
TACAATTGATGGAAGTAATAAAGTGTGCATAATAAAATTAAAATGTATAAAAATATAAAAAAAAC
TTTTAGCGGTAAATTAAAGATTTTACTAATACAATTGTATGTAGGTTCAAATCTCACCATACGCA
TATTTTTATTGGTGTTTTAAAATAAAAAGACTAAAATACCTTCGAATAATATAACCCATTTTAAA
TACAGAAAGACATCTTCGTAATTCCCCTAATCAAGTTGACACCCGATTTACTCATATCACCAACT
CAATCAAGAACATAAATAATAG
Found at i:51826325 original size:17 final size:17
Alignment explanation
Indices: 51826299--51826332 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51826289 TCAAAACAAC
*
51826299 ATAATGAACATTCAAAT
1 ATAATGAACATTAAAAT
*
51826316 ATAATTAACATTAAAAT
1 ATAATGAACATTAAAAT
51826333 GATTACGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAATGAACATTAAAAT
Found at i:51826821 original size:19 final size:18
Alignment explanation
Indices: 51826793--51826840 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 18
51826783 TAACAGCCCG
51826793 TATTTATCATC-AATTTGTAA
1 TATTT-TCATCTAATTT-T-A
51826813 TATTTTCATCTAATTTTA
1 TATTTTCATCTAATTTTA
51826831 TCATTTTCAT
1 T-ATTTTCAT
51826841 AAATAAGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 2 0.08
19 14 0.54
20 10 0.38
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.56
Consensus pattern (18 bp):
TATTTTCATCTAATTTTA
Found at i:51838454 original size:13 final size:13
Alignment explanation
Indices: 51838436--51838477 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
51838426 AGATTTTTCG
51838436 TAAATATTATCAC
1 TAAATATTATCAC
51838449 TAAATA--ATC-C
1 TAAATATTATCAC
51838459 TAAATATTATCAC
1 TAAATATTATCAC
51838472 TAAATA
1 TAAATA
51838478 AATCAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
12 3 0.12
13 13 0.50
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:51838486 original size:23 final size:23
Alignment explanation
Indices: 51838437--51838486 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
51838427 GATTTTTCGT
*
51838437 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
51838460 AAATATTATCACTAAATAAAT-CA
1 AAATATTATCACTAAAT-AATCCA
51838483 AAAT
1 AAAT
51838487 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:51842246 original size:13 final size:13
Alignment explanation
Indices: 51842228--51842260 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
51842218 AATTTTGATT
51842228 TATTTAGTGATAA
1 TATTTAGTGATAA
51842241 TATTTAGTGATAA
1 TATTTAGTGATAA
51842254 TATTTAG
1 TATTTAG
51842261 GGAAAATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:51844911 original size:21 final size:21
Alignment explanation
Indices: 51844887--51844927 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
51844877 ATATGGAATC
*
51844887 AGATTTTGTTTAAAGGCTTTA
1 AGATTCTGTTTAAAGGCTTTA
51844908 AGATTCTGTTTAAAGGCTTT
1 AGATTCTGTTTAAAGGCTTT
51844928 CTTTTGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (21 bp):
AGATTCTGTTTAAAGGCTTTA
Found at i:51846687 original size:22 final size:23
Alignment explanation
Indices: 51846638--51846681 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
51846628 TTTCGATGCC
*
51846638 TGTAATAGCCCGAAAATTACTAA
1 TGTAATAGCCCAAAAATTACTAA
51846661 TGTAATA-CCCAAAAATTACTA
1 TGTAATAGCCCAAAAATTACTA
51846682 CAGTAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (23 bp):
TGTAATAGCCCAAAAATTACTAA
Found at i:51864108 original size:15 final size:14
Alignment explanation
Indices: 51864090--51864119 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
51864080 AATGACTATT
51864090 ACATTAATAATGAAA
1 ACATTAATAAT-AAA
51864105 ACATTAATAATAAA
1 ACATTAATAATAAA
51864119 A
1 A
51864120 TAAGTATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (14 bp):
ACATTAATAATAAA
Found at i:51864597 original size:22 final size:21
Alignment explanation
Indices: 51864567--51864611 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
51864557 AATTATTATC
* *
51864567 ATATTTAAAATAATTCATACTT
1 ATATATAAAAAAATT-ATACTT
*
51864589 ATATATAAAAAAATTATATTT
1 ATATATAAAAAAATTATACTT
51864610 AT
1 AT
51864612 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (21 bp):
ATATATAAAAAAATTATACTT
Found at i:51867970 original size:39 final size:38
Alignment explanation
Indices: 51867923--51868037 Score: 106
Period size: 39 Copynumber: 3.0 Consensus size: 38
51867913 ATAAAGATGC
51867923 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
1 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
* * * * *
51867961 TTTACGAGTATTATGAG-ATATGCTTAAACGTCATGAGAT
1 TTTA-GAGTATTGTG-GTATATGCTTGAATGTTATGTGAT
* * * * *
51868000 TATATGAGTATGGTGATATATGCTTGTATGTTAAGTGA
1 TTTA-GAGTATTGTGGTATATGCTTGAATGTTATGTGA
51868038 CCTAAAACCT
Statistics
Matches: 58, Mismatches: 16, Indels: 5
0.73 0.20 0.06
Matches are distributed among these distances:
38 4 0.07
39 53 0.91
40 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.42
Consensus pattern (38 bp):
TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
Found at i:51875530 original size:108 final size:108
Alignment explanation
Indices: 51875403--51876037 Score: 509
Period size: 108 Copynumber: 5.9 Consensus size: 108
51875393 TGGAGTTTGC
** * * * *
51875403 TGATTTACGATCACAACCTTCTCCTTACAGGATTTTACGGATCTCACAGTCTGCCGATTTACGAT
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGAT
* * * **
51875468 CACAACTTTCTACTTTA-GGGATTTTACAAATCTTGCGATTCGT
66 CACGACCTTCTAC-TTACGGGATTTTACGAATCTCACGATTCGT
* * * * **
51875511 TGATTTACGATCATGACCTTTTACTGACGGGACTTTACAAATCTCGTAGTCTGCTGATTTACGAT
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGAT
* ** * *
51875576 TACGA-C--CTACTTACAAGATTTTATGACTCTCACGATCTAC-T
66 CACGACCTTCTACTTACGGGATTTTACGAATCTCACGAT-T-CGT
* * * * * * **
51875617 T-ATTTACGATGATAACCTTTTACATATGGGATTTTACAAATCTCATGGTCTGCTGATTTACGAT
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGAT
* * * * ** * * *
51875681 AATGACCTTTTACTTATGAAATTTTATGAATCTCACGATTAGC
66 CACGACCTTCTACTTACGGGATTTTACGAATCTCACGATTCGT
* * * * * ** *
51875724 TAATTTACGATCAAGACCTTCTACTTATGAGATTTTACGAATCTTACAGTCCACTGATTTATGAT
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGAT
* * * *
51875789 CATGACCTTCTACTTACGGGATTTTACAAATCTCAC-AGTCCTT
66 CACGACCTTCTACTTACGGGATTTTACGAATCTCACGA-TTCGT
* * * *
51875832 TGATTTACGATCATGATCTTCTACTTACGGGATTTTACGAATCTCACGGT-TCGTTGATTTATGA
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCT-GCTGATTTACGA
* * *
51875896 TCATGACCTCCTACTTATGGGATTTTACGAATCT-AGCGATAT-GT
65 TCACGACCTTCTACTTACGGGATTTTACGAATCTCA-CGAT-TCGT
* * * * * *
51875940 TAATTTACGTTCATGACCTTCTACTTACGGGATTTTACGAATCTCACGGTCCT-CTAATTTATGT
1 TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGT-CTGCTGATTTACGA
** * *
51876004 TCATAACCTTCTAATTACGTGATTTTACGAATCT
65 TCACGACCTTCTACTTACGGGATTTTACGAATCT
51876038 AGGTGTGTTT
Statistics
Matches: 423, Mismatches: 89, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
104 3 0.01
105 77 0.18
106 4 0.01
107 5 0.01
108 332 0.78
109 1 0.00
110 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
TGATTTACGATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTGCTGATTTACGAT
CACGACCTTCTACTTACGGGATTTTACGAATCTCACGATTCGT
Found at i:51875638 original size:105 final size:106
Alignment explanation
Indices: 51875513--51875736 Score: 276
Period size: 105 Copynumber: 2.1 Consensus size: 106
51875503 CGATTCGTTG
* * *
51875513 ATTTACGATCATGACCTTTTAC-TGACGGGACTTTACAAATCTCGTAGTCTGCTGATTTACGATT
1 ATTTACGATCATAACCTTTTACAT-ACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATA
* *
51875577 ACGACC-TACTTA-CAAGATTTTATGACTCTCACGATCTA-CTT
65 ACGACCTTACTTATCAA-ATTTTATGAATCTCACGAT-TAGCTA
* * * *
51875618 ATTTACGATGATAACCTTTTACATATGGGATTTTACAAATCTCATGGTCTGCTGATTTACGATAA
1 ATTTACGATCATAACCTTTTACATACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATAA
* *
51875683 TGACCTTTTACTTATGAAATTTTATGAATCTCACGATTAGCTA
66 CGACC--TTACTTATCAAATTTTATGAATCTCACGATTAGCTA
51875726 ATTTACGATCA
1 ATTTACGATCA
51875737 AGACCTTCTA
Statistics
Matches: 101, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
105 60 0.59
106 1 0.01
107 2 0.02
108 36 0.36
109 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (106 bp):
ATTTACGATCATAACCTTTTACATACGGGACTTTACAAATCTCATAGTCTGCTGATTTACGATAA
CGACCTTACTTATCAAATTTTATGAATCTCACGATTAGCTA
Found at i:51875877 original size:54 final size:53
Alignment explanation
Indices: 51875250--51876037 Score: 455
Period size: 54 Copynumber: 14.7 Consensus size: 53
51875240 TTTAATTAAA
* * * * * ** * *
51875250 ATCACGACTTTCTACTTACAGAATTTTATGAATCTTGCGGTCCTCTGATTTAAG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGT-CTCTGATTTACG
* * * ** * * * * * *
51875304 ATCATGACATTTTACATATAGGATTTTACGAATCTCATGAGCCACTCATTTTCA
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCA-CAGTCTCTGATTTACG
* * *** *
51875358 ATCA-GAACCTT-TAACTTACGAGATTTTACGAACCTTGGAGTTTGCTGATTTACG
1 ATCATG-ACCTTCT-ACTTACGGGATTTTACGAATCTCACAGTCT-CTGATTTACG
** * * * *
51875412 ATCACAACCTTCTCCTTACAGGATTTTACGGATCTCACAGTCTGCCGATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCT-CTGATTTACG
** * * ** *
51875466 ATCACAACTTTCTACTTTA-GGGATTTTACAAATCTTGCGATTCGT-TGATTTACG
1 ATCATGACCTTCTAC-TTACGGGATTTTACGAATCTCAC-AGTC-TCTGATTTACG
* * * * **
51875520 ATCATGACCTTTTACTGACGGGACTTTACAAATCTCGTAGTCTGCTGATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCT-CTGATTTACG
* * ** * * *
51875574 ATTACGA-C--CTACTTACAAGATTTTATGACTCTCAC-GATCTACTTATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAG-TCT-CTGATTTACG
* * * * * * **
51875625 ATGATAACCTTTTACATATGGGATTTTACAAATCTCATGGTCTGCTGATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCT-CTGATTTACG
* * * ** * * ** *
51875679 ATAATGACCTTTTACTTATGAAATTTTATGAATCTCACGATTAGCTAATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCAC-AGTCTCTGATTTACG
* * * * * *
51875733 ATCAAGACCTTCTACTTATGAGATTTTACGAATCTTACAGTCCACTGATTTATG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGT-CTCTGATTTACG
* *
51875787 ATCATGACCTTCTACTTACGGGATTTTACAAATCTCACAGTCCTTTGATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGT-CTCTGATTTACG
* * *
51875841 ATCATGATCTTCTACTTACGGGATTTTACGAATCTCACGGT-TCGTTGATTTATG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTC--TGATTTACG
* * * * *
51875895 ATCATGACCTCCTACTTATGGGATTTTACGAATCT-AGC-GATATGTTAATTTACG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCA-CAG-TCT-CTGATTTACG
* * * *
51875949 TTCATGACCTTCTACTTACGGGATTTTACGAATCTCACGGTCCTCTAATTTATG
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGT-CTCTGATTTACG
* * * *
51876003 TTCATAACCTTCTAATTACGTGATTTTACGAATCT
1 ATCATGACCTTCTACTTACGGGATTTTACGAATCT
51876038 AGGTGTGTTT
Statistics
Matches: 566, Mismatches: 140, Indels: 56
0.74 0.18 0.07
Matches are distributed among these distances:
50 1 0.00
51 33 0.06
52 3 0.01
53 15 0.03
54 499 0.88
55 14 0.02
56 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (53 bp):
ATCATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCTCTGATTTACG
Found at i:51876481 original size:54 final size:54
Alignment explanation
Indices: 51876369--51876546 Score: 144
Period size: 54 Copynumber: 3.3 Consensus size: 54
51876359 TGGTCTATTG
* * * * * * * **** *
51876369 ATTTACGATAATGACCTTTTACTTACGGGATTTTATGAATCTCACAGTTTGTTG
1 ATTTACGATCATGACCTTCTACATACAGGATTTTAAGAATCCCACGGTCCACTA
* *
51876423 ATTTACGATCATGACCTTCTACTTA-TGAGATTTTACA-AATCCCACGGTCCACTA
1 ATTTACGATCATGACCTTCTACATACAG-GATTTTA-AGAATCCCACGGTCCACTA
** **
51876477 ATTTACGATCATGATTTTCTACATACAGGATTTTAAGAATCTTACGGTCCACTA
1 ATTTACGATCATGACCTTCTACATACAGGATTTTAAGAATCCCACGGTCCACTA
* *
51876531 ATTTATGATCACGACC
1 ATTTACGATCATGACC
51876547 ACCTATTTAC
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
53 2 0.02
54 96 0.97
55 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (54 bp):
ATTTACGATCATGACCTTCTACATACAGGATTTTAAGAATCCCACGGTCCACTA
Found at i:51877715 original size:13 final size:13
Alignment explanation
Indices: 51877697--51877722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51877687 GAAACAAAGA
51877697 AACCCTAGCCTCT
1 AACCCTAGCCTCT
51877710 AACCCTAGCCTCT
1 AACCCTAGCCTCT
51877723 GTCGCCGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.46, G:0.08, T:0.23
Consensus pattern (13 bp):
AACCCTAGCCTCT
Found at i:51878620 original size:3 final size:3
Alignment explanation
Indices: 51878612--51878697 Score: 57
Period size: 3 Copynumber: 27.7 Consensus size: 3
51878602 TGTAATCCTT
*** * * *
51878612 TTA TTA TTA TTA TTA TTA TTA AGC TTA TTA TGA TTA TTA TTC TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
51878660 TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA TTA TTA TT
1 TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
51878698 TACCCACTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
2 1 0.02
3 57 0.89
4 3 0.05
5 1 0.02
6 2 0.03
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:51878953 original size:25 final size:27
Alignment explanation
Indices: 51878902--51878962 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51878892 AGGCTTTATA
*
51878902 ATTTATATATATACATAGATATGCATAT
1 ATTT-TATATATACATACATATGCATAT
* *
51878930 TTTTTATATGTACATACAT-T-CATAT
1 ATTTTATATATACATACATATGCATAT
51878955 ATTTTATA
1 ATTTTATA
51878963 ATTTATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATATATACATACATATGCATAT
Found at i:51879132 original size:33 final size:33
Alignment explanation
Indices: 51879091--51879163 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
51879081 GCTTTAGTTC
51879091 TTTTTATTTACTCATTGCTTCATGTATAATTGT
1 TTTTTATTTACTCATTGCTTCATGTATAATTGT
51879124 TTTTTATTTACTCATTGCTTCATGTATAATTGT
1 TTTTTATTTACTCATTGCTTCATGTATAATTGT
51879157 TTTTTAT
1 TTTTTAT
51879164 GTGTCCTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.60
Consensus pattern (33 bp):
TTTTTATTTACTCATTGCTTCATGTATAATTGT
Found at i:51879684 original size:107 final size:108
Alignment explanation
Indices: 51879480--51879684 Score: 324
Period size: 107 Copynumber: 1.9 Consensus size: 108
51879470 AAAAATAACG
* * *
51879480 AAGGTAAATATTTTGCTTTTGGAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGATTTTT
1 AAGGTAAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTC
*
51879545 TCATTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAAT
66 TCATTTGACCAAATAGCCAAATATCCTCTTAAAATTTCAAAAT
*
51879588 AAGG-AAATATTTTGCGTTTGAGAAATTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGA-TTT
1 AAGGTAAATATTTTGCGTTTG-GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTT
* *
51879651 CTCATTTGACCAAATAGTCAAATATTCTCTTAAA
65 CTCATTTGACCAAATAGCCAAATATCCTCTTAAA
51879685 TCTTAATCCA
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 48 0.54
108 41 0.46
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (108 bp):
AAGGTAAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTC
TCATTTGACCAAATAGCCAAATATCCTCTTAAAATTTCAAAAT
Found at i:51883381 original size:17 final size:17
Alignment explanation
Indices: 51883361--51883403 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
51883351 AATCAAAGTC
*
51883361 AAAAATAAGAGAAAAAG
1 AAAAAAAAGAGAAAAAG
*
51883378 AAAAAAAATAGAAAAAG
1 AAAAAAAAGAGAAAAAG
51883395 AAAAGAAAA
1 AAAA-AAAA
51883404 AGGAGAGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:51883405 original size:11 final size:11
Alignment explanation
Indices: 51883373--51883405 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
51883363 AAATAAGAGA
51883373 AAAAGAAAAA-
1 AAAAGAAAAAG
51883383 AAATAGAAAAAG
1 AAA-AGAAAAAG
51883395 AAAAGAAAAAG
1 AAAAGAAAAAG
51883406 GAGAGGTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 15 0.71
12 3 0.14
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:51885640 original size:88 final size:88
Alignment explanation
Indices: 51885491--51885995 Score: 785
Period size: 88 Copynumber: 5.7 Consensus size: 88
51885481 AACAGATCAA
*
51885491 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
51885556 CTCTCAGTTGTAGCGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* * * *
51885579 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAGTGAAGCAAATCGAAGACAAAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* * *
51885644 CTCTCGGTTGTCGCGGAGCTAGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* *
51885667 TGAAGACAATAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
51885732 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* *
51885755 TGAAGACAACAGATATTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
51885820 CTCTCAGTTGTAGTGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* * * * *
51885843 TGATGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
*
51885908 CTCTCAGTTGTAGTGGAGCTGGT
66 CTCTCAGTTGTAGCGGAGCTGGT
* * * * *
51885931 TGATGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
51885996 TCCTGCATTG
Statistics
Matches: 386, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 386 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CTCTCAGTTGTAGCGGAGCTGGT
Found at i:51886050 original size:132 final size:132
Alignment explanation
Indices: 51885593--51886124 Score: 443
Period size: 132 Copynumber: 4.0 Consensus size: 132
51885583 GACAATAGAT
* * ** * * *
51885593 CTTGCCTTCCTGCATTGACAGTGAAGCAAATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTCGC
1 CTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGC
* * *
51885658 GGAGCTAGTTGAAGACAATAGATCTTGCCTTCCT-ACATTGACAGCGAAGCAGATCGAAGACACA
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGA-ATCGACAGCGAAGCAGATCGAAGACACA
51885722 AAC
130 AAC
* * * * * *** * * ** *
51885725 CTTGCC-TCTCTCG-GTTG-TAGCGGAGCTGGTTGAAGACAACAGATATTACCT-TCCTGCA-TT
1 CTTGCCTTC-CT-GAATCGACAACGAAGCAAATCGAAGAC-ACAAACCTTGCCTCT-CT-CAGTT
* * * * * * * * * * * * * * * * *
51885785 GACAGCGAAGCAGATCGAAGAC-ACAAACCTTGCC-TCTCTCAGTTG-TAGTGGAGCTGGTTGAT
61 G-TAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTC-CTGAATCGACAGCGAAGCAGATCGAA
* *
51885847 GACAACAGAT
124 GAC-ACAAAC
*
51885857 CTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGT
1 CTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGC
* *
51885922 GGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAA
*
51885987 GC
131 AC
* * * * *
51885989 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGC
* *
51886054 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAA
51886119 AC
131 AC
51886121 CTTG
1 CTTG
51886125 TCTCTCTCGG
Statistics
Matches: 303, Mismatches: 80, Indels: 34
0.73 0.19 0.08
Matches are distributed among these distances:
131 47 0.16
132 209 0.69
133 47 0.16
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (132 bp):
CTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGC
GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAA
AC
Found at i:51886063 original size:308 final size:308
Alignment explanation
Indices: 51885681--51886303 Score: 1039
Period size: 308 Copynumber: 2.0 Consensus size: 308
51885671 GACAATAGAT
51885681 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
51885746 GGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
** *
51885811 ACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGAC
131 ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
* *
51885876 AACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAAC
196 AACAAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
* *
51885941 AGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGACACAAGC
261 AGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAAAC
*
51885989 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
* *
51886054 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
* * * * *
51886119 ACCTTGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGAT
131 ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
* * * *
51886184 AGCAAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAAC
196 AACAAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
* * * *
51886249 AGATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACATAAAC
261 AGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAAAC
51886297 CTTGCCT
1 CTTGCCT
51886304 CTCTCGGTTG
Statistics
Matches: 292, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
308 292 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (308 bp):
CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
GGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
ACCTTGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGAC
AACAAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
AGATCTTGCCTTCCTGAATCGACAGCGAAGCAGATCGAAGACACAAAC
Found at i:51886081 original size:88 final size:88
Alignment explanation
Indices: 51885989--51886376 Score: 659
Period size: 88 Copynumber: 4.4 Consensus size: 88
51885979 AGACACAAGC
51885989 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
51886054 GGAGCTGGTTGAAGACAACAGAT
66 GGAGCTGGTTGAAGACAACAGAT
*
51886077 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGTCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
*
51886142 AGAGCTGGTTGAAGACAACAGAT
66 GGAGCTGGTTGAAGACAACAGAT
* * * *
51886165 CTTGCCTTCCTGCATTGATAGCAAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGT
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
51886230 GGAGCTGGTTGAAGACAACAGAT
66 GGAGCTGGTTGAAGACAACAGAT
* * *
51886253 CTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTGTAGT
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
*
51886318 GGAGCTGGTTGAAAACAACAGAT
66 GGAGCTGGTTGAAGACAACAGAT
* * *
51886341 CTTGCCTTCCTGCATTAACGGTGAAGCAGATCGAAG
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAG
51886377 TTACAAATCC
Statistics
Matches: 282, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 282 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (88 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
GGAGCTGGTTGAAGACAACAGAT
Found at i:51886237 original size:396 final size:396
Alignment explanation
Indices: 51885593--51886352 Score: 1295
Period size: 396 Copynumber: 1.9 Consensus size: 396
51885583 GACAATAGAT
* *
51885593 CTTGCCTTCCTGCATTGACAGTGAAGCAAATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTCGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAAATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
*
51885658 GGAGCTAGTTGAAGACAATAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
*
51885723 ACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGAC
131 ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGAC
* *
51885788 AGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAAC
196 AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
51885853 AGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTG
261 AGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTG
**
51885918 TAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGAC
326 TAGTGGAGCTGGTTGAAAACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGAC
51885983 ACAAGC
391 ACAAGC
* *
51885989 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAAATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
* *
51886054 GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAA
66 GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
* * * *
51886119 ACCTTGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGAT
131 ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGAC
* *
51886184 AGCAAAGCAGATCGAAGACACAAACTTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAAC
196 AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
* * * * * * *
51886249 AGATCTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACATAAACCTTGCCTCTCTCGGTTG
261 AGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTG
51886314 TAGTGGAGCTGGTTGAAAACAACAGATCTTGCCTTCCTG
326 TAGTGGAGCTGGTTGAAAACAACAGATCTTGCCTTCCTG
51886353 CATTAACGGT
Statistics
Matches: 339, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
396 339 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (396 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAAATCGAAGACAAAAACCTTGCCTCTCTCGGTTGTAGC
GGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAA
ACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATATTACCTTCCTGCATTGAC
AGCAAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGAAGACAAC
AGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCTTGCCTCTCTCAGTTG
TAGTGGAGCTGGTTGAAAACAACAGATCTTGCCTTCCTGAATCGACAGCGAAGCGGATCGAAGAC
ACAAGC
Found at i:51886259 original size:220 final size:220
Alignment explanation
Indices: 51885773--51886215 Score: 715
Period size: 220 Copynumber: 2.0 Consensus size: 220
51885763 ACAGATATTA
*
51885773 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAG
1 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
*
51885838 CTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCT
66 CTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCT
** * *
51885903 TGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAACAGATCTTGCCTTCCTGAATCGACAGCG
131 TGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCA
* *
51885968 AAGCGGATCGAAGACACAAGCCTTG
196 AAGCAGATCGAAGACACAAACCTTG
*
51885993 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAG
1 CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
* * * *
51886058 CTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCT
66 CTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCT
* * * * *
51886123 TGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGATAGCA
131 TGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCA
*
51886188 AAGCAGATCGAAGACACAAACTTTG
196 AAGCAGATCGAAGACACAAACCTTG
51886213 CCT
1 CCT
51886216 CTCTCGGTTG
Statistics
Matches: 204, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 204 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (220 bp):
CCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAG
CTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAACGAAGCAAATCGAAGACACAAACCT
TGCCTCTCTCAGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGAATCGACAGCA
AAGCAGATCGAAGACACAAACCTTG
Found at i:51886345 original size:44 final size:44
Alignment explanation
Indices: 51885549--51886347 Score: 290
Period size: 44 Copynumber: 18.2 Consensus size: 44
51885539 AGACACAAAC
* *
51885549 CTTGCCTCTCTCAGTTGTAGCGGAGCTGGTTGAAGACAATAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * *** * * *
51885593 CTTGCCT-TC-CTGCATTGACAGTGAAGCAAATCGAAGACAA-AAAC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
* * *
51885637 CTTGCCTCTCTCGGTTGTCGCGGAGCTAGTTGAAGACAATAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * * * *
51885681 CTTGCCT-TCCTAC-ATTGACAGCGAAGCAGATCGAAGAC-ACAAAC
1 CTTGCCTCT-CT-CGGTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
51885725 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * * * * * *
51885769 ATTACCT-TC-CTGCATTGACAGCGAAGCAGATCGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
* * *
51885813 CTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * *** * * *
51885857 CTTGCCT-TC-CTGAATCGACAACGAAGCAAATCGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
* * *
51885901 CTTGCCTCTCTCAGTTGTAGTGGAGCTGGTTGATGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * *
51885945 CTTGCCT-TC-CTGAATCGACAGCGAAGC-GGATCGAAGAC-ACA-AGC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGG-TTGAAGACAACAGA-T
* * * * * * * *
51885989 CTTGCCT-TC-CTGCATTGACAGCGAAGCAGATCGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
51886033 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * * * *
51886077 CTTGCCT-TC-CTGCATTGACAGCGAAGCAGATCGAAGAC-ACAAAC
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
* *
51886121 CTTGTCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* ** * * * *
51886165 CTTGCCT-TC-CTGCATTGATAGCAAAGCAGATCGAAGAC-ACA-AA
1 CTTGCCTCTCTC-G-GTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
*
51886208 CTTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAACAGAT
1 C-TTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
* * * * * * * *
51886253 CTTGCCT-TCTTGCATTGACAGCGAAGCAGATCGAAGACATA-A-AC
1 CTTGCCTCTCTCG-GTTG-TAGCGGAGCTGGTTGAAGACA-ACAGAT
* *
51886297 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAAACAACAGAT
1 CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
51886341 CTTGCCT
1 CTTGCCT
51886348 TCCTGCATTA
Statistics
Matches: 538, Mismatches: 163, Indels: 108
0.67 0.20 0.13
Matches are distributed among these distances:
42 7 0.01
43 136 0.25
44 249 0.46
45 139 0.26
46 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (44 bp):
CTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGAT
Found at i:51886591 original size:128 final size:128
Alignment explanation
Indices: 51886379--51886780 Score: 626
Period size: 128 Copynumber: 3.1 Consensus size: 128
51886369 GATCGAAGTT
* * *
51886379 ACAAATCCTATCTCCTTGGTCAGTAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCTTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* *
51886444 AGTAGCGGAGCAGATCGAAGATGGCAAATATTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
* *
51886507 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* * * * *
51886572 AGTAACGGAACATATCGAAGACGGCAAATCTTATCTTCAAGAGTAATGAAGTAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
* * *
51886635 ACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
1 ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
* *
51886700 AGTAGCAGAGCAGATC-AATGACGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
66 AGTAGCGGAGCAGATCGAA-GACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
*
51886763 ACAAATCCTATTTCCCTG
1 ACAAATCCTATCTCCCTG
51886781 AAGTTGCAGT
Statistics
Matches: 248, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
127 2 0.01
128 246 0.99
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (128 bp):
ACAAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCC
Found at i:51886939 original size:105 final size:110
Alignment explanation
Indices: 51886807--51887010 Score: 283
Period size: 113 Copynumber: 1.9 Consensus size: 110
51886797 AGTTGAAGCT
* * * *
51886807 ACAAGTCTTATCTCACTGAGGTTGCAGTGTAGC-GA-T-AG-T-AAATGTTTTCTCGAAGAGCCA
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAGATAAAATGTTTCCTCGAAGAGCCA
* *
51886867 CAGATCTTATCTCTCTGAAGTTTCAGTAGAGTGGATTACACCATA
66 CAGATCTTATCTCTCTGAAGTTGCAATAGAGTGGATTACACCATA
51886912 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAAGATAGCAAATGTTTCCTCGAAGAG
1 ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACT-AAGATA--AAATGTTTCCTCGAAGAG
*
51886977 CCACAGATCTTATCTTTCTGAAGTTGCAATAGAG
63 CCACAGATCTTATCTCTCTGAAGTTGCAATAGAG
51887011 CAGACTGAAG
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
105 30 0.36
106 2 0.02
107 1 0.01
109 2 0.02
110 1 0.01
113 48 0.57
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (110 bp):
ACAAGTCTTATCTCACTAAAGTTGCAGTATAGCAGACTAAGATAAAATGTTTCCTCGAAGAGCCA
CAGATCTTATCTCTCTGAAGTTGCAATAGAGTGGATTACACCATA
Found at i:51888487 original size:3 final size:3
Alignment explanation
Indices: 51888479--51888576 Score: 72
Period size: 3 Copynumber: 31.7 Consensus size: 3
51888469 TCTAATCCTT
*** * *
51888479 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA AGC TTA TTA TGA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * **
51888527 TTA TTC TTG TTA TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA TTA TTA
1 TTA TTA TTA TTA TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
51888575 TT
1 TT
51888577 TACCCACTTA
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
2 1 0.01
3 67 0.91
4 3 0.04
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:51888833 original size:25 final size:27
Alignment explanation
Indices: 51888782--51888842 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51888772 AGGCTTTATA
*
51888782 ATTTATATATATACATAGATATGCATAT
1 ATTT-TATATATACATACATATGCATAT
* *
51888810 TTTTTATATGTACATACAT-T-CATAT
1 ATTTTATATATACATACATATGCATAT
51888835 ATTTTATA
1 ATTTTATA
51888843 ATTTATAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 12 0.41
26 1 0.03
27 13 0.45
28 3 0.10
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATATATACATACATATGCATAT
Found at i:51890321 original size:54 final size:54
Alignment explanation
Indices: 51890263--51890429 Score: 153
Period size: 54 Copynumber: 3.1 Consensus size: 54
51890253 ACAACCTTTT
*
51890263 ACTTATGGGACTTTACGAATCTCATGGTCT-ATCGATTT-TCGATGACGACCTTCA
1 ACTTATGGGACTTTACGAATCTCATGGTCTGAT-GATTTAT-GATAACGACCTTCA
* * * * **
51890317 ACTTACGAGACTTTACGAATCTCGTGGTCTGATGATTTATGATAATGACCTTTT
1 ACTTATGGGACTTTACGAATCTCATGGTCTGATGATTTATGATAACGACCTTCA
* * * * * *
51890371 ACTTATGGGATTTTACGAATGC-CACGGT-TCATTGATTTGTGATCACGACCTTCT
1 ACTTATGGGACTTTACGAAT-CTCATGGTCTGA-TGATTTATGATAACGACCTTCA
51890425 ACTTA
1 ACTTA
51890430 CGTGATTTTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
53 2 0.02
54 86 0.93
55 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
ACTTATGGGACTTTACGAATCTCATGGTCTGATGATTTATGATAACGACCTTCA
Found at i:51890870 original size:452 final size:447
Alignment explanation
Indices: 51889958--51890874 Score: 1078
Period size: 452 Copynumber: 2.0 Consensus size: 447
51889948 TAGTCTAATA
* * *
51889958 ATTTACGATCACGACCTTCCAGTTATGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
* * * * *
51890023 AACTGACCTTTTTGCCTTTCAGAGCAAGTTAGATGCTAGAGATGATGAATATAAGCGTGTTGAGG
66 AACTGACCTATTTGCCCTTCAGAGCAAGTGAAATGCTAGAAATGATGAATATAAGCGTGTTGAGG
*
51890088 AATAACTGACATTAAAAGGAGAATAAAGGAATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
131 AATAACTGACATTAAAAGGAGAATAAAGGAATCAATTTTGTCATATTGCCTTAGGAAGGCTGAAG
* * * * **
51890153 TTAGTTCTATTCACCATGTGTCTGAAATAAGGCTTGAAATAGATCGATTTCCTCACAAAAAACAA
196 CTAGTTCTATACACCATATGTATGAAATAAGGCTTGAAATAGATCGAGCTCCTCACAAAAAACAA
* * * *
51890218 GGAACTTTTTGAAAAACTTTAGTTGATTTACAATCACAACCTTTTACTTATGGGACTTTACGAAT
261 GGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAGACTTTACAAAT
* * * * ** * * * *
51890283 CTCATGGTCTATCGATTTTCGATGACGACCTTCAACTTACGAGACTTTACGAATCTCGTGGTCTG
326 CTCACGGTCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAATCTCGTAGTCTG
* * * * *
51890348 ATGATTTATGATAATGACCTTTTACTTATGGGATTTTACGAATGCCACGGTTCATTG
391 ATGATTTACGATAATCACCTTTTACTTATAGGATTTTACGAATGCCACGGTACACTG
** *
51890405 ATTTGTGATCACGACCTTCTACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
* *
51890470 AATTGACCTATTTGCCCTTCAGAGCAAGTGAAATGCTAGAAATGATGAATATAGGCGTGTTGAGG
66 AACTGACCTATTTGCCCTTCAGAGCAAGTGAAATGCTAGAAATGATGAATATAAGCGTGTTGA-G
* * * * *
51890535 AAGAACTCAAACTGA-ACTTGAAAGGAGGATAGCA-GTATCAATTTTGTCCTATTGCCATT-GTG
130 --GAA-T--AACTGACA-TTAAAAGGAGAATA-AAGGAATCAATTTTGTCATATTGCC-TTAG-G
* * * *
51890597 -AGGCTGAAGCTAGTTCTCTACACCATATGTATGAAATGAGGCTTGAAATGGATCGAGCTGCTCA
186 AAGGCTGAAGCTAGTTCTATACACCATATGTATGAAATAAGGCTTGAAATAGATCGAGCTCCTCA
* * * * *
51890661 -GAAAAATAAGGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACGATCTTTTACTTCTGAGA
251 CAAAAAACAAGGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAGA
* * * * *
51890725 CTTTATAAATTTCACGGTTCGCT-AATTTTCAACAACAACATTCTACTTACGAGATTTTACAAAT
316 CTTTACAAATCTCACGG-TCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAAT
** **
51890789 CTCGTAGTCT-ATTGATTTACGATAA-CATTTTTTTACTTATAGGATTTTATTAAT-CTCACGGT
380 CTCGTAGTCTGA-TGATTTACGATAATCA-CCTTTTACTTATAGGATTTTACGAATGC-CACGGT
51890851 ACACTG
442 ACACTG
*
51890857 ATTTACAATCACGACCTT
1 ATTTACGATCACGACCTT
51890875 TTATTTATTA
Statistics
Matches: 391, Mismatches: 65, Indels: 23
0.82 0.14 0.05
Matches are distributed among these distances:
447 115 0.29
448 1 0.00
450 3 0.01
451 4 0.01
452 169 0.43
453 95 0.24
454 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (447 bp):
ATTTACGATCACGACCTTCCACTTACGTGATTTTACAAATCTAGGTGTGTTGAGGAATAACTCAA
AACTGACCTATTTGCCCTTCAGAGCAAGTGAAATGCTAGAAATGATGAATATAAGCGTGTTGAGG
AATAACTGACATTAAAAGGAGAATAAAGGAATCAATTTTGTCATATTGCCTTAGGAAGGCTGAAG
CTAGTTCTATACACCATATGTATGAAATAAGGCTTGAAATAGATCGAGCTCCTCACAAAAAACAA
GGAACTTTCTGAAAAAATTTAGTTGATTTACAATCACAACCTTTTACTTATGAGACTTTACAAAT
CTCACGGTCGATCAATTTTCAACAACAACATTCAACTTACGAGACTTTACAAATCTCGTAGTCTG
ATGATTTACGATAATCACCTTTTACTTATAGGATTTTACGAATGCCACGGTACACTG
Found at i:51890877 original size:54 final size:54
Alignment explanation
Indices: 51890819--51890952 Score: 157
Period size: 53 Copynumber: 2.5 Consensus size: 54
51890809 GATAACATTT
*
51890819 TTTTACTTATAGGATTTTATTAATCTCACGGTAC-ACTGATTTACAATCACGACC
1 TTTTACTTATAGGATTTTATGAATCTCACGGT-CTACTGATTTACAATCACGACC
* * *
51890873 TTTTATTTATTA-GA-TTTATGAATCTCACGGTCTATTGATTTACAATTACGACC
1 TTTTACTTA-TAGGATTTTATGAATCTCACGGTCTACTGATTTACAATCACGACC
* * **
51890926 CTCTACTTACGGGATTTTATGAATCTC
1 TTTTACTTATAGGATTTTATGAATCTC
51890953 GTGATCCTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
52 1 0.01
53 42 0.63
54 22 0.33
55 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.42
Consensus pattern (54 bp):
TTTTACTTATAGGATTTTATGAATCTCACGGTCTACTGATTTACAATCACGACC
Found at i:51890985 original size:54 final size:54
Alignment explanation
Indices: 51890927--51891059 Score: 171
Period size: 54 Copynumber: 2.5 Consensus size: 54
51890917 ATTACGACCC
* *
51890927 TCTACTTACGGGATTTTATGAATCTCGTGATCCTCTAATTTAAGATAAT-GAACT
1 TCTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAGAT-ATCGAACA
* * *
51890981 TCTACTTACAGGGATTTT-TGAATCTCGTGATCCGCTAATTTATGATCTCGACCA
1 TCTACTTAC-GGGATTTTATGAATCTCGTGATCCGCTAATTTAAGATATCGAACA
* *
51891035 TCTAATTACGTGATTTTATGAATCT
1 TCTACTTACGGGATTTTATGAATCT
51891060 AAGTGTGTTG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.12
54 53 0.77
55 8 0.12
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (54 bp):
TCTACTTACGGGATTTTATGAATCTCGTGATCCGCTAATTTAAGATATCGAACA
Found at i:51891447 original size:54 final size:54
Alignment explanation
Indices: 51891305--51891502 Score: 170
Period size: 54 Copynumber: 3.7 Consensus size: 54
51891295 AAACTTCATT
* * * * * * *
51891305 TGATTTACAATCACGACCTTTAACTT-CTGGGACTTTATGAATCTCA-CAGTCCAC
1 TGATTTACGATAACGACCTTTTACTTAC-AGGATTTTACGAATCTCATGA-TCCAC
* * * * * * * *
51891359 TGATTTTCGATGACGACCTTCTAATTA-TGAGATTTTACGAATCTCGTGGTCTAC
1 TGATTTACGATAACGACCTTTTACTTACAG-GATTTTACGAATCTCATGATCCAC
* *
51891413 TGATTTACGATAATGACCTTTTA-TATACAGGATTTTACTAATCTCATGATCCAC
1 TGATTTACGATAACGACCTTTTACT-TACAGGATTTTACGAATCTCATGATCCAC
*
51891467 TGATTTATGATAACGACCTTTTACTTACAGGATTTT
1 TGATTTACGATAACGACCTTTTACTTACAGGATTTT
51891503 GCAAATCCCA
Statistics
Matches: 114, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
53 2 0.02
54 110 0.96
55 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (54 bp):
TGATTTACGATAACGACCTTTTACTTACAGGATTTTACGAATCTCATGATCCAC
Found at i:51891447 original size:612 final size:612
Alignment explanation
Indices: 51890241--51891493 Score: 1489
Period size: 612 Copynumber: 2.0 Consensus size: 612
51890231 AAACTTTAGT
* * * * *
51890241 TGATTTACAATCACAACCTTTTACTTATGGGACTTTACGAATCTCATGGTCTATCGATTTTCGAT
1 TGATTTACAATCACGACCTTTTACTTATGAGACTTTACGAATCTCACGGTCTATCGATTTACAAT
* * * * * *
51890306 GACGACCTTCAACTTACGAGACTTTACGAATCTCGTGGTCTGATGATTTATGATAATGACCTTTT
66 GACGACCCTCAACTTACGAGACTTTACGAATCTCGTGATCTGATAATTTAAGATAATGAACTTCT
* * * * * * *
51890371 ACTTATGGGATTTTACGAATGCCACGGTTCATTGATTTGTGATCACGACCTTCTACTTACGTGAT
131 ACTTAAGGGATTTTACGAAT-CCACGGTCCACTAATTTATGATCACGACCATCTAATTACGTGAT
* * * * * *
51890436 TTTACAAATCTAGGTGTGTTGAGGAATAACTCAAAATTGACCTATTTGCCCTTCAGAGCAAGTGA
195 TTTACAAATCTAAGTGTGTTGAGGAAGAACTCAAAACTGACCTATCTACCCTTCAGAACAAGTGA
51890501 AATGCTAGAAATGATGAATATAGGCGTGTTGAGGAAGAACTCAAACTGAACTTGAAAGGAGGATA
260 AATGCTAGAAATGATGAATATAGGCGTGTTGAGGAAGAACTCAAACTGAACTTGAAAGGAGGATA
* * * *
51890566 GCAGTATCAATTTTGTCCTATTGCCATTGTGAGGCTGAAGCTAGTTCTCTACACCATATGTATGA
325 GCAGTATCAATTTTGTCATATTGACATTGTGAAGCTGAAGCTAGTGCTCTACACCATATGTATGA
* * * * *
51890631 AATGAGGCTTGAAATGGATCGAGCTGCTCAGAAAAATAAGGAACTTTCTGAAAAAATTTAGTTGA
390 AATGAGGCTTGAAATAGAGCGAGCTGCTCAGAAAAATAAGAAAATTTCTGAAAAAATTCAGTTGA
* * * * * *
51890696 TTTACAATCACGATCTTTTACTTCTGAGACTTTATAAATTTCACGGTTCGCTAATTTTCAACAAC
455 TTTACAATCACGACCTTTAACTTCTGAGACTTTATAAATCTCACAGTCCACTAATTTTCAACAAC
* * * *
51890761 AACATTCTACTTACGAGATTTTACAAATCTCGTAGTCTATTGATTTACGATAACATTTTTTTACT
520 AACATTCTAATTACGAGATTTTACAAATCTCGTAGTCTACTGATTTACGATAACACTTTTATAC-
* * *
51890826 TATAGGATTTTATTAATCTCACGGTACAC
584 TACAGGATTTTACTAATCTCACGATACAC
* * * *
51890855 TGATTTACAATCACGACCTTTTATTTATTAGA-TTTATGAATCTCACGGTCTATTGATTTACAAT
1 TGATTTACAATCACGACCTTTTACTTATGAGACTTTACGAATCTCACGGTCTATCGATTTACAAT
* * * * * *
51890919 TACGACCCTCTACTTACGGGATTTTATGAATCTCGTGATCCT-CTAATTTAAGATAATGAACTTC
66 GACGACCCTCAACTTACGAGACTTTACGAATCTCGTGAT-CTGATAATTTAAGATAATGAACTTC
* * * *
51890983 TACTTACAGGGATTTT-TGAAT-CTCGTGATCCGCTAATTTATGATCTCGACCATCTAATTACGT
130 TACTTA-AGGGATTTTACGAATCCACG-G-TCCACTAATTTATGATCACGACCATCTAATTACGT
** * * *
51891046 GATTTTATGAATCTAAGTGTGTTGATGAAGAACT-TAAACTGACCTCTCTACCCTTCAGAACAAG
192 GATTTTACAAATCTAAGTGTGTTGAGGAAGAACTCAAAACTGACCTATCTACCCTTCAGAACAAG
** * * *
51891110 TTTAATGCTAGAGATGATGAATTTAGGCGTGTTGAGGAAGAACTCAAAACTGATCTTGAAAGGAG
257 TGAAATGCTAGAAATGATGAATATAGGCGTGTTGAGGAAGAACTC-AAACTGAACTTGAAAGGAG
* * * *
51891175 GATAG-AGGTATCAATTTTTTTATATTGACTTTGTGAAGCTGAAGCTAGTGCTCTTCACCATATG
321 GATAGCA-GTATCAATTTTGTCATATTGACATTGTGAAGCTGAAGCTAGTGCTCTACACCATATG
* * *
51891239 TCTGAAATGAGGCTTGAAA-AGAGCGATCTGCTCAGAAAAATAAGAAAATCTT-TGAAAAACTTC
385 TATGAAATGAGGCTTGAAATAGAGCGAGCTGCTCAGAAAAATAAGAAAAT-TTCTGAAAAAATTC
* * * *
51891302 ATTTGATTTACAATCACGACCTTTAACTTCTGGGACTTTATGAATCTCACAGTCCACTGATTTTC
449 AGTTGATTTACAATCACGACCTTTAACTTCTGAGACTTTATAAATCTCACAGTCCACTAATTTTC
* ** * * * * * *
51891367 GATGACGACCTTCTAATTATGAGATTTTACGAATCTCGTGGTCTACTGATTTACGATAATGACCT
514 AACAACAACATTCTAATTACGAGATTTTACAAATCTCGTAGTCTACTGATTTACGATAA-CA-CT
* *
51891432 TTTATA-TACAGGATTTTACTAATCTCATGATCCAC
577 TTTATACTACAGGATTTTACTAATCTCACGATACAC
** *
51891467 TGATTTATGATAACGACCTTTTACTTA
1 TGATTTACAATCACGACCTTTTACTTA
51891494 CAGGATTTTG
Statistics
Matches: 534, Mismatches: 96, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
611 3 0.01
612 252 0.47
613 235 0.44
614 44 0.08
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (612 bp):
TGATTTACAATCACGACCTTTTACTTATGAGACTTTACGAATCTCACGGTCTATCGATTTACAAT
GACGACCCTCAACTTACGAGACTTTACGAATCTCGTGATCTGATAATTTAAGATAATGAACTTCT
ACTTAAGGGATTTTACGAATCCACGGTCCACTAATTTATGATCACGACCATCTAATTACGTGATT
TTACAAATCTAAGTGTGTTGAGGAAGAACTCAAAACTGACCTATCTACCCTTCAGAACAAGTGAA
ATGCTAGAAATGATGAATATAGGCGTGTTGAGGAAGAACTCAAACTGAACTTGAAAGGAGGATAG
CAGTATCAATTTTGTCATATTGACATTGTGAAGCTGAAGCTAGTGCTCTACACCATATGTATGAA
ATGAGGCTTGAAATAGAGCGAGCTGCTCAGAAAAATAAGAAAATTTCTGAAAAAATTCAGTTGAT
TTACAATCACGACCTTTAACTTCTGAGACTTTATAAATCTCACAGTCCACTAATTTTCAACAACA
ACATTCTAATTACGAGATTTTACAAATCTCGTAGTCTACTGATTTACGATAACACTTTTATACTA
CAGGATTTTACTAATCTCACGATACAC
Found at i:51891527 original size:54 final size:54
Alignment explanation
Indices: 51891415--51891531 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 54
51891405 TGGTCTACTG
* * * ** * *
51891415 ATTTACGATAATGACCTTTTATATACAGGATTTTACTAATCTCATGATCCACTG
1 ATTTACGATAACGACCTTTTATATACAGGATTTTACAAATCCCACAATACACTA
* * *
51891469 ATTTATGATAACGACCTTTTACT-TACAGGATTTTGCAAATCCCACAATACGCTA
1 ATTTACGATAACGACCTTTTA-TATACAGGATTTTACAAATCCCACAATACACTA
51891523 ATTTACGAT
1 ATTTACGAT
51891532 CGCAACCTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (54 bp):
ATTTACGATAACGACCTTTTATATACAGGATTTTACAAATCCCACAATACACTA
Found at i:51891618 original size:54 final size:55
Alignment explanation
Indices: 51891573--51891703 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 55
51891563 CTTGCAGTCC
* * * *
51891573 GCTGATTTATGATCAAGACCTTCCT-TTTACAAGATCTTACGAATCTCGTGGTCT
1 GCTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCT
* * * *
51891627 GCTAATTTACGATCACGA-CTTCCTATTTACAGGATATTATGAATCTCGCGGTCT
1 GCTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCT
51891681 GCTGATTTAAGATCACGACCTTC
1 GCTGATTTAAGATCACGACCTTC
51891704 TACTTACGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
53 6 0.09
54 56 0.85
55 4 0.06
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (55 bp):
GCTGATTTAAGATCACGACCTTCCTATTTACAAGATATTACGAATCTCGCGGTCT
Found at i:51891726 original size:54 final size:54
Alignment explanation
Indices: 51891551--51891726 Score: 153
Period size: 54 Copynumber: 3.3 Consensus size: 54
51891541 TTATTTATAG
* * * * *
51891551 GGATA-TACAAATCTTGCAGTCCGCTGATTTATGATCAAGACCTTCCT-TTTAC
1 GGATATTACAAATCTCGCGGTCTGCTGATTTAAGATCACGACCTTCCTATTTAC
* * * * * *
51891603 AAGATCTTACGAATCTCGTGGTCTGCTAATTTACGATCACGA-CTTCCTATTTAC
1 -GGATATTACAAATCTCGCGGTCTGCTGATTTAAGATCACGACCTTCCTATTTAC
** *
51891657 AGGATATTATGAATCTCGCGGTCTGCTGATTTAAGATCACGACCTT-CTACTTAC
1 -GGATATTACAAATCTCGCGGTCTGCTGATTTAAGATCACGACCTTCCTATTTAC
* *
51891711 GTTATTTTACAAATCT
1 G-GATATTACAAATCT
51891727 AGGTGTGTTA
Statistics
Matches: 98, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
53 10 0.10
54 85 0.87
55 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (54 bp):
GGATATTACAAATCTCGCGGTCTGCTGATTTAAGATCACGACCTTCCTATTTAC
Found at i:51892453 original size:54 final size:53
Alignment explanation
Indices: 51892386--51892560 Score: 199
Period size: 54 Copynumber: 3.3 Consensus size: 53
51892376 TTGCTTTTTG
* *
51892386 GATTTTACGAATCTTATGGTCCGTTAATTTACGATCATGACCTTCTACTTATGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGATCA-GACCTTCTACTTATGA
* * * * * *
51892440 GATTTTACAAATCTCGCGGTCCGTTGATTTACAATC-GCACCTTCTACCTACGA
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGATCAG-ACCTTCTACTTATGA
* * * * *
51892493 GATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACGACCTTTTACTTATGT
1 GATTTTACGAATCTCACGGTCCGTTAATTTACGATCA-GACCTTCTACTTATGA
51892547 GATTTTACGAATCT
1 GATTTTACGAATCT
51892561 AGATGTGTTG
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 42 0.42
54 55 0.56
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (53 bp):
GATTTTACGAATCTCACGGTCCGTTAATTTACGATCAGACCTTCTACTTATGA
Found at i:51892551 original size:380 final size:378
Alignment explanation
Indices: 51891793--51892589 Score: 868
Period size: 380 Copynumber: 2.1 Consensus size: 378
51891783 GCTAGAGATG
* * * * * * *
51891793 ATGAATGTAGATGTGTTGAGGAAGAACTTAAAACTGTCCTTTAAATAAGGAGGATAGAGGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * *
51891858 ATTTTGTTATATTGCCTTTGTGAAGCTGAAGCTAGTTCTCTTACCATAAATCTGAAATGAGGCTT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACAAATCTGAAATGAGGCTT
* * * * **
51891923 AAAATATATCAATCTGCTCAGACAAACAAGAAACTTTTTGAAAAGCTTCAGTTGATTTACAATCA
131 AAAATATATAAATCTACTCAGAAAAACAAGAAACTTTTTAAAAAAATTCAGTTGATTTACAATCA
* * * * *
51891988 TGACTTTTTACTTACATGATTTTATGAATCTCACGATCTACAAATTTACGATGAGAACCTTCTCC
196 CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
* * * *
51892053 TTATGGGATTTTACAAATCTCATGATTCGCTGATTTACTATAATGACCTTCTACTAACGGGACTT
261 TTATGAGATTTTACAAATCTCACGATCCGCTGATTTAC--TAATGACCTTCTACTAACGAGACTT
* * * * *
51892118 TATGAATATCACAGTCTACTGATTTACAATCATGACCTTCTACTTCCGTGATTTT
324 TACGAATATCACAGTCCACTAATTTACAATCACGACCTTCTACTTACGTGATTTT
51892173 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
* * * * *
51892238 ATTTTGTTACATTGCCTCTGTGAGGCTGAAGCTAGTTCTCATCATCACACATTTTAAATGAGGCT
66 ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTC-TCACCACAAATCTGAAATGAGGCT
* * * * *
51892303 TCAAAT-TGA-AAGATCTACTCAGAAAAATAAGGAATTTTTTAAAAAAATTTAGTTGATTTACAA
130 TAAAATAT-ATAA-ATCTACTCAGAAAAACAAGAAACTTTTTAAAAAAATTCAGTTGATTTACAA
* * ** * * * ***
51892366 TCACGATTTTTTGCTT-TTTGGATTTTACGAATCTTATGGTCCGTTAATTTACGATCATG-ACCT
193 TCACGACTTTTTACTTACAT-GATTTTACGAATCTCACGATCCACAAATTTACGATCA-GAACCT
* * *
51892429 TCTACTTATGAGATTTTACAAATCTCGCGGTCCGTTGATTTAC-AATCGCACCTTCTACCT-ACG
256 TCTACTTATGAGATTTTACAAATCTCACGATCCGCTGATTTACTAAT-G-ACCTTCTA-CTAACG
* * * * ** * * *
51892492 AGATTTTACGAATCTCACGGTCCGCTAATTTACGGTTACGACCTTTTACTTATGTGATTTT
318 AGACTTTACGAATATCACAGTCCACTAATTTACAATCACGACCTTCTACTTACGTGATTTT
* * *
51892553 ACGAATCTAGATGTGTTGAGAAATAACTCAAAACTGA
1 ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGA
51892590 TATCTTTTTC
Statistics
Matches: 343, Mismatches: 66, Indels: 16
0.81 0.16 0.04
Matches are distributed among these distances:
378 3 0.01
379 1 0.00
380 189 0.55
381 149 0.43
382 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (378 bp):
ATGAATCTAGATGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAGAAGGATAGAAGAATCA
ATTTTGTTACATTGCCTCTGTGAAGCTGAAGCTAGTTCTCTCACCACAAATCTGAAATGAGGCTT
AAAATATATAAATCTACTCAGAAAAACAAGAAACTTTTTAAAAAAATTCAGTTGATTTACAATCA
CGACTTTTTACTTACATGATTTTACGAATCTCACGATCCACAAATTTACGATCAGAACCTTCTAC
TTATGAGATTTTACAAATCTCACGATCCGCTGATTTACTAATGACCTTCTACTAACGAGACTTTA
CGAATATCACAGTCCACTAATTTACAATCACGACCTTCTACTTACGTGATTTT
Found at i:51892905 original size:54 final size:54
Alignment explanation
Indices: 51892807--51893064 Score: 198
Period size: 54 Copynumber: 4.8 Consensus size: 54
51892797 AAAACTTCAA
* * ** *
51892807 TTGATTTAC-AGTCACGACCTTTTACTT-CTGAGACATTACGAATCTCACGGTCCG
1 TTGATTTACTA-TAACGACCTTCTACTTAC-GAGATTTTACGAATCTCACGGTCTG
* * * * *
51892861 TTGATTTTCTATGACGACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTA
1 TTGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTG
* * * * * *
51892915 CTGATTTACAATAACGACCTTTTAATTATGAGATTTTACGAACCTCACGGTCTG
1 TTGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTG
* * ** * * * * * *
51892969 TTGATTTACTATCATGACCTTCTACAAATGGGATTTTTCGAATCTTATGGTCTA
1 TTGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTG
* * * *
51893023 CTGATTTACGATCACGACCTTCTCCTTAC-ATGATTTTACGAA
1 TTGATTTACTATAACGACCTTCTACTTACGA-GATTTTACGAA
51893065 AGTAGGCGTG
Statistics
Matches: 158, Mismatches: 43, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
54 156 0.99
55 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (54 bp):
TTGATTTACTATAACGACCTTCTACTTACGAGATTTTACGAATCTCACGGTCTG
Found at i:51893004 original size:108 final size:108
Alignment explanation
Indices: 51892808--51893043 Score: 301
Period size: 108 Copynumber: 2.2 Consensus size: 108
51892798 AAACTTCAAT
* * * * *
51892808 TGATTTACAGTCACGACCTTTTACTTCTGAGACATTACGAATCTCACGGTCCGTTGATTTTCTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
* **
51892873 GACGACCTTCTACTTACGAGATTTTACAAATCTCATGGTCTAC
66 CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
* ** *
51892916 TGATTTACAATAACGACCTTTTAATTATGAGATTTTACGAACCTCACGGTCTGTTGATTTACTAT
1 TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
* * * * * *
51892981 CATGACCTTCTACAAATGGGATTTTTCGAATCTTATGGTCTAC
66 CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
*
51893024 TGATTTACGATCACGACCTT
1 TGATTTACAATCACGACCTT
51893044 CTCCTTACAT
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (108 bp):
TGATTTACAATCACGACCTTTTAATTATGAGACATTACGAACCTCACGGTCCGTTGATTTACTAT
CACGACCTTCTACAAACGAGATTTTACAAATCTCATGGTCTAC
Found at i:51894007 original size:54 final size:54
Alignment explanation
Indices: 51893904--51894025 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
51893894 CTAAATATGA
* ** * *
51893904 GATTTTACGAACCTCGTGGTCTGTTGATTTACGATAATGACATTTTACTTACGG
1 GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTACAG
* * *
51893958 GATTTTACGAATCTCTTGGTCTAATGATTTACGATCATGACCA-TCTACTTATAG
1 GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGA-CATTCTACTTACAG
*
51894012 GATTTTATGAATCT
1 GATTTTACGAATCT
51894026 TCTGTTCCGT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 56 0.97
55 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (54 bp):
GATTTTACGAATCTCGTGGTCTAATGATTTACGATAATGACATTCTACTTACAG
Found at i:51894522 original size:54 final size:54
Alignment explanation
Indices: 51894362--51894536 Score: 165
Period size: 54 Copynumber: 3.2 Consensus size: 54
51894352 ACTTTCTAGA
* * * *
51894362 TTTACGAATCTCACGGTCCATTAATTTACGATCATGACCTTCTACTTACGAGAT
1 TTTACGAATCTCACAGTCCATTAATTTACGATCATGACCTTCTACCTATGGGAT
* ** * ** ** *
51894416 TTTATGAATCTCTTGATTTGA-TAATTTTAAAATCATGATCTTCTA-CTAATGGGAT
1 TTTACGAATCTC-ACAGTCCATTAA-TTTACGATCATGACCTTCTACCT-ATGGGAT
* *
51894471 TTTACAAATCTCACAGTCCATTGATTTACGATCATGACCTTCTACCTATGGGAT
1 TTTACGAATCTCACAGTCCATTAATTTACGATCATGACCTTCTACCTATGGGAT
*
51894525 TTTATGAATCTC
1 TTTACGAATCTC
51894537 GTGGTCTGCT
Statistics
Matches: 90, Mismatches: 26, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
54 52 0.58
55 38 0.42
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (54 bp):
TTTACGAATCTCACAGTCCATTAATTTACGATCATGACCTTCTACCTATGGGAT
Found at i:51894552 original size:54 final size:54
Alignment explanation
Indices: 51894383--51894555 Score: 152
Period size: 54 Copynumber: 3.2 Consensus size: 54
51894373 CACGGTCCAT
* * * * * *
51894383 TAATTTACGATCATGACCTTCTACTTACGAGATTTTATGAATCTCTTGATTTGA
1 TAATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCATGGTCTGA
** * ** ** *
51894437 TAATTTTAAAATCATGATCTTCTA-CTAATGGGATTTTACAAATCTCACAGTC-CA
1 TAA-TTTACGATCATGACCTTCTACCT-ATGGGATTTTATGAATCTCATGGTCTGA
* * *
51894491 TTGATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCGTGGTCTGC
1 -TAATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCATGGTCTGA
51894546 TAATTTACGA
1 TAATTTACGA
51894556 CCGCGACCTT
Statistics
Matches: 88, Mismatches: 26, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
54 51 0.58
55 37 0.42
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (54 bp):
TAATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCATGGTCTGA
Found at i:51894933 original size:54 final size:54
Alignment explanation
Indices: 51894869--51895008 Score: 145
Period size: 54 Copynumber: 2.6 Consensus size: 54
51894859 CTTTTGGGTC
* * *** * *
51894869 TTTACGAATCTCATTGTCTGCTGATTTTTTATGACAACCTTCTAAATATGAGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
* * * **
51894923 TTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTACGAGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
* **
51894977 TTTACAAATCTCCTGGTCCACTGATTTACGAT
1 TTTACAAATCTCATGGTCTGCTGATTTACGAT
51895009 CACGACCATC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (54 bp):
TTTACAAATCTCATGGTCTGCTGATTTACGATAACAACCTTCTAAATACGAGAT
Found at i:51894985 original size:506 final size:506
Alignment explanation
Indices: 51892386--51896032 Score: 3209
Period size: 506 Copynumber: 7.2 Consensus size: 506
51892376 TTGCTTTTTG
** * * * * *
51892386 GATTTTACGAATCTTATGGTCCGTTAATTTACGATCATGACCTTCTACTTATGAGATTTTACAAA
1 GATTTTACGAATCTCGTGGTCTGCTAATTTACGATAACGACCTTCTACTTACGAGATTTTACAAA
* * * * * *
51892451 TCTCGCGGTCCGTTGATTTACAATC--GCACCTTCTACCTA-CGAGATTTTACGAATCTCACGGT
66 TCTCACGGTCCATTGATTTACGATCATG-ACCTTCTACCTATAG-GATTTTATGAATCTCATGGT
* * * * * ** *
51892513 CCGCTAATTTACGGTTACGACCTTTTACTTATGTGATTTTACGAATCTAGATGTGTTGAGAAATA
129 CTGCTTATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
** ** * * * * * *
51892578 ACTCAAAACTGATATCTTTTTCCTTTA-ATGCAAGATAGATGCTAAAGATCATGAATATAGGTGT
194 ACTCAAAACTGACCTCTTTACCCTTCAGA-GCAAGCTAAATGCTAGAGATGATGAATATAGGCGT
* *
51892642 GCTT-AGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATTAATTTTTTTATATTGCC
258 G-TTGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCC
* ** * * * *
51892706 TTTGTGAGGCTAAAGCTAGTTCTCTTCACCGTACGTTTGAAATGAGGCTTGAAATGGGTCAATCT
322 TTTGTGA-GCTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCT
* * * * * * * *
51892771 GTTCATAAGAAA-AAGGAACTTTCTGAAAAACTTCAATTGATTTACAGTCACGACCTTTTACTTC
386 GCTCAGAA-AAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTT
* * * * *
51892835 T-GAGACATTACGAATCTCACGGTCCGTTGATTTTCTATGACGACCTTCTACTTACGA
450 TAG-GTCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * * * * *
51892892 GATTTTACAAATCTCATGGTCTACTGATTTACAATAACGACCTTTTAATTATGAGATTTTACGAA
1 GATTTTACGAATCTCGTGGTCTGCTAATTTACGATAACGACCTTCTACTTACGAGATTTTACAAA
* ** * ** * *
51892957 CCTCACGGTCTGTTGATTTACTATCATGACCTTCTACAAATGGGATTTT-TCGAATCTTATGGTC
66 TCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTAT-GAATCTCATGGTC
* * * ** ** *
51893021 TACTGATTTACGATCACGACCTTCTCCTTACATGATTTTACGAAAGTAGGCGTGTTGAAGAATAA
130 TGCTTATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGCGTGTTGAGGAATAA
* * * *
51893086 CTCAAAACTGACCT-TTCTACCCTTCAAAGCAAGTTAGAA-GATAGAGATGATGAATATAGGTGT
195 CTCAAAACTGACCTCTT-TACCCTTCAGAGCAAGCTA-AATGCTAGAGATGATGAATATAGGCGT
* * * * * * * *
51893149 GTTTAGGAAGAACGCAAAAGTGACCTTGAAAGAAGGAGGATAAATGAATCAATTTTGTTAGATTT
258 GTTGAGGAAGAACTCAAAACTGACCTTG--A-AAGGAGGATAGAGGTATCAATTTTGTTATATTG
* * ** * *
51893214 TCTTTGTGAAGCTGAAGCTAGTTCTCAAAATGATACATTTGAAATGAGGTTTGTAATGGATCGAT
320 CCTTTGTG-AGCTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGAT
* * * ** * * * *
51893279 TTGCTCAGAAAAACAATGAAATTTCTTTAAAGTTTCAATTGATTTACAATCATAACCTTTTACTT
384 CTGCTCAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTT
* * * * * *
51893344 TCTAGAT-TTTACGAATATCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGA
449 T-TAGGTCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * * * * * * * * *
51893402 GATTTTACGAATCTAGCGATTTGCCAATTTTAAGGTCATGATCTTCTACTAATGGGATTTTACAA
1 GATTTTACGAATCTCGTGGTCTGCTAA-TTTACGATAACGACCTTCTACTTACGAGATTTTACAA
** * * *
51893467 GCCTCGCGGTCCATTGATTTATGATCATGA-C--CTACCTACT-GGATTTTATGAATCTTATGGT
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTA-TAGGATTTTATGAATCTCATGGT
* * ** * * *
51893528 CTACTTATTTACAATCACGACCTTCTACTTACATGCTTCTACGAATCTAGGCATGTTGAGGAATA
129 CTGCTTATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
* * *
51893593 ACTCAAAACTGACCTCTTTGCCCTTCAGAGCAAGCTAGATGCTAGAGATGATGAATATAGGCATG
194 ACTCAAAACTGACCTCTTTACCCTTCAGAGCAAGCTAAATGCTAGAGATGATGAATATAGGCGTG
* * * ** * *
51893658 TTGAGAAAGAACTC-AAACTAAACTTGAAAAAAAGATAGAGGTATCAATTTTGTTATATTACCTT
259 TTGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTT
* * ** * * * * *
51893722 TGTAAGGTAGAAGCTAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGCATCAATCTGC
324 TGTGAGCT-GAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGC
* * **
51893787 T-A-AAAAACAAGGAACTTTCTGAAAAACTTTAGTTGATTTACAGTCATGACCTTTTACTTCCAG
388 TCAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTTTAG
* * * ** *
51893850 GTTTTTACGAATCTCATGGTCCACTGATTTTTTATGACAACCTTCTAAATATGA
453 GTCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * * * *
51893904 GATTTTACGAACCTCGTGGTCTGTTGATTTACGATAATGACATTTTACTTACGGGATTTTACGAA
1 GATTTTACGAATCTCGTGGTCTGCTAATTTACGATAACGACCTTCTACTTACGAGATTTTACAAA
** * * * * *
51893969 TCTCTTGGTCTAATGATTTACGATCATGACCATCTACTTATAGGATTTTATGAATCTTC-TGTTC
66 TCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATC-TCATGGTC
* * * * * *
51894033 CGTTTATTTACAACCACGACCTTCAACTTACT-TGATTTTACGAATCTAGGCATGTTGAGGAATA
130 TGCTTATTTACGATCACGACCTTCTACTTA-TGTGATTTTACGAATCTAGGCGTGTTGAGGAATA
* * * * * *
51894097 ACTCAAAATTGACCT-TTCTACCTTTTAGAGCAAGTTAGAA-GCTAGAGATGATGAATATAGACA
194 ACTCAAAACTGACCTCTT-TACCCTTCAGAGCAAGCTA-AATGCTAGAGATGATGAATATAGGCG
* * * * *
51894160 TGCTGAGAAAGAACTCAAAATTGACCTTGAAAGAAGGAGGATAGAGGAATCAATTTTGTTACATT
257 TGTTGAGGAAGAACTCAAAACTGACCTTG--A-AAGGAGGATAGAGGTATCAATTTTGTTATATT
** * * *
51894225 TTCTTTGTGAGGCTGGAGCTAGTTTTCAACACCATACATTTGAAATGAGGCTTCAAATGGATCGA
319 GCCTTTGTGA-GCTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGA
* ** * * ** *
51894290 TCTACTCAGAAAAACAAGGAACTTAATTAAAAGTTTTAGTTTTTTTATAATCATGACCTTTTACT
383 TCTGCTCAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACT
* ** * *** * **
51894355 TTCTA-G-ATTTACGAATCTCACGGTCCATTAATTTACGATCATGACCTTCTACTTACGA
448 TT-TAGGTCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * ** * * * * * *
51894413 GATTTTATGAATCTCTTGATTTGATAATTTTAAAATCATGATCTTCTACTAATGGGATTTTACAA
1 GATTTTACGAATCTCGTGGTCTGCTAA-TTTACGATAACGACCTTCTACTTACGAGATTTTACAA
* * *
51894478 ATCTCACAGTCCATTGATTTACGATCATGACCTTCTACCTATGGGATTTTATGAATCTCGTGGTC
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTCATGGTC
* * * * ** *
51894543 TGCTAATTTACGACCGCGACCTTTTACTTATGTTCTTTTAGGAATCTAGGCGTGTTGAGGAATAA
130 TGCTTATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGCGTGTTGAGGAATAA
* * * * * *
51894608 CTCAAAACTGACCTCTTTGCCCTTTAGAGAAAGCTAAATGCTAAAGATGATGACTATAAGCGTGT
195 CTCAAAACTGACCTCTTTACCCTTCAGAGCAAGCTAAATGCTAGAGATGATGAATATAGGCGTGT
* * *
51894673 TGAGGAAGAACTC-AAACTAACCTTGAAAGGAGGATAGGGGTATCAATTTTTTTATATTGCCTTT
260 TGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTT
* ** * * * * * * * *
51894737 GTAATGCTGAAGCTAGTTCTCTTCGCAAAACGTCTGAAATGAGGCTTGAAATGCATTGATCTGTT
325 GTGA-GCTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGCT
* * * *
51894802 CAGAAAAATAAGGAACTTTATGAAAAATTTTAGTTAATTTACAATCATGACCTTTTACTTTTGGG
389 CAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTTTAGG
** * ** *
51894867 TCTTTACGAATCTCATTGTCTGCTGATTTTTTATGACAACCTTCTAAATATGA
454 TCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * *
51894920 GATTTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTACGAGATTTTACAAA
1 GATTTTACGAATCTCGTGGTCTGCTAATTTACGATAACGACCTTCTACTTACGAGATTTTACAAA
* * * * *
51894985 TCTC-CTGGTCCACTGATTTACGATCACGACCATCTACTTATAGGATTTTACGAATCTTCTAT--
66 TCTCAC-GGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATC-TC-ATGG
* * * * *
51895047 TCCG-TTGATTTACAATCACGACCCTCAACTTACT-TGATTTTACGAATCTAGGCATGTTGAGGA
128 TCTGCTT-ATTTACGATCACGACCTTCTACTTA-TGTGATTTTACGAATCTAGGCGTGTTGAGGA
* *
51895110 ATAACTCAAAACTGACCT-TTCTACCCTTCAGAGCAAGTTAGAA-GCTAGAGATGATGGATATAG
191 ATAACTCAAAACTGACCTCTT-TACCCTTCAGAGCAAGCTA-AATGCTAGAGATGATGAATATAG
* * * * * *
51895173 GTGTGTTGAGGAAGAACTCAAAATTGACATTAAAAGGAGGATAGAGGAATCAATTTTGTTACATT
254 GCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATT
* * * * * *
51895238 GTCTTTGTGAGGTTAGAGCTAGTTCTCAACACCATACATTTGAAATGAGGTTTGTAATGGATAGA
319 GCCTTTGTGAGCTGA-AGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGA
* * * * * * *
51895303 TCTGCTCAGAAAAACAATGAAATTTCTTAAAAGTTTCAATTGATTTACAATCATGAACTTTTA-T
383 TCTGCTCAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACT
* * * * * * *
51895367 TTTTGGAT-TTTACGAATCTCACAGTCCGTTGATTTATGATCACGACCTTCTACTTACGA
448 TTTAGG-TCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * * *
51895426 GATTTTATGAATCTCGTGATTTGCTAATTTTAAGATCACGATCTTCTACTAACGAGATTTTACAA
1 GATTTTACGAATCTCGTGGTCTGCTAA-TTTACGATAACGACCTTCTACTTACGAGATTTTACAA
* * * * *
51895491 ATCTCGCGGTTCC-CTAATTTACGATCATGACCTTCTACCCATAGGATTTTATGAA-C-CTTGCA
65 ATCTCACGG-TCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTCATG--
** * * * * * *
51895553 GTCTATTTATTTACGATGACAACTTTTTACTTACGT-ACTTTTATGAATCTAGGCGTGTTGAGGA
127 GTCTGCTTATTTACGATCACGACCTTCTACTTATGTGA-TTTTACGAATCTAGGCGTGTTGAGGA
* * * *
51895617 ATAACTCAAAACTGACCTCTTTGCCCTTCAGAGCAAGCTGATTGCTAGAGATGATGAATATAAGC
191 ATAACTCAAAACTGACCTCTTTACCCTTCAGAGCAAGCTAAATGCTAGAGATGATGAATATAGGC
* * *
51895682 GTGTTGAGGAAGAACTC-AAACTAAGCTTGAAAGAAGGATAGAGGTATCAATTTTGTTATATTGC
256 GTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGC
* * * * * * *
51895746 CTTTGTGAGTATGAAACTAGTTCTCAACACCATACATATGAAATGAGACTTAAAATGTATCGAAC
321 CTTTGTGAG-CTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGATC
* * * * * * * * *
51895811 TACTTAAAAAAATAAGGAACTTTGTGAAAAA-TTTAGTTGATTTACGATCACGACATTTTACTTC
385 TGCTCAGAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTT
* * * * * * *
51895875 CAGGACTATACGAATTTCATGGTCCGTTGATTTTTAATGACAACCTTCTACTTACGA
450 TAGGTCTTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
* * * * * **
51895932 GATTTTACGAATCTCATGGTCTACTGA-TTACCGATAACAACCTTTTACTTACGAGATTTTATGA
1 GATTTTACGAATCTCGTGGTCTGCTAATTTA-CGATAACGACCTTCTACTTACGAGATTTTACAA
* * * *
51895996 ATCTCATGGTCTACTGATTTTCGATCATGACCTTCTA
65 ATCTCACGGTCCATTGATTTACGATCATGACCTTCTA
51896033 TTTATGTGAT
Statistics
Matches: 2499, Mismatches: 570, Indels: 145
0.78 0.18 0.05
Matches are distributed among these distances:
501 54 0.02
502 108 0.04
503 8 0.00
504 226 0.09
505 94 0.04
506 655 0.26
507 546 0.22
508 237 0.09
509 85 0.03
510 430 0.17
511 55 0.02
512 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (506 bp):
GATTTTACGAATCTCGTGGTCTGCTAATTTACGATAACGACCTTCTACTTACGAGATTTTACAAA
TCTCACGGTCCATTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTCATGGTCT
GCTTATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGCGTGTTGAGGAATAAC
TCAAAACTGACCTCTTTACCCTTCAGAGCAAGCTAAATGCTAGAGATGATGAATATAGGCGTGTT
GAGGAAGAACTCAAAACTGACCTTGAAAGGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTG
TGAGCTGAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATGGATCGATCTGCTCA
GAAAAACAAGGAACTTTCTGAAAAATTTTAGTTGATTTACAATCATGACCTTTTACTTTTAGGTC
TTTACGAATCTCACGGTCCGCTGATTTTTTATGACAACCTTCTACTTACGA
Found at i:51895023 original size:54 final size:54
Alignment explanation
Indices: 51894918--51895095 Score: 169
Period size: 54 Copynumber: 3.3 Consensus size: 54
51894908 TTCTAAATAT
* * * * * *
51894918 GAGATTTTACAAATCTCGTGGTCTGTTGATTTACGATAACAACCTTTTACTTAC
1 GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
**
51894972 GAGATTTTACAAATCTCCTGGTCCACTGATTTACGATCACGACCATCTACTTA-
1 GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
* * * ** * * *
51895025 TAGGATTTTACGAATCTTCTATTCCGTTGATTTACAATCACGACCCTCAACTTAC
1 GA-GATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
** *
51895080 TTGATTTTACGAATCT
1 GAGATTTTACAAATCT
51895096 AGGCATGTTG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 101 0.98
55 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
GAGATTTTACAAATCTCCTGGTCCGTTGATTTACGATCACGACCATCTACTTAC
Found at i:51895508 original size:55 final size:54
Alignment explanation
Indices: 51895398--51895528 Score: 154
Period size: 55 Copynumber: 2.4 Consensus size: 54
51895388 CAGTCCGTTG
* * ** * **
51895398 ATTTATGATCACGACCTTCTACTTACGAGATTTTATGAATCTCGTGATTTGCTA
1 ATTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
* *
51895452 ATTTTAAGATCACGATCTTCTACTAACGAGATTTTACAAATCTCGCGGTTCCCTA
1 A-TTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
* *
51895507 ATTTACGATCATGACCTTCTAC
1 ATTTAAGATCACGACCTTCTAC
51895529 CCATAGGATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 19 0.30
55 45 0.70
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (54 bp):
ATTTAAGATCACGACCTTCTACTAACGAGATTTTACAAATCTCGCGATTCCCTA
Found at i:51896057 original size:29 final size:29
Alignment explanation
Indices: 51896010--51896073 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
51896000 CATGGTCTAC
* ** *
51896010 TGATTTTCGATCATGACCTTCTATTTATG
1 TGATTTACGATCACAACCTTCTACTTATG
51896039 TGATTTACGATCACAACCTTCTACTTATG
1 TGATTTACGATCACAACCTTCTACTTATG
*
51896068 GGATTT
1 TGATTT
51896074 TATGAATCTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (29 bp):
TGATTTACGATCACAACCTTCTACTTATG
Found at i:51896190 original size:54 final size:54
Alignment explanation
Indices: 51896041--51896190 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 54
51896031 TATTTATGTG
* * *
51896041 ATTTACGATCACAACCTTCTACTTATGGGATTTTATGAATCTCGCAATTCGCTA
1 ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATTCGCTA
* * ** *
51896095 ATTTAAAATAATGACCTTCTACTTACGGGGA-TTTACAAATCTCGCAA-TCTGCTA
1 ATTTACAATCACAACCTTCTACTTAC-GGGATTTTACGAATCTCGCAATTC-GCTA
* * *
51896149 ATTTACAATCACAACCTTCTAATTACGTGATTTTGCGAATCT
1 ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCT
51896191 AGGAATGTTA
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 5 0.06
54 68 0.88
55 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (54 bp):
ATTTACAATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATTCGCTA
Found at i:51896548 original size:54 final size:54
Alignment explanation
Indices: 51896482--51896620 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 54
51896472 TTCGATGACG
* * * * * *
51896482 ACCTTCTACTTACGAGATTATACAAATCTCGTTGTCTACTGATTCACAATAACA
1 ACCTTTTACTTACGAGATTATACGAATCTCATAGCCCACTGATTCACAATAACA
* * * ** *
51896536 ACCTTTTACTTAC-AGGATTTTACGAATCTCATAGCCCATTGATTTACGGTAATA
1 ACCTTTTACTTACGA-GATTATACGAATCTCATAGCCCACTGATTCACAATAACA
* *
51896590 ACCTTTTACTTATGAGATTCTACGAATCTCA
1 ACCTTTTACTTACGAGATTATACGAATCTCA
51896621 CGAAATTTTG
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 67 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (54 bp):
ACCTTTTACTTACGAGATTATACGAATCTCATAGCCCACTGATTCACAATAACA
Found at i:51896632 original size:54 final size:54
Alignment explanation
Indices: 51896574--51896676 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
51896564 TCATAGCCCA
* * * *
51896574 TTGATTTACGGTAATAACCTTTTACTTAT-GAGATTCTACGAATCTCACGAAATT
1 TTGATTTACGATAATAACCTTATACATATGGAGA-TATACGAATCTCACGAAATT
* * *
51896628 TTGATTTATGATCATAACCTTATACATATGGGGATATACGAATCTCACG
1 TTGATTTACGATAATAACCTTATACATATGGAGATATACGAATCTCACG
51896677 GTCTACTGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 38 0.93
55 3 0.07
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (54 bp):
TTGATTTACGATAATAACCTTATACATATGGAGATATACGAATCTCACGAAATT
Found at i:51896702 original size:54 final size:55
Alignment explanation
Indices: 51896629--51896749 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 55
51896619 CACGAAATTT
* **
51896629 TGATTTATGATC-ATAACCTTATACATATGGGGAT-ATACGAATCTCACGGTCTAC
1 TGATTTACGATCAATAACCTTATACATA-CAGGATCATACGAATCTCACGGTCTAC
* *** *
51896683 TGATTTACGATCAAT-ACCTTCTTTTTACAGGATCTTACGAATCTCACGGTCTAC
1 TGATTTACGATCAATAACCTTATACATACAGGATCATACGAATCTCACGGTCTAC
*
51896737 TAATTTACGATCA
1 TGATTTACGATCA
51896750 CGACCTCATA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 4 0.07
54 50 0.89
55 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (55 bp):
TGATTTACGATCAATAACCTTATACATACAGGATCATACGAATCTCACGGTCTAC
Found at i:51896764 original size:54 final size:53
Alignment explanation
Indices: 51896659--51896809 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 53
51896649 ATACATATGG
* ** *
51896659 GGATA-TACGAATCTCACGGTCTACTGATTTACGATCAATACCTTCTTTTTACA
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACC-TCTATTTACA
* *
51896712 GGATCTTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCATATTTACG
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCTC-TATTTACA
* *** *
51896766 GGATATTACAAATCTTGTGATCTACTAATTTACGATCACGACCT
1 GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCT
51896810 TTTACTTACG
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (53 bp):
GGATATTACGAATCTCACGGTCTACTAATTTACGATCACGACCTCTATTTACA
Found at i:51896819 original size:54 final size:54
Alignment explanation
Indices: 51896732--51896834 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
51896722 AATCTCACGG
*
51896732 TCTACTAATTTACGATCACGACCTCATATTTACGGGATATTACAAATCTTGTGA
1 TCTACTAATTTACGATCACGACCTCATACTTACGGGATATTACAAATCTTGTGA
** * * *
51896786 TCTACTAATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCT
1 TCTACTAATTTACGATCACGACCTCATACTTACGGGATATTACAAATCT
51896835 AGGCGTGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (54 bp):
TCTACTAATTTACGATCACGACCTCATACTTACGGGATATTACAAATCTTGTGA
Found at i:51897228 original size:54 final size:54
Alignment explanation
Indices: 51897141--51897345 Score: 178
Period size: 54 Copynumber: 3.8 Consensus size: 54
51897131 ACGATCTACC
* * * *** *
51897141 AATTTATGATGACGACCTTTTACTTATACGATTTTACGAATCTCATGGTCCACT
1 AATTTACGATAACGACCTTCTACTTACGTGATTTTACGAATCTCATGGTCCGCT
* * * * * * *
51897195 AATTTACGATAACAACCTTCTACTAACGGGATTTTATGAATATCACGTTCCGCT
1 AATTTACGATAACGACCTTCTACTTACGTGATTTTACGAATCTCATGGTCCGCT
* * * * ** * *
51897249 AATTTACAATTACGACCTTCTACTTACGTGTTTTTAAGAATCTTGTGGCCCGTT
1 AATTTACGATAACGACCTTCTACTTACGTGATTTTACGAATCTCATGGTCCGCT
* *
51897303 AATTTACGATCACGACATTCTACTTACGTGATTTT-CTGAATCT
1 AATTTACGATAACGACCTTCTACTTACGTGATTTTAC-GAATCT
51897346 ATACATGTTG
Statistics
Matches: 118, Mismatches: 32, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (54 bp):
AATTTACGATAACGACCTTCTACTTACGTGATTTTACGAATCTCATGGTCCGCT
Found at i:51897691 original size:54 final size:54
Alignment explanation
Indices: 51897626--51897739 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
51897616 TCACTTTCTG
* * * * *
51897626 GATTTTTCGAATCTCAT-GATTTGTTGATTTACGATCATGATCTTTTACTTATGA
1 GATTTTACGAATCTCATAG-TTTGCTGATTTACGATCACGATCATTTACTTAAGA
* * *
51897680 GATTTTACGAATCTCGTAGTTTGCTGATTTACGATGACGATCATTTACTTAAGG
1 GATTTTACGAATCTCATAGTTTGCTGATTTACGATCACGATCATTTACTTAAGA
51897734 GATTTT
1 GATTTT
51897740 GTGAGGCTGA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.45
Consensus pattern (54 bp):
GATTTTACGAATCTCATAGTTTGCTGATTTACGATCACGATCATTTACTTAAGA
Found at i:51898010 original size:54 final size:54
Alignment explanation
Indices: 51897941--51898049 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
51897931 GATCTAGCAA
* * * *
51897941 TCTGCTAATTTACGATAATGACCTT-TTAGTTATGGGATTTTACAAATATCACGG
1 TCTGCTAATTCACGATAACGACCTTCTT-CTTATGAGATTTTACAAATATCACGG
* * *
51897995 TCTGCTAATTCACGATGACGACCTTCTTCTTATGAGATTTTACGAATCTCACGG
1 TCTGCTAATTCACGATAACGACCTTCTTCTTATGAGATTTTACAAATATCACGG
51898049 T
1 T
51898050 TCGCTGATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
TCTGCTAATTCACGATAACGACCTTCTTCTTATGAGATTTTACAAATATCACGG
Found at i:51898586 original size:54 final size:54
Alignment explanation
Indices: 51898426--51898685 Score: 187
Period size: 54 Copynumber: 4.8 Consensus size: 54
51898416 GCGCGGTCCA
* * * * **
51898426 CTAATTTATGATGATGACCTTTTACTTATGAGATTTTATGAATCTCGCGGTTAG
1 CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCCG
* * * * * *
51898480 CTCATTTACGATGACGACCTTTTACATATGGGACTTTATGAATCTCACGATCCG
1 CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCCG
* ** * *
51898534 CTAATTTATGATCATGACTTTTTACTTATGGGATTTTACAAATATCACGATCCA
1 CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCCG
* * ** * * **** ** * *
51898588 TTGATTTATGATCACAACCTTCTAGTTACAATATTTTATGAATCTCGTGTTTCG
1 CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCCG
* ** * * *
51898642 CTGATTTACAATCATGACCTTCTACTTATAGGATTTTAAGAATC
1 CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATC
51898686 ACGTGGTTCG
Statistics
Matches: 156, Mismatches: 50, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
54 156 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (54 bp):
CTAATTTATGATCATGACCTTTTACTTATGGGATTTTATGAATCTCACGATCCG
Found at i:51899302 original size:54 final size:54
Alignment explanation
Indices: 51899021--51899303 Score: 230
Period size: 54 Copynumber: 5.2 Consensus size: 54
51899011 TACATCCGAA
* * * *
51899021 ATTTTACGAATCTTACGGTCCGCTGATTTATGATCATGACTTTCTACTTACGGG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
* * * * * * *
51899075 ATTTTACAAATATCACGGTCTGCTAATTTATGATCACAACCTACTATTTACAG-G
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTAC-GTG
* * *** * *
51899129 ATTCTATGAATCTTGTGATCCACTGATTTATGATCACGACCTTCTACTTACGTG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
* ** * * * ** * *
51899183 GTTTTAAAAATCTCACGGTCTGTTCATTTACAATCACGACCTTTTACTTA-TTAG
1 ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGT-G
* * * *
51899237 TTTTTGA-GAATCTCGCGGTCCACTGATTTATGATCACGACCTACTACTTACGTG
1 ATTTT-ACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
51899291 ATTTTACGAATCT
1 ATTTTACGAATCT
51899304 AGACGTGTTG
Statistics
Matches: 170, Mismatches: 53, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
53 3 0.02
54 164 0.96
55 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (54 bp):
ATTTTACGAATCTCACGGTCCGCTGATTTATGATCACGACCTTCTACTTACGTG
Found at i:51899303 original size:108 final size:107
Alignment explanation
Indices: 51898992--51899303 Score: 329
Period size: 108 Copynumber: 2.9 Consensus size: 107
51898982 GCTTTAGTTG
* * * * *
51898992 ATTTACAATCACGACCTTTTACATCCGAAATTTTACGAATCTTACGGTCCGCTGATTTATGATCA
1 ATTTACAATCACGACCTTTTACTTAC-AGATTTTACGAATCTTGCGGTCCACTGATTTATGATCA
* * * *
51899057 TGACTTTCTACTTACGGGATTTTACAAATATCACGGTCTGCTA
65 CGACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTA
** * ** * * * * *
51899100 ATTTATGATCACAACCTACTATTTACAGGATTCTATGAATCTTGTGATCCACTGATTTATGATCA
1 ATTTACAATCACGACCTTTTACTTACA-GATTTTACGAATCTTGCGGTCCACTGATTTATGATCA
* * * *
51899165 CGACCTTCTACTTACGTGGTTTTAAAAATCTCACGGTCTGTTC
65 CGACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTA
* * *
51899208 ATTTACAATCACGACCTTTTACTTATTAGTTTTTGA-GAATCTCGCGGTCCACTGATTTATGATC
1 ATTTACAATCACGACCTTTTACTTA-CAGATTTT-ACGAATCTTGCGGTCCACTGATTTATGATC
* *
51899272 ACGACCTACTACTTACGTGATTTTACGAATCT
64 ACGACCTTCTACTTACGTGATTTTACAAATCT
51899304 AGACGTGTTG
Statistics
Matches: 162, Mismatches: 39, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
107 1 0.01
108 159 0.98
109 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (107 bp):
ATTTACAATCACGACCTTTTACTTACAGATTTTACGAATCTTGCGGTCCACTGATTTATGATCAC
GACCTTCTACTTACGTGATTTTACAAATCTCACGGTCTGCTA
Found at i:51900454 original size:54 final size:53
Alignment explanation
Indices: 51900396--51900578 Score: 197
Period size: 54 Copynumber: 3.4 Consensus size: 53
51900386 TACGATAATG
* * * * *
51900396 ACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTACTAATTTACAATGAGA
1 ACCTTCTACTTAAGAGATTTTACGAATCT-ACGGTCTACTGATTTACGATCACA
* *
51900450 ACCTTTTACTTATAG-GATTTTACGAATCTATCGGTCCACTGATTTACGATCACA
1 ACCTTCTACTTA-AGAGATTTTACGAATCTA-CGGTCTACTGATTTACGATCACA
* * * ** *
51900504 ACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGCTGATTTACGATCACA
1 ACCTTCTACTTAAGAGATTTTACGAATC-TACGGTCTACTGATTTACGATCACA
*
51900558 ACCTTCTACTTACGAGATTTT
1 ACCTTCTACTTAAGAGATTTT
51900579 GTAAATCTTG
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 3 0.03
54 103 0.94
55 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (53 bp):
ACCTTCTACTTAAGAGATTTTACGAATCTACGGTCTACTGATTTACGATCACA
Found at i:51900577 original size:108 final size:107
Alignment explanation
Indices: 51900327--51900578 Score: 245
Period size: 108 Copynumber: 2.3 Consensus size: 107
51900317 AAGCATGAGT
* * * *
51900327 TGATTTAAAATCACGACCTTCTACTTTCAGTATTTTACAAATCACATGGTCCGCTGACTTACGAT
1 TGATTTACAATCACAACCTTCTACTTACAG-ATTTTACAAATCACATGGTCCACTGACTTACGAT
** *
51900392 AATGACCTTCTACTTAAGAGATTTTGCGAATCTCACGGTCTAC
65 AACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
* * * * * * * *
51900435 TAATTTACAATGAGAACCTTTTACTTATAGGATTTTACGAATC-TATCGGTCCACTGATTTACGA
1 TGATTTACAATCACAACCTTCTACTTACA-GATTTTACAAATCACAT-GGTCCACTGACTTACGA
* * * * *** *
51900499 TCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGC
64 TAACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
*
51900543 TGATTTACGATCACAACCTTCTACTTACGAGATTTT
1 TGATTTACAATCACAACCTTCTACTTAC-AGATTTT
51900579 GTAAATCTTG
Statistics
Matches: 112, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
107 2 0.02
108 108 0.96
109 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (107 bp):
TGATTTACAATCACAACCTTCTACTTACAGATTTTACAAATCACATGGTCCACTGACTTACGATA
ACAACCTTCTACTTAAGAGATTTTACGAATCTCACGGTCTAC
Found at i:51900587 original size:54 final size:54
Alignment explanation
Indices: 51900488--51900604 Score: 162
Period size: 54 Copynumber: 2.2 Consensus size: 54
51900478 TATCGGTCCA
* ** **
51900488 CTGATTTACGATCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTG
1 CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
* *
51900542 CTGATTTACGATCACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTG
1 CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
*
51900596 TTGATTTAC
1 CTGATTTAC
51900605 AATTACGACA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (54 bp):
CTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATAAATCTTGCAGTCTG
Found at i:51900975 original size:54 final size:54
Alignment explanation
Indices: 51900885--51901037 Score: 200
Period size: 54 Copynumber: 2.9 Consensus size: 54
51900875 AAAGCTTCAA
* * * * **
51900885 TTGATTTACAATCACG-CATTTTACTTACGAGATTTTATGAATCTAACAGTCTT
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTAACAGTCCG
* * *
51900938 TTGATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTTACGGTCCG
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTAACAGTCCG
* *
51900992 TTGATTTACGATCACAACCTTTTACTTATGTGATTTTACGAATCTA
1 TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTA
51901038 GGCATGTTGA
Statistics
Matches: 86, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 15 0.17
54 71 0.83
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.41
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTTTACTTACGTGATTTTACGAATCTAACAGTCCG
Found at i:51901258 original size:396 final size:397
Alignment explanation
Indices: 51900542--51901426 Score: 1104
Period size: 397 Copynumber: 2.2 Consensus size: 397
51900532 TTGTGGTCTG
* *** * * *
51900542 CTGATTTACGATCACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTGTTGATTTACAA
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGA
* * * * * * *
51900607 TTACGACATTATACTTATATGATTTTACGGATCTAGACGTGTTGAGGAAGAACTTAAAATCGACC
66 TCACAACCTTATACTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATCGACC
* * * * * * *
51900672 TCTTTGCCTTTAAAGCAAGTTAGATGCTAGAGATGATGAATATAAGGGTGTTGAGAATGAATTCA
131 ACTCTGCCTTTAAAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCA
* *
51900737 AAACTGACCATGAAAGATGGATGATAGAGGAATTAATTTTGTTAAATTGCCTTTGTGATGCTGAA
196 AAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAA
* * * * *
51900802 GCTAGTTTTCTTCACCATAGGTCTGTAGTAAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAA
261 GCTAGTTCTCTTCACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAA
* *
51900867 CTTTTTAAAAAGCTTCAATTGATTTACAATCA-CGCATTTTACTTACGAGATTTTATGAATCTAA
326 CTCTTTAAAAAGCTTCAATTGATTTACAATCATCACATTTTACTTACGAGATTTTATGAATCTAA
**
51900931 CAGTCTT
391 CAGTCCA
* * *
51900938 TTGATTTACGATCACGACCTTCTACTTACGTGATTTTACGAATCTTACGGTCCGTTGATTTACGA
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGA
* * *
51901003 TCACAACCTTTTACTTATGTGATTTTACGAATCTAGGCATGTTGAGGATGAACTCAAAA-CTGAC
66 TCACAACCTTATACTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATC-GAC
* *
51901067 CACTCTGCCTTTCAGAA-CAAGTTAAATGCTAGAAATGATGACTATAAATGTGTTGAGGAA-AAA
130 CACTCTGCCTTT-A-AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGA-GAATAAA
* * * *
51901130 CTCAAAACTGACCTTG-AA-A-GGAGGATAGCGGAATTAATTTTGTTATATTACCTTTGTGA-GG
192 CTCAAAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGC
* ** *
51901191 TAGAAGCTAGTTCTCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATTGATCTGCTCAAAAA
257 T-GAAGCTAGTTCTCTTCACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACT--AAAA
* * * * *
51901256 AAAGGAACTCTTTCAAAAGCTTCAGTTGATTTACAATCATTACCTTTTACTTACGGGATTTTATG
319 AAAGGAACTCTTTAAAAAGCTTCAATTGATTTACAATCATCACATTTTACTTACGAGATTTTATG
*
51901321 AATCTAGCAGTCCA
384 AATCTAACAGTCCA
* * * *
51901335 CTGATTTACGATCATGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCCGTTGATTTATGA
1 CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGA
*
51901400 TCACAACCTTCTACTTATG-GTATTTTA
66 TCACAACCTTATACTTATGTG-ATTTTA
51901427 TAAATCTCGT
Statistics
Matches: 418, Mismatches: 62, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
393 2 0.00
394 85 0.20
395 2 0.00
396 159 0.38
397 165 0.39
398 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (397 bp):
CTGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGA
TCACAACCTTATACTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATCGACC
ACTCTGCCTTTAAAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCA
AAACTGACCATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAA
GCTAGTTCTCTTCACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAA
CTCTTTAAAAAGCTTCAATTGATTTACAATCATCACATTTTACTTACGAGATTTTATGAATCTAA
CAGTCCA
Found at i:51901357 original size:397 final size:396
Alignment explanation
Indices: 51900489--51901426 Score: 1118
Period size: 396 Copynumber: 2.4 Consensus size: 396
51900479 ATCGGTCCAC
* * * * * ** *
51900489 TGATTTACGATCACAACCTTCTACTTAAGGGATTTTATGGATCTTGTGGTCTGCTGATTTACGAT
1 TGATTTACAATCA-AACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCTACTGATTTACGAT
* *** * * * * * *
51900554 CACAACCTTCTACTTACGAGATTTTGTAAATCTTGCAGTCTGTTGATTTACAATTACGACATTAT
65 CACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTAT
* * * * * *
51900619 ACTTATATGATTTTACGGATCTAGACGTGTTGAGGAAGAACTTAAAATCGACCTCTTTGCCTTTA
130 ACTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATCGACCACTCTGCCTTTA
* * * * *
51900684 AAGCAAGTTAGATGCTAGAGATGATGAATATAAGGGTGTTGAGAATGAATTCAAAACTGACCATG
195 AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCAAAACTGACCATG
* * *
51900749 AAAGATGGATGATAGAGGAATTAATTTTGTTAAATTGCCTTTGTGATGCTGAAGCTAGTTTTCTT
260 AAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAAGCTAGTTCTCTT
* * * * *
51900814 CACCATAGGTCTGTAGTAAGGCTTGAAATGGATCAATCTACTAAAAAAAGTAACTTTTTAAAAAG
325 CACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAACTCTTTAAAAAG
51900879 CTTCAAT
390 CTTCAAT
** * * * **
51900886 TGATTTACAATCACGCATTTTACTTACGAGATTTTATGAATCTAACAGTCTTTTGATTTACGATC
1 TGATTTACAATCAAACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCTACTGATTTACGATC
* * *
51900951 ACGACCTTCTACTTACGTGATTTTACGAATCTTACGGTCCGTTGATTTACGATCACAACCTTTTA
66 ACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTATA
* *
51901016 CTTATGTGATTTTACGAATCTAGGCATGTTGAGGATGAACTCAAAA-CTGACCACTCTGCCTTTC
131 CTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATC-GACCACTCTGCCTTT-
* *
51901080 AGAA-CAAGTTAAATGCTAGAAATGATGACTATAAATGTGTTGAGGAA-AAACTCAAAACTGACC
194 A-AAGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGA-GAATAAACTCAAAACTGACC
* * * *
51901143 TTG-AA-A-GGAGGATAGCGGAATTAATTTTGTTATATTACCTTTGTGA-GGTAGAAGCTAGTTC
257 ATGAAAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCT-GAAGCTAGTTC
* ** *
51901204 TCTTCACCATACGTCTGAAATGAGGCTTGAAATGGATTGATCTGCTCAAAAAAAAGGAACTCTTT
321 TCTTCACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACT--AAAAAAAGGAACTCTTT
* *
51901269 CAAAAGCTTCAGT
384 AAAAAGCTTCAAT
* *
51901282 TGATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCACTGATTTACGAT
1 TGATTTACAATCA-AACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCTACTGATTTACGAT
* * * * *
51901347 CATGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCCGTTGATTTATGATCACAACCTTCT
65 CACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTAT
51901412 ACTTATG-GTATTTTA
130 ACTTATGTG-ATTTTA
51901427 TAAATCTCGT
Statistics
Matches: 457, Mismatches: 75, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
393 2 0.00
394 85 0.19
395 2 0.00
396 186 0.41
397 177 0.39
398 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (396 bp):
TGATTTACAATCAAACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCTACTGATTTACGATC
ACGACCTTCTACTTACGAGATTTTACGAATCTTGCGGTCCGTTGATTTACGATCACAACCTTATA
CTTATGTGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAATCGACCACTCTGCCTTTAA
AGCAAGTTAAATGCTAGAAATGATGAATATAAAGGTGTTGAGAATAAACTCAAAACTGACCATGA
AAGATGGAGGATAGAGGAATTAATTTTGTTAAATTACCTTTGTGATGCTGAAGCTAGTTCTCTTC
ACCATACGTCTGAAATAAGGCTTGAAATGGATCAATCTACTAAAAAAAGGAACTCTTTAAAAAGC
TTCAAT
Found at i:51901364 original size:54 final size:54
Alignment explanation
Indices: 51901282--51901489 Score: 218
Period size: 54 Copynumber: 3.9 Consensus size: 54
51901272 AAGCTTCAGT
* * * * **
51901282 TGATTTACAATCATTACCTTTTACTTACGGGATTTTATGAATCTAGCAGTCCAC
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * * **
51901336 TGATTTACGATCATGACCTTCTACTTACGAGATTTTACGAATCTCGTGGTCCGT
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * * * ** *
51901390 TGATTTATGATCACAACCTTCTACTTATGGTATTTTATAAATCTCGTGGTCCAC
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
* * * *
51901444 TTATTTACGATCATAACCTTCTAATTCCAGGATTTTACGAATCTAG
1 TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAG
51901490 GCATGTTGAG
Statistics
Matches: 123, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 123 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (54 bp):
TGATTTACGATCATAACCTTCTACTTACGGGATTTTACGAATCTAGTGGTCCAC
Found at i:51901891 original size:54 final size:53
Alignment explanation
Indices: 51901752--51901891 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 53
51901742 TTACTATCAC
* * * *
51901752 GACCTATTACTT-TCGGTATTTTACGAATCTCACGGTCCACTGATTTACGATGAA
1 GACCTTTTACTTAT-GG-ATTTTACGAATCTCGCAGTCCACTGATTTACAATGAA
* * * * *
51901806 AATCTTCTACTTATGAGATTTTACGAATCTCGCAGTCTATTGATTTACAATGAA
1 GACCTTTTACTTATG-GATTTTACGAATCTCGCAGTCCACTGATTTACAATGAA
*
51901860 GACCTTTTACTTATAGGATTTTAAGAATCTCG
1 GACCTTTTACTTAT-GGATTTTACGAATCTCG
51901892 TGGTCCTTTG
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
54 67 0.96
55 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (53 bp):
GACCTTTTACTTATGGATTTTACGAATCTCGCAGTCCACTGATTTACAATGAA
Found at i:51901972 original size:108 final size:108
Alignment explanation
Indices: 51901740--51902004 Score: 239
Period size: 108 Copynumber: 2.5 Consensus size: 108
51901730 GCATCAATTA
* * * * * * *
51901740 ATTTACTATCACGACCTATTACTT-TCGGTATTTTACGAATCTCACGGTCCACTGATTTACGATG
1 ATTTACAATCACGACCTTTTACTTATAGG-ATTTTAAGAATCTCATGGTCCACTGAATTACGATC
*
51901804 AAAATCTTCTACTTATGAGATTTTACGAATCTCGCAGTCTATTG
65 AAAATCTTCTACTTATGAGATTTTACGAATCTCGCAGTCCATTG
* * * **
51901848 ATTTACAATGAAGACCTTTTACTTATAGGATTTTAAGAATCTCGTGGTCCTTTGAATTACGATCA
1 ATTTACAATCACGACCTTTTACTTATAGGATTTTAAGAATCTCATGGTCCACTGAATTACGATCA
* * * * * * * * *
51901913 CAA-CTGTCTATTTATGGGATTTTATGGATCTTGCGGTCCGTTT
66 AAATCT-TCTACTTATGAGATTTTACGAATCTCGCAGTCCATTG
* * * * *
51901956 ATTTACGATCACGACCTTCTT-CTTACAAGATTTCATGAATCTCATGGTC
1 ATTTACAATCACGACCTT-TTACTTATAGGATTTTAAGAATCTCATGGTC
51902005 TGCTGATTTT
Statistics
Matches: 124, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
107 2 0.02
108 117 0.94
109 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (108 bp):
ATTTACAATCACGACCTTTTACTTATAGGATTTTAAGAATCTCATGGTCCACTGAATTACGATCA
AAATCTTCTACTTATGAGATTTTACGAATCTCGCAGTCCATTG
Done.