Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 162 of 222
Found at i:51902788 original size:54 final size:53
Alignment explanation
Indices: 51902723--51903052 Score: 202
Period size: 54 Copynumber: 6.1 Consensus size: 53
51902713 CACAACCTAT
* *
51902723 TACTTACAGGATTTTACGAATCTCAATATCTGCTGATTTACGATGACGACCTTC
1 TACTTACAGGATTTTACGAATCTC-ATATCTGCTAATTTACGATCACGACCTTC
* * * * * *
51902777 TACTTATAGGATTTTACGAATCTTGCA-ATCTGTTGATTTACGATTATGACCATC
1 TACTTACAGGATTTTACGAATC-T-CATATCTGCTAATTTACGATCACGACCTTC
* * * * * * * * *
51902831 TATTTA-TGAAATTTTATGGATCT-AGTGGTCCGCTAATTTAAGATCACAACCTTC
1 TACTTACAG-GATTTTACGAATCTCA-T-ATCTGCTAATTTACGATCACGACCTTC
* * ** * * **
51902885 TACTTACGGGATTTTACGAATATCGCGATTTGTTAATTTGTGATCACGACCTTC
1 TACTTACAGGATTTTACGAATCTC-ATATCTGCTAATTTACGATCACGACCTTC
* * * * *
51902939 TACTTA-AGGGATTTTACAAATCTCGTGGTCTGCTGATTTACGATCACAACCTTC
1 TACTTACA-GGATTTTACGAATCTCAT-ATCTGCTAATTTACGATCACGACCTTC
* * ** * *
51902993 TACTTACGGGATTTTATGAATCTCGCA-ATCCACTAATTTACGATCATGACCTTT
1 TACTTACAGGATTTTACGAATCT--CATATCTGCTAATTTACGATCACGACCTTC
51903047 TACTTA
1 TACTTA
51903053 TGAGATTTTA
Statistics
Matches: 205, Mismatches: 57, Indels: 28
0.71 0.20 0.10
Matches are distributed among these distances:
51 1 0.00
53 2 0.01
54 197 0.96
55 3 0.01
56 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (53 bp):
TACTTACAGGATTTTACGAATCTCATATCTGCTAATTTACGATCACGACCTTC
Found at i:51902889 original size:108 final size:108
Alignment explanation
Indices: 51902771--51903068 Score: 308
Period size: 108 Copynumber: 2.8 Consensus size: 108
51902761 TACGATGACG
** * * * * *
51902771 ACCTTCTACTTATAGGATTTTACGAATCTTGCAATCTGTTGATTTACGATTATGACCATCTATTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
* ***
51902836 ATGAAATTTTATGGATCTAGTGGTCCGCTAATTTAAGATCACA
66 AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
* * * ** *
51902879 ACCTTCTACTTACGGGATTTTACGAATATCGCGATTTGTTAATTTGTGATCACGACCTTCTACTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
** * * * *
51902944 AAGGGATTTTACAAATCTCGTGGTCTGCTGATTTACGATCACA
66 AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
* *** * * *
51902987 ACCTTCTACTTACGGGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTTTACTT
1 ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
* *
51903052 ATGAGATTTTACAAATC
66 AAGAAATTTTACAAATC
51903069 ACGCGATTTA
Statistics
Matches: 154, Mismatches: 36, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
108 154 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (108 bp):
ACCTTCTACTTACGGGATTTTACGAATCTCGCAATCTGTTAATTTACGATCACGACCATCTACTT
AAGAAATTTTACAAATCTAGTGGTCCGCTAATTTAAGATCACA
Found at i:51903009 original size:162 final size:162
Alignment explanation
Indices: 51902768--51903077 Score: 345
Period size: 162 Copynumber: 1.9 Consensus size: 162
51902758 ATTTACGATG
* * * * **
51902768 ACGACCTTCTACTTATAGGATTTTACGAATCTTGCAATCTGTTGATTTACGATTATGACCATCTA
1 ACGACCTTCTACTTATAGGATTTTACAAATCTCGCAATCTGCTGATTTACGATCACAACCATCTA
* * * *** * *
51902833 TTTATGAAATTTTATGGATCTAGTGGTCCGCTAATTTAAGATCACAACCTTCTACTTACGGGATT
66 CTTACGAAATTTTATGAATCTAGCAATCCACTAATTTAAGATCACAACCTTCTACTTACGAGATT
*
51902898 TTACGAAT-ATCGCGATTTGTTAATTTGTGATC
131 TTACAAATCA-CGCGATTTGTTAATTTGTGATC
*** *
51902930 ACGACCTTCTACTTA-AGGGATTTTACAAATCTCGTGGTCTGCTGATTTACGATCACAACCTTCT
1 ACGACCTTCTACTTATA-GGATTTTACAAATCTCGCAATCTGCTGATTTACGATCACAACCATCT
** * * ** * *
51902994 ACTTACGGGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCTTTTACTTATGAGAT
65 ACTTACGAAATTTTATGAATCTAGCAATCCACTAATTTAAGATCACAACCTTCTACTTACGAGAT
51903059 TTTACAAATCACGCGATTT
130 TTTACAAATCACGCGATTT
51903078 ATTGATTCAC
Statistics
Matches: 119, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
161 1 0.01
162 117 0.98
163 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (162 bp):
ACGACCTTCTACTTATAGGATTTTACAAATCTCGCAATCTGCTGATTTACGATCACAACCATCTA
CTTACGAAATTTTATGAATCTAGCAATCCACTAATTTAAGATCACAACCTTCTACTTACGAGATT
TTACAAATCACGCGATTTGTTAATTTGTGATC
Found at i:51903122 original size:108 final size:108
Alignment explanation
Indices: 51902872--51903123 Score: 272
Period size: 108 Copynumber: 2.3 Consensus size: 108
51902862 GCTAATTTAA
* * **** **
51902872 GATCACAACCTTCTACTTACGGGATTTTACGAATATCGCGATTTGTTAATTTGTGATCACGACCT
1 GATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCT
* * * * * *
51902937 TCTACTTAAGGGATTTTACAAATCTCGTGGTCTGCTGATTTAC
66 TCTACTTAAGAGATTTTACAAATCACGCGATCTACTGATTCAC
* *
51902980 GATCACAACCTTCTACTTACGGGATTTTATGAATCTCGCAATCCACTAATTTACGATCATGACCT
1 GATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCT
* * * *
51903045 TTTACTTATGAGATTTTACAAATCACGCGATTTATTGATTCAC
66 TCTACTTAAGAGATTTTACAAATCACGCGATCTACTGATTCAC
** **
51903088 GATCATGACCTTCTA-TTGACTTGATTTTACGAATCT
1 GATCACAACCTTCTACTT-ACGGGATTTTACGAATCT
51903124 AAGCGTGTTC
Statistics
Matches: 118, Mismatches: 25, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
107 2 0.02
108 116 0.98
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (108 bp):
GATCACAACCTTCTACTTACGGGATTTTACGAATCTCGCAATCCACTAATTTACGATCACGACCT
TCTACTTAAGAGATTTTACAAATCACGCGATCTACTGATTCAC
Found at i:51903438 original size:54 final size:55
Alignment explanation
Indices: 51903356--51903654 Score: 212
Period size: 54 Copynumber: 5.5 Consensus size: 55
51903346 AAAGAGTTTT
* ** * * *
51903356 ACCTTTTACTTACGGGATTTTACGAATCTCGA-AGTTTGCTAACTTATGATGATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* *
51903410 ACCTTCTACTTACGGGATTTTACGAATCTC-ACAGTCCGCTGATTTACGATCACG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* * ** * * * *
51903464 ACCTTCTACTTATGGGATTTTACAAATCTCG-TGGTCCACTGATTTACGATCACA
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* ** * ** * * * *
51903518 ACCTTCTAGTTATAGGATTTTACGAATCTCG-CGGTCTACTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* ** * ** * * *
51903572 ACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTCCGTTAATTTACGATCATG
1 ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
* * * *
51903626 TCCTTTTACTTATGGGATTTTACAAATCT
1 ACCTTCTACTTACGGGATTTTACGAATCT
51903655 AGCTATCCAT
Statistics
Matches: 203, Mismatches: 39, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
53 1 0.00
54 202 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (55 bp):
ACCTTCTACTTACGGGATTTTACGAATCTCGACAGTCCGCTAACTTACGATCACG
Found at i:51903545 original size:108 final size:108
Alignment explanation
Indices: 51903409--51903737 Score: 401
Period size: 108 Copynumber: 3.0 Consensus size: 108
51903399 TTATGATGAT
* * * *
51903409 GACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACGACCTTCTACT
1 GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
*
51903474 TATGGGATTTTACAAATCTCGTGGTCCACTGATTTACGATCAC
66 TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
* * * * * *
51903517 AACCTTCTAGTTATAGGATTTTACGAATCTCGCGGTCTACTGATTTACAATCATGACCTTCTACT
1 GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
* ** * * * *
51903582 TAAGAAATTTTACAAATCTCATGGTCCGTTAATTTACGATCAT
66 TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
* * * * *
51903625 GTCCTTTTACTTATGGGATTTTACAAATCT-AGCTA-TCCATTGATTTACAATCATGACATTCTA
1 GACCTTCTACTTATGGGATTTTACGAATCTCA-C-AGTCCACTGATTTACAATCATGACCTTCTA
* *
51903688 CTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCAC
64 CTTATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
51903733 GACCT
1 GACCT
51903738 ACTATTGACG
Statistics
Matches: 180, Mismatches: 39, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
108 180 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (108 bp):
GACCTTCTACTTATGGGATTTTACGAATCTCACAGTCCACTGATTTACAATCATGACCTTCTACT
TATGGGATTTTACAAATCTCGTGGTCCATTGATTTACGATCAC
Found at i:51903638 original size:162 final size:162
Alignment explanation
Indices: 51903407--51903737 Score: 430
Period size: 162 Copynumber: 2.0 Consensus size: 162
51903397 ACTTATGATG
* ** * *
51903407 ATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACGACCTTCTA
1 ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
* * * * *
51903472 CTTATGGGATTTTACAAATCTCG-TGGTCCACTGATTTACGATCACAACCTTCTAGTTATAGGAT
66 CTTATGGGATTTTACAAATCTAGCT-ATCCACTGATTTACAATCACAACATTCTACTTATAGGAT
*
51903536 TTTACGAATCTCGCGGTCTACTGATTTACAATC
130 TTTACGAATCTCGCGGTCCACTGATTTACAATC
** * * * *
51903569 ATGACCTTCTACTTAAGAAATTTTACAAATCTCATGGTCCGTTAATTTACGATCATGTCCTTTTA
1 ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
* **
51903634 CTTATGGGATTTTACAAATCTAGCTATCCATTGATTTACAATCATGACATTCTACTTATAGGATT
66 CTTATGGGATTTTACAAATCTAGCTATCCACTGATTTACAATCACAACATTCTACTTATAGGATT
* * *
51903699 TTACGAATCTCGTGGTCCATTGATTTACGATC
131 TTACGAATCTCGCGGTCCACTGATTTACAATC
*
51903731 ACGACCT
1 ATGACCT
51903738 ACTATTGACG
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
162 143 0.99
163 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (162 bp):
ATGACCTTCTACTTAAGAAATTTTACAAATCTCACAGTCCGCTAATTTACGATCACGACCTTCTA
CTTATGGGATTTTACAAATCTAGCTATCCACTGATTTACAATCACAACATTCTACTTATAGGATT
TTACGAATCTCGCGGTCCACTGATTTACAATC
Found at i:51903671 original size:54 final size:55
Alignment explanation
Indices: 51903407--51903737 Score: 341
Period size: 54 Copynumber: 6.1 Consensus size: 55
51903397 ACTTATGATG
* * * * **
51903407 ATGACCTTCTACTTACGGGATTTTACGAATCTCAC-AGTCCGCTGATTTACGATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
* *
51903461 ACGACCTTCTACTTATGGGATTTTACAAATCTCG-TGGTCCACTGATTTACGATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
** * * * * * *
51903515 ACAACCTTCTAGTTATAGGATTTTACGAATCTCGC-GGTCTACTGATTTACAATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
* ** * * *
51903569 ATGACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTCCGTTAATTTACGATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
* * * * *
51903623 ATGTCCTTTTACTTATGGGATTTTACAAATCTAGCT-ATCCATTGATTTACAATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
* * *
51903677 ATGACATTCTACTTATAGGATTTTACGAATCTCG-TGGTCCATTGATTTACGATC
1 ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
*
51903731 ACGACCT
1 ATGACCT
51903738 ACTATTGACG
Statistics
Matches: 225, Mismatches: 47, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
53 1 0.00
54 223 0.99
55 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (55 bp):
ATGACCTTCTACTTATGGGATTTTACAAATCTCGCTGGTCCATTGATTTACGATC
Found at i:51904073 original size:639 final size:636
Alignment explanation
Indices: 51902760--51903966 Score: 1369
Period size: 639 Copynumber: 1.9 Consensus size: 636
51902750 ATCTGCTGAT
* * * ** ** * * * * *
51902760 TTACGATGACGACCTTCTACTTATAGGATTTTACGAATCTTGCAATCTGTTGATTTACGATTATG
1 TTACGATGATGACATTCGACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACG
* * ** *** *
51902825 ACCATCTATTTATGAAATTTTATGGATCTAGTGGTCCGCTAATTTAAGATCACAACCTTCTACTT
66 ACCTTCTACTTATGGGATTTTACAAATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTT
* * ** *** **
51902890 ACGGGATTTTACGAATATCGCGATTTGTTAATTTGTGATCACGACCTTCTACTTAAGGGATTTTA
131 ACAGGATTTTACGAATATCGCGATCTACTAATTTACAATCACGACCTTCTACTTAAGAAATTTTA
* * * ** *
51902955 CAAATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTACGGGATTTTATGAATCTCGCA
196 CAAATCTCATGGTCCGCTAATTTACGATCACAACCTTCTACTTACGGGATTTTACAAATCTAGCA
* * * **
51903020 ATCCACTAATTTACGATCATGACCTTTTACTTATGAGATTTTACAAATCACGCGATTTATTGATT
261 ATCCACTAATTTACAATCATGACATTCTACTTATGAGATTTTACAAATCACGCGATCCATTGATT
* * * * * * *
51903085 CACGATCATGACCTTCTATTGACTTGATTTTACGAATCTAAGCGTGTTCAAGAAGAACTAAAAAC
326 CACGATCACGACCTACTATTGACGTAATTATACAAATCTAAGCATGTTCAAGAAGAACTAAAAAC
* * *
51903150 TGACCTTTCTACCCTTCAAAACAAATTTAATGCTAGAGATGATTAATATAATCGTGTTAAGGAAG
391 TGACCTCTCTACCCTTCAAAACAAAGTTAATGCTAGAGATGATTAATATAAGCGTGTTAAGGAAG
*
51903215 AACTCAAAACTGACCTTGGAATAAGGAGGCTAGAGAAATCAAATTTGTTACATTGCCCTTGTGAG
456 AACTCAAAACTGACCTT-GAATAAGGAGACTAGAGAAATCAAATTTGTTACATTGCCCTTGTGAG
* * * * *
51903280 GCTGAACCAAGTTCTCTTCACCAAACGTTTGAAATGGGGTTTGAAATGGATCGGTCTATTAAAAA
520 GCTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGGATCGATCTATCAAAAA
* ** *** * *
51903345 GAAAGAGTTTTACCTTTTACTTACGGGATTTTACGAATCTCGAAGTTTGCTAAC
585 AAAAGAACTTTA-CTAAAACTTACGGGATTTTACGAATCACGAACTTT-CTAAC
* * *
51903399 TTATGATGATGACCTTCTACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACG
1 TTACGATGATGACATTCGACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACG
* * * *
51903464 ACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCCACTGATTTACGATCACAACCTTCTAGTT
66 ACCTTCTACTTATGGGATTTTACAAATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTT
* * * * *
51903529 ATAGGATTTTACGAATCTCGCGGTCTACTGATTTACAATCATGACCTTCTACTTAAGAAATTTTA
131 ACAGGATTTTACGAATATCGCGATCTACTAATTTACAATCACGACCTTCTACTTAAGAAATTTTA
* *** * * *
51903594 CAAATCTCATGGTCCGTTAATTTACGATCATGTCCTTTTACTTATGGGATTTTACAAATCTAGCT
196 CAAATCTCATGGTCCGCTAATTTACGATCACAACCTTCTACTTACGGGATTTTACAAATCTAGCA
* * * * * *
51903659 ATCCATTGATTTACAATCATGACATTCTACTTAT-AGGATTTTACGAATCTCGTGGTCCATTGAT
261 ATCCACTAATTTACAATCATGACATTCTACTTATGA-GATTTTACAAATCACGCGATCCATTGAT
* * *
51903723 TTACGATCACGACCTACTATTGACGTAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAA
325 TCACGATCACGACCTACTATTGACGTAATTATACAAATCTAAGCATGTTCAAGAAGAACTAAAAA
* ** * * * *
51903788 CTGACCTCTCTGCTTTTCAGAGC-AAGTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGA
390 CTGACCTCTCTACCCTTCAAAACAAAGTTA-ATGCTAGAGATGATTAATATAAGCGTGTTAAGGA
* * * * *
51903852 AGAACTCAAAACTGACCTT-AA-AAGGAGATTAGAGGAATTAAATTTGTTACCTTGCCTTTGTGA
454 AGAACTCAAAACTGACCTTGAATAAGGAGACTAGAGAAATCAAATTTGTTACATTGCCCTTGTGA
* * * *
51903915 GGCTGAAGCTAGTTCTCTTCACCATATGTCTGAAATGAGGCTTGAAATGGAT
519 GGCTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGGAT
51903967 TGATTTGCAC
Statistics
Matches: 472, Mismatches: 94, Indels: 7
0.82 0.16 0.01
Matches are distributed among these distances:
636 81 0.17
637 2 0.00
638 6 0.01
639 383 0.81
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (636 bp):
TTACGATGATGACATTCGACTTACGGGATTTTACGAATCTCACAGTCCGCTGATTTACGATCACG
ACCTTCTACTTATGGGATTTTACAAATCTAGTGGTCCACTAATTTAAGATCACAACCTTCTACTT
ACAGGATTTTACGAATATCGCGATCTACTAATTTACAATCACGACCTTCTACTTAAGAAATTTTA
CAAATCTCATGGTCCGCTAATTTACGATCACAACCTTCTACTTACGGGATTTTACAAATCTAGCA
ATCCACTAATTTACAATCATGACATTCTACTTATGAGATTTTACAAATCACGCGATCCATTGATT
CACGATCACGACCTACTATTGACGTAATTATACAAATCTAAGCATGTTCAAGAAGAACTAAAAAC
TGACCTCTCTACCCTTCAAAACAAAGTTAATGCTAGAGATGATTAATATAAGCGTGTTAAGGAAG
AACTCAAAACTGACCTTGAATAAGGAGACTAGAGAAATCAAATTTGTTACATTGCCCTTGTGAGG
CTGAACCAAGTTCTCTTCACCAAACGTCTGAAATGAGGCTTGAAATGGATCGATCTATCAAAAAA
AAAGAACTTTACTAAAACTTACGGGATTTTACGAATCACGAACTTTCTAAC
Found at i:51904124 original size:54 final size:54
Alignment explanation
Indices: 51904012--51904184 Score: 143
Period size: 54 Copynumber: 3.2 Consensus size: 54
51904002 GCTTTAGTTG
* * * * * * **
51904012 ATTTACAATCACTACCTTTTACTTA-CGAAATATTACGAATCTCG-AGGTCTACGG
1 ATTTACGATCACAACCTTCTACTTACCG-GATTTTACGAATCTCGTA-GTCCACTA
** * * * *
51904066 ATTTACGATCACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTA
1 ATTTACGATCACAACCTTCTACTTACCGGATTTTACGAATCTCGTAGTCCACTA
* ** *
51904120 ATTTATGATCACAACCTTCTACTTATGGGATTTTACGAATCTCGTAGTCCGCTA
1 ATTTACGATCACAACCTTCTACTTACCGGATTTTACGAATCTCGTAGTCCACTA
*
51904174 ATTTACAATCA
1 ATTTACGATCA
51904185 TGACGTTCTA
Statistics
Matches: 93, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
54 91 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (54 bp):
ATTTACGATCACAACCTTCTACTTACCGGATTTTACGAATCTCGTAGTCCACTA
Found at i:51904527 original size:456 final size:453
Alignment explanation
Indices: 51903557--51904563 Score: 1198
Period size: 453 Copynumber: 2.2 Consensus size: 453
51903547 CGCGGTCTAC
* * * * * *
51903557 TGATTTACAATCATGACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTC--CGTTAATTTAC
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGA-GGTCTACG--GATTTAC
* * * ** * * * * ** ** *
51903619 GATCATGTCCTTTTACTTATGGGATTTTACAAATCTAGCT-ATCCATTGATTTACAATCATGACA
63 GATCACGACCTTCTACTTACCGGATTTTACGAATCTCG-TGGTCCATTAATTTATGATCACAACC
* * * * *
51903683 TTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCACGACCTACTATTGACG
127 TTCTACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTACTACTGACG
** * ** *
51903748 TAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAA
192 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
* * *
51903813 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA
257 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
* * * * **
51903878 GATTAGAGGAATTAAATTTGTTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATG
322 GATTAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTTCACCATACA
* * *
51903943 TCTGAAATGAGGCTTGAAATGGATTGATTTGCACAGAAAAATAAGAAACTTTCTAAAAAGCTTTA
387 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
51904008 GT
452 GT
*
51904010 TGATTTACAATCACTACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
* * *
51904075 CACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACCTTCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCTCGTGGTCCATTAATTTATGATCACAACCTTCT
* * * * * *
51904140 ACTTATGGGATTTTACGAATCTCGTAGTCCGCTAATTTACAATCATGACGTTCTACTGACGTGAT
131 ACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTACTACTGACGTAAT
* * * * *
51904205 TCTACGAATTTAAACATGTCGATGAAGAATTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
196 TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
*
51904270 GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTTAAAACTAACCTTGAAAGATTGAA
261 GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTT-AAA-A--GAA
*
51904335 GA-TAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTT-TTTTGCACCATAC
322 GATTAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTT-CACCATAC
* * *
51904398 ATCTAAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAACAAGGAACTTTCTTAAAAGCTTT
386 ATCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTT
*
51904463 GGT
451 AGT
* *** * * ***
51904466 TGATTTACAATCACGAGCTTTTACTTACGGGTTATTATGAATCTCGAGGTTTGTTGATTTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
* * * *
51904531 GACTACTTTCTACTTACGGGATTTTACGAATCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCT
51904564 TGCAATTCGG
Statistics
Matches: 465, Mismatches: 80, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
452 1 0.00
453 258 0.55
454 4 0.01
455 6 0.01
456 192 0.41
457 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (453 bp):
TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
CACGACCTTCTACTTACCGGATTTTACGAATCTCGTGGTCCATTAATTTATGATCACAACCTTCT
ACTTATAGGATTTTACGAATCTCGTAGTCCACTAATTTACAATCACGACCTACTACTGACGTAAT
TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAAGATT
AGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTTCACCATACATCTA
AAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTAGT
Found at i:51904546 original size:54 final size:54
Alignment explanation
Indices: 51904464--51904662 Score: 195
Period size: 54 Copynumber: 3.7 Consensus size: 54
51904454 AAAAGCTTTG
* * *
51904464 GTTGATTTACAATCACGAGCTTTTACTTACGGG-TTATTATGAATCTCGAGGTTT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATT-TTATGAATCTCGAGGTTT
* * * * * * *
51904518 GTTGATTTACGATGACTACTTTCTACTTACGGGATTTTACGAATCTTGCA-ATTC
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCG-AGGTTT
* * * * * *
51904572 GGTGATTTACGATGACGACCATCTATTTACGGGATTTTATGAATCTCGTGGTCT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCGAGGTTT
* * *
51904626 GCTGATTTACGATCACAACCTTCTACTTATGGGATTT
1 GTTGATTTACGATCACGACCTTCTACTTACGGGATTT
51904663 AACAAATCTT
Statistics
Matches: 115, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
54 112 0.97
55 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (54 bp):
GTTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCTCGAGGTTT
Found at i:51904608 original size:456 final size:453
Alignment explanation
Indices: 51903557--51904652 Score: 1214
Period size: 456 Copynumber: 2.4 Consensus size: 453
51903547 CGCGGTCTAC
* * * * * *
51903557 TGATTTACAATCATGACCTTCTACTTAAGAAATTTTACAAATCTC-ATGGTC--CGTTAATTTAC
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGA-GGTCTACG--GATTTAC
* * * ** * * * * * * **
51903619 GATCATGTCCTTTTACTTATGGGATTTTACAAATCTAGCTATCCATTGATTTACAATCATGA-CA
63 GATCACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCA
** ** *
51903683 TTCTACTTATAGGATTTTACGAATCTCGTGGTCCATTGATTTACGATCACGACCTACTATTGACG
128 -TCTACTTACGGGATTTTACGAATCTCGTGGTCCGCTGATTTACGATCACGACCTACTACTGACG
** * ** *
51903748 TAATTATACAAATCTAGGCATGTTGAAGAAGAACTAAAAACTGACCTCTCTGCTTTTCAGAGCAA
192 TAATTATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAA
* * *
51903813 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA
257 GTTAGATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAA
* * * * **
51903878 GATTAGAGGAATTAAATTTGTTACCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATG
322 GATTAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTTCACCATACA
* * *
51903943 TCTGAAATGAGGCTTGAAATGGATTGATTTGCACAGAAAAATAAGAAACTTTCTAAAAAGCTTTA
387 TCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTA
51904008 GT
452 GT
*
51904010 TGATTTACAATCACTACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
* * * *** * * *
51904075 CACGGCCTTCTACTTACCGTATTTTATGAATCTCGTGGTCCATTAATTTATGATCACAACCTTCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
* * * * * * * *
51904140 ACTTATGGGATTTTACGAATCTCGTAGTCCGCTAATTTACAATCATGACGTTCTACTGACGTGAT
131 ACTTACGGGATTTTACGAATCTCGTGGTCCGCTGATTTACGATCACGACCTACTACTGACGTAAT
* * * * *
51904205 TCTACGAATTTAAACATGTCGATGAAGAATTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
196 TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
*
51904270 GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTTAAAACTAACCTTGAAAGATTGAA
261 GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTT-AAA-A--GAA
*
51904335 GA-TAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTT-TTTTGCACCATAC
322 GATTAGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTT-CACCATAC
* * *
51904398 ATCTAAAATGAGGCTTGAAATGGATCGATTTGCTCAGAAAAACAAGGAACTTTCTTAAAAGCTTT
386 ATCTAAAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTT
*
51904463 GGT
451 AGT
* *** * * ***
51904466 TGATTTACAATCACGAGCTTTTACTTACGGGTTATTATGAATCTCGAGGTTTGTTGATTTACGAT
1 TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
* * * * * * * * * *
51904531 GACTACTTTCTACTTACGGGATTTTACGAATCTTGCAATTCGGTGATTTACGATGACGACCATCT
66 CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
* * * * *
51904596 ATTTACGGGATTTTATGAATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACT
131 ACTTACGGGATTTTACGAATCTCGTGGTCCGCTGATTTACGATCACGACCTACTACT
51904653 TATGGGATTT
Statistics
Matches: 530, Mismatches: 104, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
453 256 0.48
454 5 0.01
455 6 0.01
456 259 0.49
457 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (453 bp):
TGATTTACAATCACGACCTTTTACTTACGAAATATTACGAATCTCGAGGTCTACGGATTTACGAT
CACGACCTTCTACTTACCGGATTTTACGAATCTCGCAATCCAGTAATTTACGATCACAACCATCT
ACTTACGGGATTTTACGAATCTCGTGGTCCGCTGATTTACGATCACGACCTACTACTGACGTAAT
TATACAAATCTAAACATGTCGAAGAAGAACTAAAAACTGACCTCTCTGCCCTTCAAAGCAAGTTA
GATGCTAGAGATGATTAATATAGGCGTGTTAAGGAAGAACTCAAAACTAACCTTAAAAGAAGATT
AGAGGAATCAAATTTGTTACATTGCCTTTGTAAGGCTGAACCTAGTTCTCTTCACCATACATCTA
AAATGAGGCTTGAAATGGATCGATTTGCACAGAAAAACAAGAAACTTTCTAAAAAGCTTTAGT
Found at i:51904671 original size:54 final size:54
Alignment explanation
Indices: 51904576--51904776 Score: 170
Period size: 54 Copynumber: 3.7 Consensus size: 54
51904566 CAATTCGGTG
* * * * * ** *
51904576 ATTTACGATGACGACCATCTATTTACGGGATTTTATGAATCTCGTGGTCTGCTG
1 ATTTACGATCACAACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCTGCTA
* ** ***
51904630 ATTTACGATCACAACCTTCTACTTATGGGATTTAACAAATCTTATGGTGAACTA
1 ATTTACGATCACAACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCTGCTA
** * ** *
51904684 ATTTGTGATCACGACCTTCTACTTAAT-CAATTTTACGAATCTCGTGGTCTGCTA
1 ATTTACGATCACAACCTTCTACTT-ATGGGATTTTACAAATCTCGTGGTCTGCTA
* * * *
51904738 ATTCACAATCACAATCGTCTACTTATGGGATTTTACAAA
1 ATTTACGATCACAACCTTCTACTTATGGGATTTTACAAA
51904777 CCTCTCAATC
Statistics
Matches: 109, Mismatches: 36, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
53 2 0.02
54 105 0.96
55 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.36
Consensus pattern (54 bp):
ATTTACGATCACAACCTTCTACTTATGGGATTTTACAAATCTCGTGGTCTGCTA
Found at i:51904808 original size:108 final size:107
Alignment explanation
Indices: 51904605--51904809 Score: 234
Period size: 108 Copynumber: 1.9 Consensus size: 107
51904595 TATTTACGGG
* * * * *
51904605 ATTTTATGAATCTCGTGGTCTGCTGATTTACGATCACAACCTTCTACTTATGGGATTTAACAAAT
1 ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAAT
* ** ***
51904670 CTTATGGTGAACTAATTTGTGATCACGACCTTCTACTTAATCA
66 CTAATGCCG-ACTAATTTACAATCACGACCTTCTACTTAATCA
* *
51904713 ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAATCGTCTACTTATGGGATTTTACAAAC
1 ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAA-
*
51904778 CTCTCAAT-CCG-CTAATTTACAATCATGACCTT
65 -TCT-AATGCCGACTAATTTACAATCACGACCTT
51904810 TTACCTACTG
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
108 74 0.93
110 4 0.05
111 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (107 bp):
ATTTTACGAATCTCGTGGTCTGCTAATTCACAATCACAACCGTCTACTTATGGGATTTAACAAAT
CTAATGCCGACTAATTTACAATCACGACCTTCTACTTAATCA
Found at i:51906019 original size:54 final size:54
Alignment explanation
Indices: 51905886--51906042 Score: 140
Period size: 54 Copynumber: 2.9 Consensus size: 54
51905876 AAGCTTCAGT
* * * *
51905886 TGATTTACAATCAC-AACCTTTTACTTTCGAGATTTTACGAATCTCACAGTATGC
1 TGATTTACAATGACGAA-CTTTTACTTACGAGATTTTACGAAACTCACAGTATAC
** * *
51905940 TGATTTATGATGACGACCTTCTACTTACGAGATTTTACGAAACTCTA-AGTCA-AC
1 TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTC-ACAGT-ATAC
* * * * * *
51905994 TGATTTACAATGATGAATTTTTACTTACTAGATTATATGAATCTCACAG
1 TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTCACAG
51906043 CTCACTTATT
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
53 1 0.01
54 77 0.95
55 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (54 bp):
TGATTTACAATGACGAACTTTTACTTACGAGATTTTACGAAACTCACAGTATAC
Found at i:51906148 original size:54 final size:54
Alignment explanation
Indices: 51906066--51906187 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 54
51906056 GATTACAACC
** * ** **
51906066 TTTTATGAATCTCGTGGGCCACTGATTTATTATCACGACATTATAATTAAGGGA
1 TTTTATGAATCTCGCAGGCCACTAATTTAAGATCACGACATTATAATTAAAAGA
* * * * *
51906120 TTTTATGAATCTCGCAGTCCGCTAATTTAAGATCACGACCTTCTACTTAAAAGA
1 TTTTATGAATCTCGCAGGCCACTAATTTAAGATCACGACATTATAATTAAAAGA
*
51906174 TTTTACGAATCTCG
1 TTTTATGAATCTCG
51906188 AGGTCTGTTG
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (54 bp):
TTTTATGAATCTCGCAGGCCACTAATTTAAGATCACGACATTATAATTAAAAGA
Found at i:51906202 original size:54 final size:54
Alignment explanation
Indices: 51906118--51906245 Score: 123
Period size: 54 Copynumber: 2.4 Consensus size: 54
51906108 ATAATTAAGG
* * *
51906118 GATTTTATGAATCTCGCA-GTCCGCTAATTTAAGATCACGACCTTCTACTTAAAA
1 GATTTTACGAATCTCG-AGGTCCGCTAATTTAAGATCACAACCTTCTACATAAAA
* * * * * * ***
51906172 GATTTTACGAATCTCGAGGTCTGTTGATTTACGATCGCAATCTTCTACATATGG
1 GATTTTACGAATCTCGAGGTCCGCTAATTTAAGATCACAACCTTCTACATAAAA
*
51906226 GATTTTACCAATCTCGAGGT
1 GATTTTACGAATCTCGAGGT
51906246 TTTGAGGAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.02
54 59 0.98
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
GATTTTACGAATCTCGAGGTCCGCTAATTTAAGATCACAACCTTCTACATAAAA
Found at i:51906948 original size:54 final size:54
Alignment explanation
Indices: 51906889--51907235 Score: 340
Period size: 54 Copynumber: 6.4 Consensus size: 54
51906879 GAGTTTTAGT
* * * ** * * *
51906889 TGATTTACAATCACAACCTTTTACTTATGGGATTTTTTGAATCTCGAGGTCTAT
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
**
51906943 TGATTTACGATCACGACCTTCTACTTATGGGATTTTAAC-AATCTCGTGGTCCGT
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTT-ACGAATCTCGTGGTCCAC
** * * **
51906997 TGATTTGTGATCACGACCTTCTACTTACT-AGATTTTACAAATCTCGTGGTCTGC
1 TGATTTACGATCACGACCTTCTACTTA-TGGGATTTTACGAATCTCGTGGTCCAC
* * ** *
51907051 TGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
* * * * * * **
51907105 T-AGTTTATGATCATGATCTTCTACTTAAGGAATTTTACAAATCTCGTGGTCTGC
1 TGA-TTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
* * * * *
51907159 TGATTTACAATCACTACCTTTTGCTTATCGGATTTTACGAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
51907213 TGATTTACGATCACGACCTTCTA
1 TGATTTACGATCACGACCTTCTA
51907236 GTGACGTAAT
Statistics
Matches: 235, Mismatches: 52, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.01
54 230 0.98
55 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTCTACTTATGGGATTTTACGAATCTCGTGGTCCAC
Found at i:51907195 original size:162 final size:162
Alignment explanation
Indices: 51906889--51907235 Score: 403
Period size: 162 Copynumber: 2.1 Consensus size: 162
51906879 GAGTTTTAGT
* ** ** * *
51906889 TGATTTACAATCACAACCTTTTACTTATGGGATTTTTTGAATCTCGAGGTCTATTGATTTACGAT
1 TGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCATAGATTTACGAT
* * * ***
51906954 CACGACCTTCTACTTATGGGATTTTAACAATCTCGTGGTCCGTTGATTTGTGATCACGACCTTCT
66 CACGACCTTCTACTTAAGGAATTTTAACAATCTCGTGGTCCGCTGATTTACAATCACGACCTTCT
**
51907019 ACTTACTAGATTTTACAAATCTCGTGGTCTGC
131 ACTTACTAGATTTTACAAATCTCGTGGTCCAC
* *
51907051 TGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCACTAG-TTTATGA
1 TGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCA-TAGATTTACGA
* * * *
51907115 TCATGATCTTCTACTTAAGGAATTTT-ACAAATCTCGTGGTCTGCTGATTTACAATCACTACCTT
65 TCACGACCTTCTACTTAAGGAATTTTAAC-AATCTCGTGGTCCGCTGATTTACAATCACGACCTT
* * * *
51907179 TTGCTTA-TCGGATTTTACGAATCTCGTGGTCCAC
129 CTACTTACT-AGATTTTACAAATCTCGTGGTCCAC
* *
51907213 TGATTTACGATCACGACCTTCTA
1 TGATTTACAATCACAACCTTCTA
51907236 GTGACGTAAT
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
161 3 0.02
162 150 0.97
163 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (162 bp):
TGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGAGGTCCATAGATTTACGAT
CACGACCTTCTACTTAAGGAATTTTAACAATCTCGTGGTCCGCTGATTTACAATCACGACCTTCT
ACTTACTAGATTTTACAAATCTCGTGGTCCAC
Found at i:51907256 original size:108 final size:108
Alignment explanation
Indices: 51906928--51907247 Score: 396
Period size: 108 Copynumber: 3.0 Consensus size: 108
51906918 GGATTTTTTG
* ** * * *
51906928 AATCTCGAGGTCTATTGATTTACGATCACGACCTTCTACTTATGGGATTTTAAC-AATCTCGTGG
1 AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTATCGGATTTT-ACGAATCTCGTGG
** *
51906992 TCCGTTGATTTGTGATCACGACCTTCTACTTAC-TAGATTTTACA
65 TCCACTGATTTATGATCACGACCTTCTACTTACGTA-ATTTTACA
*
51907036 AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTA-CAGGATTTTACGAATCTCGCGG
1 AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTATC-GGATTTTACGAATCTCGTGG
* * * *
51907100 TCCACT-AGTTTATGATCATGATCTTCTACTTAAGGAATTTTACA
65 TCCACTGA-TTTATGATCACGACCTTCTACTTACGTAATTTTACA
* * *
51907144 AATCTCGTGGTCTGCTGATTTACAATCACTACCTTTTGCTTATCGGATTTTACGAATCTCGTGGT
1 AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTATCGGATTTTACGAATCTCGTGGT
* * *
51907209 CCACTGATTTACGATCACGACCTTCTAGTGACGTAATTT
66 CCACTGATTTATGATCACGACCTTCTACTTACGTAATTT
51907248 AATGAATCTA
Statistics
Matches: 181, Mismatches: 25, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
107 3 0.02
108 175 0.97
109 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (108 bp):
AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTATCGGATTTTACGAATCTCGTGGT
CCACTGATTTATGATCACGACCTTCTACTTACGTAATTTTACA
Found at i:51907630 original size:54 final size:53
Alignment explanation
Indices: 51907552--51907700 Score: 140
Period size: 51 Copynumber: 2.8 Consensus size: 53
51907542 GACTCTCGAG
* * * *
51907552 GTCTGCTAATTTACGATGATGACCTTCGACTTATGGGATTTTATGAAACTCATA
1 GTCTGCTAATTTATGATCACGACCTTC-ACTTATGGGATTTTACGAAACTCATA
* * * * * *
51907606 GTCTGCTGATTTATGATCACGACC-T-ACTTTTGAGATTTTACGAATCTCGTG
1 GTCTGCTAATTTATGATCACGACCTTCACTTATGGGATTTTACGAAACTCATA
* * **
51907657 GTCCGCTAATTTATGATCACGACTTTCTACTTACAGGATTTTAC
1 GTCTGCTAATTTATGATCACGACCTTC-ACTTATGGGATTTTAC
51907701 TAATCTTGCG
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
51 41 0.55
52 1 0.01
53 1 0.01
54 32 0.43
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (53 bp):
GTCTGCTAATTTATGATCACGACCTTCACTTATGGGATTTTACGAAACTCATA
Found at i:51907777 original size:108 final size:108
Alignment explanation
Indices: 51907640--51907868 Score: 300
Period size: 108 Copynumber: 2.1 Consensus size: 108
51907630 TACTTTTGAG
* * *
51907640 ATTTTACGAATCTCGTGGTCCGCTAATTTATGATCACGACTTTCTACTTAC-AGGATTTTACT-A
1 ATTTTACGAATCTCGTGGTCCACTAATTTACGATCACGACCTTCTACTTACGA-GATTTTA-TGA
*
51907703 ATCTTGCGGTGCACTGATTTACGATCACAACCTTCTACTTAAGAA
64 ATCTTGCGGTGCACTGATTTACGATCACAAACTTCTACTTAAGAA
* * *
51907748 ATTTTATGAATCTCGTGGTCCACTGATTTACGATCATGACCTTCTACTTACGAGATTTTATGAAT
1 ATTTTACGAATCTCGTGGTCCACTAATTTACGATCACGACCTTCTACTTACGAGATTTTATGAAT
* ** * * *
51907813 CTTGCGGTTCGTTGATTTACGATCACAAACTTCTACTGACGTA
66 CTTGCGGTGCACTGATTTACGATCACAAACTTCTACTTAAGAA
*
51907856 ATTTTACAAATCT
1 ATTTTACGAATCT
51907869 TGGCGTGTTA
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
107 1 0.01
108 102 0.98
109 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (108 bp):
ATTTTACGAATCTCGTGGTCCACTAATTTACGATCACGACCTTCTACTTACGAGATTTTATGAAT
CTTGCGGTGCACTGATTTACGATCACAAACTTCTACTTAAGAA
Found at i:51907831 original size:612 final size:610
Alignment explanation
Indices: 51906521--51908025 Score: 1677
Period size: 612 Copynumber: 2.5 Consensus size: 610
51906511 ATCTTTCGGG
* * *
51906521 ATTTTACGAATCTCGTGGTTCGCTGATTTACGATCACGACCTTCTACTTACGGGATTTTACAA-C
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTAC-GGATTTTAGAATC
* * * * * ** * *
51906585 TCAC-ATTCCACTAATTTATGATTACGACCTTCTACTTTCGTGATTTTATGAATCTAGTCGTGTT
65 TCGCGGTT-CACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTT
* * * * * * * * **
51906649 CAGGAATAACTCAAAACTGACCACTCTGCCCCTT-AGAGCAAGTTAGATGTTAGAGATTATGGAT
129 AAAGAAGAACTAAAAACTAACCTCTCTG-CCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
* ** *
51906713 ATAGCCACGTTGAGGAAGAACTCAAAACTGACCTTAAAAGAAGAAGAATAGATGAATC-AATCTT
193 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAG--G-AG-ATAGAGGAATCAAAT-TT
* * * ** *
51906777 CTTACAATT-CCTTTGTGTGACTAAAACTAGTTCTCTTCACCATATTTCTGAAACGAAGCTTGAA
253 GTTAC-ATTGCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAA
* * * * * * *
51906841 ATAGATTGATATTCTCAGAAAATAAGGAATTTTTTTAAGAGTTTTAGTTGATTTACAATCACAAC
317 ATAGATTGATATTCACAGAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAAC
* *** * * *
51906906 CTTTTACTTATGGGATTTTTTGAATCTCGAGGTCTATTGATTTACGATCACGACCTTCTACTTAT
382 CTTTTACTTACGGGATTTCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTAT
* * * * *
51906971 GGGATTTTAACAATCTCGTGGTCCGTTGATTTGTGATCACGACCTTCTACTTACTAGATTTTACA
447 GGGATTTTAACAAACTCATAGTCCGCTGATTTATGATCACGACC-TCTACTTACTAGATTTTACA
* *
51907036 AATCTCGTGGTCTGCTGATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGT
511 AATCTCGTGGTCCGCTAATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGT
* ** * *
51907101 CCACTAGTTTATGATCATGATCTTCTACTTAAGGA
576 CCACTAGTTTACGATCACAACCTTCTACTTAAGAA
* * * * *
51907136 ATTTTACAAATCTCGTGGTCTGCTGATTTACAATCACT-ACCTTTTGCTTATCGGATTTTACGAA
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCA-TGACCTTCTACTTA-CGGATTTTA-GAA
* * * * *
51907200 TCTCGTGGTCCACTGATTTACGATCACGACCTTCTAGTGACGTAATTTAATGAATCTAGGCATGT
63 TCTCGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGT
* **
51907265 TGAAGAAGAACTAAAAACTAACCTCTCTGCTTTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
128 TAAAGAAGAACTAAAAACTAACCTCTCTGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
51907330 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATTAGAGGAATCAAATTTGTTA
193 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGA-TAGAGGAATCAAATTTGTTA
* * * * * *
51907395 CCTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTAAAATGAGGCTTGAAATGGA
257 CATTGCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAAATAGA
*
51907460 TTGAT-TTGCACAGAAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACGACCTT
322 TTGATATT-CACAG-AAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAACCTT
* * * *
51907524 TTACTTACGGG-TTATCACGACTCTCGAGGTCTGCTAATTTACGATGATGACCTTCGACTTATGG
385 TTACTTACGGGATT-TCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTATGG
** * * *
51907588 GATTTTATGAAACTCATAGTCTGCTGATTTATGATCACGA-C-CTACTT-TTGAGATTTTACGAA
449 GATTTTAACAAACTCATAGTCCGCTGATTTATGATCACGACCTCTACTTACT-AGATTTTACAAA
** * * * * *
51907650 TCTCGTGGTCCGCTAATTTATGATCACGACTTTCTACTTACAGGATTTTACTAATCTTGCGGTGC
513 TCTCGTGGTCCGCTAATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCC
51907715 ACT-GATTTACGATCACAACCTTCTACTTAAGAA
578 ACTAG-TTTACGATCACAACCTTCTACTTAAGAA
* *
51907748 ATTTTATGAATCTCGTGGTCCACTGATTTACGATCATGACCTTCTACTTACGAGATTTTATGAAT
1 ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTACG-GATTTTA-GAAT
* ** * * ** *
51907813 CTTGCGGTTCGTTGATTTACGATCACAAACTTCTACTGACGTAATTTTACAAATCTTGGCGTGTT
64 CTCGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTT
* * * * *
51907878 AAAGAAGAACTAAAAATTAGCCTCTCAT-CCCTTCAGAGCAAGTTTGATTCGAGAGATGATTAAT
129 AAAGAAGAACTAAAAACTAACCTCTC-TGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAAT
* * * * *
51907942 ATTGGCGTGTTGAGGAAGAACTCAAAACTAATCTTAAAAGAAGGATAGAGGAATTAAATTTGTTA
193 ATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGA-GATAGAGGAATCAAATTTGTTA
*
51908007 CATTGCCATTGTGAGGCTA
257 CATTGCCTTTGTGAGGCTA
51908026 GAATGACGGA
Statistics
Matches: 742, Mismatches: 130, Indels: 39
0.81 0.14 0.04
Matches are distributed among these distances:
611 5 0.01
612 330 0.44
613 8 0.01
614 79 0.11
615 179 0.24
616 6 0.01
617 134 0.18
618 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (610 bp):
ATTTTACGAATCTCGTGGTCCGCTGATTTACGATCATGACCTTCTACTTACGGATTTTAGAATCT
CGCGGTTCACTGATTTACGATCACGACCTTCTACTGACGTAATTTTATGAATCTAGGCGTGTTAA
AGAAGAACTAAAAACTAACCTCTCTGCCCTTCAGAGCAAGTTAGATGCTAGAGATGATTAATATA
GGCGTGTTGAGGAAGAACTCAAAACTGACCTTAAAAGGAGATAGAGGAATCAAATTTGTTACATT
GCCTTTGTGAGGCTAAAACTAGTTCTCTTCACCATACGTCTAAAACGAAGCTTGAAATAGATTGA
TATTCACAGAAAACAAGGAACTTTCTGAAAAGCTTTAGTTGATTTACAATCACAACCTTTTACTT
ACGGGATTTCACGAATCTCGAGGTCTACTAATTTACGATCACGACCTTCGACTTATGGGATTTTA
ACAAACTCATAGTCCGCTGATTTATGATCACGACCTCTACTTACTAGATTTTACAAATCTCGTGG
TCCGCTAATTTACAATCACAACCTTCTACTTACAGGATTTTACGAATCTCGCGGTCCACTAGTTT
ACGATCACAACCTTCTACTTAAGAA
Found at i:51907860 original size:54 final size:53
Alignment explanation
Indices: 51907640--51907870 Score: 212
Period size: 54 Copynumber: 4.3 Consensus size: 53
51907630 TACTTTTGAG
* * * * * * * * *
51907640 ATTTTACGAATCTCGTGGTCCGCTAATTTATGATCACGACTTTCTACTTACAGG
1 ATTTTATGAATCTTGCGGTCCACTGATTTACGATCACAACCTTCTACTTAC-GA
* *
51907694 ATTTTACT-AATCTTGCGGTGCACTGATTTACGATCACAACCTTCTACTTAAGAA
1 ATTTTA-TGAATCTTGCGGTCCACTGATTTACGATCACAACCTTCTACTTACG-A
* * **
51907748 ATTTTATGAATCTCGTGGTCCACTGATTTACGATCATGACCTTCTACTTACGA
1 ATTTTATGAATCTTGCGGTCCACTGATTTACGATCACAACCTTCTACTTACGA
* ** * *
51907801 GATTTTATGAATCTTGCGGTTCGTTGATTTACGATCACAAACTTCTACTGACGTA
1 -ATTTTATGAATCTTGCGGTCCACTGATTTACGATCACAACCTTCTACTTACG-A
**
51907856 ATTTTACAAATCTTG
1 ATTTTATGAATCTTG
51907871 GCGTGTTAAA
Statistics
Matches: 144, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
53 3 0.02
54 140 0.97
55 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (53 bp):
ATTTTATGAATCTTGCGGTCCACTGATTTACGATCACAACCTTCTACTTACGA
Found at i:51908835 original size:68 final size:68
Alignment explanation
Indices: 51908755--51909002 Score: 299
Period size: 68 Copynumber: 3.6 Consensus size: 68
51908745 GGACAACATT
51908755 TATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAG
1 TATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAG
51908820 CAC
66 CAC
* * *
51908823 TATACATCAAATTGGACAGCTTTAATATGCTCAAATTGGACATCATTATACATCAAATTGGACAG
1 TATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAG
51908888 CATC
66 CA-C
* * * *
51908892 AATATGC-TCAAAATGGACAGCATT-ATA--CATCAAATTGGACAGCATCAATATAC-TCAAAAT
1 --TATACATCAAATTGGACAGCATTAATATGC-TCAAAATGGACAGCAT---TATACATCAAATT
*
51908952 GGACAGCAT
60 GGACAGCAC
* * *
51908961 TATACATTAAATTGGACAGTATCAATATGCTCAAAATGGACA
1 TATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACA
51909003 ACACTATAAC
Statistics
Matches: 154, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
67 5 0.03
68 92 0.60
69 7 0.05
70 40 0.26
71 10 0.06
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (68 bp):
TATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCATTATACATCAAATTGGACAG
CAC
Found at i:51908896 original size:114 final size:116
Alignment explanation
Indices: 51908743--51908958 Score: 366
Period size: 114 Copynumber: 1.9 Consensus size: 116
51908733 CTACCCTATT
*
51908743 TTGGACAACATTTATACATCAAATTGGACAGCATTAATATGCTCAAAATGGACAGCATTATACAT
1 TTGGACAACATTTATACATCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACAT
*
51908808 CAAATTGGACAGCA-C-TATACATCAAATTGGACAGCTTTAATATGCTCAAA
66 CAAATTGGACAGCATCATATAC-TCAAAATGGACAGCTTTAATATGCTCAAA
*
51908858 TTGGACATCA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACAT
1 TTGGACAACATTTATACATCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACAT
51908922 CAAATTGGACAGCATCAATATACTCAAAATGGACAGC
66 CAAATTGGACAGCATC-ATATACTCAAAATGGACAGC
51908959 ATTATACATT
Statistics
Matches: 95, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
114 67 0.71
115 10 0.11
116 13 0.14
117 5 0.05
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (116 bp):
TTGGACAACATTTATACATCAAATTGGACAGCATCAATATGCTCAAAATGGACAGCATTATACAT
CAAATTGGACAGCATCATATACTCAAAATGGACAGCTTTAATATGCTCAAA
Found at i:51908985 original size:46 final size:46
Alignment explanation
Indices: 51908761--51909002 Score: 312
Period size: 46 Copynumber: 5.3 Consensus size: 46
51908751 CATTTATACA
* * *
51908761 TCAAATTGGACAGCATTAATATGC-TCAAAATGGACAGCAT---TATAC
1 TCAAAATGGACAGCATT-ATA--CATCAAATTGGACAGCATCAATATGC
* * * *
51908806 ATCAAATTGGACAGCACTATACATCAAATTGGACAGCTTTAATATGC
1 -TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGC
* *
51908853 TCAAATTGGACATCATTATACATCAAATTGGACAGCATCAATATGC
1 TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGC
*
51908899 TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATAC
1 TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGC
* *
51908945 TCAAAATGGACAGCATTATACATTAAATTGGACAGTATCAATATGC
1 TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGC
51908991 TCAAAATGGACA
1 TCAAAATGGACA
51909003 ACACTATAAC
Statistics
Matches: 178, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
43 1 0.01
44 14 0.08
45 3 0.02
46 156 0.88
47 4 0.02
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.26
Consensus pattern (46 bp):
TCAAAATGGACAGCATTATACATCAAATTGGACAGCATCAATATGC
Found at i:51909745 original size:41 final size:40
Alignment explanation
Indices: 51909682--51909834 Score: 128
Period size: 41 Copynumber: 3.8 Consensus size: 40
51909672 AATGTTTCGT
* * * *
51909682 ACACTAATTGCCATTGCATAGCCGAAGCTATTATAATCTCAC
1 ACACTAACTGCC-TTACATAGCCGAAGCTATT-CAACCTCAC
* *
51909724 ACACTAACTGCCTTACATAGCCGAAGCTATCTCAGCCTCGC
1 ACACTAACTGCCTTACATAGCCGAAGCTAT-TCAACCTCAC
* * * *
51909765 ACACTAAGTGCCATATATAGCCGAAGCTATTCCAA-ATCAC
1 ACACTAACTGCCTTACATAGCCGAAGCTATT-CAACCTCAC
* * * * *
51909805 ACAATAAGTGCCATAAATAGCTGAAGCTAT
1 ACACTAACTGCCTTACATAGCCGAAGCTAT
51909835 CTCGAATTTC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 31 0.33
41 51 0.54
42 12 0.13
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (40 bp):
ACACTAACTGCCTTACATAGCCGAAGCTATTCAACCTCAC
Found at i:51909825 original size:40 final size:40
Alignment explanation
Indices: 51909699--51909834 Score: 139
Period size: 41 Copynumber: 3.4 Consensus size: 40
51909689 TTGCCATTGC
** * * *
51909699 ATAGCCGAAGCTATTATAATCTCACACACTAACTGCCTTAC
1 ATAGCCGAAGCTATTCCAA-CTCACACACTAAGTGCCATAA
* * *
51909740 ATAGCCGAAGCTA-TCTCAGCCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATTC-CA-ACTCACACACTAAGTGCCATAA
* *
51909781 ATAGCCGAAGCTATTCCAAATCACACAATAAGTGCCATAA
1 ATAGCCGAAGCTATTCCAACTCACACACTAAGTGCCATAA
*
51909821 ATAGCTGAAGCTAT
1 ATAGCCGAAGCTAT
51909835 CTCGAATTTC
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
40 31 0.39
41 46 0.58
42 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (40 bp):
ATAGCCGAAGCTATTCCAACTCACACACTAAGTGCCATAA
Found at i:51909831 original size:81 final size:82
Alignment explanation
Indices: 51909682--51909837 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 82
51909672 AATGTTTCGT
* * * * * *
51909682 ACACTAATTGCCATTGCATAGCCGAAGCTATTATAATCTCACACACTAACTGCCTTACATAGCCG
1 ACACTAAGTGCCATT-CATAGCCGAAGCTATTACAATATCACACAATAACTGCCATAAATAGCCG
51909747 AAGCTATCTCAGCCTCGC
65 AAGCTATCTCAGCCTCGC
* * *
51909765 ACACTAAGTGCCATAT-ATAGCCGAAGCTATTCCAA-ATCACACAATAAGTGCCATAAATAGCTG
1 ACACTAAGTGCCAT-TCATAGCCGAAGCTATTACAATATCACACAATAACTGCCATAAATAGCCG
51909828 AAGCTATCTC
65 AAGCTATCTC
51909838 GAATTTCATA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 32 0.51
82 17 0.27
83 13 0.21
84 1 0.02
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.24
Consensus pattern (82 bp):
ACACTAAGTGCCATTCATAGCCGAAGCTATTACAATATCACACAATAACTGCCATAAATAGCCGA
AGCTATCTCAGCCTCGC
Found at i:51915154 original size:25 final size:26
Alignment explanation
Indices: 51915125--51915180 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
51915115 TTAATTAGTA
*
51915125 TAAAATATT-AATAATTTAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
51915149 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
51915175 TAAAAT
1 TAAAAT
51915181 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:51915773 original size:22 final size:19
Alignment explanation
Indices: 51915734--51915775 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
51915724 TGCAAAGTTG
51915734 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
51915753 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
51915775 A
1 A
51915776 ATGATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:51922928 original size:8 final size:8
Alignment explanation
Indices: 51922915--51922942 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51922905 TCAAAATGCA
51922915 AAATTCAC
1 AAATTCAC
51922923 AAATTCAC
1 AAATTCAC
51922931 AAATTCAC
1 AAATTCAC
51922939 AAAT
1 AAAT
51922943 AATGTGACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATTCAC
Found at i:51924140 original size:12 final size:12
Alignment explanation
Indices: 51924123--51924148 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51924113 CATTCCGAAG
51924123 TATATATATACA
1 TATATATATACA
51924135 TATATATATACA
1 TATATATATACA
51924147 TA
1 TA
51924149 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:51924660 original size:27 final size:27
Alignment explanation
Indices: 51924629--51924806 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
51924619 TAAATTGTAC
*
51924629 AGCACTAGGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51924656 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51924682 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
51924710 GGCACTAAGTGTGCGAGTTTGACCATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51924738 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51924765 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51924792 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51924807 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51924746 original size:82 final size:81
Alignment explanation
Indices: 51924630--51924785 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
51924620 AAATTGTACA
* * * *
51924630 GCACTAGGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51924694 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51924711 GCACTAAGTGTGCGAGTTTGACCATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51924776 TGCGAGTTGA
65 TGCGAATTGA
51924786 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 14 0.22
82 50 0.77
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51924797 original size:82 final size:81
Alignment explanation
Indices: 51924626--51924806 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
51924616 GATTAAATTG
* * * *
51924626 TACAGCACTAGGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51924691 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51924707 TGCGGCACTAAGTGTGCGAGTTTGACCATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51924771 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51924789 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51924807 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACCATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51927345 original size:182 final size:182
Alignment explanation
Indices: 51927038--51927405 Score: 612
Period size: 182 Copynumber: 2.0 Consensus size: 182
51927028 TCAGCTACCT
*
51927038 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTATAATTTCAATCTGTTTAAAT
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCTGTTTAAAT
* *
51927103 AATTAATTCATTAGTTGCCTTACAATTGTAATGCAAGAATAACTTATTCATGGCTTTACTTAATC
66 AATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGCTTTACTTAATC
* * *
51927168 AAACATCTTACCGAGGCCTATAACAACACAAACACAATTTTAATAACTCAAG
131 AAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
*
51927220 TAGATGATTAAACATGCACTGATTGAGTATCGTGTCAATTAATTACAATTTCAAT-TCGTTTAAA
1 TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCT-GTTTAAA
* *
51927284 TAATTAATTTATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGTTTTACTTAAT
65 TAATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGCTTTACTTAAT
* * *
51927349 CAAACATTTTTCCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCCAG
130 CAAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
51927402 TAGA
1 TAGA
51927406 CGAAATGCAA
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
181 1 0.01
182 172 0.99
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (182 bp):
TAGATGATTAAACATGCACTGATTGAGTATCATGTCAATTAATTACAATTTCAATCTGTTTAAAT
AATTAATTCATTAGTTACCTTACAATTGTAATGCAAGAATAACTTAGTCATGGCTTTACTTAATC
AAACATCTTACCGAGGCCTATAACAACACAAAAAAAAATTTAATAACTCAAG
Found at i:51929061 original size:53 final size:53
Alignment explanation
Indices: 51928925--51929077 Score: 155
Period size: 53 Copynumber: 2.9 Consensus size: 53
51928915 AAAAGCTTTA
* * *
51928925 GTTGATTTACAATCACGACCTTTTACTTATGAGACTTTACGAATCGTGTAATCC
1 GTTGATTTACAATCACGAACTTTTACTTACGAGATTTTACGAATC-TGTAATCC
** * * ** *
51928979 ACTGATTTACAATCATG-ACTTTTTACTTACGAGATTTTATGAATCTGTGGTCT
1 GTTGATTTACAATCACGAAC-TTTTACTTACGAGATTTTACGAATCTGTAATCC
* * * *
51929032 GTTGATTTACGATCACGAACTTTAACTTACGGGATATTACGAATCT
1 GTTGATTTACAATCACGAACTTTTACTTACGAGATTTTACGAATCT
51929078 CTTGGTCTAC
Statistics
Matches: 79, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
53 41 0.52
54 38 0.48
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (53 bp):
GTTGATTTACAATCACGAACTTTTACTTACGAGATTTTACGAATCTGTAATCC
Found at i:51929521 original size:39 final size:39
Alignment explanation
Indices: 51929476--51929555 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
51929466 TTTTACGAAA
51929476 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
1 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
51929515 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
1 ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
51929554 AT
1 AT
51929556 TATATGGATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.36
Consensus pattern (39 bp):
ATCGCGGTCAGTTGATTTATGATGACGACCTTTTACTGG
Found at i:51929688 original size:54 final size:54
Alignment explanation
Indices: 51929630--51929814 Score: 156
Period size: 54 Copynumber: 3.4 Consensus size: 54
51929620 CACGATATTC
* * * **
51929630 TACTTATGGGATTTAACAAATCTCATGGGCCGTTAATTTATTATCATGACCTTA
1 TACTTAAGGGATTTTACGAATCTCATGGGCCGTTAATTTACGATCATGACCTTA
* ** * * * *
51929684 TACTTAAGGGATTTTATGAATCTTGTAGTCCGTTGATTTACGATCATGACCTTT
1 TACTTAAGGGATTTTACGAATCTCATGGGCCGTTAATTTACGATCATGACCTTA
* * * * ** **
51929738 TACTTACA-GGATTTTACGAATCTCATGGTCTGTTGATTTATGATCGCGACCTCC
1 TACTTA-AGGGATTTTACGAATCTCATGGGCCGTTAATTTACGATCATGACCTTA
* *
51929792 TACTTACGAGATTTTACGAATCT
1 TACTTAAGGGATTTTACGAATCT
51929815 AGGTGTGCTG
Statistics
Matches: 105, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
54 104 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (54 bp):
TACTTAAGGGATTTTACGAATCTCATGGGCCGTTAATTTACGATCATGACCTTA
Found at i:51930455 original size:346 final size:345
Alignment explanation
Indices: 51929715--51930477 Score: 889
Period size: 346 Copynumber: 2.2 Consensus size: 345
51929705 CTTGTAGTCC
* * * ** ** *
51929715 GTTGATTTACGATCATGACCTTTTACTTACAGGATTTTACGAATCTCATGGTCTGTTGATTTATG
1 GTTGATTTACAATCACGACCTTTTA-TTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACG
* * * *
51929780 ATCGCGACCTCCTACTTACGAGATTTTACGAATCTAGGTGTGCTGAGGAAGAACTCAAAACTAAC
65 AT--CAACCTCCTACATACGAGATTTTACGAATCTAGGTGTGCTCAAGAAGAACTCAAAACTAAC
* **
51929845 CTATCTGCCCTTCAAAGCAAGTTATATGCTAGAGATAATGAATATATGTGTGTTGAGGAAGAACT
128 CTATCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACT
* *
51929910 CAAAACTAACCTTGAAAGAAAGATGATAATGGAATTAATTTTGTTACATTACCTTTGTGAAGCAG
193 CAAAACTAACCTTGAAAGAAAGATGATAATGGAATCAACTTTGTTACATTACCTTTGTGAAGCAG
* ** * *
51929975 AAGCTAGTTCTCTTCACCATACATCTGATATGTGGCTTTTATTTGATCGATCTGTTCAGAAAAAC
258 AAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGTTCAGAAAAAC
51930040 AAGGAAAATATTGAAAAGCTTCA
323 AAGGAAAATATTGAAAAGCTTCA
* * ** *
51930063 GTTGATTTACAATCACGACC-TTTATCTTTCGAGATTTTTTGAATCTCGCGATCCATTGATTTAC
1 GTTGATTTACAATCACGACCTTTTAT-TATAG-GATTTTACGAATCTCGCGGTCCATTGATTTAC
* * * * *
51930127 AATCAATCTTCTACATACGTGATTTTACGAATCTA-GTCGTGTTCAAGAAGAACTCAAAACTAAC
64 GATCAACCTCCTACATACGAGATTTTACGAATCTAGGT-GTGCTCAAGAAGAACTCAAAACTAAC
* * * * *
51930191 C-ACTCTGCCTTTCAGAGCAAGTTAGATGTTAGAGATTATGCATATA-GCCATGTTGAGGAAGAA
128 CTA-TCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATG-CATGTTGAGGAAGAA
* * *
51930254 CTCAAAACTGACCTTGAAAGAAGGA-GAATAGAT-GAATCAACTTTGTTACAATT-CCTTTGTGT
191 CTCAAAACTAACCTTGAAAGAAAGATG-ATA-ATGGAATCAACTTTGTTAC-ATTACCTTTGTGA
* * * * *
51930316 GGCTGAAGCTAGTTCTTTTCACTATACTTCTGAAATGTGGCTTGAAATGGATCGATCT-TCTCAG
253 AGCAGAAGCTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGT-TCAG
* *
51930380 AAAAACAA-GAAACT-TTCTAAAGAGCTTCA
317 AAAAACAAGGAAAATATT-GAAA-AGCTTCA
*
51930409 GTTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCCACTGATTTACG
1 GTTGATTTACAATCACGACCTTTTA-TTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACG
51930474 ATCA
65 ATCA
51930478 CAACTTTCTA
Statistics
Matches: 348, Mismatches: 54, Indels: 28
0.81 0.13 0.07
Matches are distributed among these distances:
344 2 0.01
345 14 0.04
346 269 0.77
347 18 0.05
348 45 0.13
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (345 bp):
GTTGATTTACAATCACGACCTTTTATTATAGGATTTTACGAATCTCGCGGTCCATTGATTTACGA
TCAACCTCCTACATACGAGATTTTACGAATCTAGGTGTGCTCAAGAAGAACTCAAAACTAACCTA
TCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATAATGAATATATGCATGTTGAGGAAGAACTCAA
AACTAACCTTGAAAGAAAGATGATAATGGAATCAACTTTGTTACATTACCTTTGTGAAGCAGAAG
CTAGTTCTCTTCACCATACATCTGAAATGTGGCTTGAAATGGATCGATCTGTTCAGAAAAACAAG
GAAAATATTGAAAAGCTTCA
Found at i:51930599 original size:108 final size:108
Alignment explanation
Indices: 51930410--51930670 Score: 310
Period size: 108 Copynumber: 2.4 Consensus size: 108
51930400 AGAGCTTCAG
* * * * * * *
51930410 TTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCCACTGATTTACGA
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
* * * *
51930475 TCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGGTCCT-
66 TCACAACTTTCTACTTACGGGATTTTATGAATCTCACGCT-CTA
* * * *
51930518 TTGATTTACGATCACGACCTTTTACCTATGGGATTTTAAAAATCTCATGGGCCACTTATTTACAA
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
* * *
51930583 TCACAA-TCTTCTACTTATGGGATTTTATGAATCTCATGCTTTA
66 TCACAACT-TTCTACTTACGGGATTTTATGAATCTCACGCTCTA
* *
51930626 TTGATTTACGATCACGACCTTCTACTTATGTGATTTTACAAATCT
1 TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCT
51930671 TGCGACCTGC
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
107 2 0.02
108 127 0.98
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (108 bp):
TTGATTTACGATCACGACCTTTTACTTATGGGATTTTACAAATCTCACGGGCCACTGATTTACAA
TCACAACTTTCTACTTACGGGATTTTATGAATCTCACGCTCTA
Found at i:51930900 original size:54 final size:54
Alignment explanation
Indices: 51930409--51930912 Score: 269
Period size: 54 Copynumber: 9.4 Consensus size: 54
51930399 AAGAGCTTCA
* * * *
51930409 GTTGATTTACAATCACGACCTTTTAGTTATAGGATTTTACGAATCTCGCGGTCC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
** * * * * * **
51930463 ACTGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGGTCC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* * * * * ** *
51930517 TTTGATTTACGATCACGACCTTTTACCTATGGGATTTTAAAAATCTCATGGGCC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* * * ** ** * **
51930571 ACTT-ATTTACAATCACAATCTTCTACTTATGGGATTTTATGAATCTCATGCTTT
1 -GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* * * * *
51930625 ATTGATTTACGATCACGACCTTCTACTTATGTGATTTTACAAATCTTGC-GACC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* ** * * * ** * ** **
51930678 TGCT-ATTTACGTTGACGACCTTTTACTTATAGGATTTTATGAGTCTTACGGTAT
1 -GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* ** * * * * * * * **
51930732 ATTGATTTAGGAGCATGGCCTTCTACTTACGTGG-TTTTACAAATATTGTGGTAT
1 GTTGATTTACAATCACGACCTTCTACTTATG-GGATTTTACAAATCTCGCGGTCC
* * * * * * ** ** *
51930786 GTTGATTTACAATCATGACATTTTACTTAAGAGAATTTATGAATCTCATGGTTC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
* * * *
51930840 GCTGATTGACAATCACGACCTTCTACTTACGGGATTTTACAAATCTCGCGGCCC
1 GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
51930894 GTTGATTTACAATCACGAC
1 GTTGATTTACAATCACGAC
51930913 TTGCTGCATA
Statistics
Matches: 328, Mismatches: 115, Indels: 14
0.72 0.25 0.03
Matches are distributed among these distances:
53 40 0.12
54 284 0.87
55 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (54 bp):
GTTGATTTACAATCACGACCTTCTACTTATGGGATTTTACAAATCTCGCGGTCC
Found at i:51932725 original size:125 final size:124
Alignment explanation
Indices: 51932558--51932835 Score: 394
Period size: 125 Copynumber: 2.2 Consensus size: 124
51932548 TCCTCTCAAT
** * * *
51932558 TTCCAGGACCTACTGTAGCAAAAGAACGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATA
1 TTCCAGGACCTACTGTAGCAAAAGCGCGTCCACAAGGCCGCGATTTCACAAATTCTTATCAAACA
** * **
51932623 GCATCCTGCTAGAAGTGATTTTATACTATTTTCTCAAAAATTTCAACTCAAAATTATATC
66 GCATCCTGCTAGAAGCAATTTTATACTATTTGCTCAAAAACGTCAACTCAAAATTAT-TC
* *
51932683 TTCCAAGACCTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTATCAAACA
1 TTCCAGGACCTACTGTAGCAAAAGCGCGTCCACAAGGCCGCGATTTCACAAATTCTTATCAAACA
* * * *
51932748 GCATCTTGCTAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT
66 GCATCCTGCTAGAAGCAATTTTATACTATTTGCTCAAAAACGTCAACTCAAAATTATTC
*
51932807 TTTCAGGACCTACTGTAGCAAAAGCGCGT
1 TTCCAGGACCTACTGTAGCAAAAGCGCGT
51932836 AAACGTAGGC
Statistics
Matches: 135, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
124 28 0.21
125 107 0.79
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (124 bp):
TTCCAGGACCTACTGTAGCAAAAGCGCGTCCACAAGGCCGCGATTTCACAAATTCTTATCAAACA
GCATCCTGCTAGAAGCAATTTTATACTATTTGCTCAAAAACGTCAACTCAAAATTATTC
Found at i:51933411 original size:41 final size:41
Alignment explanation
Indices: 51933366--51933444 Score: 142
Period size: 41 Copynumber: 1.9 Consensus size: 41
51933356 GAGAAAGAAA
51933366 GCATAACAAGGAAGGAGGTTAAGAAACAT-AGAACCCCAATT
1 GCATAACAAGGAAGGAGGTTAAGAAACATGA-AACCCCAATT
51933407 GCATAACAAGGAAGGAGGTTAAGAAACATGAAACCCCA
1 GCATAACAAGGAAGGAGGTTAAGAAACATGAAACCCCA
51933445 TTAATTGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 36 0.97
42 1 0.03
ACGTcount: A:0.47, C:0.18, G:0.23, T:0.13
Consensus pattern (41 bp):
GCATAACAAGGAAGGAGGTTAAGAAACATGAAACCCCAATT
Found at i:51945015 original size:51 final size:52
Alignment explanation
Indices: 51944960--51945057 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 52
51944950 TTTAATTAAT
* *
51944960 ATTAAAATT-TTAAAAAATTCA-AAAAGATTAT-AAAAATTATTTTTAAAAATC
1 ATTAAAATTATTAAAAAAGT-ATAAAA-ATTATAAAAAAATATTTTTAAAAATC
*
51945011 ATTAAAATTATTTAAAAAGTATAAAAATTATAAAAAAATATTTTTAA
1 ATTAAAATTATTAAAAAAGTATAAAAATTATAAAAAAATATTTTTAA
51945058 TATGTTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
51 15 0.37
52 26 0.63
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (52 bp):
ATTAAAATTATTAAAAAAGTATAAAAATTATAAAAAAATATTTTTAAAAATC
Found at i:51945026 original size:20 final size:20
Alignment explanation
Indices: 51944988--51945041 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
51944978 TCAAAAAGAT
51944988 TATAAAAATTATTTTTAAAAA-
1 TATAAAAATTA--TTTAAAAAG
*
51945009 TCATTAAAATTATTTAAAAAG
1 T-ATAAAAATTATTTAAAAAG
51945030 TATAAAAATTAT
1 TATAAAAATTAT
51945042 AAAAAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 18 0.62
21 2 0.07
22 9 0.31
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
TATAAAAATTATTTAAAAAG
Found at i:51950918 original size:15 final size:15
Alignment explanation
Indices: 51950894--51950928 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
51950884 AAATATATAT
*
51950894 GAACAGTAATCAATG
1 GAACAATAATCAATG
51950909 GAACAATAATCAATG
1 GAACAATAATCAATG
51950924 GAACA
1 GAACA
51950929 GTAAAATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
GAACAATAATCAATG
Found at i:51957766 original size:18 final size:18
Alignment explanation
Indices: 51957730--51957767 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51957720 TGATTTTCAG
*
51957730 GAAGATAAACAAAGGGTT
1 GAAGATAAACAAAGAGTT
51957748 GAAGA-AAACAATAGAGTT
1 GAAGATAAACAA-AGAGTT
51957766 GA
1 GA
51957768 GATCTTGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
GAAGATAAACAAAGAGTT
Found at i:51961655 original size:3 final size:3
Alignment explanation
Indices: 51961647--51961680 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
51961637 GCATACTTAT
51961647 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG G
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG G
51961681 GTTAAGGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:51963451 original size:5 final size:5
Alignment explanation
Indices: 51963441--51963466 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51963431 TTTTTAAAAT
51963441 TAATA TAATA TAATA TAATA TAATA T
1 TAATA TAATA TAATA TAATA TAATA T
51963467 TGTAACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:51968921 original size:172 final size:172
Alignment explanation
Indices: 51968635--51969155 Score: 1006
Period size: 172 Copynumber: 3.0 Consensus size: 172
51968625 CTCGAAACCA
*
51968635 AATAAGATAATCACTTGGTAAATATTGTAATACCATATGTTTCCACATGTAAGGTTTCATTTTAG
1 AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
*
51968700 GATGCAAATATTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
66 GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
51968765 TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
131 TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
51968807 AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
1 AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
51968872 GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
66 GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
51968937 TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
131 TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
51968979 AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
1 AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
51969044 GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
66 GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
* *
51969109 TTGAATTTAATAACAAACTAAATTGATTGTTTCTAAATGAAT
131 TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
51969151 AATAA
1 AATAA
51969156 TATCCAAATT
Statistics
Matches: 345, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 345 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (172 bp):
AATAAGATAATCACTTGGTAAATATTGTAATACCAAATGTTTCCACATGTAAGGTTTCATTTTAG
GATGCAAATGTTTCTAGCAAATAAAAGGTTGTCATAAATATTTAAATAACCAGTTCCAATAACAT
TTGAATTTAATAACAAACTAAATTGATTGTTTCCAAATGAAC
Found at i:51969897 original size:418 final size:418
Alignment explanation
Indices: 51969120--51969960 Score: 1122
Period size: 418 Copynumber: 2.0 Consensus size: 418
51969110 TGAATTTAAT
* *
51969120 AACAAACTAAATTGATTGTTTCTAAATGAATAATAATATCCAAATTTGTCCAACAAAAAAACATA
1 AACAAACTAAACTGATTGTTTCTAAATGAACAATAATATCCAAATTTGTCCAACAAAAAAACATA
* ** *
51969185 AACTAAATTGTGTCTAAAAGACAGTACAACAAAACTGTCTTTTAAATCTAAATGAAAATTAAAAA
66 AACTAAACTCCGTCTAAAAGACAGTACAACAAAACTGTCTTTTAAATCTAAATAAAAATTAAAAA
* * *
51969250 AAGTTCCTAATAACAACCTAAAATGCCCAATTGCTTCTACTTCCATCGATTTTCTATTGCCCACG
131 AAGTTCCTAATAACAACCTAAAATGCCCAATTGCTTCCACTTCCACCGATTTTCTATTGCCCACA
* * * * *
51969315 AAGATGTGTCTTTCACCATCACTTGACTTTCGGTAGCTTAGACAGCCTTGCATAGAAACACTTAT
196 AAGATGTGTCTTTCAACACCACTTGACTTTCGGTAGCTCAGACAACCTTGCACAGAAACACTTAT
* * *
51969380 GTGAGTAGTAGAACCAGAATCTATCCACCAGGTGTTTCTAGATACTGAAACTAAATTAACCTTAG
261 GTGAGTAGTAGAACCAAAATCTATCCACCAAGTGTTTCTAGACACTGAAACTAAATTAACCTTAG
* * **
51969445 AACATACTAAAGTAAGAATTACACCTTTATTTGCACGCCAAGCATCATATTT-AACACATTCTTT
326 AACAGACCAAAGTAAGAATTACAAATTTATTTGCACGCCAAGCATCATATTTGAA-ACATTCTTT
* *
51969509 CTTCACATGTCTAGACTCGTTACAAAAGA
390 CTTCACATGTCCAAACTCGTTACAAAAGA
* *
51969538 AACAAACTAAACTGATTGTTT-TCGAATGAACAATAATATCCAAAATTT-TCCAACAAAGAAACA
1 AACAAACTAAACTGATTGTTTCT-AAATGAACAATAATATCC-AAATTTGTCCAACAAAAAAACA
*
51969601 TAAACTAAACTCCGTCTAAAAGAC-GATACAACAAAATTGTCTTTTAAATCTAAATAAAAATTAA
64 TAAACTAAACTCCGTCTAAAAGACAG-TACAACAAAACTGTCTTTTAAATCTAAATAAAAATTAA
* * * *
51969665 ATAAA-TTCCTAATAGCAACCTAAAATGCCCAAATTGCTTCCATTTCTACCGATTTT-TCATTGC
128 AAAAAGTTCCTAATAACAACCTAAAATGCCC-AATTGCTTCCACTTCCACCGATTTTCT-ATTGC
* * * *
51969728 CCACAAAGATGTGTCTTTTAACACCACTTGGCTTTCGGTAGCTCAGGCAACCTTGCACAGGAACA
191 CCACAAAGATGTGTCTTTCAACACCACTTGACTTTCGGTAGCTCAGACAACCTTGCACAGAAACA
* * *
51969793 CTTATGTGAGTAGTAGAACTAAAAGT-TATCCACCAAGTGTTTCTAGGCACTGAAACTAACTTAA
256 CTTATGTGAGTAGTAGAACCAAAA-TCTATCCACCAAGTGTTTCTAGACACTGAAACTAAATTAA
* * * * * * ** * *
51969857 -TTTCAGAACAGGCCAAAGTAAGAATTATAAATTTATTTGCAGGCTAGGTGTGATATTTGGAACA
320 CCTT-AGAACAGACCAAAGTAAGAATTACAAATTTATTTGCACGCCAAGCATCATATTTGAAACA
*
51969921 TTCTTTCTTCACATGTCCAAACTTGTTACAAAAGA
384 TTCTTTCTTCACATGTCCAAACTCGTTACAAAAGA
51969956 AACAA
1 AACAA
51969961 CTCTCTGTAA
Statistics
Matches: 367, Mismatches: 48, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
417 29 0.08
418 330 0.90
419 8 0.02
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (418 bp):
AACAAACTAAACTGATTGTTTCTAAATGAACAATAATATCCAAATTTGTCCAACAAAAAAACATA
AACTAAACTCCGTCTAAAAGACAGTACAACAAAACTGTCTTTTAAATCTAAATAAAAATTAAAAA
AAGTTCCTAATAACAACCTAAAATGCCCAATTGCTTCCACTTCCACCGATTTTCTATTGCCCACA
AAGATGTGTCTTTCAACACCACTTGACTTTCGGTAGCTCAGACAACCTTGCACAGAAACACTTAT
GTGAGTAGTAGAACCAAAATCTATCCACCAAGTGTTTCTAGACACTGAAACTAAATTAACCTTAG
AACAGACCAAAGTAAGAATTACAAATTTATTTGCACGCCAAGCATCATATTTGAAACATTCTTTC
TTCACATGTCCAAACTCGTTACAAAAGA
Found at i:51973527 original size:25 final size:25
Alignment explanation
Indices: 51973485--51973537 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
51973475 ATTAGCAGAT
*
51973485 ATATATTATCTTAAAAATTATAAA-A
1 ATATACTATCTTAAAAATT-TAAAGA
51973510 ATATACTAT-TTAATAAATTTAAAGA
1 ATATACTATCTTAA-AAATTTAAAGA
51973535 ATA
1 ATA
51973538 AACATGTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
ATATACTATCTTAAAAATTTAAAGA
Found at i:51973944 original size:16 final size:15
Alignment explanation
Indices: 51973908--51973946 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
51973898 GTTTAGTCCC
*
51973908 TAGGGTTTTTTGGTT
1 TAGGGTTTTTTGGGT
51973923 TA-GGTTTTTTAGGGT
1 TAGGGTTTTTT-GGGT
51973938 TAGGGTTTT
1 TAGGGTTTT
51973947 GTTAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 8 0.38
15 7 0.33
16 6 0.29
ACGTcount: A:0.10, C:0.00, G:0.33, T:0.56
Consensus pattern (15 bp):
TAGGGTTTTTTGGGT
Found at i:51974007 original size:21 final size:21
Alignment explanation
Indices: 51973941--51974007 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
51973931 TTAGGGTTAG
51973941 GGTTTTGTTAAAATAATTTAA
1 GGTTTTGTTAAAATAATTTAA
* ** *** ** *
51973962 GATTAGGTTTGTATGGTTTAG
1 GGTTTTGTTAAAATAATTTAA
51973983 GGTTTTGTTAAAATAATTTAA
1 GGTTTTGTTAAAATAATTTAA
51974004 GGTT
1 GGTT
51974008 CTAGGTTTTA
Statistics
Matches: 28, Mismatches: 18, Indels: 0
0.61 0.39 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (21 bp):
GGTTTTGTTAAAATAATTTAA
Found at i:51974097 original size:34 final size:33
Alignment explanation
Indices: 51974053--51974167 Score: 124
Period size: 33 Copynumber: 3.5 Consensus size: 33
51974043 TTATTGTTCT
*
51974053 TTTTTTAAAAATTAATTAAATTAGAGTTTAAGGG
1 TTTTTAAAAAATTAATTAAATTAGAGTTT-AGGG
* * * *
51974087 TTTTTAAAAAATTAATTAATTTTGGGTTTAGTG
1 TTTTTAAAAAATTAATTAAATTAGAGTTTAGGG
* * **
51974120 TTTTTAAAAAATTAATTAAATTTGGGTTTA-TT
1 TTTTTAAAAAATTAATTAAATTAGAGTTTAGGG
*
51974152 TTTTTAAAAAAATAAT
1 TTTTTAAAAAATTAAT
51974168 ATTGTGATTA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 16 0.22
33 32 0.44
34 25 0.34
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (33 bp):
TTTTTAAAAAATTAATTAAATTAGAGTTTAGGG
Found at i:51974416 original size:125 final size:125
Alignment explanation
Indices: 51974224--51974556 Score: 463
Period size: 125 Copynumber: 2.6 Consensus size: 125
51974214 GATTTTAGTT
* * * * * *
51974224 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGATAG-TTCTAAACAATTAGAGTAAAA
1 TTTTTCTACAGTAGTTCCT-GAAAAATAATTTTGAGAAGA-CGTTTCTGAACAAATAGTGTCAAA
* * * *
51974288 AATGATTCAAGTAGGATGCACT-ATCAGCAAAATTGATGAAAAAAGCTCCTACGTGGACACTC
64 AATGCTTCAAGCAGGATGCACTGA-CAGCAAAATTGAAGAAAAAAGCTCCCACGTGGACACTC
*
51974350 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGTGAAGACGTTTCTGAACAAATAGTGTCAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAA
* * *
51974415 TGCTTCAAGCAGGATGCATTGACAGCAAAATTGAAGAAAGAAGCTCCCACGTGGACGCTC
66 TGCTTCAAGCAGGATGCACTGACAGCAAAATTGAAGAAAAAAGCTCCCACGTGGACACTC
*
51974475 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTG-AAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAA
* *
51974540 ACGCTTCAAGCATGATG
65 ATGCTTCAAGCAGGATG
51974557 GGACATGTAC
Statistics
Matches: 186, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
124 1 0.01
125 108 0.58
126 77 0.41
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAA
TGCTTCAAGCAGGATGCACTGACAGCAAAATTGAAGAAAAAAGCTCCCACGTGGACACTC
Found at i:51975762 original size:21 final size:21
Alignment explanation
Indices: 51975738--51975781 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
51975728 GTTCAGCTTT
*
51975738 CGGTGGGGGTTGGGGTTGCTC
1 CGGTGAGGGTTGGGGTTGCTC
*
51975759 CGGTGAGGGTTGTGGTTGCTC
1 CGGTGAGGGTTGGGGTTGCTC
51975780 CG
1 CG
51975782 ATTGTGGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.16, G:0.52, T:0.30
Consensus pattern (21 bp):
CGGTGAGGGTTGGGGTTGCTC
Found at i:51994857 original size:12 final size:12
Alignment explanation
Indices: 51994840--51994865 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51994830 CAAAACAGGC
51994840 TTTTAGCGGCGT
1 TTTTAGCGGCGT
51994852 TTTTAGCGGCGT
1 TTTTAGCGGCGT
51994864 TT
1 TT
51994866 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:51995020 original size:73 final size:73
Alignment explanation
Indices: 51994933--51995101 Score: 259
Period size: 73 Copynumber: 2.3 Consensus size: 73
51994923 AAAAAAAGCA
* * * *
51994933 TTAGCGTCGTTTTTGAGCAAAGCGCCGC-AAATAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTAGCGGCGTTTTTG-GTAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAACT
*
51994997 TTCGGGGAT
65 TTCAGGGAT
**
51995006 TTAGCGGCGTTTTTGGTAAAGCGCCGCAAAAAAACCTAAGCCCAACGATTCCGTTTTCTGAACTT
1 TTAGCGGCGTTTTTGGTAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAACTT
51995071 TCAGGGAT
66 TCAGGGAT
51995079 TTAGCGGCGTTTTTGGTAAAGCG
1 TTAGCGGCGTTTTTGGTAAAGCG
51995102 TCGCTAAAGG
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
72 11 0.12
73 77 0.88
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (73 bp):
TTAGCGGCGTTTTTGGTAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAACTT
TCAGGGAT
Found at i:51995391 original size:146 final size:146
Alignment explanation
Indices: 51995097--51995527 Score: 819
Period size: 146 Copynumber: 3.0 Consensus size: 146
51995087 GTTTTTGGTA
*
51995097 AAGCGTCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
*
51995162 TATAAAAAAAT-AAAAAATTTTAGAATAGCAAAACGGTGTCGTTTTGTTCAAAATGAAAAAATTT
66 TATAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
51995226 TGCGGCGCTTTATAAG
131 TGCGGCGCTTTATAAG
*
51995242 AAGCGCCGCTAAAGGTAAGCAATAGCGGTGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
51995307 TATAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
66 TATAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
51995372 TGCGGCGCTTTATAAG
131 TGCGGCGCTTTATAAG
51995388 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
1 AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
*
51995453 TATAAAAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
66 TATAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
51995518 TGCGGCGCTT
131 TGCGGCGCTT
51995528 CCTATAAAAA
Statistics
Matches: 280, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
145 74 0.26
146 206 0.74
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (146 bp):
AAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATT
TATAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTT
TGCGGCGCTTTATAAG
Found at i:51995524 original size:107 final size:107
Alignment explanation
Indices: 51995412--51995634 Score: 428
Period size: 107 Copynumber: 2.1 Consensus size: 107
51995402 GTAAGCAATA
*
51995412 GCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
1 GCGGCGCTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
51995477 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
66 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
*
51995519 GCGGCGCTTCCTATAAAAACTCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
1 GCGGCGCTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
51995584 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
66 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
51995626 GCGGCGCTT
1 GCGGCGCTT
51995635 TATAAGAAGC
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 114 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (107 bp):
GCGGCGCTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTT
Found at i:51995619 original size:253 final size:253
Alignment explanation
Indices: 51995273--51995780 Score: 944
Period size: 253 Copynumber: 2.0 Consensus size: 253
51995263 ATAGCGGTGT
51995273 TTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTAGAATAGCA
1 TTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTAGAATAGCA
*
51995338 AAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGG
66 AAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCAGCTAAAGG
51995403 TAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAA
131 TAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAA
** *
51995468 AATTTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGC
196 AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGACGC
* *
51995526 TTCCTATAAAAACTCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAGAATAGCA
1 TTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTAGAATAGCA
51995591 AAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCAGCTAAAGG
66 AAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCAGCTAAAGG
* *
51995656 TAAGCAATAGCGGTGTTTCCTATAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAA
131 TAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAA
51995721 AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGACGC
196 AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGACGC
51995779 TT
1 TT
51995781 TATAAGAAGC
Statistics
Matches: 247, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
253 247 1.00
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (253 bp):
TTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAATTTTAGAATAGCA
AAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCAGCTAAAGG
TAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAA
AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGACGC
Found at i:51995692 original size:146 final size:145
Alignment explanation
Indices: 51995519--51996007 Score: 784
Period size: 146 Copynumber: 3.3 Consensus size: 145
51995509 AAAAAATTTT
* *
51995519 GCGGCGCTTCCTATAAAAACTCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
1 GCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
51995584 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCAG
66 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGC-G
51995649 CTAAAGGTAAGCAATA
130 CTAAAGGTAAGCAATA
* * **
51995665 GCGGTGTTTCCTATAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAG
1 GCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
*
51995730 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGACGCTTTATAAGAAGCGCCG
66 AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCG-CG
*
51995795 CTAAAGGTAAACAATA
130 CTAAAGGTAAGCAATA
* * * *
51995811 GCGGCGTTT-TTATAAAAAACGCCGCAAAAAATTAATCAACTTATAAAAAAAATAAAAAATTGTT
1 GCGGCGTTTCCTAT-AAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAATAAAAAATTTTT
*
51995875 AGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAGGAAGCGT
64 AGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCG-
51995940 CGCTAAAGGTAAGCAATA
128 CGCTAAAGGTAAGCAATA
*
51995958 GCGGCGTTTTC-ATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
1 GCGGCGTTTCCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
51996008 TTCCCCAAAA
Statistics
Matches: 315, Mismatches: 23, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
145 3 0.01
146 178 0.57
147 134 0.43
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (145 bp):
GCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAATTTTTAG
AATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCGC
TAAAGGTAAGCAATA
Found at i:51996601 original size:14 final size:15
Alignment explanation
Indices: 51996573--51996605 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
51996563 AAGTTTTATA
51996573 GATTATGGAATTAGG
1 GATTATGGAATTAGG
51996588 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
51996602 GATT
1 GATT
51996606 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:51996647 original size:14 final size:14
Alignment explanation
Indices: 51996628--51996667 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
51996618 TTACTGTGAT
* *
51996628 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
51996642 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
51996656 TTAAGGGTTAGG
1 TTAAGGGTTAGG
51996668 TTAGGGGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:51996649 original size:7 final size:7
Alignment explanation
Indices: 51996628--51996677 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
51996618 TTACTGTGAT
*
51996628 TTAAGGT
1 TTAAGGG
*
51996635 TTATGGG
1 TTAAGGG
51996642 TTAAGGG
1 TTAAGGG
*
51996649 TTAGGGG
1 TTAAGGG
51996656 TTAAGGG
1 TTAAGGG
51996663 TT-A-GG
1 TTAAGGG
*
51996668 TTAGGGG
1 TTAAGGG
51996675 TTA
1 TTA
51996678 GATGTTAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 4 0.11
6 1 0.03
7 30 0.86
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (7 bp):
TTAAGGG
Found at i:51996684 original size:14 final size:12
Alignment explanation
Indices: 51996640--51996678 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
51996630 AAGGTTTATG
51996640 GGTTAAGGGTTA
1 GGTTAAGGGTTA
51996652 GGGGTTAAGGGTTA
1 --GGTTAAGGGTTA
*
51996666 GGTTAGGGGTTA
1 GGTTAAGGGTTA
51996678 G
1 G
51996679 ATGTTAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (12 bp):
GGTTAAGGGTTA
Found at i:51996741 original size:33 final size:35
Alignment explanation
Indices: 51996687--51996751 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 35
51996677 AGATGTTAAT
* *
51996687 AGTTAGGGATTTAGGGCTTAGAA-ATTTAGTGTTA
1 AGTTAGAGATTTAGGGCTTAGAATAATTAGTGTTA
*
51996721 AGTTAGAG-TTTAGGGTTTAGAATAATTAGTG
1 AGTTAGAGATTTAGGGCTTAGAATAATTAGTG
51996752 CATTTTAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 13 0.48
34 14 0.52
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (35 bp):
AGTTAGAGATTTAGGGCTTAGAATAATTAGTGTTA
Found at i:51996982 original size:7 final size:7
Alignment explanation
Indices: 51996972--51997024 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
51996962 GATTTAAGGT
51996972 TTAGGGG
1 TTAGGGG
*
51996979 TTAGAGG
1 TTAGGGG
51996986 TTAGGGG
1 TTAGGGG
51996993 TTAGGGG
1 TTAGGGG
* *
51997000 TTAAGAG
1 TTAGGGG
*
51997007 TTAGGGAT
1 TTAGGG-G
51997015 TTAGGGG
1 TTAGGGG
51997022 TTA
1 TTA
51997025 AGACTTAAGG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 31 0.84
8 6 0.16
ACGTcount: A:0.23, C:0.00, G:0.45, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:51997006 original size:22 final size:22
Alignment explanation
Indices: 51996972--51997027 Score: 80
Period size: 21 Copynumber: 2.6 Consensus size: 22
51996962 GATTTAAGGT
51996972 TTAGGGGTT-AGAGGTTAGGG-G
1 TTAGGGGTTAAGA-GTTAGGGAG
*
51996993 TTAGGGGTTAAGAGTTAGGGAT
1 TTAGGGGTTAAGAGTTAGGGAG
51997015 TTAGGGGTTAAGA
1 TTAGGGGTTAAGA
51997028 CTTAAGGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (22 bp):
TTAGGGGTTAAGAGTTAGGGAG
Found at i:51997036 original size:22 final size:22
Alignment explanation
Indices: 51996993--51997037 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
51996983 AGGTTAGGGG
* *
51996993 TTAGGGGTTAAGAGTTAGGGAT
1 TTAGGGGTTAAGACTTAAGGAT
51997015 TTAGGGGTTAAGACTTAAGGAT
1 TTAGGGGTTAAGACTTAAGGAT
51997037 T
1 T
51997038 CAAGGGTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.36, T:0.33
Consensus pattern (22 bp):
TTAGGGGTTAAGACTTAAGGAT
Found at i:51997044 original size:22 final size:22
Alignment explanation
Indices: 51996997--51997044 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
51996987 TAGGGGTTAG
* * * *
51996997 GGGTTAAGAGTTAGGGATTTAG
1 GGGTTAAGACTTAAGGATTCAA
51997019 GGGTTAAGACTTAAGGATTCAA
1 GGGTTAAGACTTAAGGATTCAA
51997041 GGGT
1 GGGT
51997045 CGGGTTAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.04, G:0.38, T:0.29
Consensus pattern (22 bp):
GGGTTAAGACTTAAGGATTCAA
Found at i:51997372 original size:19 final size:18
Alignment explanation
Indices: 51997343--51997396 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
51997333 GGACCAAATT
*
51997343 ATAAGAAATAAAATTAAA
1 ATAAAAAATAAAATTAAA
* *
51997361 ATACAAAAATAAAAATGAA
1 ATA-AAAAATAAAATTAAA
51997380 ATAAAAACACTAAAATT
1 ATAAAAA-A-TAAAATT
51997397 TTTAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.24
19 16 0.55
20 6 0.21
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (18 bp):
ATAAAAAATAAAATTAAA
Found at i:51997439 original size:28 final size:28
Alignment explanation
Indices: 51997414--51997495 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
51997404 TTATCTAATT
51997414 TTTATAAATATTACTTAAAAAACTAAAA
1 TTTATAAATATTACTTAAAAAACTAAAA
* **
51997442 TTTAT--A-ATT--TT----ATCTAATT
1 TTTATAAATATTACTTAAAAAACTAAAA
51997461 TTTATAAATATTACTTAAAAAACTAAAA
1 TTTATAAATATTACTTAAAAAACTAAAA
51997489 TTTATAA
1 TTTATAA
51997496 TTTTATCTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 18
0.62 0.10 0.29
Matches are distributed among these distances:
19 10 0.26
21 1 0.03
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 1 0.03
28 17 0.44
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (28 bp):
TTTATAAATATTACTTAAAAAACTAAAA
Found at i:51997450 original size:47 final size:47
Alignment explanation
Indices: 51997381--51997526 Score: 274
Period size: 47 Copynumber: 3.1 Consensus size: 47
51997371 AAAAATGAAA
*
51997381 TAAAAACACTAAAATTTTTAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAA-ACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
51997429 TAAAAAACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAAACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
51997476 TAAAAAACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
1 TAAAAAACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
51997523 TAAA
1 TAAA
51997527 CAAAACTATG
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
47 91 0.94
48 6 0.06
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (47 bp):
TAAAAAACTAAAATTTATAATTTTATCTAATTTTTATAAATATTACT
Found at i:52000380 original size:19 final size:18
Alignment explanation
Indices: 52000356--52000394 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
52000346 TTAATATTAC
52000356 TATA-AAAAAGATTGATG
1 TATATAAAAAGATTGATG
* *
52000373 TATATAAACAGGTTGATG
1 TATATAAAAAGATTGATG
52000391 TATA
1 TATA
52000395 GCTTGTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.33
Consensus pattern (18 bp):
TATATAAAAAGATTGATG
Found at i:52002273 original size:43 final size:43
Alignment explanation
Indices: 52002245--52002492 Score: 379
Period size: 43 Copynumber: 5.8 Consensus size: 43
52002235 ACTTTTATCA
* * * *
52002245 AAAGCGTCGCTAAAGATCATGTTTTTTAGTGGCGTTTGTGGTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
*
52002288 AAAGCGTCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
*
52002331 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGTTT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
* * *
52002374 AAAGCGCCGCTAAAGATCATGTTCTTTAGCAGCGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
* *
52002417 AAGGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
* *
52002460 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
1 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGC
52002493 GTTTTGCCTC
Statistics
Matches: 190, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 190 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCATTTGTGGTT
Found at i:52003631 original size:3 final size:3
Alignment explanation
Indices: 52003623--52003663 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
52003613 AGGAATCAGG
52003623 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
52003664 AGCTACTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:52008474 original size:41 final size:41
Alignment explanation
Indices: 52008393--52008475 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
52008383 TTTAATTAAA
52008393 TAATAATTCAAAGAAATTAATTTAATTACTAAGTCTTCTAT
1 TAATAATTCAAAGAAATTAATTTAATTACTAAGTCTTCTAT
*
52008434 TAATAATTCAAAGAAATTAATTTAATTACTAAGTTTTCTAT
1 TAATAATTCAAAGAAATTAATTTAATTACTAAGTCTTCTAT
52008475 T
1 T
52008476 GTTTATGGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (41 bp):
TAATAATTCAAAGAAATTAATTTAATTACTAAGTCTTCTAT
Found at i:52017841 original size:27 final size:26
Alignment explanation
Indices: 52017801--52017851 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
52017791 TTATTTTATC
*
52017801 AAAATAAATTTAAAAATCAAAAAACAA
1 AAAATAAATATAAAAAT-AAAAAACAA
*
52017828 AAAATTAATATAAAAATAAAAAAC
1 AAAATAAATATAAAAATAAAAAAC
52017852 TATCCTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.20
Consensus pattern (26 bp):
AAAATAAATATAAAAATAAAAAACAA
Found at i:52018263 original size:2 final size:2
Alignment explanation
Indices: 52018256--52018280 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
52018246 ATAAAAGAAG
52018256 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
52018281 AGGGTGAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:52022030 original size:23 final size:23
Alignment explanation
Indices: 52021986--52022031 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
52021976 ATATTACCAT
**
52021986 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
52022009 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
52022032 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:52022298 original size:19 final size:19
Alignment explanation
Indices: 52022263--52022299 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
52022253 ATATATTACC
**
52022263 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
52022282 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
52022300 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:52038197 original size:43 final size:43
Alignment explanation
Indices: 52038150--52038266 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
52038140 CATACGGGTA
* * * * *
52038150 CATCATCGGATGAATCGAAGTAGTTATATTGGCACACGCAGTG
1 CATCATCGGATAAATCGAAGTAATTATACTGACACAAGCAGTG
* * *
52038193 CATCATTGGATAAATCGAAGCAATTATACTGACACAAGTAGTG
1 CATCATCGGATAAATCGAAGTAATTATACTGACACAAGCAGTG
* * *
52038236 CATCATCGAATAAATTGAAGTAATCATACTG
1 CATCATCGGATAAATCGAAGTAATTATACTG
52038267 CACGTAAGTG
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (43 bp):
CATCATCGGATAAATCGAAGTAATTATACTGACACAAGCAGTG
Found at i:52040711 original size:11 final size:11
Alignment explanation
Indices: 52040695--52040730 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
52040685 ATGACCTTTA
52040695 TTTCACTATTT
1 TTTCACTATTT
52040706 TTTCACTATTT
1 TTTCACTATTT
52040717 TTTCACTATTT
1 TTTCACTATTT
52040728 TTT
1 TTT
52040731 GGAATGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTCACTATTT
Found at i:52043918 original size:67 final size:67
Alignment explanation
Indices: 52043810--52043943 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 67
52043800 GGTATATCCC
*
52043810 TCTCCTTTTTGCATTCTTTTTGGTTTCAGTGGTGAATTCTTCGTTCGATCGTTGGTGCTAGGATT
1 TCTCCTTTTTGCATTCTTTTTGGTTTCAGTGGTGAATTCTTCGTTCGATCATTGGTGCTAGGATT
52043875 TT
66 TT
* * *
52043877 TCTCCTTTTTGCATTCTTTTTGGTTTCGGTGGTGAATTCTTCGTTTGATCATTGGTGGTAGGATT
1 TCTCCTTTTTGCATTCTTTTTGGTTTCAGTGGTGAATTCTTCGTTCGATCATTGGTGCTAGGATT
52043942 TT
66 TT
52043944 GAGTTCTCTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.10, C:0.15, G:0.23, T:0.51
Consensus pattern (67 bp):
TCTCCTTTTTGCATTCTTTTTGGTTTCAGTGGTGAATTCTTCGTTCGATCATTGGTGCTAGGATT
TT
Found at i:52047635 original size:25 final size:25
Alignment explanation
Indices: 52047550--52047647 Score: 81
Period size: 25 Copynumber: 3.9 Consensus size: 25
52047540 ATGAGTGTCT
* * *
52047550 CGATATTTGGCTCTCACGAGCTTCT
1 CGATATATGGCTCTCATGAGCTTCC
* * * *
52047575 TGTTATATAGCTCTAATGAGCTTCC
1 CGATATATGGCTCTCATGAGCTTCC
*
52047600 CGAT-TAATGGCTCTCTTGAGCTTCC
1 CGATAT-ATGGCTCTCATGAGCTTCC
* * *
52047625 CGATATTTGGCTCGCAAGAGCTT
1 CGATATATGGCTCTCATGAGCTT
52047648 TTCGTTATAT
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
24 1 0.02
25 53 0.96
26 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (25 bp):
CGATATATGGCTCTCATGAGCTTCC
Found at i:52052722 original size:15 final size:17
Alignment explanation
Indices: 52052702--52052739 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
52052692 TTTAGTCTTG
*
52052702 ATGAATTAT-TGT-TAA
1 ATGAATTATATATATAA
52052717 ATGAATTATATATATAA
1 ATGAATTATATATATAA
52052734 ATGAAT
1 ATGAAT
52052740 ATGTTATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
16 2 0.10
17 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
ATGAATTATATATATAA
Found at i:52054235 original size:18 final size:18
Alignment explanation
Indices: 52054198--52054236 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
52054188 TTTAGAATTT
* *
52054198 TGGGCCCACATGCTCATG
1 TGGGCCCACAAGCCCATG
*
52054216 TGGGCCCACAAGCCCGTG
1 TGGGCCCACAAGCCCATG
52054234 TGG
1 TGG
52054237 CCAACACACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (18 bp):
TGGGCCCACAAGCCCATG
Found at i:52059690 original size:29 final size:29
Alignment explanation
Indices: 52059658--52059734 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
52059648 TTAACCACGG
*
52059658 ATTATGAACAAAATTGAAGGAATCAATGA
1 ATTATGAACAAAATTGAAGGAATCAACGA
* *
52059687 ATTATGAA-ATGAA-TGAAAGGAATCAACGG
1 ATTATGAACA-AAATTG-AAGGAATCAACGA
*
52059716 ATTATGAACAACATTGAAG
1 ATTATGAACAAAATTGAAG
52059735 AAAAATGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
28 3 0.08
29 33 0.85
30 3 0.08
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.23
Consensus pattern (29 bp):
ATTATGAACAAAATTGAAGGAATCAACGA
Found at i:52066186 original size:88 final size:88
Alignment explanation
Indices: 52066037--52066213 Score: 345
Period size: 88 Copynumber: 2.0 Consensus size: 88
52066027 GAAAGCAACT
52066037 TGATTAGTGCTTGTCCAATGATCTTGTCATAAGTGTACTCATATTTTATCTCATTAATCTCTGTG
1 TGATTAGTGCTTGTCCAATGATCTTGTCATAAGTGTACTCATATTTTATCTCATTAATCTCTGTG
52066102 AGATAATATTCATTCTCCCAATA
66 AGATAATATTCATTCTCCCAATA
*
52066125 TGATTAGTGCTTGTCCAATGATCTTGTCATAAGTGTGCTCATATTTTATCTCATTAATCTCTGTG
1 TGATTAGTGCTTGTCCAATGATCTTGTCATAAGTGTACTCATATTTTATCTCATTAATCTCTGTG
52066190 AGATAATATTCATTCTCCCAATA
66 AGATAATATTCATTCTCCCAATA
52066213 T
1 T
52066214 TATCTTATTT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (88 bp):
TGATTAGTGCTTGTCCAATGATCTTGTCATAAGTGTACTCATATTTTATCTCATTAATCTCTGTG
AGATAATATTCATTCTCCCAATA
Found at i:52068362 original size:24 final size:22
Alignment explanation
Indices: 52068315--52068362 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
52068305 ATCATGGTGG
52068315 AATTGCACTTAAGGCTTGGGTA
1 AATTGCACTTAAGGCTTGGGTA
* *
52068337 AATTGCATGTTAAGGACTTGGTTA
1 AATTGCA-CTTAAGG-CTTGGGTA
52068361 AA
1 AA
52068363 CACTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 9 0.41
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (22 bp):
AATTGCACTTAAGGCTTGGGTA
Found at i:52069534 original size:20 final size:21
Alignment explanation
Indices: 52069497--52069535 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
52069487 TGAAATAATA
*
52069497 TAATTTCTCATTTAATATATT
1 TAATTTCTCATATAATATATT
*
52069518 TAATTT-TCATATGATATA
1 TAATTTCTCATATAATATA
52069536 AATTATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (21 bp):
TAATTTCTCATATAATATATT
Found at i:52076786 original size:42 final size:42
Alignment explanation
Indices: 52076651--52076877 Score: 282
Period size: 42 Copynumber: 5.5 Consensus size: 42
52076641 TTTAAACAGA
* * * *
52076651 TTCACTGGCACTT-AGCCTGCTAGACTTAAAGCCTGAT-TCAG-
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATAT-TGT
* * * * * * *
52076692 TACACTGGCATTTAGCCTGCTCGACATATAGTCTGA-AATGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
52076733 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
* *
52076775 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
*
52076817 TTCACCGGCATTAAGCCTACTAGACGTAAAGTCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
52076859 TTCACCGGCATTAAGCCTG
1 TTCACCGGCATTAAGCCTG
52076878 ATAGGCACTG
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
40 3 0.02
41 58 0.36
42 101 0.62
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (42 bp):
TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
Found at i:52087596 original size:3 final size:3
Alignment explanation
Indices: 52087571--52087632 Score: 67
Period size: 3 Copynumber: 21.3 Consensus size: 3
52087561 TTTTTAAAGT
* * *
52087571 TTA TT- TTA TTA ATA TTG TTA TTA TTA -TA TTA TTA TCA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
52087616 TTA TATA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA T
52087633 ACCTGCATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
2 6 0.12
3 40 0.82
4 3 0.06
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:52087602 original size:8 final size:8
Alignment explanation
Indices: 52087589--52087629 Score: 66
Period size: 8 Copynumber: 5.1 Consensus size: 8
52087579 TTAATATTGT
52087589 TATTATTA
1 TATTATTA
52087597 TATTATTA
1 TATTATTA
52087605 TCATTATTA
1 T-ATTATTA
52087614 TATTA-TA
1 TATTATTA
52087621 TATTATTA
1 TATTATTA
52087629 T
1 T
52087630 TATACCTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.23
8 16 0.52
9 8 0.26
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
TATTATTA
Found at i:52087603 original size:17 final size:17
Alignment explanation
Indices: 52087571--52087633 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
52087561 TTTTTAAAGT
52087571 TTATT-TTATTA-A-TA
1 TTATTATTATTATATTA
*
52087585 TTGTTATTATTATATTA
1 TTATTATTATTATATTA
*
52087602 TTATCATTATTATATTA
1 TTATTATTATTATATTA
52087619 TATATTATTATTATA
1 T-TATTATTATTATA
52087634 CCTGCATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 4 0.10
15 6 0.15
16 1 0.02
17 18 0.44
18 12 0.29
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TTATTATTATTATATTA
Found at i:52087769 original size:10 final size:10
Alignment explanation
Indices: 52087744--52087847 Score: 53
Period size: 10 Copynumber: 11.1 Consensus size: 10
52087734 TTTCATAGTT
*
52087744 TTTATATAAA
1 TTTATATATA
*
52087754 TGTATATATA
1 TTTATATATA
52087764 -TT-TATAT-
1 TTTATATATA
52087771 TTTATA-ATA
1 TTTATATATA
*
52087780 TTTATACAT-
1 TTTATATATA
**
52087789 TTTCCATAT-
1 TTTATATATA
*
52087798 TTTATA-ATC
1 TTTATATATA
* *
52087807 TATATATATG
1 TTTATATATA
*
52087817 TTTATACATA
1 TTTATATATA
52087827 TTT-TATAATA
1 TTTATAT-ATA
*
52087837 TGTATATATA
1 TTTATATATA
52087847 T
1 T
52087848 ATTCATACAC
Statistics
Matches: 71, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
8 11 0.15
9 26 0.37
10 31 0.44
11 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (10 bp):
TTTATATATA
Found at i:52087797 original size:27 final size:28
Alignment explanation
Indices: 52087767--52087842 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 28
52087757 ATATATATTT
* *
52087767 ATATTTTATAATATTTATACATTT-TCC
1 ATATTTTATAATATATATACATTTATAC
**
52087794 ATATTTTATAATCTATATATATGTTTATAC
1 ATATTTTATAA--TATATATACATTTATAC
*
52087824 ATATTTTATAATATGTATA
1 ATATTTTATAATATATATA
52087843 TATATATTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 11 0.27
28 7 0.17
29 10 0.24
30 13 0.32
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (28 bp):
ATATTTTATAATATATATACATTTATAC
Found at i:52087844 original size:22 final size:23
Alignment explanation
Indices: 52087807--52087850 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
52087797 TTTTATAATC
*
52087807 TATATATATGTTTATACATATTT
1 TATATATATGTATATACATATTT
*
52087830 TATA-ATATGTATATATATATT
1 TATATATATGTATATACATATT
52087851 CATACACTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (23 bp):
TATATATATGTATATACATATTT
Found at i:52087856 original size:32 final size:30
Alignment explanation
Indices: 52087793--52087861 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 30
52087783 ATACATTTTC
* *
52087793 CATATTTTATAATCTATATATATGTTTATA
1 CATATTTTATAATCTATATATATATTCATA
*
52087823 CATATTTTATAATATGTATATATATATTCATA
1 CATATTTTAT-A-ATCTATATATATATTCATA
52087855 CACTATT
1 CA-TATT
52087862 CAAAACTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 10 0.30
31 1 0.03
32 18 0.55
33 4 0.12
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.51
Consensus pattern (30 bp):
CATATTTTATAATCTATATATATATTCATA
Found at i:52097292 original size:50 final size:49
Alignment explanation
Indices: 52097114--52097396 Score: 163
Period size: 50 Copynumber: 5.7 Consensus size: 49
52097104 TTGGCATTAC
* * *
52097114 AGTGGAATAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCAGTGT
* * * * ** * ** * * * *
52097164 AGTGGAACAGACTAAAACCACGATAGCGGATCTTGTTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTT-CCTGGCAGTGT
* ** * ** * *
52097214 AATTAAAAAGATTGAAGTTACAATGGCGAATCTTACTTCCTTGGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCC-TGGCAGTGT
* ** * * *
52097264 AGTGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTTCC-GACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTT-ACTTCCTGGCAGTGT
* * * * *
52097313 AATTGAAAAGATTGAAGCCACAATGACGAATCTTACTTTCCTGGCAGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTAC-TTCCTGGCAGTGT
* * * *
52097363 AGTGGAACATATTGAAGCTACGACTGCGAATCTT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTT
52097397 GTTTCCCGAC
Statistics
Matches: 160, Mismatches: 69, Indels: 8
0.68 0.29 0.03
Matches are distributed among these distances:
49 38 0.24
50 118 0.74
51 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (49 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCTGGCAGTGT
Found at i:52097330 original size:49 final size:49
Alignment explanation
Indices: 52097266--52097408 Score: 133
Period size: 49 Copynumber: 2.9 Consensus size: 49
52097256 GGCGGTGTAG
*
52097266 TGGAACAGATTGAAGCCACGACGGCGAATCTTGTTTTCCGACATTGCAA
1 TGGAAAAGATTGAAGCCACGACGGCGAATCTTGTTTTCCGACATTGCAA
* * * * ** * * * *
52097315 TTGAAAAGATTGAAGCCACAATGACGAATCTTACTTTCCTGGCAGTGTAG
1 TGGAAAAGATTGAAGCCACGACGGCGAATCTTGTTTTCC-GACATTGCAA
* * * * *
52097365 TGGAACATATTGAAGCTACGACTGCGAATCTTGTTTCCCGACAT
1 TGGAAAAGATTGAAGCCACGACGGCGAATCTTGTTTTCCGACAT
52097409 CACAGTTAAA
Statistics
Matches: 69, Mismatches: 24, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
49 35 0.51
50 34 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (49 bp):
TGGAAAAGATTGAAGCCACGACGGCGAATCTTGTTTTCCGACATTGCAA
Found at i:52097363 original size:99 final size:99
Alignment explanation
Indices: 52097122--52097408 Score: 387
Period size: 99 Copynumber: 2.9 Consensus size: 99
52097112 ACAGTGGAAT
* * * * * *
52097122 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGACTAAAACCACGA
1 AGATTGAAGCCACAATGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGA
* *
52097187 TAGCGGATCTTGTTTCCCCGACATTGCAATTAAAA
66 CAGCGAATCTTGTTT-CCCGACATTGCAATTAAAA
**
52097222 AGATTGAAGTTACAATGGCGAATCTTAC-TTCCTTGGCGGTGTAGTGGAACAGATTGAAGCCACG
1 AGATTGAAGCCACAATGGCGAATCTTACTTTCC-TGGCGGTGTAGTGGAACAGATTGAAGCCACG
* * *
52097286 ACGGCGAATCTTGTTTTCCGACATTGCAATTGAAA
65 ACAGCGAATCTTGTTTCCCGACATTGCAATTAAAA
* * * *
52097321 AGATTGAAGCCACAATGACGAATCTTACTTTCCTGGCAGTGTAGTGGAACATATTGAAGCTACGA
1 AGATTGAAGCCACAATGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGA
*
52097386 CTGCGAATCTTGTTTCCCGACAT
66 CAGCGAATCTTGTTTCCCGACAT
52097409 CACAGTTAAA
Statistics
Matches: 164, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
99 95 0.58
100 69 0.42
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (99 bp):
AGATTGAAGCCACAATGGCGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGA
CAGCGAATCTTGTTTCCCGACATTGCAATTAAAA
Found at i:52098887 original size:3 final size:3
Alignment explanation
Indices: 52098881--52098922 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
52098871 ATAATAATAA
*
52098881 TAT TAT TAT TAT TAT TAT CAT TAT TA- TAT TAT ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
52098923 ACCTACATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:52099102 original size:27 final size:27
Alignment explanation
Indices: 52099057--52099108 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
52099047 ATATATATTT
*
52099057 ATATTTTATAATATTTATACATTTTCC
1 ATATTTTATAATATATATACATTTTCC
* *
52099084 ATATTTTATAATCTATATATATTTT
1 ATATTTTATAATATATATACATTTT
52099109 TATACATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (27 bp):
ATATTTTATAATATATATACATTTTCC
Found at i:52102252 original size:13 final size:13
Alignment explanation
Indices: 52102236--52102288 Score: 70
Period size: 13 Copynumber: 4.1 Consensus size: 13
52102226 TTTAAACAAA
52102236 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
52102249 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* * *
52102262 ACTTTTCCACATC
1 ACTTTTCAAAAGC
52102275 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
52102288 A
1 A
52102289 TTACCGAACT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:52105655 original size:17 final size:18
Alignment explanation
Indices: 52105619--52105660 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
52105609 AAGTATACTA
*
52105619 ATAATCATGAATAACCAAT
1 ATAAT-ATGAATAAACAAT
*
52105638 A-AATATGAATAAATAAT
1 ATAATATGAATAAACAAT
52105655 ATAATA
1 ATAATA
52105661 CATATGCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 12 0.60
18 7 0.35
19 1 0.05
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAATATGAATAAACAAT
Found at i:52106077 original size:42 final size:42
Alignment explanation
Indices: 52105983--52106150 Score: 246
Period size: 42 Copynumber: 4.0 Consensus size: 42
52105973 CAAACAAAAA
*
52105983 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTTTTTACAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTTACAAG
* *
52106026 CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACAAG
* *
52106068 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACAAG
* * * *
52106110 CGCCGCGAAAGAACATGTTCTTTAGTGGCGCTTTTATACAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACAA
52106151 AAATGCCACT
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
42 85 0.75
43 28 0.25
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTACAAG
Found at i:52106234 original size:14 final size:14
Alignment explanation
Indices: 52106211--52106244 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
52106201 GCCCTCCTGT
*
52106211 AGCAAAAATTCAAA
1 AGCAACAATTCAAA
52106225 AGCAACAATTCAAA
1 AGCAACAATTCAAA
52106239 AGCAAC
1 AGCAAC
52106245 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.21, G:0.09, T:0.12
Consensus pattern (14 bp):
AGCAACAATTCAAA
Found at i:52106494 original size:21 final size:21
Alignment explanation
Indices: 52106468--52106538 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
52106458 TTTTGCTCTG
* *
52106468 CTCTGCTTCTCTCACTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
52106489 CTCTGCTTCCCTCGCTGCAG-
1 CTCTGCTTCCCTCGCTGCAGC
* *
52106509 CTGCTGCTTCCCTCGCTTCTGC
1 CT-CTGCTTCCCTCGCTGCAGC
52106531 CTCTGCTT
1 CTCTGCTT
52106539 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.05
21 40 0.91
22 2 0.05
ACGTcount: A:0.04, C:0.44, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:52112065 original size:51 final size:51
Alignment explanation
Indices: 52111982--52112250 Score: 468
Period size: 51 Copynumber: 5.2 Consensus size: 51
52111972 CAATGGTAAG
*
52111982 TTATGTAAGTTATGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-TGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
52112034 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
*
52112085 TTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
*
52112136 TTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
52112187 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAG-T-TGTAAGTTAAATGTA
52112240 TTATGTAAGTT
1 TTATGTAAGTT
52112251 ATCTAAGTTA
Statistics
Matches: 211, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
50 9 0.04
51 166 0.79
52 10 0.05
53 26 0.12
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (51 bp):
TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
Found at i:52112584 original size:35 final size:35
Alignment explanation
Indices: 52112472--52112584 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
52112462 ATAAAATAAC
52112472 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
52112507 ATTTT-TTTATAATTATTAATAATATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGT--CAAT-TTTAATATTCCACAT
52112545 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
52112580 ATTTT
1 ATTTT
52112585 TTATATTTTA
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 17 0.30
36 3 0.05
37 3 0.05
38 12 0.21
39 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:52112596 original size:73 final size:73
Alignment explanation
Indices: 52112441--52112586 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
52112431 ACATTACTAA
52112441 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
52112506 TATTTTTT
66 TATTTTTT
52112514 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
52112579 TATTTTTT
66 TATTTTTT
52112587 ATATTTTATT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:52112819 original size:13 final size:13
Alignment explanation
Indices: 52112801--52112842 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
52112791 TAAATTTTAG
*
52112801 TAAGTAATGTATT
1 TAAGTAATATATT
*
52112814 TAAGTAACATATT
1 TAAGTAATATATT
*
52112827 TAAGTAATAAATT
1 TAAGTAATATATT
52112840 TAA
1 TAA
52112843 ACAAATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:52112869 original size:17 final size:17
Alignment explanation
Indices: 52112847--52113038 Score: 208
Period size: 17 Copynumber: 10.6 Consensus size: 17
52112837 ATTTAAACAA
52112847 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
52112864 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
52112881 ATTTTAGTAAGTAATTT
1 ATTTTAGTAAGTAATGT
52112898 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
52112915 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
52112932 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
52112955 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
52112972 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
52112989 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
52113012 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
52113029 ATTTTAGTAA
1 ATTTTAGTAA
52113039 TAAATTTAAC
Statistics
Matches: 153, Mismatches: 6, Indels: 32
0.80 0.03 0.17
Matches are distributed among these distances:
16 2 0.01
17 120 0.78
23 29 0.19
24 2 0.01
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Done.