Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 168 of 222
Found at i:53824471 original size:46 final size:47
Alignment explanation
Indices: 53824416--53824515 Score: 139
Period size: 47 Copynumber: 2.1 Consensus size: 47
53824406 GCCAAATCGG
* *
53824416 ATATATGTGGTCAAGCCACTAT-ATTGCAGCCAAGTTGCCAGAACAA
1 ATATATGTGGTCAAGCCACTATAAATGCAGCCAAGCTGCCAGAACAA
* * *
53824462 ATATGTGTGGTCGAGCCACTATAAATGCAGTCAAGCTGCCAGAACAA
1 ATATATGTGGTCAAGCCACTATAAATGCAGCCAAGCTGCCAGAACAA
*
53824509 AAATATG
1 ATATATG
53824516 GTTAAATCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 20 0.43
47 26 0.57
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (47 bp):
ATATATGTGGTCAAGCCACTATAAATGCAGCCAAGCTGCCAGAACAA
Found at i:53826273 original size:16 final size:16
Alignment explanation
Indices: 53826249--53826301 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
53826239 TGGTTCACTA
* *
53826249 TAATGGAATAGAGCTG
1 TAATTGAATAGAGTTG
53826265 TAATTGAATAGAGTTG
1 TAATTGAATAGAGTTG
*
53826281 TAATAGAATAGAGTTG
1 TAATTGAATAGAGTTG
53826297 TAATT
1 TAATT
53826302 AGTAATTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.34
Consensus pattern (16 bp):
TAATTGAATAGAGTTG
Found at i:53826539 original size:58 final size:57
Alignment explanation
Indices: 53826467--53826600 Score: 178
Period size: 58 Copynumber: 2.3 Consensus size: 57
53826457 TTGTTATTAA
* * * * * *
53826467 ATTTTAATAAAATTATTTTTAAATATATTTTAATAAAAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAATACAATTTAAT-AAAATAATAAATAATTTAATAAC
* *
53826525 ATTTTAACATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAAC
53826582 ATTCTTAATATAATTATTA
1 ATT-TTAATATAATTATTA
53826601 CAATATGAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
57 23 0.35
58 43 0.65
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAAC
Found at i:53826640 original size:23 final size:21
Alignment explanation
Indices: 53826609--53826651 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
53826599 TACAATATGA
53826609 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
53826632 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
53826652 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:53835687 original size:18 final size:18
Alignment explanation
Indices: 53835645--53835687 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
53835635 GCCCATTCCG
*
53835645 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
53835663 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
53835681 AAGTATG
1 AAGTATG
53835688 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:53836192 original size:28 final size:28
Alignment explanation
Indices: 53836124--53836305 Score: 269
Period size: 28 Copynumber: 6.5 Consensus size: 28
53836114 CATGAGATTG
* * *
53836124 GCACTAAGTGTGCGGGTTTAAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTGATTATGT--A
53836153 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
53836181 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
53836209 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
53836237 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
53836265 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
53836292 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
53836306 GACATAATAT
Statistics
Matches: 145, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 24 0.17
28 98 0.68
29 20 0.14
30 3 0.02
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:53843778 original size:21 final size:22
Alignment explanation
Indices: 53843746--53843788 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
53843736 GAAAATAAAA
*
53843746 TTTTATATATAGTTTGTAACTT
1 TTTTATATATAGTTTCTAACTT
53843768 TTTTATA-ATAGTTTCTAACTT
1 TTTTATATATAGTTTCTAACTT
53843789 AAATTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (22 bp):
TTTTATATATAGTTTCTAACTT
Found at i:53848487 original size:37 final size:36
Alignment explanation
Indices: 53848436--53848543 Score: 107
Period size: 37 Copynumber: 2.9 Consensus size: 36
53848426 ATTTCAAAAA
*
53848436 TAATATTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTTTAATATT-AATTTAATAT
*
53848472 TAATACTTATCTTAATAGTATT-TTATTAATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAATTTAATAT
*
53848509 TAAAGTGATTATCTTAATA-TTAAAT-TTAATTTAAT
1 T-AA-T-ATTATCTTAATAGTTTAATATTAATTTAAT
53848544 GTTTATCTTG
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
36 13 0.21
37 29 0.48
38 6 0.10
39 12 0.20
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAATTTAATAT
Found at i:53850752 original size:101 final size:102
Alignment explanation
Indices: 53850627--53850811 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
53850617 AAAGTGATGG
* *
53850627 TCACATGTGTAGTACTATGTGCAGGCTACTATGTATACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTATACCGG-ATGATAATGATCACATGTGTAGT
*
53850690 ACTATGTGCAGGCTACTATGCGTATCGGATAGTTTCGA
65 ACTATGTACAGGCTACTATGCGTATCGGATAGTTTCGA
* * * *
53850728 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAATGATCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTATACCGGATGATAATGATCACATGTGTAGTA
*
53850793 GTATGTACAGGCTACTATG
66 CTATGTACAGGCTACTATG
53850812 TGAACCGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 31 0.42
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTATACCGGATGATAATGATCACATGTGTAGTA
CTATGTACAGGCTACTATGCGTATCGGATAGTTTCGA
Found at i:53850758 original size:51 final size:51
Alignment explanation
Indices: 53850627--53850813 Score: 236
Period size: 51 Copynumber: 3.7 Consensus size: 51
53850617 AAAGTGATGG
* * * *
53850627 TCACATGTGTAGTACTATGTGCAGGCTACTATGTATACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATAGTAAT-GA
* * *
53850677 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATAGTAAT-GA
* *
53850728 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAATGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATAGTAATGA
* *
53850779 TCACATGTGTAGTAGTATGTACAGGCTACTATGTG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTG
53850814 AACCGAACAT
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
50 38 0.32
51 79 0.66
52 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATAGTAATGA
Found at i:53850849 original size:38 final size:39
Alignment explanation
Indices: 53850802--53850896 Score: 93
Period size: 45 Copynumber: 2.3 Consensus size: 39
53850792 AGTATGTACA
* *
53850802 GGCTACTATGTGA-ACCGAACATCATTGATTAGTAAGGT
1 GGCTGCTATGTGACACCGAACATCATTGATTAATAAGGT
*
53850840 GGCTGCTATGTGTTGATTCCACCGGACATCATTGATTAATAAGGT
1 GGCTGCTA--TG-TGA---CACCGAACATCATTGATTAATAAGGT
*
53850885 GGTTGCTATGTG
1 GGCTGCTATGTG
53850897 CTGAATCCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
38 7 0.15
40 2 0.04
41 3 0.07
42 2 0.04
43 2 0.04
45 30 0.65
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (39 bp):
GGCTGCTATGTGACACCGAACATCATTGATTAATAAGGT
Found at i:53850871 original size:45 final size:45
Alignment explanation
Indices: 53850815--53850909 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
53850805 TACTATGTGA
* * *
53850815 ACCGAACATCATTGATTAGTAAGGTGGCTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTGAATCC
* *
53850860 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTGAATCC
53850905 ACCGA
1 ACCGA
53850910 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGCTGCTATGTGCTGAATCC
Found at i:53855033 original size:21 final size:21
Alignment explanation
Indices: 53854994--53855035 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
53854984 TTAAAAACAA
*
53854994 GTATCGATACTTTGGCATTTG
1 GTATCGATACTTTGCCATTTG
53855015 GTATCGATAC-TTGACCATTTG
1 GTATCGATACTTTG-CCATTTG
53855036 AACAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (21 bp):
GTATCGATACTTTGCCATTTG
Found at i:53860047 original size:9 final size:9
Alignment explanation
Indices: 53860035--53860078 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
53860025 AACGAGAAAG
53860035 TTGAGAGAC
1 TTGAGAGAC
53860044 TTGAGAGAC
1 TTGAGAGAC
**
53860053 TTGAGAGGT
1 TTGAGAGAC
*
53860062 TTGAGAGAG
1 TTGAGAGAC
53860071 TTGAGAGA
1 TTGAGAGA
53860079 AGGATGTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.32, C:0.05, G:0.39, T:0.25
Consensus pattern (9 bp):
TTGAGAGAC
Found at i:53869921 original size:381 final size:381
Alignment explanation
Indices: 53869212--53869980 Score: 1529
Period size: 381 Copynumber: 2.0 Consensus size: 381
53869202 TCCATCAGTC
*
53869212 TCTGACGGTATCAGAATTTGCTAATCAACATCTATGAATATTTGTTCCCTTTCATGAAATATGGC
1 TCTGAGGGTATCAGAATTTGCTAATCAACATCTATGAATATTTGTTCCCTTTCATGAAATATGGC
53869277 TTTATACCTATCTCTCAGTGATTAATCCTTTCCTTGTTTTCCAGCTCAATCAAACTGATAAAGTT
66 TTTATACCTATCTCTCAGTGATTAATCCTTTCCTTGTTTTCCAGCTCAATCAAACTGATAAAGTT
53869342 GCTACCAAGGCAGTGAATATTTCAAGTCACAAACTTGATAGGGCCTTTCGAAGATAATGACAGTG
131 GCTACCAAGGCAGTGAATATTTCAAGTCACAAACTTGATAGGGCCTTTCGAAGATAATGACAGTG
53869407 GATATGTACATGACTGGTTAAGTAAGAAAGCAACTTCAACATTCCACAGAATGGAATACTGGAAA
196 GATATGTACATGACTGGTTAAGTAAGAAAGCAACTTCAACATTCCACAGAATGGAATACTGGAAA
53869472 GCACTTAGATCACAAGCCATGAATGTTGTTAATGGCAAATTAACAACATACTAAATGCAATGATT
261 GCACTTAGATCACAAGCCATGAATGTTGTTAATGGCAAATTAACAACATACTAAATGCAATGATT
53869537 TATGAAACATAACATGTGAGGAAATGTGCAGATGAAAGATTAAAATTTTAATCATA
326 TATGAAACATAACATGTGAGGAAATGTGCAGATGAAAGATTAAAATTTTAATCATA
53869593 TCTGAGGGTATCAGAATTTGCTAATCAACATCTATGAATATTTGTTCCCTTTCATGAAATATGGC
1 TCTGAGGGTATCAGAATTTGCTAATCAACATCTATGAATATTTGTTCCCTTTCATGAAATATGGC
53869658 TTTATACCTATCTCTCAGTGATTAATCCTTTCCTTGTTTTCCAGCTCAATCAAACTGATAAAGTT
66 TTTATACCTATCTCTCAGTGATTAATCCTTTCCTTGTTTTCCAGCTCAATCAAACTGATAAAGTT
53869723 GCTACCAAGGCAGTGAATATTTCAAGTCACAAACTTGATAGGGCCTTTCGAAGATAATGACAGTG
131 GCTACCAAGGCAGTGAATATTTCAAGTCACAAACTTGATAGGGCCTTTCGAAGATAATGACAGTG
53869788 GATATGTACATGACTGGTTAAGTAAGAAAGCAACTTCAACATTCCACAGAATGGAATACTGGAAA
196 GATATGTACATGACTGGTTAAGTAAGAAAGCAACTTCAACATTCCACAGAATGGAATACTGGAAA
53869853 GCACTTAGATCACAAGCCATGAATGTTGTTAATGGCAAATTAACAACATACTAAATGCAATGATT
261 GCACTTAGATCACAAGCCATGAATGTTGTTAATGGCAAATTAACAACATACTAAATGCAATGATT
53869918 TATGAAACATAACATGTGAGGAAATGTGCAGATGAAAGATTAAAATTTTAATCATA
326 TATGAAACATAACATGTGAGGAAATGTGCAGATGAAAGATTAAAATTTTAATCATA
53869974 TCTGAGG
1 TCTGAGG
53869981 TGGTTATAAG
Statistics
Matches: 387, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
381 387 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (381 bp):
TCTGAGGGTATCAGAATTTGCTAATCAACATCTATGAATATTTGTTCCCTTTCATGAAATATGGC
TTTATACCTATCTCTCAGTGATTAATCCTTTCCTTGTTTTCCAGCTCAATCAAACTGATAAAGTT
GCTACCAAGGCAGTGAATATTTCAAGTCACAAACTTGATAGGGCCTTTCGAAGATAATGACAGTG
GATATGTACATGACTGGTTAAGTAAGAAAGCAACTTCAACATTCCACAGAATGGAATACTGGAAA
GCACTTAGATCACAAGCCATGAATGTTGTTAATGGCAAATTAACAACATACTAAATGCAATGATT
TATGAAACATAACATGTGAGGAAATGTGCAGATGAAAGATTAAAATTTTAATCATA
Found at i:53871932 original size:24 final size:24
Alignment explanation
Indices: 53871875--53871947 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
53871865 GGCTACTCAT
* *
53871875 CTGGAAGAAACAGTTATGTCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
53871899 CTGGAAGAAGCAGTCATGTCAGCG
1 CTGGAAGAAGCAGTCATGTCAGCA
* * *
53871923 CTGGAAGAAGTAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
53871947 C
1 C
53871948 AATTACCCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.30, T:0.16
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:53877162 original size:5 final size:5
Alignment explanation
Indices: 53877152--53877189 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
53877142 AAATGAATCA
*
53877152 ATTGT ATTGT ATTGT ATTGC ATTGT ATTGT ATTGT ATT
1 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATT
53877190 TTACATCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.21, C:0.03, G:0.18, T:0.58
Consensus pattern (5 bp):
ATTGT
Found at i:53878159 original size:17 final size:17
Alignment explanation
Indices: 53878105--53878159 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
53878095 TCCTGATTGG
* *
53878105 TTTATTAATTTTTGTCA
1 TTTATTTATTTTTGTTA
* * *
53878122 TTTTTTTATTTTTCTTT
1 TTTATTTATTTTTGTTA
*
53878139 TTTATTTATTTTAGTTA
1 TTTATTTATTTTTGTTA
53878156 TTTA
1 TTTA
53878160 AATTCTCTCA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (17 bp):
TTTATTTATTTTTGTTA
Found at i:53883751 original size:18 final size:18
Alignment explanation
Indices: 53883728--53883762 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
53883718 TAGTGTATAG
53883728 CCCATATATGTGAACCCA
1 CCCATATATGTGAACCCA
*
53883746 CCCATATGTGTGAACCC
1 CCCATATATGTGAACCC
53883763 TTATATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (18 bp):
CCCATATATGTGAACCCA
Found at i:53883954 original size:21 final size:23
Alignment explanation
Indices: 53883913--53883972 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
53883903 TATATAACCG
*
53883913 TACATGTTTAGTATGTG-AAAC-A
1 TACATGTTTA-TATATGCAAACTA
*
53883935 -ATATGTTTATATATGCAAACTA
1 TACATGTTTATATATGCAAACTA
53883957 TACATGTTTAT-TATGC
1 TACATGTTTATATATGC
53883973 GAACCCCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 5 0.16
21 12 0.38
22 6 0.19
23 9 0.28
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (23 bp):
TACATGTTTATATATGCAAACTA
Found at i:53884135 original size:111 final size:112
Alignment explanation
Indices: 53883995--53884219 Score: 373
Period size: 111 Copynumber: 2.0 Consensus size: 112
53883985 TGTGAATATG
53883995 CAAACCCTACATATTGTAGTATGCGAATCCTATCTATTTCC-ACTAAGCAAACCTTACATGTTTT
1 CAAACCCTACATATTGTAGTATGCGAATCCTATCTA-TTCCTACTAAGCAAACCTTACATGTTTT
53884059 ATATGTGAA-CCTATATGTATATTCATGTGAACCCTAAGAGGAATGTA
65 ATATGTGAACCCTATATGTATATTCATGTGAACCCTAAGAGGAATGTA
* * *
53884106 CAAACCCTACATATTGTAGTATGTGAATCCTATCTATTCCTGCTATGCAAACCTTACATGTTTTA
1 CAAACCCTACATATTGTAGTATGCGAATCCTATCTATTCCTACTAAGCAAACCTTACATGTTTTA
* * *
53884171 TATGTGAACCCTATATGTATATTCATGTGAGCCTTAGGAGGAATGTA
66 TATGTGAACCCTATATGTATATTCATGTGAACCCTAAGAGGAATGTA
53884218 CA
1 CA
53884220 TGCAATCCTT
Statistics
Matches: 106, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
110 4 0.04
111 65 0.61
112 37 0.35
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (112 bp):
CAAACCCTACATATTGTAGTATGCGAATCCTATCTATTCCTACTAAGCAAACCTTACATGTTTTA
TATGTGAACCCTATATGTATATTCATGTGAACCCTAAGAGGAATGTA
Found at i:53884271 original size:17 final size:17
Alignment explanation
Indices: 53884249--53884283 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
53884239 AACAAACAAG
53884249 CCCCACTTATACAAACT
1 CCCCACTTATACAAACT
53884266 CCCCACTTATACAAACT
1 CCCCACTTATACAAACT
53884283 C
1 C
53884284 TATAGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (17 bp):
CCCCACTTATACAAACT
Found at i:53884392 original size:30 final size:30
Alignment explanation
Indices: 53884348--53884406 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
53884338 CTATAATATG
* * *
53884348 CGAACCTTATATGTGTGAACCCTATTTGTA
1 CGAACCCTACATGTGTGAACCCTACTTGTA
53884378 CGAACCCTACATGTGTGAACCCTACTTGT
1 CGAACCCTACATGTGTGAACCCTACTTGT
53884407 GAACCTGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (30 bp):
CGAACCCTACATGTGTGAACCCTACTTGTA
Found at i:53884397 original size:15 final size:15
Alignment explanation
Indices: 53884358--53884411 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
53884348 CGAACCTTAT
*
53884358 ATGTGTGAACCCTAT
1 ATGTGTGAACCCTAC
* **
53884373 TTGTACGAACCCTAC
1 ATGTGTGAACCCTAC
53884388 ATGTGTGAACCCTAC
1 ATGTGTGAACCCTAC
53884403 -T-TGTGAACC
1 ATGTGTGAACC
53884412 TGTATGTAGG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
13 8 0.25
14 1 0.03
15 23 0.72
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (15 bp):
ATGTGTGAACCCTAC
Found at i:53890131 original size:24 final size:24
Alignment explanation
Indices: 53890101--53890197 Score: 158
Period size: 24 Copynumber: 4.0 Consensus size: 24
53890091 GGTAAGACTT
*
53890101 TTTCCACAGCTCCTCTCTTCACCT
1 TTTCCACAGCTCCTCTCTTCACCC
* * *
53890125 TTTCCACTGTTCCTCTCTGCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
53890149 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
53890173 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
53890197 T
1 T
53890198 ATCGATTGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.11, C:0.47, G:0.05, T:0.36
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:53891006 original size:8 final size:8
Alignment explanation
Indices: 53890985--53891017 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
53890975 AAAAGATTAG
53890985 TGTTGTTCC
1 TGTTGTT-C
53890994 TGTTGTTC
1 TGTTGTTC
53891002 TGTTGTTC
1 TGTTGTTC
53891010 TGTTGTTC
1 TGTTGTTC
53891018 CTGGTAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.00, C:0.15, G:0.24, T:0.61
Consensus pattern (8 bp):
TGTTGTTC
Found at i:53894014 original size:27 final size:28
Alignment explanation
Indices: 53893949--53894018 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
53893939 GAAATTTTAG
*
53893949 ATTGTTGGATTTTGATATATGTTTTGAA
1 ATTGTTGGATATTGATATATGTTTTGAA
* *
53893977 TTTGTTAGATATTGAT-TATGTTTT-AA
1 ATTGTTGGATATTGATATATGTTTTGAA
*
53894003 CATTGCTGGATATTGA
1 -ATTGTTGGATATTGA
53894019 ATTAATTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
26 2 0.06
27 20 0.57
28 13 0.37
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (28 bp):
ATTGTTGGATATTGATATATGTTTTGAA
Found at i:53895244 original size:17 final size:18
Alignment explanation
Indices: 53895217--53895253 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
53895207 GCAATATATG
53895217 TAAAAACAATTTAA-AATA
1 TAAAAACAA-TTAATAATA
53895235 TAAAAA-AATTAATAATA
1 TAAAAACAATTAATAATA
53895252 TA
1 TA
53895254 TATTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 8 0.44
18 6 0.33
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAACAATTAATAATA
Found at i:53903118 original size:80 final size:81
Alignment explanation
Indices: 53902971--53903134 Score: 303
Period size: 80 Copynumber: 2.0 Consensus size: 81
53902961 AATAAATGGA
*
53902971 TATAGTCTTTGAAAACGCGTTCTAATATTCCCTTTTTTATACCATGTTGTAAAACATTACGTCGA
1 TATAGTCTTTGAAAACGCATTCTAATATTCCCTTTTTTATACCATGTTGTAAAACATTACGTCGA
53903036 AAGAAAACTTACTTAT
66 AAGAAAACTTACTTAT
*
53903052 TATAGTCTTTGAAAACGCATTCTAATATT-CCTTTTTTATACCATGTTGTAAAACATTACGTTGA
1 TATAGTCTTTGAAAACGCATTCTAATATTCCCTTTTTTATACCATGTTGTAAAACATTACGTCGA
53903116 AAGAAAACTTACTTAT
66 AAGAAAACTTACTTAT
53903132 TAT
1 TAT
53903135 TTGTAAAACA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 53 0.65
81 28 0.35
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (81 bp):
TATAGTCTTTGAAAACGCATTCTAATATTCCCTTTTTTATACCATGTTGTAAAACATTACGTCGA
AAGAAAACTTACTTAT
Found at i:53903780 original size:48 final size:47
Alignment explanation
Indices: 53903716--53903806 Score: 146
Period size: 48 Copynumber: 1.9 Consensus size: 47
53903706 AACACATTAT
* *
53903716 TTGTGGACAAGTCACCACATAAATGCCGATAAATGACCACATAACACA
1 TTGTGGACAAGCCACCACATAAATGCCGAT-AACGACCACATAACACA
*
53903764 TTGTGGACAAGCCACCACATAATTGCCGATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAAATGCCGATAACGACCACATAA
53903807 TCGCAGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 12 0.30
48 28 0.70
ACGTcount: A:0.40, C:0.26, G:0.15, T:0.19
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAAATGCCGATAACGACCACATAACACA
Found at i:53903802 original size:21 final size:21
Alignment explanation
Indices: 53903777--53903816 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
53903767 TGGACAAGCC
* *
53903777 ACCACATAATTGCCGATAACG
1 ACCACATAATCGCAGATAACG
53903798 ACCACATAATCGCAGATAA
1 ACCACATAATCGCAGATAA
53903817 ACTGCAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.28, G:0.12, T:0.17
Consensus pattern (21 bp):
ACCACATAATCGCAGATAACG
Found at i:53903986 original size:7 final size:7
Alignment explanation
Indices: 53903974--53904023 Score: 100
Period size: 7 Copynumber: 7.1 Consensus size: 7
53903964 GTAAACATGC
53903974 TCACATA
1 TCACATA
53903981 TCACATA
1 TCACATA
53903988 TCACATA
1 TCACATA
53903995 TCACATA
1 TCACATA
53904002 TCACATA
1 TCACATA
53904009 TCACATA
1 TCACATA
53904016 TCACATA
1 TCACATA
53904023 T
1 T
53904024 TATTCACTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (7 bp):
TCACATA
Found at i:53924539 original size:16 final size:16
Alignment explanation
Indices: 53924516--53924555 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
53924506 CGTTTGGTTC
53924516 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
53924532 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
53924548 GCTGTAAT
1 GCTGTAAT
53924556 AGTAACTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:53924587 original size:45 final size:44
Alignment explanation
Indices: 53924537--53924629 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
53924527 ATAGAGGTGT
*
53924537 AATGGAATAGAGCTGTAATAGTAACTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ACTC-ATGTGTTTGGTTGAATGG
* * *
53924582 AATGGAATAGAACTGTAATGGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTACTCATGTGTTTGGTTGAATGG
53924626 AATG
1 AATG
53924630 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.51
45 20 0.47
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTACTCATGTGTTTGGTTGAATGG
Found at i:53927719 original size:13 final size:13
Alignment explanation
Indices: 53927701--53927730 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
53927691 TGAAGGGGTT
*
53927701 AACAAGGAAATCA
1 AACAAGAAAATCA
53927714 AACAAGAAAATCA
1 AACAAGAAAATCA
53927727 AACA
1 AACA
53927731 TGCAATACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.17, G:0.10, T:0.07
Consensus pattern (13 bp):
AACAAGAAAATCA
Found at i:53937314 original size:61 final size:60
Alignment explanation
Indices: 53937197--53937383 Score: 168
Period size: 60 Copynumber: 3.0 Consensus size: 60
53937187 ACCTAATAAT
* *
53937197 AAATTTAGCCCTCCAATATTTAC-ACATTGTATCAATTT-GATCCTCAA-TCTAAAAATTCAACA
1 AAATTTAGCCCT-CAATATTTACAAAATT-TATCAATTTAG-TTCT-AATTCTAAAAATTCAA-A
* *
53937259 AAATTTAGCCCTCAATATTTACAAAATTTTTC-ATTTAGTTCTAATTCTAATAAATTCAAT
1 AAATTTAGCCCTCAATATTTACAAAATTTATCAATTTAGTTCTAATTCTAA-AAATTCAAA
* * * * *
53937319 AAATTTAAG-CCTGAACATTTACAAAATTTGTCGATATTTAATTCTAATTCTAAAATTTTCAAA
1 AAATTT-AGCCCTCAATATTTACAAAATTTATC-A-ATTTAGTTCTAATTCTAAAA-ATTCAAA
53937382 AA
1 AA
53937384 TGAAAAACAT
Statistics
Matches: 106, Mismatches: 10, Indels: 17
0.80 0.08 0.13
Matches are distributed among these distances:
59 2 0.02
60 38 0.36
61 24 0.23
62 18 0.17
63 24 0.23
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (60 bp):
AAATTTAGCCCTCAATATTTACAAAATTTATCAATTTAGTTCTAATTCTAAAAATTCAAA
Found at i:53937519 original size:19 final size:18
Alignment explanation
Indices: 53937482--53937520 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
53937472 AATATGTTTT
53937482 AAAAAATAAAAAATACAA
1 AAAAAATAAAAAATACAA
* *
53937500 AAAAAATCAAATAATTCAA
1 AAAAAAT-AAAAAATACAA
53937519 AA
1 AA
53937521 CGAAATGGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAAAATAAAAAATACAA
Found at i:53940496 original size:12 final size:12
Alignment explanation
Indices: 53940480--53940508 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
53940470 CTTTTTGAAG
53940480 GTTTTTT-TTTT
1 GTTTTTTGTTTT
53940491 GTTTTTTGTTTT
1 GTTTTTTGTTTT
53940503 GTTTTT
1 GTTTTT
53940509 GAAGAAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (12 bp):
GTTTTTTGTTTT
Found at i:53953084 original size:44 final size:43
Alignment explanation
Indices: 53952995--53953613 Score: 485
Period size: 44 Copynumber: 14.1 Consensus size: 43
53952985 AAAATAGCAA
* * * * *
53952995 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-GAACAG
1 ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGATG--CAG
* * *
53953039 ATCCTGTCTTCCTATATTGGTAACGAAGTGGATCGAAGATGCAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAGATGCAG
* * * *
53953083 ATCTTGTCTTCCCATACTGGTGGCGAAGTCGATCGAAGAAAGCAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAG-ATGCAG
* ** * * * *
53953128 ATCTTATCCACATGTATTGGTGTGAAGTAGATCGAAGATAACAG
1 ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGAT-GCAG
* * *
53953172 ATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAT
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAGATGCAG
* * * *
53953216 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAG-ATGCAG
* * * * *
53953261 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGAT-GCAG
* *
53953305 ATCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA--CTAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAGATGC-AG
* * * *
53953347 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGAAA
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAG-ATGCAG
* * *
53953392 ATCTTGTCTTCATGTATTGGCGCGAAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGAT-GCAG
* * *
53953436 ATCCTGTCTTCCTATATTGGTAG-GAAATGGATCGAAGATGCAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAGATGCAG
* * * *
53953479 ATCATGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAG-ATGCAG
* * * * * * *
53953524 ATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAACAA
1 ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGAT-GCAG
* * * * *
53953568 ATCCTGTCTTCCTATATTAGTAG-GAAGTGGATCAAAGAAGCAG
1 ATCTTGTCTTCCTATATTGGT-GCGAAGTAGATCGAAGATGCAG
53953611 ATC
1 ATC
53953614 GAAGACACTA
Statistics
Matches: 451, Mismatches: 105, Indels: 39
0.76 0.18 0.07
Matches are distributed among these distances:
41 1 0.00
42 22 0.05
43 45 0.10
44 275 0.61
45 107 0.24
46 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
ATCTTGTCTTCCTATATTGGTGCGAAGTAGATCGAAGATGCAG
Found at i:53953233 original size:133 final size:132
Alignment explanation
Indices: 53952990--53953613 Score: 973
Period size: 133 Copynumber: 4.7 Consensus size: 132
53952980 GCTAAAAAAT
* * *
53952990 AGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAGAACAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
* *
53953055 TTGGTAACGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTCGATCGAA
66 TTGGT-AGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
53953120 GAA
130 GAA
* ** *
53953123 AGCAGATCTTATCCACATGTATTGGTGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
*
53953188 TTGGTAGCGAAGTGGATCGAAGATGCATATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
53953253 GAA
130 GAA
* * * *
53953256 AGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCATGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
*
53953321 TTGGTAGGAAGTGGATCGAAGA--CTAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
66 TTGGTAGGAAGTGGATCGAAGATGC-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
53953384 GAA
130 GAA
* * * *
53953387 AGAAAATCTTGTCTTCATGTATTGGCGCGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
* *
53953452 TTGGTAGGAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
66 TTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
53953517 AA
131 AA
* *
53953519 AGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAACAAATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
* * *
53953584 TTAGTAGGAAGTGGATCAAAGAAGCAGATC
66 TTGGTAGGAAGTGGATCGAAGATGCAGATC
53953614 GAAGACACTA
Statistics
Matches: 449, Mismatches: 38, Indels: 9
0.91 0.08 0.02
Matches are distributed among these distances:
130 1 0.00
131 121 0.27
132 141 0.31
133 186 0.41
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (132 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
TTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
AA
Found at i:53953419 original size:175 final size:176
Alignment explanation
Indices: 53953151--53953534 Score: 445
Period size: 175 Copynumber: 2.2 Consensus size: 176
53953141 GTATTGGTGT
* * * * * * *
53953151 GAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAT
1 GAAGTAGATCGAAGA-AGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAAGAAA
* * * * *
53953216 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG
65 ATCTTGTCTTCACATACTGGTCGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTGG
* * * *
53953281 -CGTGAAGTAGATCAAAGATAGCAGATCATGTCTTCCTATATTGGTAG-
130 TAG-GAAATAGATCAAAGAT-GCAGATCATGTCTTCCCATACTGGTAGC
* *
53953328 GAAGTGGATCGAAG-A-CTAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGAA
1 GAAGTAGATCGAAGAAGC-AGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAG-AAGAA
** * * *
53953391 AATCTTGTCTTCATGTATTGG-CGCGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
64 AATCTTGTCTTCACATACTGGTCGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTG
* * *
53953455 GTAGGAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGC
129 GTAGGAAATAGATCAAAGATGCAGATCATGTCTTCCCATACTGGTAGC
53953503 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
1 GAAGTAGATCGAAG-AAGCAGATCTTGTCTTC
53953535 ATGTATTAGC
Statistics
Matches: 174, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
174 25 0.14
175 101 0.58
176 20 0.11
177 27 0.16
178 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (176 bp):
GAAGTAGATCGAAGAAGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAAGAAAA
TCTTGTCTTCACATACTGGTCGCGAAGTAGATCGAAGAAAGCAGATCCTGTCTTCATATATTGGT
AGGAAATAGATCAAAGATGCAGATCATGTCTTCCCATACTGGTAGC
Found at i:53953579 original size:263 final size:264
Alignment explanation
Indices: 53952990--53953605 Score: 975
Period size: 263 Copynumber: 2.3 Consensus size: 264
53952980 GCTAAAAAAT
* *
53952990 AGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAGAACAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGATCCTGTCTTCCTATA
* *
53953055 TTGGTAACGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTCGATCGAA
66 TTGGT-AGGAAGTGGATCGAAGAT-CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
* * * *
53953120 GAAAGCAGATCTTATCCACATGTATTGGTGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCT
129 GAAAGAAAATCTTATCCACATGTATTGGCGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCT
* * *
53953185 ATATTGGTAGCGAAGTGGATCGAAGATGCATATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
194 ATATTGGTAGCGAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGCGAAGTAGATC
53953250 GAAGAA
259 GAAGAA
* * *
53953256 AGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCATGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGATCCTGTCTTCCTATA
*
53953321 TTGGTAGGAAGTGGATCGAAGA-CTAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAG
66 TTGGTAGGAAGTGGATCGAAGATC-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
* ** *
53953385 AAAGAAAATCTTGTCTTCATGTATTGGCGCGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTA
130 AAAGAAAATCTTATCCACATGTATTGGCGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTA
53953450 TATTGGTAG-GAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGCGAAGTAGATCG
195 TATTGGTAGCGAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGCGAAGTAGATCG
53953514 AAGAA
260 AAGAA
* * *
53953519 AGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAACAAATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGATCCTGTCTTCCTATA
* *
53953584 TTAGTAGGAAGTGGATCAAAGA
66 TTGGTAGGAAGTGGATCGAAGA
53953606 AGCAGATCGA
Statistics
Matches: 322, Mismatches: 27, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
263 137 0.43
264 104 0.32
265 16 0.05
266 65 0.20
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (264 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGATCCTGTCTTCCTATA
TTGGTAGGAAGTGGATCGAAGATCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
AAGAAAATCTTATCCACATGTATTGGCGCGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
ATTGGTAGCGAAATGGATCGAAGATGCAGATCATGTCTTCCCATACTGGTGGCGAAGTAGATCGA
AGAA
Found at i:53953756 original size:88 final size:88
Alignment explanation
Indices: 53953604--53953972 Score: 549
Period size: 88 Copynumber: 4.2 Consensus size: 88
53953594 GTGGATCAAA
* * *
53953604 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATTGTAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGA
* * *
53953669 TCTTACCTTCCTACACCGACAGT
66 TCTTGCCTTCCTGCACCGACAGC
* * *
53953692 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGTAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGA
*
53953757 TTTTGCCTTCCTGCACCGACAGC
66 TCTTGCCTTCCTGCACCGACAGC
* * * * * * *
53953780 GAAGTAGATTGAAGACACCAACCTTGCCTCCCTAGATTGTAGCGGAGCAGGTTAAAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGA
53953845 TCTTGCCTTCCTGCACCGACAGC
66 TCTTGCCTTCCTGCACCGACAGC
* * *
53953868 GAAGCAGATCAAAGACACTAGCCTTGCCTCCCTGGGTTGCAACAGAGCAGGTTAAAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGA
*
53953933 TCTTGTCTTCCTGCACCGACAGC
66 TCTTGCCTTCCTGCACCGACAGC
53953956 GAAGCAGATCGAAGACA
1 GAAGCAGATCGAAGACA
53953973 TCAGTCTTAT
Statistics
Matches: 254, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 254 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (88 bp):
GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAGCAGGTTAAAAATAGCAGA
TCTTGCCTTCCTGCACCGACAGC
Found at i:53953851 original size:44 final size:43
Alignment explanation
Indices: 53953714--53953857 Score: 101
Period size: 44 Copynumber: 3.3 Consensus size: 43
53953704 AGACACCAGC
* *
53953714 CTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGTAGAT
1 CTTGCCTCCCT-GATTGTAGCGGAGCAGGTTAAAAATAGCAGAT
* * ** * * * * * * * * *
53953758 TTTGCCTTCCTGCACCGACAGCGAAGTAGATTGAAGACACCA-AC
1 CTTGCCTCCCTG-ATTG-TAGCGGAGCAGGTTAAAAATAGCAGAT
53953802 CTTGCCTCCCTAGATTGTAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCT-GATTGTAGCGGAGCAGGTTAAAAATAGCAGAT
*
53953846 CTTGCCTTCCTG
1 CTTGCCTCCCTG
53953858 CACCGACAGC
Statistics
Matches: 67, Mismatches: 29, Indels: 9
0.64 0.28 0.09
Matches are distributed among these distances:
43 18 0.27
44 33 0.49
45 16 0.24
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (43 bp):
CTTGCCTCCCTGATTGTAGCGGAGCAGGTTAAAAATAGCAGAT
Found at i:53954289 original size:44 final size:41
Alignment explanation
Indices: 53954241--53954396 Score: 129
Period size: 44 Copynumber: 3.7 Consensus size: 41
53954231 CCAATAATCC
*
53954241 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
1 TATCTCCTTGAAGTTGCAGTGGAGCAGA-TAAAATC-CAG-TCT
* *** *
53954285 TATCT-CTCTGAAGTTGCAG-AGAGCAGATCGCATCTAGTCT
1 TATCTCCT-TGAAGTTGCAGTGGAGCAGATAAAATCCAGTCT
* *
53954325 TATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCTTGAAGTTGCAGTGGAGCAGA-TAA--AATCCAGTCT
* *
53954369 TATCCTCC-TGAAATTGCAGTGGGGCAGA
1 TAT-CTCCTTGAAGTTGCAGTGGAGCAGA
53954397 CCCAAGAAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
40 19 0.21
41 11 0.12
42 5 0.05
43 8 0.09
44 44 0.48
45 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (41 bp):
TATCTCCTTGAAGTTGCAGTGGAGCAGATAAAATCCAGTCT
Found at i:53954420 original size:44 final size:44
Alignment explanation
Indices: 53954328--53954437 Score: 105
Period size: 45 Copynumber: 2.5 Consensus size: 44
53954318 CTAGTCTTAT
* * * * *
53954328 CTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
1 CTCC-TGAAATTGCAGTGGAGCAGACCAAGAAAGCAAATCCTATC
* *
53954373 CTCCTGAAATTGCAGTGGGGCAGACCCAAGAAATCAAATCCTA-C
1 CTCCTGAAATTGCAGTGGAGCAGA-CCAAGAAAGCAAATCCTATC
* *
53954417 CTCCCTGACATTACAGTGGAG
1 CT-CCTGAAATTGCAGTGGAG
53954438 TAGATTGAAG
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 21 0.40
45 32 0.60
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (44 bp):
CTCCTGAAATTGCAGTGGAGCAGACCAAGAAAGCAAATCCTATC
Found at i:53957321 original size:22 final size:23
Alignment explanation
Indices: 53957276--53957324 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
53957266 TTAATAATAA
*
53957276 TTTTCATTTTTAATGTATATTTT
1 TTTTCATTTTTAATGTATAATTT
* *
53957299 TTTTCATTTTTCAT-TCTAATTT
1 TTTTCATTTTTAATGTATAATTT
53957321 TTTT
1 TTTT
53957325 AGCATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTCATTTTTAATGTATAATTT
Found at i:53961235 original size:18 final size:18
Alignment explanation
Indices: 53961202--53961241 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
53961192 TTCGATTTCA
*
53961202 ATTTTGATTTATATTTAG
1 ATTTTGATTTAGATTTAG
* *
53961220 ATTTTGATTTGGATTTGG
1 ATTTTGATTTAGATTTAG
53961238 ATTT
1 ATTT
53961242 CTATTTAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (18 bp):
ATTTTGATTTAGATTTAG
Found at i:53961705 original size:15 final size:15
Alignment explanation
Indices: 53961681--53961730 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
53961671 GAAGAAGAAA
*
53961681 TGTCTAGTAGTGATG
1 TGTCTGGTAGTGATG
53961696 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
** **
53961711 CATCTGAAAGTGATG
1 TGTCTGGTAGTGATG
53961726 TGTCT
1 TGTCT
53961731 AATAGGATAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.20, C:0.10, G:0.32, T:0.38
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:53963494 original size:25 final size:26
Alignment explanation
Indices: 53963443--53963502 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
53963433 TGTATGACTG
**
53963443 TTTTTAATATACATGTTGTTGACTAT
1 TTTTTAATATACATGCAGTTGACTAT
* *
53963469 TTTTTAATATGCATGCAG-TGAGTAT
1 TTTTTAATATACATGCAGTTGACTAT
53963494 TTTTTAATA
1 TTTTTAATA
53963503 ATATGCATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (26 bp):
TTTTTAATATACATGCAGTTGACTAT
Found at i:53963516 original size:28 final size:28
Alignment explanation
Indices: 53963473--53963526 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
53963463 GACTATTTTT
53963473 TAATATGCATGCAGTGAGTATTTTTTAA
1 TAATATGCATGCAGTGAGTATTTTTTAA
* * *
53963501 TAATATGCATGTAGTGATTGTTTTTT
1 TAATATGCATGCAGTGAGTATTTTTT
53963527 TAGGTGTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.48
Consensus pattern (28 bp):
TAATATGCATGCAGTGAGTATTTTTTAA
Found at i:53964224 original size:21 final size:21
Alignment explanation
Indices: 53964200--53964251 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
53964190 CAAGTGGTTG
53964200 CCCCAACTCAGCAACA-AGCTA
1 CCCCAACTCAGCAACAGAG-TA
* *
53964221 CCCCAAATCAGCAAGAGAGTA
1 CCCCAACTCAGCAACAGAGTA
53964242 CCCCAACTCA
1 CCCCAACTCA
53964252 ATAGGCTGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.38, C:0.40, G:0.12, T:0.10
Consensus pattern (21 bp):
CCCCAACTCAGCAACAGAGTA
Found at i:53976149 original size:10 final size:10
Alignment explanation
Indices: 53976120--53976150 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
53976110 TGCCAAAAGA
*
53976120 AGAACAACAA
1 AGAACAACAG
53976130 AGAACAACAG
1 AGAACAACAG
53976140 AGAACAACAG
1 AGAACAACAG
53976150 A
1 A
53976151 AAGAACGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.65, C:0.19, G:0.16, T:0.00
Consensus pattern (10 bp):
AGAACAACAG
Found at i:53977813 original size:19 final size:20
Alignment explanation
Indices: 53977775--53977813 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
53977765 TATGGTTAAA
*
53977775 TATATTTCTTTTCATATAATG
1 TATATTTCTATT-ATATAATG
53977796 TATATTTCTATT-TATAAT
1 TATATTTCTATTATATAAT
53977814 TTCTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (20 bp):
TATATTTCTATTATATAATG
Found at i:53979192 original size:23 final size:23
Alignment explanation
Indices: 53979160--53979203 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
53979150 TTCTTTATAA
*
53979160 ATGATGAAATTATAAATTAATAT
1 ATGATAAAATTATAAATTAATAT
*
53979183 ATGATAAAATTATAATTTAAT
1 ATGATAAAATTATAAATTAAT
53979204 TTTTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
ATGATAAAATTATAAATTAATAT
Found at i:53981613 original size:9 final size:9
Alignment explanation
Indices: 53981599--53981645 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
53981589 TTTTAAAATA
53981599 TATATTTTT
1 TATATTTTT
53981608 TATATTTTT
1 TATATTTTT
*
53981617 TAATAAATTTT
1 T-AT-ATTTTT
53981628 TATATTTTT
1 TATATTTTT
*
53981637 TGTATTTTT
1 TATATTTTT
53981646 ATAAAATCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 23 0.70
10 4 0.12
11 6 0.18
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (9 bp):
TATATTTTT
Found at i:53984810 original size:21 final size:21
Alignment explanation
Indices: 53984786--53984832 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
53984776 TCGAAAATGA
*
53984786 TTTTTAAAAAATGAATTTATT
1 TTTTTAAAAAATGAATATATT
* * *
53984807 TTTTAAAAAAATTAATATCTT
1 TTTTTAAAAAATGAATATATT
53984828 TTTTT
1 TTTTT
53984833 GTGTTTGTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTTAAAAAATGAATATATT
Found at i:53985087 original size:11 final size:11
Alignment explanation
Indices: 53985071--53985106 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
53985061 AACTAATTTT
53985071 TTAATTTTTAA
1 TTAATTTTTAA
53985082 TTAATTTTTAA
1 TTAATTTTTAA
*
53985093 -TGATTTTTAA
1 TTAATTTTTAA
53985103 TTAA
1 TTAA
53985107 ACTAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:53986933 original size:113 final size:110
Alignment explanation
Indices: 53986745--53987077 Score: 465
Period size: 108 Copynumber: 3.0 Consensus size: 110
53986735 TGAATTAAGA
* * * *
53986745 TTTAAGAGAATATTTGGCTATTTGGTCAAATGA-AAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAA-AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* * *
53986809 TTTCTCAAATTTCCAAACACAAAATATTGTCTTATTTTGAAAAAATT
65 TTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTG-AAAAATT
* * * *
53986856 TTTAAAAGGGATATTTGACTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGACACA
1 TTT-AAA-GGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACG
*
53986921 TTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTG--AAATT
64 TTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAATT
* *
53986966 TTTTAAGGATATTTGGCTATTTGGTCGAACGAGAAATATCGAAACCCAGCACATTAGGGCACGTT
1 TTTAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTT
* *
53987031 TTTTCGAATTTCCAAACGCAAAATATTGCCTTATTTAGAAAAATT
66 TTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAATT
53987076 TT
1 TT
53987078 CCTCTTTGAA
Statistics
Matches: 196, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
108 89 0.45
109 2 0.01
110 15 0.08
111 4 0.02
112 23 0.12
113 63 0.32
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (110 bp):
TTTAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTT
TTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAATT
Found at i:53987174 original size:21 final size:20
Alignment explanation
Indices: 53987136--53987174 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
53987126 TAATATGAAT
* *
53987136 AAAAATAAAATGAGCAAAAA
1 AAAAATAAAAAGAACAAAAA
53987156 AAAAATGAAAAAGAACAAA
1 AAAAAT-AAAAAGAACAAA
53987175 TCAATCATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.77, C:0.05, G:0.10, T:0.08
Consensus pattern (20 bp):
AAAAATAAAAAGAACAAAAA
Found at i:53987412 original size:36 final size:35
Alignment explanation
Indices: 53987349--53987417 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
53987339 AATATATATG
53987349 TATGTATATACATAAAATTATGAAAATATGAAAAAA
1 TATGTATATACATAAAATTATGAAAATAT-AAAAAA
* * *
53987385 TATGTATATATATTAAAGTTAT-TAAATATAAAA
1 TATGTATATACA-TAAAATTATGAAAATATAAAA
53987418 GTTTATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 4 0.14
36 17 0.59
37 8 0.28
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.36
Consensus pattern (35 bp):
TATGTATATACATAAAATTATGAAAATATAAAAAA
Found at i:53989180 original size:44 final size:43
Alignment explanation
Indices: 53989131--53989451 Score: 157
Period size: 44 Copynumber: 7.3 Consensus size: 43
53989121 TACTACCTTG
53989131 GGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTA
1 GGAAGATAAGATTCA-CATCTTTGATCTGCTCCACTACTGCTTA
* * * * * *
53989175 AGAAGA-CAGAATCTGCA-ATC-TTCAACTTACTCCACTAATGCTTA
1 GGAAGATAAG-AT-T-CACATCTTTGATC-TGCTCCACTACTGCTTA
* * ** *
53989219 GGGAGATAGGATT-A-ATGGCTTAAATCTGCTTCTCCACTA-T-CTTG
1 GGAAGATAAGATTCACAT--CTTTGATCTG---CTCCACTACTGCTTA
*
53989263 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
1 GGAAGATAAGATTCA-CATCTTTGATCTGCTCCACTACTGCTTA
* * * * *
53989307 GGGAGA-CAGAACCTTCA-ATC-TTCAGCCTACTCCACTACTGCTTA
1 GGAAGATAAG-A--TTCACATCTTTGA-TCTGCTCCACTACTGCTTA
* ** *
53989351 GGAAGATAAGACT-A-ATGGCTTAAATCTGCTTCTCCACTA-T-CTTG
1 GGAAGATAAGATTCACAT--CTTTGATCTG---CTCCACTACTGCTTA
53989395 GGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTA
1 GGAAGATAAGATTCA-CATCTTTGATCTGCTCCACTACTGCTTA
*
53989439 GGGAGATAAGATT
1 GGAAGATAAGATT
53989452 TGCTATCTTT
Statistics
Matches: 206, Mismatches: 39, Indels: 64
0.67 0.13 0.21
Matches are distributed among these distances:
41 6 0.03
42 17 0.08
43 18 0.09
44 115 0.56
45 24 0.12
46 22 0.11
47 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (43 bp):
GGAAGATAAGATTCACATCTTTGATCTGCTCCACTACTGCTTA
Found at i:53989439 original size:132 final size:132
Alignment explanation
Indices: 53989122--53989444 Score: 538
Period size: 132 Copynumber: 2.4 Consensus size: 132
53989112 TTACTTCCCT
* * * *
53989122 ACTACCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAAGAAGACAGAAT
1 ACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAAC
* * * *
53989187 CTGCAATCTTCAACTTACTCCACTAATGCTTAGGGAGATAGGATTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCTACTCCACTAATGCTTAGGAAGATAAGACTAATGGCTTAAATCTGCTTCT
53989252 CC
131 CC
*
53989254 ACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAAC
1 ACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAAC
* * *
53989319 CTTCAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAAGACTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCTACTCCACTAATGCTTAGGAAGATAAGACTAATGGCTTAAATCTGCTTCT
53989384 CC
131 CC
53989386 ACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
1 ACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
53989445 TAAGATTTGC
Statistics
Matches: 178, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 178 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (132 bp):
ACTATCTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAAC
CTGCAATCTTCAACCTACTCCACTAATGCTTAGGAAGATAAGACTAATGGCTTAAATCTGCTTCT
CC
Found at i:53989642 original size:89 final size:89
Alignment explanation
Indices: 53989483--53991432 Score: 2700
Period size: 89 Copynumber: 21.9 Consensus size: 89
53989473 CTGTAAACTA
* *
53989483 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
53989548 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * ** *
53989572 TGGTGTCTTCGATCTACTTCGCTGTCAGTACAGGAAGGCAATATCTACTATCTTCAGTCTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53989637 ACTGTCAGTATAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
53989661 TGGTGTCTTCGATCTGCTTCACCGTTAGTACAGAAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53989726 ACTGTCAGTACAGTAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
53989750 TGGTGTCCTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGTTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53989815 AG-TATCAGTACAGGAAGGCAAGGT
66 -GCTGTCAGTACAGGAAGGCAAGGC
** * *
53989839 TGGTGTCTTCGATCTATTTCACCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53989904 GCTGTCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
53989928 TGGTGTCTTCGATCTACTTCGCTGTCAGTACATGAAGGCAAGATTTGTTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53989993 GTTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * ** *
53990017 TGGTGTCTTCGATCTGCTTCGCCGTCAGTATAGGAAGGCAATATCTACTATCTTCAGTCTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53990082 ACTGTCAGTATAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
53990106 TGGTGTCTTCGATCTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTCAGTCTACTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53990171 ACTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
53990195 TGGTGTCCTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTACTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53990260 GCTATCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
53990284 TAGTGTCTTCGATCTGCTTCGTCGTCAGTACAGGAAGGCAACATCTGTTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53990349 GCTGTCAGTATAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* ** * * * *
53990373 TTGTGTCTTCGATCTGCTTCATCGTTAGTACAGGAAGGCAAGATCTGTTATCTTCAATCTACTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53990438 GCTGTCAGTACAGGAAGGCAAGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
53990462 TGGTGTCTTCGATCTGGTTTGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTGTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
53990527 GTTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
53990551 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAATATCTGCTATCTTCAGTTTGCCCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
53990616 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
** * * * * *
53990640 TACTGTCTTCGAACTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53990705 ACTATCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
53990729 TGGTGTCCTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* * *
53990794 GCTATCAGTACAGGAAGGCATGGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
53990818 TGGTGTCTTCGATCTGCTTCGCCGTTAGTACAGGAATGCAAGATTTGTTATCTTCAGTTTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
53990883 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
53990907 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTATTATTTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* * *
53990972 ACTGTCAGTACAGGAAGGCAAAGT
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
53990996 TGGTGTCTTCAATCTGCTTCACCGTCAGTATACGAAGGCAAGATCTGTTATCTTCAGCCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53991061 GCTGTCAATACAGGAAGGCAATGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * * *
53991085 TGGTGTCTTCGATTTGCTTCCCCGTCAATACAGGAAGGCAAGATCTGATATCTTTAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
53991150 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * *
53991174 TGGTGTCTTCGATCTACTTCGCCGTCAGTATAGGAAGGCAAGATCTGTTATCTTCAGTTTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53991239 GCTTTCAGTACAGGAAGACAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * *
53991263 TGGTGTTTTTGATCTGCTTCGCTGTTAGTACAGGAAGGCAAGATCTGTTATCTTCACTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
53991328 GCTGTCAATACAGGAAGGTAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * * * * *
53991352 TGGTGTCTTCGATCTGCTCCGCTGTCAGTACAAGAAGGCAAGGTCTG-TGTCTTC-GATCTGCTT
1 TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAG-TCTGCTC
*
53991415 CGCCGTCAGTACAGGAAG
65 CGCTGTCAGTACAGGAAG
53991433 AAAAAATCTA
Statistics
Matches: 1652, Mismatches: 206, Indels: 7
0.89 0.11 0.00
Matches are distributed among these distances:
88 29 0.02
89 1623 0.98
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
GCTGTCAGTACAGGAAGGCAAGGC
Found at i:53991450 original size:89 final size:90
Alignment explanation
Indices: 53989495--53991718 Score: 554
Period size: 89 Copynumber: 25.0 Consensus size: 90
53989485 GTGTCTTCGA
* * * * * *
53989495 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTC-AGTCTGCTCCGCTGTCAGTAC
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTAC
* * * *
53989559 AGGAAGGCAAG-GCTGGTGTCTTC-G
65 AGGAAGACAAGATCTGCTATCTTCAG
* * ** ** * ** * *
53989583 ATCTACTTCGCTGTCAGTACAGGAAGGCAATATCTACTATCTTC-AGTCTGCCCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
53989647 TAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * * * *
53989672 ATCTGCTTCACCGTTAGTACAGAAAGGCAAGATCTGCTATCTTC-AGTCTGCTCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * * *
53989736 CAGTAAGGCAAG-GCTGGTGTCCTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * *
53989761 ATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGTTATCTT-TAGTCTGC-TC-CAGTATCAG
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCG--TCAG
* * * *
53989823 TACAGGAAGGCAAGGT-TGGTGTCTTC-G
62 TACAGGAAGACAAGATCTGCTATCTTCAG
** * * * * * * *
53989850 ATCTATTTCACCGTCAGTACAGGAAGGCAAGATCTGTTATCTTC-AGTCTGCTTCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53989914 CAGGAAGGCAAGGT-TGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * **
53989939 ATCTACTTCGCTGTCAGTACATGAAGGCAAGATTTGTTATCTTC-AGTCTGCTCCGTTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53990003 CAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * ** ** * ** * *
53990028 ATCTGCTTCGCCGTCAGTATAGGAAGGCAATATCTACTATCTTC-AGTCTGCCCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
53990092 TAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * * *
53990117 ATCTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTTC-AGTCTAC-TCTACTGTCAGT
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTC-GCCGTCAGT
* * * * *
53990180 ACAGGAAGGCAAG-GCTGGTGTCCTC-G
63 ACAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * **
53990206 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTT-TAGTCTAC-TCTGCTATCAGT
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTC-GCCGTCAGT
* * *
53990269 ACAGGAAGGCAAGGT-TAG-TGTCTTC-G
63 ACAGGAAGACAAGATCT-GCTATCTTCAG
* ** * * * *
53990295 ATCTGCTTCG-TCGTCAGTACAGGAAGGCAACATCTGTTATCTTC-AGTCTGCTCCGCTGTCAGT
1 -TCTGCTCCGCT-GTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGT
* * * *
53990358 ATAGGAAGGCAAG-GCTTG-TGTCTTC-G
63 ACAGGAAGACAAGATC-TGCTATCTTCAG
* * * * * * * * *
53990384 ATCTGCTTC-ATCGTTAGTACAGGAAGGCAAGATCTGTTATCTTCAATCTAC-TCTGCTGTCAGT
1 -TCTGCTCCGCT-GTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTC-GCCGTCAGT
* * * *
53990447 ACAGGAAGGCAAGGT-TGGTGTCTTC-G
63 ACAGGAAGACAAGATCTGCTATCTTCAG
* ** * * * * * * **
53990473 ATCTGGTTTGCCGTCAGTACAGGAAGGCAAGATCTGTTATCTTC-AGTGTGCTCCGTTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53990537 CAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * ** * * * ** *
53990562 ATCTGCTTCGCCGTCAGTACAGGAAGGCAATATCTGCTATCTTC-AGTTTGCCCCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53990626 CAGGAAGGCAAG-GCTACTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * * * * **
53990651 AACTGCTTCACCGTCAGTACAGAAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCACTATCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
53990715 CAGGAAGGCAAG-GCTGGTGTCCTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * **
53990740 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTT-TAGTCTGCTCCGCTATCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * * *
53990804 CAGGAAGGCATGGT-TGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * * * *
53990829 ATCTGCTTCGCCGTTAGTACAGGAATGCAAGATTTGTTATCTTC-AGTTTGCTCCGCTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53990893 CAGGAAGGCAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
* * ** * * * * *
53990918 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTATTATTTTC-AGTCTGCTCCACTGTCAGTA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
* * * *
53990982 CAGGAAGGCAA-AGT-TGGTGTCTTCAA
64 CAGGAAGACAAGA-TCTGCTATCTTCAG
* * * * * * * * * * * *
53991008 TCTGCTTCACCGTCAGTATACGAAGGCAAGATCTGTTATCTTC-AGCCTGCTCCGCTGTCAATAC
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTAC
* * *
53991072 AGGAAGGC-A-ATGCTGGTGTCTTC-G
65 AGGAAGACAAGAT-CTGCTATCTTCAG
* * * * * * * *
53991096 ATTTGCTTCC-CCGTCAATACAGGAAGGCAAGATCTGATATCTT-TAGTCTGCTTCGCTGTCAGT
1 -TCTGC-TCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGT
* * * *
53991159 ACAGGAAGGCAAG-GCTGGTGTCTTC-G
63 ACAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * * **
53991185 ATCTACTTCGCCGTCAGTATAGGAAGGCAAGATCTGTTATCTTC-AGTTTGC-TCTGCTTTCAGT
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTC-GCCGTCAGT
* * * **
53991248 ACAGGAAGACAAG-GCTGGTGT-TTTTG
63 ACAGGAAGACAAGATCTGCTATCTTCAG
* * * * * * * *
53991274 ATCTGCTTCGCTGTTAGTACAGGAAGGCAAGATCTGTTATCTTC-ACTCTGCTCCGCTGTCAATA
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGA-TCTGCTTCGCCGTCAGTA
** * * *
53991338 CAGGAAGGTAAG-GCTGGTGTCTTC-G
64 CAGGAAGACAAGATCTGCTATCTTCAG
*
53991363 ATCTGCTCCGCTGTCAGTACAAGAAGGCAAGGTCT-GTGTCTTCGATCTGCTTCGCCGTCAGTAC
1 -TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTAC
* * ** *
53991427 AGGAAGAAAAAATCTATTTTCTTCAG
65 AGGAAGACAAGATCTGCTATCTTCAG
53991453 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGG-CTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
* **
53991517 GAAAGGTAAGATCTGCTATCTTCAG
66 GGAAGACAAGATCTGCTATCTTCAG
* * * * * * *
53991542 TCTTCTCTGCTGTTAGTACAGGAAGGTAAGG-CTAGTGTCTTCGATCTTCTTCGCCGTTAGTACA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
*
53991606 AGAAGACAAGATCTGCTATCTTCAG
66 GGAAGACAAGATCTGCTATCTTCAG
* * * * *
53991631 TCTGCTCCGTTGTCAGTAAAGGAAGGCAATGT-TGGTGTCTTCGATTTGCTTCACCGTCAGTACA
1 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
* **
53991695 GGAAGGCAAGATCTATTATCTTCA
66 GGAAGACAAGATCTGCTATCTTCA
53991719 CTAATCTGTT
Statistics
Matches: 1859, Mismatches: 225, Indels: 102
0.85 0.10 0.05
Matches are distributed among these distances:
87 3 0.00
88 46 0.02
89 1794 0.97
90 14 0.01
91 2 0.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (90 bp):
TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGTCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACA
GGAAGACAAGATCTGCTATCTTCAG
Found at i:53996954 original size:108 final size:109
Alignment explanation
Indices: 53996673--53996998 Score: 503
Period size: 108 Copynumber: 3.0 Consensus size: 109
53996663 TGGATTAAGA
*
53996673 TTTAAGAGAATATTTGGCTATTTGGTCAAACGA-AAAAATCGAAACCCAGCGCATTAGGGCACGT
1 TTTAAG-G-ATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* *
53996737 TTCCTCAAATTTCCAAACGCAAAATATTGTCTTATTTTGAAATTTT
64 TTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTT
* *
53996783 TTTCAAAGGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACA
1 TTT--AA-GGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACG
*
53996848 TTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATTTTGAAA-TTT
63 TTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTT
* *
53996894 TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAATATCAAAACCCAGCACATTAGGGCACGTTT
1 TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTT
* *
53996959 TCTCGAATTTCCAAACGCAAAATATTGCCTTATTTAGAAA
66 TCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
53996999 AATTTTCCTT
Statistics
Matches: 199, Mismatches: 13, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
108 93 0.47
109 2 0.01
110 3 0.02
111 29 0.15
112 71 0.36
113 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (109 bp):
TTTAAGGATATTTGGCTATTTGGTCAAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTT
TCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTT
Found at i:53997176 original size:4 final size:4
Alignment explanation
Indices: 53997167--53997192 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
53997157 TTATGGACAT
53997167 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
53997193 GGACAACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:53997349 original size:36 final size:35
Alignment explanation
Indices: 53997286--53997354 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
53997276 AATATATATG
53997286 TATGTATATACATAAAATTATGAAAATATGAAAAAA
1 TATGTATATACATAAAATTATGAAAATAT-AAAAAA
* * *
53997322 TATGTATATATATTAAAGTTAT-TAAATATAAAA
1 TATGTATATACA-TAAAATTATGAAAATATAAAA
53997355 GTTTATGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 4 0.14
36 17 0.59
37 8 0.28
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.36
Consensus pattern (35 bp):
TATGTATATACATAAAATTATGAAAATATAAAAAA
Found at i:53997625 original size:22 final size:22
Alignment explanation
Indices: 53997583--53997639 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
53997573 CATAAATATA
*
53997583 AAAAAAGAATTGATAATAAATG
1 AAAAAAGAATTGAAAATAAATG
* *
53997605 AAAAAAGTATT-AAAATGAAATT
1 AAAAAAGAATTGAAAAT-AAATG
53997627 AAAATAA-AATTGA
1 AAAA-AAGAATTGA
53997640 GAGCCCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 4 0.14
22 21 0.75
23 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.25
Consensus pattern (22 bp):
AAAAAAGAATTGAAAATAAATG
Found at i:53999826 original size:50 final size:50
Alignment explanation
Indices: 53999759--54000050 Score: 233
Period size: 50 Copynumber: 5.8 Consensus size: 50
53999749 TGCAATGTCG
* * * *
53999759 GGGAGACAAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
** * * * ** * * ** *
53999809 GGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTTCAATGTCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* * * *
53999859 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATCCCACTACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* * * * ** * * ** **
53999909 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTTTTTATTGCAATGTTA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* *
53999959 GGGAAACCAGATCCGCCGTCGTGGCTTCAATCTGTTCCAATACACCGCCA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
* ** * *
54000009 GGGAAACAAGATTCATCGTTGTGGCTTCAATCTATTCCACTA
1 GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTA
54000051 TAATGCCAAA
Statistics
Matches: 178, Mismatches: 64, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
50 178 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (50 bp):
GGGAAACAAGATCCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCA
Found at i:53999887 original size:100 final size:100
Alignment explanation
Indices: 53999744--54000041 Score: 425
Period size: 100 Copynumber: 3.0 Consensus size: 100
53999734 TTCAGTCTAC
* * * * * *
53999744 TTAACTGCAATGTCGGGGAGACAAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
** * * *
53999809 GGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
* * *
53999844 TTAATTTCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATCCCACTACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
53999909 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
* * * *
53999944 TTTATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTGGCTTCAATCTGTTCCAATACACCGCCA
1 TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
*
54000009 GGGAAACAAGATTCATCGTTGTGGCTTCAATCT
66 GGGAAACAAGATTCACCGTTGTGGCTTCAATCT
54000042 ATTCCACTAT
Statistics
Matches: 176, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (100 bp):
TTAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
GGGAAACAAGATTCACCGTTGTGGCTTCAATCTTT
Found at i:54001551 original size:6 final size:6
Alignment explanation
Indices: 54001528--54001562 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
54001518 AATCCTCTCA
*
54001528 TTTTCC TTTTCT TCTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT TTTT
54001563 TTTCCATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:54001563 original size:13 final size:12
Alignment explanation
Indices: 54001528--54001562 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
54001518 AATCCTCTCA
*
54001528 TTTTCCTTTTCT
1 TTTTCTTTTTCT
54001540 TCTTTCTTTTTCT
1 T-TTTCTTTTTCT
54001553 TTTTCTTTTT
1 TTTTCTTTTT
54001563 TTTCCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:54013567 original size:30 final size:30
Alignment explanation
Indices: 54013516--54013604 Score: 116
Period size: 25 Copynumber: 3.1 Consensus size: 30
54013506 ATTTCTTATG
* *
54013516 CCAATATCTCGATATCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
54013547 CCAATATTTGATACCCATATCTTTGAC-TT
1 CCAATATTTGATACCCATATCTTTGACTTT
54013576 ----TATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
54013602 CCA
1 CCA
54013605 TAAATATGGA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 23 0.44
26 2 0.04
29 2 0.04
30 18 0.35
31 7 0.13
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:54013571 original size:15 final size:15
Alignment explanation
Indices: 54013526--54013572 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
54013516 CCAATATCTC
54013526 GATATCCATATCTTT
1 GATATCCATATCTTT
* *
54013541 GACTTTCCA-ATATTT
1 GA-TATCCATATCTTT
*
54013556 GATACCCATATCTTT
1 GATATCCATATCTTT
54013571 GA
1 GA
54013573 CTTTATTTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
14 4 0.16
15 16 0.64
16 5 0.20
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (15 bp):
GATATCCATATCTTT
Found at i:54028449 original size:67 final size:63
Alignment explanation
Indices: 54028359--54028551 Score: 202
Period size: 67 Copynumber: 3.0 Consensus size: 63
54028349 TGTAATATAT
54028359 TTAATATTAAATTTAAATTAATATTTATCTTAATAGTATTTTATTAATTTAATATTAAAGTGATT
1 TTAATATTAAA-TTAAATTAATATTTATCTT-ATAGTATTTTATTAATTTAAT-TTAAAGTGATT
54028424 A
63 A
*
54028425 CTTAATATTAAATTAAATTAAATATTTATCTTATAGATATATTA-TAA--TAATTT-AA-TAGA-
1 -TTAATATTAAATTAAATT-AATATTTATCTTATAG-TATTTTATTAATTTAATTTAAAGT-GAT
54028484 T-
62 TA
* * *
54028485 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATCTTAAAGTAAT
1 TTAATATTAAATTAAAT-TAATATTTATCTT-AT-AGTATTTTATTAATTTAAT-TTAAAGTGAT
54028550 TA
62 TA
54028552 AGTTTAATTA
Statistics
Matches: 107, Mismatches: 5, Indels: 28
0.76 0.04 0.20
Matches are distributed among these distances:
59 28 0.26
60 8 0.07
61 7 0.07
62 4 0.04
63 6 0.06
64 6 0.06
65 3 0.03
66 16 0.15
67 29 0.27
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (63 bp):
TTAATATTAAATTAAATTAATATTTATCTTATAGTATTTTATTAATTTAATTTAAAGTGATTA
Found at i:54028482 original size:22 final size:21
Alignment explanation
Indices: 54028457--54028501 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
54028447 TATTTATCTT
*
54028457 ATAGATATATTATAATAATTTA
1 ATAGATATAATATAA-AATTTA
* *
54028479 ATAGATTTAATATTAAATTTA
1 ATAGATATAATATAAAATTTA
54028500 AT
1 AT
54028502 CTAATATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (21 bp):
ATAGATATAATATAAAATTTA
Found at i:54034088 original size:37 final size:35
Alignment explanation
Indices: 54034006--54034098 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 35
54033996 TTTAATAAAT
* *
54034006 TTAATATTAAATTAA-ATTAAATTCTTATCTTGATA
1 TTAATATT-AATTAATATTAAATTATTATCTTAATA
*
54034041 TTATTTTATTAATGTAATATTAAATTAATTATCTTAATA
1 TTA--ATATTAAT-TAATATTAAATT-ATTATCTTAATA
54034080 TTAATATTAATTTAATATT
1 TTAATATTAA-TTAATATT
54034099 TATCTTATAG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
35 3 0.06
36 3 0.06
37 20 0.42
38 9 0.19
39 13 0.27
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (35 bp):
TTAATATTAATTAATATTAAATTATTATCTTAATA
Found at i:54034141 original size:61 final size:58
Alignment explanation
Indices: 54034057--54034189 Score: 162
Period size: 61 Copynumber: 2.2 Consensus size: 58
54034047 TATTAATGTA
* * *
54034057 ATATTAAATTAAT-TATCTTAATATT-AATATTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATAGAT-TTAATATTAAAT-TTAATCTAATATTTATC-T-T-GATAAATATT
* *
54034118 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATT
1 ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
54034176 ATATTAATTTAATA
1 ATATTAATTTAATA
54034190 CTAAAGTGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
58 22 0.34
59 1 0.02
60 1 0.02
61 35 0.55
62 5 0.08
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (58 bp):
ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
Found at i:54034202 original size:58 final size:60
Alignment explanation
Indices: 54034057--54034215 Score: 148
Period size: 61 Copynumber: 2.6 Consensus size: 60
54034047 TATTAATGTA
* * * *
54034057 ATATTAAATTAATTATCTTAATATT-AATATTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAA-TAACTAAATATTAAAT-TTAATCTAATATTTATCTTATAGATAAATATT
* * * *
54034118 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATT
1 ATATTAATTTAATA-ACTAAATATTAAATTTAATCTAATATTTATCTTATAGATAAATATT
*
54034176 ATATTAATTTAAT-ACTAAAGTGATTAAGTTTAATCATAAT
1 ATATTAATTTAATAACTAAA-T-ATTAAATTTAATC-TAAT
54034216 TGAACTCTCT
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
56 4 0.05
57 1 0.01
58 33 0.40
59 5 0.06
60 3 0.04
61 34 0.41
62 3 0.04
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (60 bp):
ATATTAATTTAATAACTAAATATTAAATTTAATCTAATATTTATCTTATAGATAAATATT
Found at i:54035121 original size:10 final size:9
Alignment explanation
Indices: 54035106--54035144 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
54035096 ATATATTTGT
54035106 TTTATAATTA
1 TTTAT-ATTA
*
54035116 TTTATAATA
1 TTTATATTA
54035125 TTTATATTA
1 TTTATATTA
54035134 TGTTATATTA
1 T-TTATATTA
54035144 T
1 T
54035145 AAGTTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTATATTA
Found at i:54042634 original size:40 final size:40
Alignment explanation
Indices: 54042534--54042798 Score: 279
Period size: 40 Copynumber: 6.7 Consensus size: 40
54042524 GCTCCTCGTT
* * * *
54042534 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
54042574 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
54042613 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
54042653 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
* *
54042693 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
54042733 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
54042774 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
54042799 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 144 0.72
41 15 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:54042807 original size:41 final size:41
Alignment explanation
Indices: 54042730--54042807 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
54042720 TTTGTATCTC
* * *
54042730 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
54042771 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
54042808 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:54061006 original size:28 final size:30
Alignment explanation
Indices: 54060968--54061026 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
54060958 AGCTTTGGTC
*
54060968 TTTCTCCTTTTCTTTCCTTT-CTCTTTCTT
1 TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
* *
54060997 TTTC-CCTTTTGTTTCATTTGTTCTTTCTT
1 TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
54061026 T
1 T
54061027 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.02, C:0.25, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTCTCCTTTTCTTTCATTTGCTCTTTCTT
Found at i:54062095 original size:46 final size:46
Alignment explanation
Indices: 54062039--54062151 Score: 163
Period size: 46 Copynumber: 2.5 Consensus size: 46
54062029 GATGCCAAAT
* * *
54062039 TGTCTTTCAACCATGGTCTTAATCATTTTCCATCGTGTTGTCATAG
1 TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
* **
54062085 TGTCTTTCAACTATGGTCTTATTCATTTTCTGTCATGTTGCCATAG
1 TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
*
54062131 TGTCTTTCAAATATGGTCTTA
1 TGTCTTTCAACTATGGTCTTA
54062152 TTCGTTTGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (46 bp):
TGTCTTTCAACTATGGTCTTAATCATTTTCCATCATGTTGCCATAG
Found at i:54062152 original size:46 final size:46
Alignment explanation
Indices: 54062028--54062293 Score: 182
Period size: 45 Copynumber: 5.8 Consensus size: 46
54062018 ATTCTCAACT
* * ** *
54062028 TGATGCCAAATTGTCTTTCAACCATGGTCTTAATCATTTTCCATCG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * * * *
54062074 TGTTGTCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTGTCA
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * ** *
54062120 TGTTGCCATAGTGTCTTTCAAATATGGTCTTATTCGTTTGAT-TTG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
* * * * * ***
54062165 TGATACCATGGCGTCTTTCAAATATGGTTTTACTCGA--TAGAATCG
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATC-ATTTTCTATCG
** * ** * *
54062210 TGATGCCATAACGTCTTTCAAATATGGTCTTACTC-GCTTCTGGT-A
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCT-ATCG
*
54062255 TGATGCCATAGTGTCTTTCAATTATGGTCTTAATCATTT
1 TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTT
54062294 CCTTTAAGCC
Statistics
Matches: 172, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 95 0.55
46 76 0.44
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (46 bp):
TGATGCCATAGTGTCTTTCAAATATGGTCTTAATCATTTTCTATCG
Found at i:54062742 original size:16 final size:16
Alignment explanation
Indices: 54062718--54062748 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
54062708 TCCCATGAAT
*
54062718 TTTACTCCTTTAACAA
1 TTTAATCCTTTAACAA
54062734 TTTAATCCTTTAACA
1 TTTAATCCTTTAACA
54062749 TTAAAATTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAATCCTTTAACAA
Found at i:54068961 original size:45 final size:45
Alignment explanation
Indices: 54068900--54069105 Score: 186
Period size: 45 Copynumber: 4.6 Consensus size: 45
54068890 TGCCATAGAT
* *
54068900 TCTTTCAACTACGGTCTTATTCGTTTGATTCATGATGTCATAACG
1 TCTTTCAACTATGGTCTTATTCATTTGATTCATGATGTCATAACG
* * *
54068945 TCTTTCAACTATGGTCTAATTTATTTAATTCATGATGTCATAACG
1 TCTTTCAACTATGGTCTTATTCATTTGATTCATGATGTCATAACG
* * * * * **
54068990 TCTTTCAACTATGTTCTTACTCTTTTCTG-GT-ATGATGTCGTAGTG
1 TCTTTCAACTATGGTCTTATTC-ATT-TGATTCATGATGTCATAACG
* * * * *
54069035 TCTTTCAATTATGGTCTTATTTATTTCCGATACA-G-TGACATAATG
1 TCTTTCAACTATGGTCTTATTCATTT--GATTCATGATGTCATAACG
*
54069080 TCTTTCAACTATGGTCTTAATCATTT
1 TCTTTCAACTATGGTCTTATTCATTT
54069106 CCTTTAACCC
Statistics
Matches: 127, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 118 0.93
46 4 0.03
47 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTATTCATTTGATTCATGATGTCATAACG
Found at i:54069003 original size:21 final size:21
Alignment explanation
Indices: 54068934--54069003 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
54068924 TTGATTCATG
54068934 ATGTCATAACGTCTTTCAACT
1 ATGTCATAACGTCTTTCAACT
** *
54068955 ATGGTC-TAATTTATTT-AATTCAT
1 AT-GTCATAACGTCTTTCAA--C-T
54068978 GATGTCATAACGTCTTTCAACT
1 -ATGTCATAACGTCTTTCAACT
54069000 ATGT
1 ATGT
54069004 TCTTACTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
20 2 0.06
21 13 0.36
22 5 0.14
23 5 0.14
24 9 0.25
25 2 0.06
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (21 bp):
ATGTCATAACGTCTTTCAACT
Found at i:54073391 original size:20 final size:21
Alignment explanation
Indices: 54073366--54073405 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
54073356 TCAAAACAGT
54073366 AAATTT-CGTCACAACATCAG
1 AAATTTACGTCACAACATCAG
*
54073386 AAATTTAAGGTCACAACATC
1 AAATTT-ACGTCACAACATC
54073406 GCTCTCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (21 bp):
AAATTTACGTCACAACATCAG
Found at i:54077952 original size:15 final size:17
Alignment explanation
Indices: 54077917--54077950 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
54077907 ACTACTAAGA
54077917 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
54077934 ATTTTGTTAAATTATAT
1 ATTTTATTAAATTATAT
54077951 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:54078058 original size:18 final size:17
Alignment explanation
Indices: 54078036--54078187 Score: 129
Period size: 18 Copynumber: 9.0 Consensus size: 17
54078026 AATACTAAGA
54078036 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
54078053 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
54078069 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
54078083 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
54078102 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
54078118 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
54078136 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
54078153 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
54078171 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
54078188 TTAATAATAA
Statistics
Matches: 109, Mismatches: 13, Indels: 26
0.74 0.09 0.18
Matches are distributed among these distances:
13 2 0.02
14 6 0.06
15 9 0.08
16 9 0.08
17 36 0.33
18 42 0.39
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:54078089 original size:26 final size:25
Alignment explanation
Indices: 54078051--54078109 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
54078041 ATTAAATTAT
*
54078051 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
54078077 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
54078103 ATATTAT
1 ATATTAT
54078110 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:54078108 original size:15 final size:15
Alignment explanation
Indices: 54078064--54078119 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
54078054 TTTTTGTTAA
*
54078064 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
54078079 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
54078090 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
54078105 ATTATATATTATAAT
1 ATTATATTTTATAAT
54078120 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:54078108 original size:120 final size:119
Alignment explanation
Indices: 54077895--54078207 Score: 488
Period size: 120 Copynumber: 2.6 Consensus size: 119
54077885 TGATACAATC
*
54077895 ATAAGAATATTTACTACTAAGAATTTTATTAAATTATATATTTTGTTAAATTATATTTAATAATA
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTGTTAAATTATATTTAATAATA
* *
54077960 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 ATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
54078014 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATA-TTTTGTTAAATTATATTTAATAAT
54078079 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
65 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
*** * * * *
54078134 AT-ATTTTA-TTAA-ATTATATATTTTTATTAAATTATATATTTTATTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTA-AGAATTTTATTAAATTATATATTTTGTTAAATTATATTTAATAAT
*
54078196 AATTATGTTAAA
65 AATTATTTTAAA
54078208 ATATGATTAA
Statistics
Matches: 181, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
117 37 0.20
118 23 0.13
119 42 0.23
120 79 0.44
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (119 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTGTTAAATTATATTTAATAATA
ATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
Found at i:54078157 original size:35 final size:35
Alignment explanation
Indices: 54078036--54078187 Score: 124
Period size: 35 Copynumber: 4.5 Consensus size: 35
54078026 AATACTAAGA
54078036 ATTTTATTAAATTATATATTTTT-GTTAAA-T-TAT
1 ATTTTATTAAATTATATATTTTTAG-TAAATTATAT
* * * * * *
54078069 A-TTTAAT-AATAAT-TATTTTAAATTATATTTTAT
1 ATTTTATTAAATTATATATTTT-TAGTAAATTATAT
* *
54078102 AATATTA-TATATTATA-A-TTTTAGTAAATTCATAT
1 -ATTTTATTAAATTATATATTTTTAGTAAATT-ATAT
*
54078136 ATTTTATTAAATTATATATTTTTATTAAATTATAT
1 ATTTTATTAAATTATATATTTTTAGTAAATTATAT
54078171 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
54078188 TTAATAATAA
Statistics
Matches: 92, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
30 6 0.07
31 8 0.09
32 6 0.07
33 15 0.16
34 16 0.17
35 30 0.33
36 11 0.12
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (35 bp):
ATTTTATTAAATTATATATTTTTAGTAAATTATAT
Found at i:54078390 original size:39 final size:40
Alignment explanation
Indices: 54078332--54078438 Score: 110
Period size: 45 Copynumber: 2.6 Consensus size: 40
54078322 TTTTCCATTA
* *
54078332 TACTATTACACCTCCATTCCATTCAACCAAACACA-AGA-T
1 TACTATTACGCCTCTATTCCATTCAACCAAACA-ATAGATT
*
54078371 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGATT
1 TACTATTACGCCTCTATT-C----CATTCAACCAAACAATAGATT
*
54078416 TGCTATTACGCCTCTATTCCATT
1 TACTATTACGCCTCTATTCCATT
54078439 ACGCCTCTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
39 16 0.28
40 5 0.09
43 1 0.02
44 17 0.30
45 18 0.32
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
TACTATTACGCCTCTATTCCATTCAACCAAACAATAGATT
Found at i:54078407 original size:44 final size:45
Alignment explanation
Indices: 54078344--54078440 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 45
54078334 CTATTACACC
*
54078344 TCCATTCCATTCAACCAAACACA-AGA-TTACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATTTACTATTACGCCTCTAT
* *
54078388 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATTTACTATTACGCCTCTAT
54078433 TCCATTAC
1 TCCATTAC
54078441 GCCTCTATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.46
45 25 0.52
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATTTACTATTACGCCTCTAT
Found at i:54078441 original size:16 final size:16
Alignment explanation
Indices: 54078420--54078452 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
54078410 TTGATTTGCT
54078420 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
54078436 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
54078452 A
1 A
54078453 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:54079095 original size:11 final size:11
Alignment explanation
Indices: 54079079--54079103 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
54079069 AAACTAGAAA
54079079 TAATTTCAATT
1 TAATTTCAATT
54079090 TAATTTCAATT
1 TAATTTCAATT
54079101 TAA
1 TAA
54079104 CTGAATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATTTCAATT
Found at i:54081765 original size:22 final size:23
Alignment explanation
Indices: 54081737--54081781 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
54081727 ATCCAATCTT
54081737 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
54081759 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
54081782 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:54091720 original size:16 final size:16
Alignment explanation
Indices: 54091699--54091731 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
54091689 ATTTTAATTC
54091699 AGTCTATCAATATGGT
1 AGTCTATCAATATGGT
54091715 AGTCTATCAATATGGT
1 AGTCTATCAATATGGT
54091731 A
1 A
54091732 CTCGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (16 bp):
AGTCTATCAATATGGT
Found at i:54091915 original size:33 final size:33
Alignment explanation
Indices: 54091872--54091946 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
54091862 TTTAAGAATC
*
54091872 TATTAAAAATACTTAAATTAACATATACATATA
1 TATTTAAAATACTTAAATTAACATATACATATA
54091905 TATTTAAAATACTTAAATTAACATATACATATA
1 TATTTAAAATACTTAAATTAACATATACATATA
54091938 TATTTAAAA
1 TATTTAAAA
54091947 GAAAACATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (33 bp):
TATTTAAAATACTTAAATTAACATATACATATA
Found at i:54102961 original size:53 final size:53
Alignment explanation
Indices: 54102881--54102986 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
54102871 GTGTAGTTAT
* * * *
54102881 TTTATTTAGCCCTGCGAGTGGATTTACGGACACTGACTTTATACCGTAGCTTC
1 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
54102934 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
1 TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
54102987 CTCTTCATGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (53 bp):
TTTATTCAGCCCTACGAGTGGATTTACGGACACTGACTTTAAACCGCAGCTTC
Found at i:54107206 original size:305 final size:305
Alignment explanation
Indices: 54106655--54107262 Score: 1018
Period size: 305 Copynumber: 2.0 Consensus size: 305
54106645 AGCTTCACAT
* *
54106655 TCTAAAATAAGGAAATCCACAGAAAAATAAATTTATCTACTCTTACCAGCACATAGTCAATTTTA
1 TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
* *
54106720 CCTTCCGAATGTGCGTAGGATCAATCAGTTAGTTGCAACGTAACAGTAGTTGGTCTTACTTTCCT
66 CCTTCCGAATGTGCGTAGGATCAATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
*
54106785 AACTTCCTGAAAATAGACGTAGGCATTAGATTTACACTCACTTCTAAATCACATAATGCCTTACC
131 AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
** *
54106850 AACATAATGATTTCCAATTGAACATGGGATAGTGAAACTCCCTGGGTCATTCAACTTTGGAGGTA
196 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
54106915 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACTG
261 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACTG
*** *
54106960 TCTAAAATAAGAAAATTTTCAGAAAAATAAATTTATCTACTCTTACCAACACATATTCAATTTTA
1 TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
* * * * * * *
54107025 CCTTCCGGATGTGTGTAGGATCGATCAGCTAGTTGTAACGTAACCGTAGTAGGTCTTATTTTTCT
66 CCTTCCGAATGTGCGTAGGATCAATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
* *
54107090 AACTTCTTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTTTAAATCACATAATGCCTTACC
131 AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
54107155 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
196 AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
*
54107220 ATTTATTCATCAACATTGTTGTTCACCCTTCAGTGAGAGCAAC
261 ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAAC
54107263 AGTTTCAAAT
Statistics
Matches: 281, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
305 281 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (305 bp):
TCTAAAATAAGAAAATCCACAGAAAAATAAATTTATCTACTCTTACCAACACATAGTCAATTTTA
CCTTCCGAATGTGCGTAGGATCAATCAGCTAGTTGCAACGTAACAGTAGTAGGTCTTACTTTCCT
AACTTCCTGAAAATAGACGTAGGCATTAGATTTAAACTCACTTCTAAATCACATAATGCCTTACC
AACATAATGATTTCCAATTGAACATAAGATAGTGAAACTCCCTGGGTCATTCAACTTTAGAGGTA
ATTTATTCATCAACATTGTTGTTCACCCTTCAATGAGAGCAACTG
Found at i:54110334 original size:20 final size:20
Alignment explanation
Indices: 54110309--54110348 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
54110299 ACAATTCATG
54110309 TAGAATAATGCAATAAAGAA
1 TAGAATAATGCAATAAAGAA
54110329 TAGAATAATGCAATAAAGAA
1 TAGAATAATGCAATAAAGAA
54110349 CACAAGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (20 bp):
TAGAATAATGCAATAAAGAA
Found at i:54110622 original size:17 final size:17
Alignment explanation
Indices: 54110600--54110649 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
54110590 TCTCATATTT
54110600 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
54110617 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
54110634 TGATACCCATATCTTT
1 TGATACCCATATCTTT
54110650 GACTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:54125644 original size:17 final size:17
Alignment explanation
Indices: 54125622--54125671 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
54125612 TCTCAGATTT
54125622 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
54125639 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
54125656 TGATACCCATATCTTT
1 TGATACCCATATCTTT
54125672 GACTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:54127925 original size:69 final size:69
Alignment explanation
Indices: 54127726--54127935 Score: 206
Period size: 69 Copynumber: 3.0 Consensus size: 69
54127716 AGCTCTCAGC
* * * * ** * ** * *
54127726 TGTCATATTAAGGTTCGTAGGCAAAGAGTCGTAACCTCTAAAATAAATAGTTAGAGCAAACCTCC
1 TGTCATATTAAGGTTTGCAGGAAAAGAGCCACAACCTCCAAAATAGTTAGTAAGAGCAAAGCTCC
*
54127791 CAAC
66 CAAT
** * * * ***
54127795 TGTCATATTAAGGTTCT-CAGGTGAATAGCCACAACCTTCAAAACAGTTACCGAGAGCAAAGCTC
1 TGTCATATTAAGGTT-TGCAGGAAAAGAGCCACAACCTCCAAAATAGTTAGTAAGAGCAAAGCTC
54127859 CCAAT
65 CCAAT
*
54127864 TGTCATATTAAGGTTTGCAGGAAAAGAGCCACAACCTCCAAAATAGTTAGTAAGAGTAAAGCTCC
1 TGTCATATTAAGGTTTGCAGGAAAAGAGCCACAACCTCCAAAATAGTTAGTAAGAGCAAAGCTCC
*
54127929 CAGT
66 CAAT
54127933 TGT
1 TGT
54127936 GTCGCGTGTG
Statistics
Matches: 111, Mismatches: 28, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
68 1 0.01
69 110 0.99
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (69 bp):
TGTCATATTAAGGTTTGCAGGAAAAGAGCCACAACCTCCAAAATAGTTAGTAAGAGCAAAGCTCC
CAAT
Found at i:54129528 original size:69 final size:69
Alignment explanation
Indices: 54129446--54129757 Score: 403
Period size: 69 Copynumber: 4.5 Consensus size: 69
54129436 AATGCATGAA
*
54129446 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAGC
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAGT
54129511 TGTC
66 TGTC
* * * * * * *
54129515 ATATTAAGGTTCGCAGGTGAAGAGCCACAACCTCCAAAACAGTTAGTGAGAGCAAAGCTTCTAGT
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAGT
54129580 TGTC
66 TGTC
** ** *
54129584 ATATTAAGGTTCATAGGCGAAGAGTCGCAACCTCCAAAATAGTTA-CTGAGAGCAAAGCTCCCAA
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGC-GAGAGCAAAGCTCCCAG
54129648 TTGTC
65 TTGTC
* * *
54129653 ATATTAAGGTTTGCAGGCGAAGAA-CGCAACCTCCAAAAAAATTAGCGAGAGCAAAGCTCCCAGT
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAGT
*
54129717 TATC
66 TGTC
* * ** *
54129721 ATATAAAGGTTCGAAGATGAAGAACCACAACCTCCAA
1 ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAA
54129758 GACATTTAGT
Statistics
Matches: 208, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
68 57 0.27
69 151 0.73
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (69 bp):
ATATTAAGGTTCGCAGGCGAAGAACCGCAACCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAGT
TGTC
Found at i:54144644 original size:32 final size:32
Alignment explanation
Indices: 54144590--54144651 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
54144580 GAGAGAGGTG
54144590 AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
1 AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
*
54144622 AAGTTGGCTCC-TGGAGGTGTTGACTTCAAT
1 AAGTTGGCACCTTGGAGG-GTTGACTTCAAT
54144652 TTACGTACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 6 0.21
32 22 0.79
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (32 bp):
AAGTTGGCACCTTGGAGGGTTGACTTCAATCA
Found at i:54148367 original size:28 final size:26
Alignment explanation
Indices: 54148336--54148390 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
54148326 CTTTTTTGAG
*
54148336 TTAATAAATTCTCTTTGAGTTTTTCTTT
1 TTAAGAAATTCTC-TTGAG-TTTTCTTT
* *
54148364 TTAAGAATTTTTCTTGAGTTTTCTTT
1 TTAAGAAATTCTCTTGAGTTTTCTTT
54148390 T
1 T
54148391 AGAAGAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.38
27 5 0.21
28 10 0.42
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (26 bp):
TTAAGAAATTCTCTTGAGTTTTCTTT
Found at i:54148396 original size:27 final size:27
Alignment explanation
Indices: 54148350--54148401 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
54148340 TAAATTCTCT
*
54148350 TTGAGTTTTTCTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTGAAGAATTTTTC
*
54148377 TTGAG-TTTTCTTTTAGAAGAGTTTT
1 TTGAGTTTTTCTTTT-GAAGAATTTT
54148402 AACAGTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTGAAGAATTTTTC
Found at i:54148401 original size:26 final size:27
Alignment explanation
Indices: 54148350--54148401 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
54148340 TAAATTCTCT
* *
54148350 TTGAGTTTTTCTTTTTAAGAATTTTTC
1 TTGAGTTTTTCTTTTGAAGAAGTTTTC
54148377 TTGAG-TTTTCTTTTAGAAG-AGTTTT
1 TTGAGTTTTTCTTTT-GAAGAAGTTTT
54148402 AACAGTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTGAAGAAGTTTTC
Found at i:54148604 original size:18 final size:19
Alignment explanation
Indices: 54148566--54148608 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
54148556 ATTTATCTTC
54148566 TTTATTGTTCTAATCTTTTA
1 TTTATTGTTCT-ATCTTTTA
*
54148586 TTTATTGTTCT-TTTTTTA
1 TTTATTGTTCTATCTTTTA
54148604 TTTAT
1 TTTAT
54148609 CTTAGTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
20 11 0.50
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTATTGTTCTATCTTTTA
Found at i:54148611 original size:14 final size:16
Alignment explanation
Indices: 54148578--54148622 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
54148568 TATTGTTCTA
54148578 ATCTTTTATTTATTGT
1 ATCTTTTATTTATTGT
54148594 -TCTTTT-TTTATT-T
1 ATCTTTTATTTATTGT
54148607 ATCTTAGTTATTTATT
1 ATCTT--TTATTTATT
54148623 TAATTACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
15 6 0.24
16 2 0.08
17 6 0.24
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (16 bp):
ATCTTTTATTTATTGT
Found at i:54156112 original size:27 final size:27
Alignment explanation
Indices: 54156080--54156195 Score: 72
Period size: 27 Copynumber: 4.3 Consensus size: 27
54156070 TTTCATCTCC
*
54156080 TAGGGGTATAACAACCATTTTATCCTA
1 TAGGGGTATAACAACCATTTTACCCTA
* ** **
54156107 TGGGGGTATTTCAGTCATTTTACCCTA
1 TAGGGGTATAACAACCATTTTACCCTA
******
54156134 TAGGGGTATTTTGGTCATTTTACCCTA
1 TAGGGGTATAACAACCATTTTACCCTA
** * *
54156161 T-GGGGTATTTCGATCATTTTACCCTA
1 TAGGGGTATAACAACCATTTTACCCTA
*
54156187 TGGGGGTAT
1 TAGGGGTAT
54156196 TTTGGTCATT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.31
27 53 0.69
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (27 bp):
TAGGGGTATAACAACCATTTTACCCTA
Found at i:54156204 original size:27 final size:27
Alignment explanation
Indices: 54156095--54156350 Score: 298
Period size: 27 Copynumber: 9.5 Consensus size: 27
54156085 GTATAACAAC
* *
54156095 CATTTTATCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
54156122 CATTTTACCCTATAGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
*
54156149 CATTTTACCCTAT-GGGGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
*
54156175 CATTTTACCCTATGGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
54156202 CATTTTACCTTATGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
54156229 CATTTTACCCTATGGGGGTTATTTTGAT
1 CATTTTACCCTATGGGGG-TATTTCGGT
* * * *
54156257 CATTTTACCTTATAGGTGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * *
54156284 TATTTTACCCTATGAGGGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * * **
54156311 TATTTTATCCTATGAGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
54156338 CATTTTACCCTAT
1 CATTTTACCCTAT
54156351 TTTGGAGTCT
Statistics
Matches: 197, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 24 0.12
27 151 0.77
28 22 0.11
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCGGT
Found at i:54156290 original size:82 final size:81
Alignment explanation
Indices: 54156095--54156350 Score: 313
Period size: 82 Copynumber: 3.2 Consensus size: 81
54156085 GTATAACAAC
* * *
54156095 CATTTTATCCTATGGGGGTATTTC-AGTCATTTTACCCTAT-AGGGGTATTTTGGTCATTTTACC
1 CATTTTACCCTATAGGGGTATTTCGA-TCATTTTACCCTATGA-GGGTATTTCGGTCATTTTACC
*
54156158 CTAT-GGGGTATTTCGAT
64 CTATGGGGGTATTTTGAT
* * * *
54156175 CATTTTACCCTATGGGGGTATTTTGGTCATTTTACCTTATGAGGGTATTTCGGTCATTTTACCCT
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCT
54156240 ATGGGGGTTATTTTGAT
66 ATGGGGG-TATTTTGAT
* * * * * *
54156257 CATTTTACCTTATAGGTGTATTTCGATTATTTTACCCTATGAGGGTATTTCGATTATTTTATCCT
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCT
*
54156322 ATGAGGGTATTTT-AGT
66 ATGGGGGTATTTTGA-T
54156338 CATTTTACCCTAT
1 CATTTTACCCTAT
54156351 TTTGGAGTCT
Statistics
Matches: 153, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
80 60 0.39
81 24 0.16
82 69 0.45
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (81 bp):
CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCT
ATGGGGGTATTTTGAT
Found at i:54160131 original size:26 final size:26
Alignment explanation
Indices: 54160102--54160151 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
54160092 GAATATCAGA
54160102 CCTTGAGCCGGTG-TTGATTTAGCATG
1 CCTTGAGCCGGTGCTT-ATTTAGCATG
*
54160128 CCTTGAGCCTGTGCTTATTTAGCA
1 CCTTGAGCCGGTGCTTATTTAGCA
54160152 AGCTTTGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (26 bp):
CCTTGAGCCGGTGCTTATTTAGCATG
Done.