Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 178 of 222
Found at i:56989710 original size:2 final size:2
Alignment explanation
Indices: 56989703--56989727 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
56989693 CCCTATCAGC
56989703 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
56989728 GCTTTCTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:56993286 original size:436 final size:433
Alignment explanation
Indices: 56992038--56995287 Score: 3613
Period size: 434 Copynumber: 7.6 Consensus size: 433
56992028 ACCAGCCTAA
* *
56992038 GGCTAAATGGGGTTTA-TTCGAGCATGAAATTAATCGTACTCGATTGGGGTTTAAAAATGGATTT
1 GGCTAAATGGGGTTTAGTT-GAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
** * * * *
56992102 GAATGTAATGGTGATAAGTGAAAATAAGGAAGGACTTAAAAAGTAATTAAACCAAAAAATAAGAA
65 GAATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACC-AAAAATAAGGA
* * ** * * *
56992167 AATCGAAAAAAAAT-GAAAGTAAACTTGAATAGCTACTGATGATTGAAAAAGAAAAGAATTATTA
129 AAT-GGAAAAAAATGGCAA-TAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTT
*
56992231 TTAATTCTATT-CAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACAT-TTTTCATA
192 TTAATTCTATTAC-AGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATAC-TCTTTTCATA
* *
56992294 TGCCAAATTTAGCATGATTCCTTCTAAGATTATGCCTAACAACCAACTAAATTCA-ATTTTTTTT
255 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTT
* * * ** *
56992358 ATATTCTTAGAGTTTGACAAATTCACAATCTGATTTTTAATCAACCACTAATTCAACAACTTTTT
320 CTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTC
* * * *
56992423 GATTTGGCCCCTTTTATTGCTTCTTGTTCCAATTTAG-CCAATTTGCTT
385 AATTTGGCCCATTTTATTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * *
56992471 GACTAAATGGGGTTTAGTTGAGCATGAAATTTATCATACTCGATTGGAGTTTAAAAATGGATTTC
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * * ** *
56992536 AACGTAAAGATGATAGGTGAAAAGGAGAAAGGACTTAAAAATAAATTGAATTAAAAAAAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
56992601 TGGGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATG--A-A-AAAAGAATTGTTTTT
131 T--GGAAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* * * * * *
56992662 AATTCTATTTCACTGTGTTTTTTCTAAGCCACCATTACAAGGTATTTACACACTTTTCATCTGCC
194 AATTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCC
* * * * *
56992727 AAATTTAGCATGATTACTCATATGATTATGCCTAACAACCAACAAAAATAAGATTTTTTTTCTAT
259 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCTAT
* * * * *
56992792 TCATAGAGTTTGAAAAAATCATAATATGATTTTTTATCAGCCACTAATTCTGCAACTTTTCAATT
324 TCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATT
* * * *
56992857 TGACCTATTTTATTGTTTCCCGTTCCAATTGAGCCCAATTTGCTT
389 TGGCCCATTTTATTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * *
56992902 GGCTAAATGGGTTTTAGTTTAGCATGAAATTAATCATACTCGATTGAGATTTAAAATTGGATTTG
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * *
56992967 ATTGTAATGGTGATAAGTGAAGAGGCGAATA-GACTTAAAAAGAAATTTAACCAAAAATAAGGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAA-AGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
* *
56993031 ATGGAAAAAAATTGGCAACAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAATAATTGTTTTT
130 ATGGAAAAAAA-TGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* * * * *
56993096 AATTCTATTCCAGTGTGCTTTTTTTCCAAGTCACCATTACAAGGTATTTATACACTTTTCATCTG
194 AATTCTATTACAGTGTG--TTTTTTCAAAGCCACCATTACAAGGTATTTATACTCTTTTCATATG
* ** *
56993161 CCAAATTTAGCATGATTCCTCCTAAGATTAGGCCTAACAATTAACTAAAATCAGATTTTCTTTCT
257 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCT
* * * * * *
56993226 ATTCATAGGGTTTGACAAATTCACAATTTGGTTTTTAATCAGTCACTAGTTCTCCAAC-TTTCAA
322 ATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA
* **
56993290 TTTCGCCCATTTTATTACTTCTCGTTCCAATTTAGCCCAATTTGCTT
387 TTTGGCCCATTTTATTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * * * * *
56993337 GACCAAATTGGGTTTAGTTAAGCATGAAACTAATCATACTCCATTGGGGTTGAAAAGGGGATTTG
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
** * * * *
56993402 AACATAATGGTGATAAGTGAAAGGGAGAAAAGACTTAAAAAGCAATTGAACCAAAAAAAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * * *
56993467 TGGAAAAAAAAATGGCAGTAAACTTGAATAGCTACTAATACGTGAAAGCGAAAAGAATTGTTTTT
131 TGG--AAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* * * * * * *
56993532 AATTCTATTACAATGTGCTTTTTCGAAGCAACCCTTACAAGGTATTTGT-CTTTTTTTTTTCATA
194 AATTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATAC----TCTTTTCATA
** * *
56993596 TGTAAAATTTAGCATGATTCCTCCTAAGATTATGTCTAACAACCAACTAAAATCAAAATTTTTTT
255 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATC-AGATTTTTTT
* * * * *
56993661 TCTTTTAATAGAGTTTGACAAATTCACAATCTGGTTCTTAATCAACCACTAATTCTGCAACTTTT
319 TCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTT
* * *
56993726 CAATTTGGCCTA-TTTATTTCTTTC-CGTTTCAATTTAGCCCAATTTGCTT
384 CAATTTGGCCCATTTTA-TTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * *
56993775 GGCTAAATGGGGTTTACTTGAGCATGAAATTAATCATACTTGATTAGGGTTTAAAAGTGGGTTTG
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * * *
56993840 AATGTAACGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAAGTAATTAAATCAAAAATAAAGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * * *
56993905 TGG-AAAAAATGGCAGTAAACTTGAATATCTACTGATGTGTGAAAGAGAGAAGAATTGTTTTTAA
131 TGGAAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTAA
* * *
56993969 TTCTATTACAGTGTGTTTTTTCAAAGCCACTA-CACAAGATATTTATACTCTTTTCATATGCCAA
196 TTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCAA
56994033 ATTTAGC---A-------T--G---AT---T-----CCAACTAAAATCAG-TTTTTTTTCTATTC
261 ATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCTATTC
* * * * * *
56994074 ATAGAGTTTGACAAATTCACAATTTGATTTTTAATGAGTCATTAATTATGCAATTTTTCAATTTG
326 ATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATTTG
* * *
56994139 GCCCCTTTTATTGTTTCTCG-TCCTAATTTATCCCAATTTTCTT
391 GCCCATTTTATTGTTTCTCGTTCC-AATTTAGCCCAATTTGCTT
* * * *
56994182 GGCTAAATGGGGTTTAGTTCAACATGAAATTAATCATACTCGATTGGGGTTTAAAATTCGATTTG
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * * *
56994247 AACGTAATTGTGATAGGTGAAAAAGAGAAAGGACTT-AAAAGGAATTGAACCAAAAATAAAGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * * * * * *
56994311 CGGAAAAAAATGCCAGTAAACTTGAATAGCTATTGATGTGTGAAAGAGAAAAGAATTATTATTAA
131 TGGAAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTAA
*
56994376 TTCTATTATAGTGTGTTTTTTCAAAGCCACCA-TACAAGGTAGCTATTTATACTCTTTTCATATG
196 TTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAA-G--G-TATTTATACTCTTTTCATATG
* *
56994440 CCAAATTTAGCGTGATTCCTCCTCAGATTATGCCTAACAACCAACTAAAATCA-ATTTTTTTTCT
257 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCT
* ** * * * *
56994504 ATTCATAGAGTTTGACAAATTCACAATCTAATTAGTAATCAGTCATTCATTCTGCAACTTTTCAT
322 ATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA
* * * * *
56994569 TTTGGCCCTTTTTATTGCTTCTTGTTCCAATTTAGCCCAAGTAGCTT
387 TTTGGCCCATTTTATTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * * * * *
56994616 GGGTAAATGGTGTTTAGTTAAGAATGAAATTAATCATACTCTATTGGGGATTAAAAGTGGATATC
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * *
56994681 AATGTAATTGTGATAGGTGAAAAGGAGAGAA-AATTTTAAAA-AAATTGAACCAAAAATAAGGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGA-AAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
* * * * *
56994744 ATGG-AAAAAATGGCAATGAACTTGAATAACTGCTGATGCATGAAAGAGAAAAGAATTCTTTTTA
130 ATGGAAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* * * * * **
56994808 A-TCTATTCCAGCGTGTTTTTTTAAAGCCATCATT-CAAGGTATTTATACTCTTTTCTTATATCA
195 ATTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
* * * *
56994871 AATTTAACATGATTCCTCCTAAGTTTATTCCTAACAACCAACTAAAATCAGAATTTTTATT-TAT
260 AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAG-ATTTTTTTTCTAT
* * * * * *
56994935 TTATAAAGTTTGA-AAGATTCACAATCTGATTTTTAATCAACCGA-TAATTTTGTAACTTTTTAA
324 TCATAGAGTTTGACAA-ATTCACAATCTGATTTTTAATCAGCC-ACTAATTCTGCAACTTTTCAA
* * *
56994998 ATTGGCCCCTTTTATTGCTTTC-CATTCCAATTTAGCCCAATTTGCTT
387 TTTGGCCCATTTTATTG-TTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * *
56995045 GGCTAAATAGGGTTTAGTTGAGTATGAAATTAATCATACTCGATTGAGGTTTAAAAGTGAATTTG
1 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* *** * * *** *
56995110 ATTGTAACAATGATAAGTGAAAATGAGAAAGGACTTAAAAAGCAATTGAATGGAAAATAATGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
56995175 TGGAAAAAAAATTAGCTATAAACTTGAATAGCTA-TAGATGCGTGAAAGAGAAAAGAATTGTTTT
131 TGG-AAAAAAA-TGGCAATAAACTTGAATAGCTACT-GATGCGTGAAAGAGAAAAGAATTGTTTT
* * *
56995239 TAATTTTATTATAGTGTGTTTTTTTCCAAGCCACCATTACAAGGTATTT
193 TAATTCTATTACAGTGTG-TTTTTTCAAAGCCACCATTACAAGGTATTT
56995288 GTAATAGGCC
Statistics
Matches: 2366, Mismatches: 375, Indels: 149
0.82 0.13 0.05
Matches are distributed among these distances:
406 106 0.04
407 202 0.09
408 13 0.01
411 32 0.01
413 1 0.00
414 1 0.00
416 2 0.00
419 1 0.00
421 2 0.00
423 1 0.00
426 2 0.00
428 71 0.03
429 293 0.12
430 156 0.07
431 141 0.06
432 50 0.02
433 230 0.10
434 302 0.13
435 263 0.11
436 219 0.09
437 62 0.03
438 198 0.08
439 18 0.01
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
TGGAAAAAAATGGCAATAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTAA
TTCTATTACAGTGTGTTTTTTCAAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCAA
ATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCTATTC
ATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATTTG
GCCCATTTTATTGTTTCTCGTTCCAATTTAGCCCAATTTGCTT
Found at i:56996801 original size:23 final size:23
Alignment explanation
Indices: 56996764--56996810 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
56996754 CATTTCCCCC
56996764 TTATAATTTACATTTTTTTTATTT
1 TTATAATTTACA-TTTTTTTATTT
*
56996788 TTATACTTT-CATTTTTTTATTT
1 TTATAATTTACATTTTTTTATTT
56996810 T
1 T
56996811 CATTAAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 2 0.09
24 8 0.36
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATAATTTACATTTTTTTATTT
Found at i:56997927 original size:24 final size:25
Alignment explanation
Indices: 56997900--56997950 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
56997890 AATTTAATGA
*
56997900 TTGA-GCTTTAAATATGTCATAAGC
1 TTGATGCTTTAAACATGTCATAAGC
* *
56997924 TTGATGTTTTAAACATGTTATAAGC
1 TTGATGCTTTAAACATGTCATAAGC
56997949 TT
1 TT
56997951 ATTAATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (25 bp):
TTGATGCTTTAAACATGTCATAAGC
Found at i:57001685 original size:3 final size:3
Alignment explanation
Indices: 57001665--57001726 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
57001655 ACATATATGT
* *
57001665 ATA ATA ATG ATGA A-A ATA ATA ATA ATA ATA GTGA A-A ATAA ATA AT-
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA AT-A ATA AT-A ATA ATA
57001710 ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA
57001727 GTAACAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
2 8 0.17
3 35 0.73
4 5 0.10
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:57001691 original size:21 final size:22
Alignment explanation
Indices: 57001665--57001715 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
57001655 ACATATATGT
57001665 ATAATAAT-GATGAAAAT-AATA
1 ATAATAATAG-TGAAAATAAATA
57001686 ATAATAATAGTGAAAATAAATA
1 ATAATAATAGTGAAAATAAATA
57001708 AT-ATAATA
1 ATAATAATA
57001716 ATAATATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (22 bp):
ATAATAATAGTGAAAATAAATA
Found at i:57001709 original size:16 final size:16
Alignment explanation
Indices: 57001681--57001735 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
57001671 ATGATGAAAA
57001681 TAATAAT-AATAATAG
1 TAATAATAAATAATAG
57001696 TGAA-AATAAATAATA-
1 T-AATAATAAATAATAG
57001711 TAATAATAATATAATAG
1 TAATAATAA-ATAATAG
*
57001728 TAACAATA
1 TAATAATA
57001736 TTAGTAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 2 0.06
15 10 0.29
16 15 0.44
17 7 0.21
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (16 bp):
TAATAATAAATAATAG
Found at i:57003741 original size:71 final size:69
Alignment explanation
Indices: 57003551--57003857 Score: 363
Period size: 71 Copynumber: 4.5 Consensus size: 69
57003541 AACATGTGAA
* * * * *
57003551 CTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTTACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA---ATTTGAAAACAGAAATTGAAAATACCT
*
57003616 CAGCGTGT
62 CAACGTGT
*
57003624 CCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTGAAAAGCAGAAATTGAAAATACCTC
1 -CTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTGAAAA-CAGAAATTGAAAATACCTC
57003689 AACGTGT
63 AACGTGT
57003696 CTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 CTGAGGCTCAACTCATTCTCGCAATATGAGTTGAA-TTTGAAAA-CAGAAATTGAAAATACCTCA
57003761 ACGTGT
64 ACGTGT
57003767 CTTGAGGCTCAACTCATTCTCGCAATAT-AG-TGAA---GAAAACAGAAATTG-AAA-A-CTCAA
1 C-TGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTGAAAACAGAAATTGAAAATACCTCAA
57003824 --TGT
65 CGTGT
57003827 CTGAGGC-CAACTCA-TCT-GCAATATGA-TTGAA
1 CTGAGGCTCAACTCATTCTCGCAATATGAGTTGAA
57003858 AAAAAAAAAA
Statistics
Matches: 219, Mismatches: 9, Indels: 27
0.86 0.04 0.11
Matches are distributed among these distances:
56 7 0.03
57 8 0.04
58 7 0.03
59 6 0.03
60 4 0.02
62 5 0.02
63 1 0.00
64 3 0.01
65 9 0.04
66 5 0.02
70 24 0.11
71 58 0.26
72 50 0.23
74 32 0.15
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (69 bp):
CTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTGAAAACAGAAATTGAAAATACCTCAAC
GTGT
Found at i:57003862 original size:1 final size:1
Alignment explanation
Indices: 57003856--57003904 Score: 98
Period size: 1 Copynumber: 49.0 Consensus size: 1
57003846 AATATGATTG
57003856 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
57003905 GAAATGGAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:57029068 original size:6 final size:6
Alignment explanation
Indices: 57029053--57029094 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
57029043 GTATTGTTCA
* *
57029053 CTTTTT -TTTTT CTTTTT CTTTTCC CTTTTT CTTCTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTT-T CTTTTT CTTTTT CTTTTT
57029095 TTCCCACTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 5 0.17
6 20 0.67
7 5 0.17
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:57029087 original size:22 final size:22
Alignment explanation
Indices: 57029056--57029099 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
57029046 TTGTTCACTT
*
57029056 TTTTTTTTCTT-TTTCTTTTCCC
1 TTTTTCTTCTTCTTT-TTTTCCC
57029078 TTTTTCTTCTTCTTTTTTTCCC
1 TTTTTCTTCTTCTTTTTTTCCC
57029100 ACTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTCTTCTTCTTTTTTTCCC
Found at i:57033700 original size:24 final size:24
Alignment explanation
Indices: 57033672--57033722 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
57033662 TTCTAGAAGT
* * *
57033672 TTTAGTATTTATGAGTATAATATA
1 TTTAGCATTTATAAGCATAATATA
57033696 TTTAGCATTTATAAGCATAATATA
1 TTTAGCATTTATAAGCATAATATA
57033720 TTT
1 TTT
57033723 GACTTTGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (24 bp):
TTTAGCATTTATAAGCATAATATA
Found at i:57038137 original size:41 final size:41
Alignment explanation
Indices: 57038070--57038177 Score: 155
Period size: 41 Copynumber: 2.7 Consensus size: 41
57038060 TTTCGGGACA
* * * *
57038070 TTAGCGGTGTTTTTAGAAAAGTGCCGCTAATGCTCTGGTTT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCT
*
57038111 TTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTCTGGTCT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCT
*
57038152 TTAGCAGCG-TTTTGGAAAAGCGCCGC
1 TTAGCGGCGTTTTTGGAAAAGCGCCGC
57038178 AAAAACATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
40 16 0.27
41 44 0.73
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTCT
Found at i:57038559 original size:22 final size:21
Alignment explanation
Indices: 57038534--57038587 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
57038524 GAGTTACTAT
57038534 TTTAAGGTTTATGGATTATGAG
1 TTTAAGGTTTATGGATTAT-AG
* *
57038556 TTTAAGGGTTATGGTTTATAG
1 TTTAAGGTTTATGGATTATAG
*
57038577 TTTATGGTTTA
1 TTTAAGGTTTA
57038588 AGATTTAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTATGGATTATAG
Found at i:57038579 original size:7 final size:7
Alignment explanation
Indices: 57038534--57038622 Score: 61
Period size: 7 Copynumber: 12.6 Consensus size: 7
57038524 GAGTTACTAT
*
57038534 TTTAAGG
1 TTTATGG
57038541 TTTATGG
1 TTTATGG
*
57038548 ATTATGAG
1 TTTATG-G
*
57038556 TTTAAGG
1 TTTATGG
*
57038563 GTTATGG
1 TTTATGG
*
57038570 TTTATAG
1 TTTATGG
57038577 TTTATGG
1 TTTATGG
* *
57038584 TTTAAGA
1 TTTATGG
*
57038591 TTTAGGG
1 TTTATGG
*
57038598 TTTAAGG
1 TTTATGG
* * *
57038605 GTTGTGA
1 TTTATGG
57038612 TTTATGG
1 TTTATGG
57038619 TTTA
1 TTTA
57038623 ATGTTATAGG
Statistics
Matches: 60, Mismatches: 21, Indels: 2
0.72 0.25 0.02
Matches are distributed among these distances:
7 55 0.92
8 5 0.08
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:57038580 original size:21 final size:21
Alignment explanation
Indices: 57038491--57038623 Score: 83
Period size: 21 Copynumber: 6.3 Consensus size: 21
57038481 TAAGGTTTTG
*
57038491 GTTT-AGGGTATATGATTTAGA
1 GTTTAAGGGT-TATGATTTATA
* * *
57038512 GTTT-AGGTTTAAGAGTTACTA
1 GTTTAAGGGTTATGATTTA-TA
* *
57038533 TTTTAAGGTTTATGGA-TTATGA
1 GTTTAAGGGTTAT-GATTTAT-A
*
57038555 GTTTAAGGGTTATGGTTTATA
1 GTTTAAGGGTTATGATTTATA
* * * **
57038576 GTTTATGGTTTAAGATTTAGG
1 GTTTAAGGGTTATGATTTATA
* *
57038597 GTTTAAGGGTTGTGATTTATG
1 GTTTAAGGGTTATGATTTATA
57038618 GTTTAA
1 GTTTAA
57038624 TGTTATAGGT
Statistics
Matches: 87, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
20 7 0.08
21 52 0.60
22 26 0.30
23 2 0.02
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.47
Consensus pattern (21 bp):
GTTTAAGGGTTATGATTTATA
Found at i:57038661 original size:21 final size:21
Alignment explanation
Indices: 57038637--57038700 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
57038627 TATAGGTTAA
57038637 GGGTTGAGGTTTAAGGTTTAG
1 GGGTTGAGGTTTAAGGTTTAG
57038658 GGGTTGAGAG-TTAAGAG-TTAG
1 GGGTTGAG-GTTTAAG-GTTTAG
* *
57038679 GGGTTTAGGATTTAGGGTTTAG
1 GGGTTGAGG-TTTAAGGTTTAG
57038701 ATTAATTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
20 1 0.03
21 25 0.69
22 10 0.28
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (21 bp):
GGGTTGAGGTTTAAGGTTTAG
Found at i:57039493 original size:38 final size:39
Alignment explanation
Indices: 57039420--57039500 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
57039410 TAAAATCACT
* *
57039420 AAAATAAGCATTAGCGGCGCTTTTCGAAAAACGCCGCTA
1 AAAATAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCAA
* * * *
57039459 AAAATGAGCATTAGTGGCGTTTTTAG-AAAGCGCCGCAA
1 AAAATAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCAA
57039497 AAAA
1 AAAA
57039501 CTAGGCCCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
38 14 0.39
39 22 0.61
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (39 bp):
AAAATAAGCATTAGCGGCGCTTTTAGAAAAACGCCGCAA
Found at i:57052871 original size:73 final size:74
Alignment explanation
Indices: 57052785--57053270 Score: 569
Period size: 73 Copynumber: 6.5 Consensus size: 74
57052775 AATGTGACCC
* **
57052785 GAGG-TCAACTCACCTCTCG-AATATGAGTTGATTTTTTTG-AAAATAGATTTTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTC
57052847 AG-GTGTCCCT
65 AGCGTGT-CCT
*
57052857 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACAGAAATTGAACAAATTA-C
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG-A-AAA-TACC
*
57052921 TCAGTGTGT-CT
63 TCAGCGTGTCCT
*
57052932 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAACATAAATTGACAGATTGAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG--A-A---AAT
* *
57052995 ACCTCAACGTGTCTT
60 ACCTCAGCGTGTCCT
57053010 GAGGCTCCAACTCACCTCTCGCAATATGAGTTGATTTTCTTTGAAAAACAAGAAATTGAAAATAC
1 GAGGCT-CAACTCACCTCTCGCAATATGAGTTGA-TTT-TTTGAAAAAC-AGAAATTGAAAATAC
*** *
57053075 CTCAATATGTCTT
62 CTCAGCGTGTCCT
* *
57053088 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCA
57053152 GCGTGTCCT
66 GCGTGTCCT
** ** * *
57053161 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-AATTTGGAAAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCA
57053225 GCGTGTCCT
66 GCGTGTCCT
**
57053234 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
57053271 GAAAACAAAA
Statistics
Matches: 366, Mismatches: 28, Indels: 38
0.85 0.06 0.09
Matches are distributed among these distances:
72 4 0.01
73 156 0.43
74 39 0.11
75 38 0.10
76 10 0.03
77 43 0.12
78 29 0.08
79 27 0.07
81 3 0.01
82 5 0.01
83 5 0.01
84 7 0.02
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (74 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCA
GCGTGTCCT
Found at i:57065825 original size:21 final size:20
Alignment explanation
Indices: 57065799--57065871 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 20
57065789 ACATATATGT
57065799 ATAATAATGATGAAAATAATA
1 ATAATAAT-ATGAAAATAATA
57065820 ATAATAATAGTGAAAATAAATA
1 ATAATAATA-TGAAAAT-AATA
57065842 AT-ATAATAAT-AAATATAATA
1 ATAATAAT-ATGAAA-ATAATA
* *
57065862 GTAACAATAT
1 ATAATAATAT
57065872 TAGTAATATG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
20 11 0.24
21 27 0.60
22 7 0.16
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (20 bp):
ATAATAATATGAAAATAATA
Found at i:57065843 original size:16 final size:15
Alignment explanation
Indices: 57065814--57065856 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
57065804 AATGATGAAA
57065814 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
57065828 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
57065844 ATAATAATAAATA
1 ATAATAATAAATA
57065857 TAATAGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:57069208 original size:36 final size:36
Alignment explanation
Indices: 57069161--57069233 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
57069151 GTGAATGGGA
57069161 AACAAGAGATTCCAAGCTCATTGATTATCAAAAACT
1 AACAAGAGATTCCAAGCTCATTGATTATCAAAAACT
57069197 AACAAGAGATTCCAAGCTCATTGATTATCAAAAACT
1 AACAAGAGATTCCAAGCTCATTGATTATCAAAAACT
57069233 A
1 A
57069234 GTTCTTGAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (36 bp):
AACAAGAGATTCCAAGCTCATTGATTATCAAAAACT
Found at i:57071566 original size:94 final size:94
Alignment explanation
Indices: 57071405--57072503 Score: 1117
Period size: 94 Copynumber: 11.9 Consensus size: 94
57071395 GATTCCAGTC
* * * ** * *
57071405 CCCCTGAAGTTGTAGTGGGTTGGAATAAAGCTACAATGGCGAATCTTATCTCTTTGAAGTTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* *
57071470 TGGAGCAAGGTGAAGCTATAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * *
57071499 CCCCTAAAGTTGCAGTGGGTTAGAACT-AAGCTACCATAGTGAATATTATGTCCTTAAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAA-TGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
57071563 GTGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* ** * * *
57071593 CCCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* * *
57071657 TGGAGTAAAATGAAGTTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * *
57071686 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACCATAGCGAATCTTATCTCCCTAAAGTTGCAA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
*
57071751 TGGAGCAAGATGAAGCTACAAATACTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * ** * * * *
57071780 CCCCTGAAGTTGTAGTGGGTTAGAATGAAATTACCATAGTGAATCTTATCTCCTTTAAA-TTACA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCC-CTAAAGTTGCA
* *
57071844 GT-GAACAAGATGAAGCTACAAATCATATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * *
57071873 CCCTTGAAGTTGTAGTGGGTTGGAATAAAGCTACAACAGTGAATCTTATCTCCTTAAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
*
57071938 TGGAGAAAGATGAAGCTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * *
57071967 CACCTGAAGTTACAGTAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* * *
57072032 TGGAGAAAGATGAAGCTATAAATCCTACA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * ** * **
57072061 CTCCTGAAGTAGCAGTATGTTGGAATGAAGCTACAATAGCAAATCTTAAGTCCCTGAAA-TTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCT-AAAGTTGCA
*
57072125 GTGGAGCAAGATGAAGCTACAAATCCTGTA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * * *
57072155 CCCCTGAAGTTGCAGTGGGTT-G--TAAAGCTACAATAGCAAACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* * * *
57072217 TGAAGCAACATAAAGCTTCAAATCCTAT-
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * *
57072245 CCCTCTG-A-----A----GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCATGAAGTTGCA
1 CCC-CTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
* * * *
57072300 GTGGAGCAAGATAAAGGTACAAATTCTATG
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * *
57072330 CCCCT-ACA-TTGTAGTGGGTTGGAACGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
57072393 GTGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
** ** * * * * * * * * *
57072423 CCATTGAAGTTGTTGTAGGTTGGAATGGAA-TTATAACAACAAATCTCATCTCCTTAAAGTTGAA
1 CCCCTGAAGTTGCAGTGGGTTGGAAT-GAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
* *
57072487 ATTGAGCAAGATGAAGC
65 GTGGAGCAAGATGAAGC
57072504 CATGATACTA
Statistics
Matches: 848, Mismatches: 131, Indels: 52
0.82 0.13 0.05
Matches are distributed among these distances:
81 3 0.00
82 1 0.00
84 60 0.07
85 5 0.01
89 1 0.00
90 6 0.01
91 58 0.07
92 5 0.01
93 232 0.27
94 466 0.55
95 11 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (94 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:57071621 original size:44 final size:44
Alignment explanation
Indices: 57071480--57072175 Score: 189
Period size: 44 Copynumber: 14.9 Consensus size: 44
57071470 TGGAGCAAGG
* *
57071480 TGAAGCTATAAATCCTATACCCCTAAAGTTGCAGTGGGTTAGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
** ** * * **
57071524 CT-AAGCTACCATAGTGAATATTATGTCCTTAAAGTTGCAGTGGAGCAAG-A
1 -TGAAGCTA-C--A---AATCCTATACCCCTGAAGTTGCAGTGG-GTTAGAA
* *
57071574 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAATGGGTTGGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
** *
57071618 TGAAATTACCATAGCGA-CCT-TATCTCCCTGAAGTTGCAGTGGAG-TAAAA
1 TGAAGCTA-CA-A---ATCCTATA-C-CCCTGAAGTTGCAGTGG-GTTAGAA
* *
57071667 TGAAGTTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
* * * * **
57071711 TGAAACTACCATAGCGAATCTTAT-CTCCCTAAAGTTGCAATGGAGCAAG-A
1 TGAAGCTA-C--A---AATCCTATAC-CCCTGAAGTTGCAGTGG-GTTAGAA
* *
57071761 TGAAGCTACAAATACTATACCCCTGAAGTTGTAGTGGGTTAGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
** * * * * * ****
57071805 TGAAATTACCATAGTGAATCTTAT-CTCCTTTAAATTACAGTGAACAAG-A
1 TGAAGCTA-C--A---AATCCTATAC-CCCTGAAGTTGCAGTGGGTTAGAA
* * * *
57071854 TGAAGCTACAAATCATATACCCTTGAAGTTGTAGTGGGTTGGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
* * * * **
57071898 TAAAGCTACAACAGTGAATCT-TATCTCCTTAAAGTTGCAGTGGAGAAAG-A
1 TGAAGCTACAA-A-T---CCTATA-C-CCCTGAAGTTGCAGTGG-GTTAGAA
* * * *
57071948 TGAAGCTACAAATCCTATACACCTGAAGTTACAGTAGGTTGGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
* * **
57071992 TGAAGCTATAATAGCAAATCTTAT-CTCCCTAAAGTTGCAGTGGAGAAAG-A
1 TGAAGC-----TA-CAAATCCTATAC-CCCTGAAGTTGCAGTGG-GTTAGAA
* * * * ** *
57072042 TGAAGCTATAAATCCTACACTCCTGAAGTAGCAGTATGTTGGAA
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
* * * **
57072086 TGAAGCTACAATAGCAAATCT-TAAGTCCCTGAAATTGCAGTGGAGCAAG-A
1 TGAAGCTACAA-ATC----CTAT-A-CCCCTGAAGTTGCAGTGG-GTTAGAA
*
57072136 TGAAGCTACAAATCCTGTACCCCTGAAGTTGCAGTGGGTT
1 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTT
57072176 GTAAAGCTAC
Statistics
Matches: 462, Mismatches: 121, Indels: 138
0.64 0.17 0.19
Matches are distributed among these distances:
43 31 0.07
44 164 0.35
45 22 0.05
46 8 0.02
47 8 0.02
48 10 0.02
49 50 0.11
50 158 0.34
51 11 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (44 bp):
TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA
Found at i:57071722 original size:187 final size:188
Alignment explanation
Indices: 57071405--57072503 Score: 1157
Period size: 187 Copynumber: 5.9 Consensus size: 188
57071395 GATTCCAGTC
* * ** *
57071405 CCCCTGAAGTTGTAGTGGGTTGGAAT-AAAGCTACAATGGCGAATCTTATCTCTTTGAAGTTACA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
57071469 GTGGAGCAAGGTGAAGCTATAAATCCTATACCCCTAAAGTTGCAGTGGGTTAGAACT-AAGCTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA-TGAAGCTAC
* * *
57071533 CATAGTGAATATTATGTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
129 AATAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * *
57071593 CCCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * * *
57071657 TGGAGTAAAATGAAGTTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAA
* * * *
57071722 TAGCGAATCTTATCTCCCTAAAGTTGCAATGGAGCAAGATGAAGCTACAAATACTATA
131 TAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * * *
57071780 CCCCTGAAGTTGTAGTGGGTTAGAATGAAATTACCATAGTGAATCTTATCTCCTTTAAATTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * * *
57071845 T-GAACAAGATGAAGCTACAAATCATATACCCTTGAAGTTGTAGTGGGTTGGAATAAAGCTACAA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAA
* *
57071909 CAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGAAAGATGAAGCTACAAATCCTATA
131 TAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * *
57071967 CACCTGAAGTTACAGTAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * * * **
57072032 TGGAGAAAGATGAAGCTATAAATCCTACACTCCTGAAGTAGCAGTATGTTGGAATGAAGCTACAA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAA
** * *
57072097 TAGCAAATCTTAAGTC-CCTGAAA-TTGCAGTGGAGCAAGATGAAGCTACAAATCCTGTA
131 TAGTGAATCTT-A-TCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* *
57072155 CCCCTGAAGTTGCAGTGGGTT-G--T-AAAGCTACAATAGCAAACCTTATCTCCCTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
57072216 GTGAAGCAACATAAAGCTTCAAATCCTAT-CCCTCTG-A-----A----GTTGGAATGAAGCTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCC-CTGAAGTTGCAGTGGGTTGGAATGAAGCTAC
* * * * * *
57072270 AATAGTGAATCTTATCTCCATGAAGTTGCAGTGGAGCAAGATAAAGGTACAAATTCTATG
129 AATAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * *
57072330 CCCCT-ACA-TTGTAGTGGGTTGGAACGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
** ** * * *
57072393 GTGGAGCAAGATGAAGCTACAAATCCTATACCATTGAAGTTGTTGTAGGTTGGAATGGAA-TTAT
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-GAAGCTAC
* *** * * * *
57072457 AACAACAAATCTCATCTCCTTAAAGTTGAAATTGAGCAAGATGAAGC
129 AATAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGC
57072504 CATGATACTA
Statistics
Matches: 752, Mismatches: 132, Indels: 55
0.80 0.14 0.06
Matches are distributed among these distances:
173 2 0.00
174 17 0.02
175 64 0.09
177 58 0.08
178 6 0.01
179 1 0.00
184 5 0.01
185 57 0.08
186 1 0.00
187 365 0.49
188 164 0.22
189 10 0.01
190 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (188 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAA
TAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:57071923 original size:281 final size:281
Alignment explanation
Indices: 57071405--57072448 Score: 1126
Period size: 281 Copynumber: 3.8 Consensus size: 281
57071395 GATTCCAGTC
* * ** * *
57071405 CCCCTGAAGTTGTAGTGGGTTGGAAT-AAAGCTACAATGGCGAATCTTATCTCTTTGAAGTTACA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
* * * *
57071469 GTGGAGCAAGGTGAAGCTATAAATCCTATACCCCTAAAGTTGCAGTGGGTTAGAACT-AAGCTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAA-TGAAACTAC
* * * * *
57071533 CATAGTGAATATTATGT-CCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCC
129 AATAGCGAATCTTATCTCCCTGAAA-TTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCC
* * *
57071597 TGAAGTTGCAATGGGTTGGAATGAAA-TTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAGTGG
193 TGAAGTTGCAGTGGGTTGGAAT-AAAGCTACAATAGCGAACCTTATCTCCCTGAAGTTGCAGTGG
57071660 AGTAAAATGAAGTTACAAATCCTATA
257 AG-AAAATGAAGTTACAAATCCTATA
* *
57071686 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACCATAGCGAATCTTATCTCCCTAAAGTTGCAA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* * * *
57071751 TGGAGCAAGATGAAGCTACAAATACTATACCCCTGAAGTTGTAGTGGGTTAGAATGAAATTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAATGAAACTACAA
* * * * * * *
57071816 TAGTGAATCTTATCTCCTTTAAATTACAGT-GAACAAGATGAAGCTACAAATCATATACCCTTGA
131 TAGCGAATCTTATCTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGA
* * * * * *
57071880 AGTTGTAGTGGGTTGGAATAAAGCTACAACAGTGAATCTTATCTCCTTAAAGTTGCAGTGGAGAA
196 AGTTGCAGTGGGTTGGAATAAAGCTACAATAGCGAACCTTATCTCCCTGAAGTTGCAGTGGAGAA
*
57071945 AGATGAAGCTACAAATCCTATA
261 A-ATGAAGTTACAAATCCTATA
* * * * * *
57071967 CACCTGAAGTTACAGTAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
* * * * * ** * *
57072032 TGGAGAAAGATGAAGCTATAAATCCTACACTCCTGAAGTAGCAGTATGTTGGAATGAAGCTACAA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAATGAAACTACAA
* ** *
57072097 TAGCAAATCTTAAGTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTACAAATCCTGTACCCCTGA
131 TAGCGAATCTTATCTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGA
* *
57072162 AGTTGCAGTGGGTT-G--TAAAGCTACAATAGCAAACCTTATCTCCCTGAAGTTGCAGTGAAGCA
196 AGTTGCAGTGGGTTGGAATAAAGCTACAATAGCGAACCTTATCTCCCTGAAGTTGCAGTGGAG-A
* *
57072224 ACATAAAGCTT-CAAATCCTAT-
260 AAATGAAG-TTACAAATCCTATA
* * * *
57072245 CCCTCTG-A-----A----GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCATGAAGTTGCA
1 CCC-CTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTAAAGTTGCA
* * * * * * *
57072300 GTGGAGCAAGATAAAGGTACAAATTCTATGCCCCT-ACA-TTGTAGTGGGTTGGAACGAAACTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGA-AGTTGCAGTGGGTTAGAATGAAACTAC
* * **
57072363 AATAGCGAATTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCATT
129 AATAGCGAATCTTATCTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCT
** *
57072428 GAAGTTGTTGTAGGTTGGAAT
194 GAAGTTGCAGTGGGTTGGAAT
57072449 GGAATTATAA
Statistics
Matches: 643, Mismatches: 106, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
268 90 0.14
269 70 0.11
271 1 0.00
273 1 0.00
278 3 0.00
279 59 0.09
280 62 0.10
281 305 0.47
282 52 0.08
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (281 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTAAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTAGAATGAAACTACAA
TAGCGAATCTTATCTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGA
AGTTGCAGTGGGTTGGAATAAAGCTACAATAGCGAACCTTATCTCCCTGAAGTTGCAGTGGAGAA
AATGAAGTTACAAATCCTATA
Found at i:57072045 original size:50 final size:49
Alignment explanation
Indices: 57071914--57072052 Score: 123
Period size: 50 Copynumber: 2.9 Consensus size: 49
57071904 TACAACAGTG
*
57071914 AATCTTATCTCCTTAAAGTTGCAGTGGAGAAAGATGAAGC-----TACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGAAAGATGAAGCTATAATACA
* * * * * *
57071958 AATCCTATAC-ACCTGAAGTTACAGTAGGTTG-GA-ATGAAGCTATAATAGCA
1 AATCTTAT-CTCCCTAAAGTTGCAGT-GG-AGAAAGATGAAGCTATAATA-CA
57072008 AATCTTATCTCCCTAAAGTTGCAGTGGAGAAAGATGAAGCTATAA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGAAAGATGAAGCTATAA
57072053 ATCCTACACT
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
44 25 0.36
45 4 0.06
46 1 0.01
48 1 0.01
49 6 0.09
50 33 0.47
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (49 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGAAAGATGAAGCTATAATACA
Found at i:57072323 original size:84 final size:85
Alignment explanation
Indices: 57072079--57072434 Score: 322
Period size: 93 Copynumber: 4.0 Consensus size: 85
57072069 GTAGCAGTAT
* * ** * *
57072079 GTTGGAATGAAGCTACAATAGCAAATCTTAAGTCCCTGAAATTGCAGTGGAGCAAGATGAAGCTA
1 GTTGGAACGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
*
57072144 CAAATCCTGTACCC-CTGAA
66 CAAATCCTATACCCTCTGAA
*** * * * *
57072163 GTTGCAGTGGGTTGTAAAGCTACAATAGCAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAACAT
1 G-T----TGGAACG--AAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGAT
*
57072228 AAAGCTTCAAATCCTAT-CCCTCTGAA
59 AAAGCTACAAATCCTATACCCTCTGAA
* * * *
57072254 GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCATGAAGTTGCAGTGGAGCAAGATAAAGGTA
1 GTTGGAACGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
* * *
57072319 CAAATTCTATGCCCCTACATTGTAGTGG
66 CAAATCCTAT-ACCCT-C--TG-A---A
* * *
57072347 GTTGGAACGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTA
1 GTTGGAACGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
*
57072412 CAAATCCTATACCAT-TGAA
66 CAAATCCTATACCCTCTGAA
57072431 GTTG
1 GTTG
57072435 TTGTAGGTTG
Statistics
Matches: 221, Mismatches: 34, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
84 62 0.28
85 1 0.00
86 9 0.04
87 2 0.01
88 2 0.01
89 7 0.03
90 5 0.02
91 63 0.29
92 3 0.01
93 67 0.30
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (85 bp):
GTTGGAACGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
CAAATCCTATACCCTCTGAA
Found at i:57072738 original size:5 final size:5
Alignment explanation
Indices: 57072728--57072752 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57072718 TTCGTCCGAC
57072728 CCAAA CCAAA CCAAA CCAAA CCAAA
1 CCAAA CCAAA CCAAA CCAAA CCAAA
57072753 AAACATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAA
Found at i:57073049 original size:24 final size:25
Alignment explanation
Indices: 57073022--57073068 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
57073012 CCTGCAAAAA
57073022 AAAGAAAAAAACAAAAG-CAGAAAC
1 AAAGAAAAAAACAAAAGACAGAAAC
** *
57073046 AAAGAGTAAAACAGAAGACAGAA
1 AAAGAAAAAAACAAAAGACAGAA
57073069 TAGAGAAGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.70, C:0.11, G:0.17, T:0.02
Consensus pattern (25 bp):
AAAGAAAAAAACAAAAGACAGAAAC
Found at i:57073097 original size:12 final size:12
Alignment explanation
Indices: 57073082--57073106 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57073072 AGAAGCAGCA
57073082 AAAGAAAAAAAT
1 AAAGAAAAAAAT
57073094 AAAGAAAAAAAT
1 AAAGAAAAAAAT
57073106 A
1 A
57073107 TTTTGTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAGAAAAAAAT
Found at i:57074191 original size:28 final size:27
Alignment explanation
Indices: 57074160--57074212 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
57074150 CATTTTCCCC
*
57074160 CTTTAATTTACATTTTTTTATTTTTTTA
1 CTTTAATTTACA-TTTTATATTTTTTTA
* *
57074188 CTTTCATTTTCATTTTATATTTTTT
1 CTTTAATTTACATTTTATATTTTTT
57074213 ATTTTCATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (27 bp):
CTTTAATTTACATTTTATATTTTTTTA
Found at i:57077453 original size:3 final size:3
Alignment explanation
Indices: 57077380--57077444 Score: 76
Period size: 3 Copynumber: 21.7 Consensus size: 3
57077370 AAACATAAAC
** * * *
57077380 AAT AAT AAT AGC AAA AAT AGT AAT AAT AAT AAT AAT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
57077428 ACT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
57077445 GGTAATAATT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:57079449 original size:132 final size:132
Alignment explanation
Indices: 57079274--57079914 Score: 944
Period size: 132 Copynumber: 4.9 Consensus size: 132
57079264 CCAGGGAAAG
** * * *
57079274 TAAGATTTGCCATCTTCGACCTGCTTCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACC
1 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
*
57079339 TACTCCACTACTGCCTAGGGAGATAGGACTAATGACTTAAA-CATGCTTCTCCACTATCTTGGGA
66 TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATC-TGCTTCTCCACTATCTTGGGA
57079403 AGA
130 AGA
* * * * *
57079406 TAAGATTCACCATCTTCAATCTGTTCCGCTACTGCTTAGGGAGATAGAATCTACAATCTTCAACC
1 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
* *
57079471 TACTCCACTACTGTTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAA
66 TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATCTTGGGAA
57079536 GA
131 GA
* * * **
57079538 TAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGGGACAGAATCTGTAATCTTTGACC
1 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
* *
57079603 TATTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAA
66 TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATCTTGGGAA
57079668 GA
131 GA
* * * * *
57079670 TAAGATTCACTATCTTTGATCTGTTCCACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAACA
1 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
* * *
57079735 TACTCCACTACTGCTTAGGGAGATAGGACTAATAACTTAAATCTGCTTCTCCACTGTCTTGGAAA
66 TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATCTTGGGAA
57079800 GA
131 GA
* * *
57079802 TAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACC
1 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
* * **
57079867 TACTCCACTACTAC-TAGGGAGATAGGACTAATGGCTTCGATCTGCTTC
66 TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTC
57079915 GCTGTTAGTA
Statistics
Matches: 460, Mismatches: 48, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 30 0.07
132 429 0.93
133 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACC
TACTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATCTTGGGAA
GA
Found at i:57079467 original size:44 final size:44
Alignment explanation
Indices: 57079300--57079891 Score: 200
Period size: 44 Copynumber: 13.5 Consensus size: 44
57079290 CGACCTGCTT
* * * * **
57079300 CACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTC
1 CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATCTGTTC
* * *
57079344 CACTACTGCCTAGGGAGATAGGA-CT--AATGACTT-AAACATGCTTCTC
1 CACTACTGCTTAGGGAGATAGAATCTACAAT--CTTCAATC-TG--T-TC
* *
57079390 CACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCAATCTGTTC
1 CACTACTGCTTAGGG-AGAT-AGAATCTACAATCTTCAATCTGTTC
* * **
57079432 CGCTACTGCTTAGGGAGATAGAATCTACAATCTTCAACCTACTC
1 CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATCTGTTC
* * *
57079476 CACTACTGTTTAGGGAGATAGGA-CT--AATGGCTTAAATCTGCTTCTC
1 CACTACTGCTTAGGGAGATAGAATCTACAAT--CTTCAATCTG--T-TC
* * ** *
57079522 CACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTTGATCTGCTC
1 CACTACTGCTTAGGG-AGAT-AGAATCTACAATCTTCAATCTGTTC
* * ** ** * *
57079564 CACTACTGCTTAGGGGGACAGAATCTGTAATCTTTGACCTATTC
1 CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATCTGTTC
* *
57079608 CACTACTGCTTAGGGAGATAGGA-CT--AATGGCTTAAATCTGCTTCTC
1 CACTACTGCTTAGGGAGATAGAATCTACAAT--CTTCAATCTG--T-TC
* * **
57079654 CACTA-T-CTT-GGGAAGATAAGATTC-ACTATCTTTGATCTGTTC
1 CACTACTGCTTAGGG-AGAT-AGAATCTACAATCTTCAATCTGTTC
* * * **
57079696 CACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAA-CATACTC
1 CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATC-TGTTC
* * *
57079740 CACTACTGCTTAGGGAGATAGGA-CTA-ATAACTTAAATCTGCTTC
1 CACTACTGCTTAGGGAGATAGAATCTACA-ATCTTCAATCTG-TTC
* * * * **
57079784 TC-C-ACTGTCTT-GGAAAGATAAGATTC-ACCATCTTCGATCTACTC
1 -CACTACTG-CTTAGG-GAGAT-AGAATCTACAATCTTCAATCTGTTC
* * * **
57079828 CACTACTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTC
1 CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATCTGTTC
*
57079872 CACTACTAC-TAGGGAGATAG
1 CACTACTGCTTAGGGAGATAG
57079892 GACTAATGGC
Statistics
Matches: 404, Mismatches: 86, Indels: 117
0.67 0.14 0.19
Matches are distributed among these distances:
41 9 0.02
42 24 0.06
43 84 0.21
44 195 0.48
45 58 0.14
46 28 0.07
47 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
CACTACTGCTTAGGGAGATAGAATCTACAATCTTCAATCTGTTC
Found at i:57079971 original size:45 final size:46
Alignment explanation
Indices: 57079921--57080039 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 46
57079911 CTTCGCTGTT
* **
57079921 AGTACAAGAAGGCAAGATCTGCTATCTTCAG-TCTGCTCCATTGTC
1 AGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCACCGTC
* * * * *
57079966 AGTACAGGAAGGCAAG-GCTGGTTTCTTC-GATCTGCTTCGCCGTC
1 AGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCACCGTC
*
57080010 AGTACAGGAAGGCATGATCTGCTATCTTCA
1 AGTACAGGAAGGCAAGATCTGCTATCTTCA
57080040 TTGATCTGTT
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
43 1 0.02
44 34 0.58
45 24 0.41
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (46 bp):
AGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCACCGTC
Found at i:57080011 original size:44 final size:45
Alignment explanation
Indices: 57079901--57080038 Score: 154
Period size: 45 Copynumber: 3.1 Consensus size: 45
57079891 GGACTAATGG
* * *
57079901 CTTCGATCTGCTTCGCTGTTAGTACAAGAAGGCAAGATCTGCTAT
1 CTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTAT
* ** * *
57079946 CTTC-AGTCTGCTCCATTGTCAGTACAGGAAGGCAAG-GCTGGTTT
1 CTTCGA-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTAT
* * *
57079990 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATGATCTGCTAT
1 CTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTAT
57080035 CTTC
1 CTTC
57080039 ATTGATCTGT
Statistics
Matches: 74, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
44 35 0.47
45 39 0.53
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (45 bp):
CTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTAT
Found at i:57081297 original size:13 final size:13
Alignment explanation
Indices: 57081274--57081308 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
57081264 CCTTGGCCTC
57081274 TCTTTTT-TTTCT
1 TCTTTTTCTTTCT
57081286 TCTTTTTCTTTCT
1 TCTTTTTCTTTCT
57081299 TCTTTTTCTT
1 TCTTTTTCTT
57081309 CTTTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTCTTTCT
Found at i:57081299 original size:22 final size:22
Alignment explanation
Indices: 57081274--57081323 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
57081264 CCTTGGCCTC
57081274 TCTTTTTTTTCTTCTTTTTCTT
1 TCTTTTTTTTCTTCTTTTTCTT
*
57081296 TCTTCTTTTTCTTCTTTTTCTT
1 TCTTTTTTTTCTTCTTTTTCTT
57081318 T-TTTTT
1 TCTTTTT
57081324 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (22 bp):
TCTTTTTTTTCTTCTTTTTCTT
Found at i:57081323 original size:9 final size:9
Alignment explanation
Indices: 57081278--57081333 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
57081268 GGCCTCTCTT
57081278 TTTTTTCTTC
1 TTTTTT-TTC
57081288 TTTTTCTTTC
1 TTTTT-TTTC
*
57081298 TTCTTTTTC
1 TTTTTTTTC
*
57081307 TTCTTTTTC
1 TTTTTTTTC
*
57081316 TTTTTTTTG
1 TTTTTTTTC
57081325 TATTTTTTT
1 T-TTTTTTT
57081334 TATTGAATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
9 21 0.51
10 19 0.46
11 1 0.02
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:57084064 original size:19 final size:20
Alignment explanation
Indices: 57084035--57084086 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
57084025 CACTTTGTGA
* *
57084035 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
57084054 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
57084074 AAATG-AATGCAAA
1 AAATGTAATGCAAA
57084087 AAGATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:57086028 original size:14 final size:14
Alignment explanation
Indices: 57085996--57086040 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
57085986 TAGAACATTT
*
57085996 TAAAAGAATAA-AA
1 TAAAAAAATAATAA
*
57086009 TAAAAAATCTAATAA
1 TAAAAAA-ATAATAA
57086024 TAAAAAAATAATAA
1 TAAAAAAATAATAA
57086038 TAA
1 TAA
57086041 TAACAGTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 6 0.22
14 12 0.44
15 9 0.33
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (14 bp):
TAAAAAAATAATAA
Found at i:57086038 original size:17 final size:17
Alignment explanation
Indices: 57085997--57086043 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
57085987 AGAACATTTT
*
57085997 AAAAGAATAA-AAT-AA
1 AAAATAATAATAATAAA
*
57086012 AAAAT-CTAATAATAAA
1 AAAATAATAATAATAAA
57086028 AAAATAATAATAATAA
1 AAAATAATAATAATAA
57086044 CAGTAAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 7 0.27
17 9 0.35
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAATAATAATAATAAA
Found at i:57086324 original size:3 final size:3
Alignment explanation
Indices: 57086224--57086315 Score: 112
Period size: 3 Copynumber: 30.7 Consensus size: 3
57086214 AAAACTAAAC
** * * * *
57086224 AAT AAT AAT AGC AAA AAT AGT ATT AAT GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
57086272 AAT AAT AAT AAT AAT AAT AAC AAT AAT ACT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
57086316 GGTAATAATT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:57087090 original size:21 final size:22
Alignment explanation
Indices: 57087061--57087102 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
57087051 TTATATTTAA
* *
57087061 AAACGAAAATAAGAT-TAAAAG
1 AAACAAAAAAAAGATCTAAAAG
57087082 AAACAAAAAAAAGATCTAAAA
1 AAACAAAAAAAAGATCTAAAA
57087103 AGGGCAGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (22 bp):
AAACAAAAAAAAGATCTAAAAG
Found at i:57089352 original size:433 final size:433
Alignment explanation
Indices: 57087518--57090945 Score: 4315
Period size: 433 Copynumber: 7.9 Consensus size: 433
57087508 GTACAAATTT
* * * *
57087518 TACTCGATTGTGGTTTAAAACTGGATTTGAACGTAATGGTGATAAGTGAAAATGAGAAATGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
* * *
57087583 AAAATGCAATTGAACCAAAAATAAGGAAATGGGAAAAAATGGCAGTAAACTTGAATAGCTACTAA
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGA
* * * * * *
57087648 TGCATGAAAGAGAAAAAAATTGTTTTTAATTCTATTTCAGTGTGTTTTTCCCAAACCACCATTAT
131 TGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTAC
* * * *
57087713 AAGGTATTTACAAACTTTTCATATGCCAAATTTAGCATGATTACTCATAAGATTATGCCTAACAA
196 AAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAA
* * *
57087778 CTAACTAAAATCAGATTTTTTTTCTATTCATGGAGTTTAAAAAATTCACAATCTGATTTTTAATC
261 CCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTAATC
* * * * * *
57087843 AGCCACTAATTAAT-CAACCTTTCAATTTGGCTCCTTTTATTTCTTCCCGTTCTAATTTAGCCCA
326 AGCCACTAATT-CTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCCAA
* *
57087907 ATTCGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAGTCA
390 ATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
* * *
57087951 TACTCAATAGGGGTTTAAAAGTGGATTTGAACGTAA---TGA-AGGTGAAAAGGAGAAAGGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
* * * * * *
57088012 GAAAAGCAATTGAACCAAAAATAAGGAAGTGGGAAAAAATGGCAGTAAACTTGAAAAGCTTCTTA
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGA
* * *
57088077 TGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTACAATGTGTTTTTTCTAAGCCACCATTA-
131 TGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTAC
* ** ** * ** *
57088141 ATAGATGGTTATATTCTTTTTATATGCCAAATTTAGCATGATTCCTTATGAGATTATGCCTAACA
196 A-AGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACA
* * * *
57088206 ACCAACTAAAATAAGATTTTTTTTCTATTCATATAGTTTGACAAAA-TCATAATCTGATTTTTTT
260 ACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGA-AAAATTCACAATCTGA-TTTTTA
* * * *** *
57088270 ATCAGCCACTAATTCAGCCACTTTTCAATTTGTCCCCTTTTATTGCTTCAAATTTCAATTTAGCC
323 ATCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCC
* * * *
57088335 CAATTTTCTTGACTAAATGGGTTTTAGTTGAGCATGAAATTAATCA
388 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
* * * *** * *
57088381 TACTCTATTGAGGTTTAAAATTGGATTTGGTTGTAATGGTGATAAGTGAAAAGGTGAATA-AACT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAA-AGGACT
*
57088445 TAAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATTGGTAGTAAACTTGAATAGCTACT
65 TAAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAA-TGGCAGTAAACTTGAATAGCTACT
* * * * *
57088510 GATGCGTGAAAGAGAAAATAATTGTTTTTAATTATATTCCAGCGTGTTTTTTCCAAGTCACTATT
129 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATT
* * * * *
57088575 ACAAGGTATTTATACACTTTTCATCTGTCAAATTTAGCATTATTTCTCCTAAGATTATGCTTAAC
194 ACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAAC
* * * * *
57088640 AACCAACTAAAATTAGATTTTTTTTTCTATTCATGGAGTTTGAGAAATTCACAATATAATTTTTA
259 AACCAACTAAAATCAGA-TTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTA
* * *
57088705 ATCAGCCACTTATTCTGTAACTTTTCAATTTGGCCCTTTTTATTGCTTCCCGTTCCAATTTAGCC
323 ATCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCC
57088770 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
388 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
*
57088816 TACACGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGG-GTAAAGGACT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAG-AAAGGACT
* * ** *
57088880 TAAAAAGTAATTTAACCAAAAATAAGGAAATGG-AAAAAATGAAAGTAGACTTGAATAGCTACTG
65 TAAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTG
* * * *
57088944 ATGTGTGAAAGAGATAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCGAAGCCAGCATTA
130 ATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTA
* *
57089009 CAAAGTATTTATACACTTTTCATATGTCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACA
195 CAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACA
* * * * * *
57089074 ACCAATTAAAATTAGA-TTTTTTTCTATTTATAGAGTTTAAAAAACTCACAATCAGATTTTTAAT
260 ACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTAAT
* * * *
57089138 CAGCCACTAATTTTGTAACTTTTCAATTTGGCCCATTTTATTGCTTCCCATTCCAATTTAGCCAA
325 CAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCCAA
* *
57089203 ATTTGCTTGGCTAAATGTGGTTTAGTTGAGAATGAAATTAATCA
390 ATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
* * *
57089247 TACTCGATTGGGGTTTAAAAGTGGATTTGGAA-GTAAAGGTAATAAGTGAAAAGGAGAAAAGACT
1 TACTCGATTGGGGTTTAAAAGTGGATTT-GAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACT
* * * * * *
57089311 TAAAAAGAAATTGAACCAAAAGTAAGGAAATGGTAAAAAAATGACAATAAGCTTGAATAGCTATT
65 TAAAAAGCAATTGAACCAAAAATAAGGAAATGG-AAAAAAATGGCAGTAAACTTGAATAGCTACT
* *
57089376 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTGTTTTT-GAAGCCTCCAT
129 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGT-TTTTTCCAAGCCACCAT
* * * *
57089440 TACAAGGTATTAATAGACTTTTCATATGCCATATTGAGCATGATTCCTCCTAAGATTATGCCTAA
193 TACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAA
* * *
57089505 TAATCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTA
258 CAACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTA
* * * * * * * *
57089570 ATCAACCACTAATTATGAAAATTTT-AATTTGGTCCCTTCTATTGCTTTCTGTTCCAATTTAGCC
323 ATCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAG-C
* * *
57089634 CAAATTTGCTTGGCTAAATGCGATTTAGTTGAACATGAAATTAATCA
387 CAAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
* ** * * *
57089681 TACTCGATTGGGATTTAAAAGTAAATTTGAATGTAATGGTGATAGGTGAAAAGGAGAGAGGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
* *
57089746 -CAAAGAAATTGAACCAAAAATAAGGAAATGGAAAAAAAATGGCAGTAAACTTGAATAGCTA-TA
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGG-AAAAAAATGGCAGTAAACTTGAATAGCTACT-
** * *
57089809 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTTTAGTGTGTTTTTTCTAGGCCACCATT
129 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATT
* *
57089874 ACAAGTTATTCATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAAC
194 ACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAAC
* * * * *
57089939 AACCAACTAAAATCATATTTGTTTGT-TATTTATAGAGTTTGACAAATTCATAATCTGATTTTTA
259 AACCAACTAAAATCAGATTT-TTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTA
* * * * * *
57090003 ATCAGCCCCTATTTCTACAACTTTTCAATTTGACCCCTTTTATTTCTTCCTGTTCCAATTTAGCC
323 ATCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCC
* * *
57090068 TAATTTGTTTGGCTAAATGTGGTTTAGTTGAGCATGAAATTAATCA
388 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
** * * * * *
57090114 TACTTTATTTGGGTTTAAAAGTGGATTTAAACATAATGGCGATAGGTGAAAAGGAGAAAGGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
* * * ** *
57090179 AAAAGGCAATCGAACCAAAAATAAGGAACTGGCAAAAATTTGGCAGTAAACTTGAATATCTACTG
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGG-AAAAAAATGGCAGTAAACTTGAATAGCTACTG
* * * * * * * *
57090244 ATGTGTGAAAGAGAAAAAAAATGCTTTTAATTCTATTTCTA-TGTATTTTTTCCAAGTCAACATT
130 ATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTA-TTCCAGTGTGTTTTTTCCAAGCCACCATT
* *
57090308 ACAAGGTATTTATAC-CATTTTCATATACCAAATTTAGCATGATTCCTCCTAAGATTATTCCTAA
194 ACAAGGTATTTATACAC-TTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAA
* * * * * *
57090372 CAACCAACTAAAATCACATTTGTTTTCTATTCATAGAGTTTGACAAATTCAAAATCTAATTTTCA
258 CAACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTA
* * * * * * *
57090437 GTCAGCCCCTAATTCTGTAACTTTTCAATTTGGCCCCTTTTATTGCGTCTCATTCTAA-TTAGCC
323 ATCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCC
*
57090501 TAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
388 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
* * * *
57090547 TACTCAAATGGGGTTTAAAAGTGGATTTGAACATAATGATGATAAGTGAAAAGGAGAAAGGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
* * * * * *
57090612 -GAAAGACAATTGAACCAAAAATAAGGAACTAGAAAAAAGTCGACAGTAAACTTGAATAACTACT
66 AAAAAG-CAATTGAACCAAAAATAAGGAAATGGAAAAAAAT-GGCAGTAAACTTGAATAGCTACT
* * ** *
57090676 GATGCGTGATAGAGAAAAGAATTGCTTTTAATTCTATTTTAATGTGTTTTTTCCAAGCCACCATT
129 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATT
* *** * * * *
57090741 GCAAGGTATTTATACACTTTTCATATATAAAATTTAGCATGATTCTTCATAAGATGATGCCTAAT
194 ACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAAC
* ** * * *
57090806 GATTAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGATAAGTTCACAATTTGATTTTTAA
259 AACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTAA
* * * ** * * *
57090871 TCAGCCACTAATACTGCAACTTTTCAATTTGACCCATTTTATTGCTTCTTGTTCCAGTTTTGCCC
324 TCAGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCCA
57090936 AATTTGCTTG
389 AATTTGCTTG
57090946 TTTATTTAAA
Statistics
Matches: 2599, Mismatches: 359, Indels: 73
0.86 0.12 0.02
Matches are distributed among these distances:
428 1 0.00
429 234 0.09
430 134 0.05
431 227 0.09
432 23 0.01
433 1074 0.41
434 538 0.21
435 336 0.13
436 32 0.01
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT
AAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGA
TGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTAC
AAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAA
CCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGAAAAATTCACAATCTGATTTTTAATC
AGCCACTAATTCTGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCCAAA
TTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCA
Found at i:57089368 original size:866 final size:863
Alignment explanation
Indices: 57087518--57090945 Score: 4378
Period size: 867 Copynumber: 4.0 Consensus size: 863
57087508 GTACAAATTT
* * * *
57087518 TACTCGATTGTGGTTTAAAACTGGATTTGAACGTAATGGTGATAAGTGAAAATGAGAAATGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAAGACTT
* * *
57087583 AAAATGCAATTGAACCAAAAATAAGGAAATGGGAAAAAATGGCAGTAAACTTGAATAGCTACTAA
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGA
* * * * *
57087648 TGCATGAAAGAGAAAAAAATTGTTTTTAATTCTATTTCAGTGTGTTTTTCCCAAACCACCATTAT
131 TGCGTGAAAGAGAAAAAAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTAC
* * * *
57087713 AAGGTATTTACAAACTTTTCATATGCCAAATTTAGCATGATTACTCATAAGATTATGCCTAACAA
196 AAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAA
* * * * *
57087778 CTAACTAAAATCAGATTTTTTTTCTATTCATGGAGTTTAAAAAATTCACAATCTGATTTTTAATC
261 CCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATC
* * * * *
57087843 AGCCACTAATTAAT-CAACCTTTCAATTTGGCTCCTTTTATTTCTTCCCGTTCTAATTTAGCCCA
326 AGCCACTAATT-ATGTAACTTTTCAATTTGGC-CCTTTTATTGCTTCCCGTTCCAATTTAGCCAA
* * *
57087907 ATTCGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAGTCATACTCAATAGGGGTTTAAAAG
389 ATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGGTTTAAAAG
*
57087972 TGGATTTGAACGTAA---TGA-AGGTGAAAAGGAGAAAGGACTTGAAAAGCAATTGAACCAAAAA
454 TGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTT-AAAAGCAATTGAACCAAAAA
* * * * *
57088033 TAAGGAAGTGGGAAAAAATGGCAGTAAACTTGAAAAGCTTCTTATGCGTGAAAGAGAAAAGAATT
518 TAAGGAAAT-GGAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATT
* * **
57088098 GTTTTTAATTCTATTACAATGTGTTTTTTCTAAGCCACCATTA-ATAG-ATGGTTATATTCTTTT
582 GTTTTTAATTCTATTTCAATGTGTTTTTTCTAAGCCACCATTACAAAGTAT--TTATACACTTTT
* * * *
57088161 TATATGCCAAATTTAGCATGATTCCTTATGAGATTATGCCTAACAACCAACTAAAATAAGATTTT
645 CATATGCCAAATTTAGCATGATTCCTCATAAGATTATGCCTAACAACCAACTAAAATCAGATTTT
* * * * * *
57088226 TTTTCTATTCATATAGTTTGACAAAA-TCATAATCTGATTTTTTTATCAGCCACTAATTCAGCCA
710 TTTTCTATTCATAGAGTTT-AAAAAATTCACAATCTGA-TTTTTAATCAGCCACTAATTCTGCAA
* * ** * * *
57088290 CTTTTCAATTTGTCCCCTTTTATTGCTTCAAATTTCAATTTAGCCCAATTTTCTTGACTAAATG-
773 CTTTTCAATTTGACCCATTTTATTGCTTCCTATTCCAATTTAGCCCAATTTGCTTGGCTAAATGT
57088354 GGTTTTAGTTGAGCATGAAATTAATCA
838 GG-TTTAGTTGAGCATGAAATTAATCA
* * * *** *
57088381 TACTCTATTGAGGTTTAAAATTGGATTTGGTTGTAATGGTGATAAGTGAAAAGGTGAATAA-ACT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAA-AAGACT
*
57088445 TAAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATTGGTAGTAAACTTGAATAGCTACT
65 TAAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAA-TGGCAGTAAACTTGAATAGCTACT
* * * * *
57088510 GATGCGTGAAAGAGAAAATAATTGTTTTTAATTATATTCCAGCGTGTTTTTTCCAAGTCACTATT
129 GATGCGTGAAAGAGAAAAAAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATT
* * * * *
57088575 ACAAGGTATTTATACACTTTTCATCTGTCAAATTTAGCATTATTTCTCCTAAGATTATGCTTAAC
194 ACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAAC
* * * *
57088640 AACCAACTAAAATTAGATTTTTTTTTCTATTCATGGAGTTTGAGAAATTCACAATATAATTTTTA
259 AACCAACTAAAATCAGA-TTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTAATTTTTA
* *
57088705 ATCAGCCACTTATTCTGTAACTTTTCAATTTGGCCCTTTTTATTGCTTCCCGTTCCAATTTAGCC
323 ATCAGCCACTAATTATGTAACTTTTCAATTTGGCCC-TTTTATTGCTTCCCGTTCCAATTTAGCC
* *
57088770 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACACGATTGGGGTTTAAA
387 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGGTTTAAA
* *
57088835 AGTGGATTTGAACGTAATGGTGATAAGTGAAAAGG-GTAAAGGACTTAAAAAGTAATTTAACCAA
452 AGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAG-AAAGGACTT-AAAAGCAATTGAACCAA
* * * *
57088899 AAATAAGGAAATGGAAAAAATGAAAGTAGACTTGAATAGCTACTGATGTGTGAAAGAGATAAGAA
515 AAATAAGGAAATGGAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAA
* * * *
57088964 TTGTTTTTAATTCTATTCCAGTGTGTTTTTTCGAAGCCAGCATTACAAAGTATTTATACACTTTT
580 TTGTTTTTAATTCTATTTCAATGTGTTTTTTCTAAGCCACCATTACAAAGTATTTATACACTTTT
* * * *
57089029 CATATGTCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAATTAAAATTAGA-TTT
645 CATATGCCAAATTTAGCATGATTCCTCATAAGATTATGCCTAACAACCAACTAAAATCAGATTTT
* * * * *
57089093 TTTTCTATTTATAGAGTTTAAAAAACTCACAATCAGATTTTTAATCAGCCACTAATTTTGTAACT
710 TTTTCTATTCATAGAGTTTAAAAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACT
* * *
57089158 TTTCAATTTGGCCCATTTTATTGCTTCCCATTCCAATTTAGCCAAATTTGCTTGGCTAAATGTGG
775 TTTCAATTTGACCCATTTTATTGCTTCCTATTCCAATTTAGCCCAATTTGCTTGGCTAAATGTGG
*
57089223 TTTAGTTGAGAATGAAATTAATCA
840 TTTAGTTGAGCATGAAATTAATCA
* *
57089247 TACTCGATTGGGGTTTAAAAGTGGATTTGGAA-GTAAAGGTAATAAGTGAAAAGGAGAAAAGACT
1 TACTCGATTGGGGTTTAAAAGTGGATTT-GAACGTAATGGTGATAAGTGAAAAGGAGAAAAGACT
* * * * * *
57089311 TAAAAAGAAATTGAACCAAAAGTAAGGAAATGGTAAAAAAATGACAATAAGCTTGAATAGCTATT
65 TAAAAAGCAATTGAACCAAAAATAAGGAAATGG-AAAAAAATGGCAGTAAACTTGAATAGCTACT
* * *
57089376 GATGCGTGAAAGAGAAAAGAATTGTTTTTAATTCTATTCCAGTGTGTGTTTTT-GAAGCCTCCAT
129 GATGCGTGAAAGAGAAAAAAATTGTTTTTAATTCTATTCCAGTGTGT-TTTTTCCAAGCCACCAT
* * * *
57089440 TACAAGGTATTAATAGACTTTTCATATGCCATATTGAGCATGATTCCTCCTAAGATTATGCCTAA
193 TACAAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAA
* * *
57089505 TAATCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTA
258 CAACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTAATTTTTA
* * * * * *
57089570 ATCAACCACTAATTATGAAAATTTT-AATTTGGTCCCTTCTATTGCTTTCTGTTCCAATTTAGCC
323 ATCAGCCACTAATTATGTAACTTTTCAATTTGG-CCCTTTTATTGCTTCCCGTTCCAATTTAG-C
* * * * *
57089634 CAAATTTGCTTGGCTAAATGCGATTTAGTTGAACATGAAATTAATCATACTCGATTGGGATTTAA
386 CAAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGGTTTAA
** * * * * *
57089699 AAGTAAATTTGAATGTAATGGTGATAGGTGAAAAGGAGAGAGGACTTCAAAGAAATTGAACCAAA
451 AAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGCAATTGAACCAAA
*
57089764 AATAAGGAAATGGAAAAAAAATGGCAGTAAACTTGAATAGCTA-TAGATGCGTGAAAGAGAAAAG
516 AATAAGGAAATGG--AAAAAATGACAGTAAACTTGAATAGCTACT-GATGCGTGAAAGAGAAAAG
* * * *
57089828 AATTGTTTTTAATTCTATTTTAGTGTGTTTTTTCTAGGCCACCATTAC-AAGTTATTCATACACT
578 AATTGTTTTTAATTCTATTTCAATGTGTTTTTTCTAAGCCACCATTACAAAG-TATTTATACACT
* *
57089892 TTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCATAT
642 TTTCATATGCCAAATTTAGCATGATTCCTCATAAGATTATGCCTAACAACCAACTAAAATCAGAT
* * * * * * * *
57089957 TTGTTTGT-TATTTATAGAGTTTGACAAATTCATAATCTGATTTTTAATCAGCCCCTATTTCTAC
707 TT-TTTTTCTATTCATAGAGTTTAAAAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGC
* * * * *
57090021 AACTTTTCAATTTGACCCCTTTTATTTCTTCCTGTTCCAATTTAGCCTAATTTGTTTGGCTAAAT
771 AACTTTTCAATTTGACCCATTTTATTGCTTCCTATTCCAATTTAGCCCAATTTGCTTGGCTAAAT
57090086 GTGGTTTAGTTGAGCATGAAATTAATCA
836 GTGGTTTAGTTGAGCATGAAATTAATCA
** * * * * * *
57090114 TACTTTATTTGGGTTTAAAAGTGGATTTAAACATAATGGCGATAGGTGAAAAGGAGAAAGGACTT
1 TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAAGACTT
* * * ** *
57090179 AAAAGGCAATCGAACCAAAAATAAGGAACTGGCAAAAATTTGGCAGTAAACTTGAATATCTACTG
66 AAAAAGCAATTGAACCAAAAATAAGGAAATGG-AAAAAAATGGCAGTAAACTTGAATAGCTACTG
* * * * * * *
57090244 ATGTGTGAAAGAGAAAAAAAATGCTTTTAATTCTATTTCTA-TGTATTTTTTCCAAGTCAACATT
130 ATGCGTGAAAGAGAAAAAAATTGTTTTTAATTCTA-TTCCAGTGTGTTTTTTCCAAGCCACCATT
* *
57090308 ACAAGGTATTTATAC-CATTTTCATATACCAAATTTAGCATGATTCCTCCTAAGATTATTCCTAA
194 ACAAGGTATTTATACAC-TTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAA
* * * *
57090372 CAACCAACTAAAATCACATTTGTTTTCTATTCATAGAGTTTGACAAATTCAAAATCTAATTTTCA
258 CAACCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTAATTTTTA
* * * * * * *
57090437 GTCAGCCCCTAATTCTGTAACTTTTCAATTTGGCCCCTTTTATTGCGTCTCATTCTAA-TTAGCC
323 ATCAGCCACTAATTATGTAACTTTTCAATTTGG-CCCTTTTATTGCTTCCCGTTCCAATTTAGCC
* *
57090501 TAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAAATGGGGTTTAAA
387 AAATTTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGGTTTAAA
* * *
57090566 AGTGGATTTGAACATAATGATGATAAGTGAAAAGGAGAAAGGACTTGAAAGACAATTGAACCAAA
452 AGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAG-CAATTGAACCAAA
* * * *
57090631 AATAAGGAACTAGAAAAAAGTCGACAGTAAACTTGAATAACTACTGATGCGTGATAGAGAAAAGA
516 AATAAGGAAATGGAAAAAA-T-GACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGA
* * * * *
57090696 ATTGCTTTTAATTCTATTTTAATGTGTTTTTTCCAAGCCACCATTGCAAGGTATTTATACACTTT
579 ATTGTTTTTAATTCTATTTCAATGTGTTTTTTCTAAGCCACCATTACAAAGTATTTATACACTTT
*** * * ** **
57090761 TCATATATAAAATTTAGCATGATTCTTCATAAGATGATGCCTAATGATTAACTAAAATCAGATTT
644 TCATATGCCAAATTTAGCATGATTCCTCATAAGATTATGCCTAACAACCAACTAAAATCAGATTT
* * * * *
57090826 TTTTTCTATTCATAGAGTTTGATAAGTTCACAATTTGATTTTTAATCAGCCACTAATACTGCAAC
709 TTTTTCTATTCATAGAGTTTAAAAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAAC
* * * *
57090891 TTTTCAATTTGACCCATTTTATTGCTTCTTGTTCCAGTTTTGCCCAATTTGCTTG
774 TTTTCAATTTGACCCATTTTATTGCTTCCTATTCCAATTTAGCCCAATTTGCTTG
57090946 TTTATTTAAA
Statistics
Matches: 2223, Mismatches: 304, Indels: 72
0.86 0.12 0.03
Matches are distributed among these distances:
863 91 0.04
864 211 0.09
865 352 0.16
866 601 0.27
867 729 0.33
868 189 0.09
869 48 0.02
870 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (863 bp):
TACTCGATTGGGGTTTAAAAGTGGATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAAGACTT
AAAAAGCAATTGAACCAAAAATAAGGAAATGGAAAAAAATGGCAGTAAACTTGAATAGCTACTGA
TGCGTGAAAGAGAAAAAAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGCCACCATTAC
AAGGTATTTATACACTTTTCATATGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAA
CCAACTAAAATCAGATTTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATC
AGCCACTAATTATGTAACTTTTCAATTTGGCCCTTTTATTGCTTCCCGTTCCAATTTAGCCAAAT
TTGCTTGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGGTTTAAAAGTG
GATTTGAACGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGCAATTGAACCAAAAATAA
GGAAATGGAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTT
TTAATTCTATTTCAATGTGTTTTTTCTAAGCCACCATTACAAAGTATTTATACACTTTTCATATG
CCAAATTTAGCATGATTCCTCATAAGATTATGCCTAACAACCAACTAAAATCAGATTTTTTTTCT
ATTCATAGAGTTTAAAAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA
TTTGACCCATTTTATTGCTTCCTATTCCAATTTAGCCCAATTTGCTTGGCTAAATGTGGTTTAGT
TGAGCATGAAATTAATCA
Found at i:57095201 original size:18 final size:18
Alignment explanation
Indices: 57095178--57095216 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
57095168 TCAGTCGTGA
57095178 TCTCCCTCCCCTTCATCT
1 TCTCCCTCCCCTTCATCT
57095196 TCTCCCTCCCCTTCATCT
1 TCTCCCTCCCCTTCATCT
57095214 TCT
1 TCT
57095217 AGCTTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.54, G:0.00, T:0.41
Consensus pattern (18 bp):
TCTCCCTCCCCTTCATCT
Found at i:57100086 original size:17 final size:18
Alignment explanation
Indices: 57100054--57100087 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57100044 CAAAGTTGTG
*
57100054 ATAATTATACATTTAAAA
1 ATAATTAGACATTTAAAA
57100072 ATAATTAGA-ATTTAAA
1 ATAATTAGACATTTAAA
57100088 TTACTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATTAGACATTTAAAA
Found at i:57103917 original size:27 final size:26
Alignment explanation
Indices: 57103879--57103930 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
57103869 ACATCTAGAA
*
57103879 AAAAACATATAAATTATAAA-AAATTC
1 AAAAACATAT-AATTAAAAATAAATTC
*
57103905 AAAAATATGATAATTAAAAATAAATT
1 AAAAACAT-ATAATTAAAAATAAATT
57103931 AGTTGAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (26 bp):
AAAAACATATAATTAAAAATAAATTC
Found at i:57106229 original size:37 final size:38
Alignment explanation
Indices: 57106164--57106237 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
57106154 AATTAATTGA
*
57106164 TTTTTTAAAAATTTAAAAAATTCAAAAAATGTATAAAT
1 TTTTTTAAAAATTTAAAAAATTCAAAAAAGGTATAAAT
*
57106202 TTTTTTAAAAA-TTAAAAAATAT-TAAAAAGGTATAAA
1 TTTTTTAAAAATTTAAAAAAT-TCAAAAAAGGTATAAA
57106238 AATTATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 21 0.64
38 12 0.36
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (38 bp):
TTTTTTAAAAATTTAAAAAATTCAAAAAAGGTATAAAT
Found at i:57106252 original size:17 final size:18
Alignment explanation
Indices: 57106206--57106252 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
57106196 ATAAATTTTT
57106206 TTAAAAAT-TAAAAAATA
1 TTAAAAATATAAAAAATA
*
57106223 TTAAAAAGGTATAAAAATTA
1 TTAAAAA--TATAAAAAATA
57106243 -TAAAAATATA
1 TTAAAAATATA
57106253 TATTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 11 0.42
19 7 0.27
20 8 0.31
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
TTAAAAATATAAAAAATA
Found at i:57115137 original size:21 final size:21
Alignment explanation
Indices: 57115113--57115156 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
57115103 ATTTTTAAAA
57115113 AAATGAATTTTTAGA-ATTTTT
1 AAAT-AATTTTTAGATATTTTT
* *
57115134 AAATATTTTTTTGATATTTTT
1 AAATAATTTTTAGATATTTTT
57115155 AA
1 AA
57115157 TTTTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
AAATAATTTTTAGATATTTTT
Found at i:57132578 original size:18 final size:17
Alignment explanation
Indices: 57132557--57132591 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
57132547 TTATTATTAA
57132557 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
57132575 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
57132592 TCTTAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:57132698 original size:18 final size:17
Alignment explanation
Indices: 57132675--57132711 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
57132665 AATTATTATT
57132675 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
57132691 AAATATATGATTTAATA
1 AAATATATGATTTAATA
57132708 AAAT
1 AAAT
57132712 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:57132760 original size:61 final size:61
Alignment explanation
Indices: 57132572--57132762 Score: 178
Period size: 61 Copynumber: 3.2 Consensus size: 61
57132562 TTTTAATTAA
* *
57132572 AATATAT-ATTTTAATAAAATTCTTAACAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATGA-TTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
* * * * * * * * ** * *
57132633 AATATATGATACT-ATAAAA-T-ATAAT-TTAAGATAATTATTAT-TAAATATATTTTAATTAA
1 AATATATGAT-TTAATAAAATTCTTAATAATCA-AT-ATTCTTATATGAATTTACTAAAATCAT
57132692 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
57132753 AATATATGAT
1 AATATATGAT
57132763 AGTATAAAGT
Statistics
Matches: 96, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
58 3 0.03
59 32 0.33
60 16 0.17
61 41 0.43
62 4 0.04
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (61 bp):
AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
Found at i:57132818 original size:18 final size:17
Alignment explanation
Indices: 57132795--57132831 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
57132785 AATTATTATT
57132795 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
57132811 AAATATATGATTTAATA
1 AAATATATGATTTAATA
57132828 AAAT
1 AAAT
57132832 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:57132829 original size:59 final size:58
Alignment explanation
Indices: 57132538--57132829 Score: 166
Period size: 59 Copynumber: 4.9 Consensus size: 58
57132528 TAATCATATT
* *
57132538 TTAACATAATTATTATTAAATATATTTTAATTAAAATATAT-ATTTTAATAAAATTCTTAACA
1 TTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGA-TTTAAT-AAA-T-ATAATA
* * * * * * ** * * *
57132600 ATCAAT-ATTCTTATATGAATTTACTCAAATCATAATATATGATACT-ATAAAATATAAT-
1 TTAAATAATTATTAT-TAAATATATTTTAATTAAAATATATGAT-TTAAT-AAATATAATA
*
57132658 TTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATA
1 TTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAAT-AAA-T-ATAATA
* * * * * * ** * * *
57132720 ATCAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATAGT-ATAAAGTATAAT-
1 TTAAATAATTATTAT-TAAATATATTTTAATTAAAATATATGAT-TTAATAAA-TATAATA
57132778 TTGAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAA
1 TT-AAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAA
57132830 ATTTAAAATA
Statistics
Matches: 167, Mismatches: 49, Indels: 31
0.68 0.20 0.13
Matches are distributed among these distances:
58 5 0.03
59 65 0.39
60 34 0.20
61 56 0.34
62 7 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (58 bp):
TTAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAATATAATA
Found at i:57132841 original size:120 final size:120
Alignment explanation
Indices: 57132537--57132832 Score: 515
Period size: 120 Copynumber: 2.5 Consensus size: 120
57132527 TTAATCATAT
* *
57132537 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATAT-ATTTTAATAAAATTCTTAACAA
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGA-TTTAATAAAATTCTTAATAA
*
57132601 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
65 TCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
57132657 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
* *
57132722 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATAGTATAAAGTATAA
66 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
57132777 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTT-AAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
57132833 TAAAATAATT
Statistics
Matches: 169, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
120 166 0.98
121 3 0.02
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:57132943 original size:91 final size:91
Alignment explanation
Indices: 57132839--57133054 Score: 353
Period size: 91 Copynumber: 2.4 Consensus size: 91
57132829 AATTTAAAAT
* * * * *
57132839 AATTATTAGTAATAATTTTTCTTATATGAATTTGTATAATTTAATATAA-TAATTATTAAATATA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAA-TATTAAATATA
57132903 ATTTAATAATAATATATAATTTCATAA
65 ATTTAATAATAATATATAATTTCATAA
*
57132930 AATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
57132995 TTTAATAATAATATATAATTTCATAA
66 TTTAATAATAATATATAATTTCATAA
*
57133021 AATTCTTAATAATAAATATTCTTATATGAATTTA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTA
57133055 CTAAAATCAT
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 113 0.97
92 3 0.03
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
TTTAATAATAATATATAATTTCATAA
Found at i:57132966 original size:47 final size:47
Alignment explanation
Indices: 57132814--57133054 Score: 148
Period size: 47 Copynumber: 5.3 Consensus size: 47
57132804 TTAATTAAAA
* * * * *
57132814 TATATG-ATTTAATAAAATTT-AAAATAATTATTAGTAATAATTTTTCT
1 TATATGAATTT-ATATAATTTCATAA-AATTCTTAATAATAAATTTTCT
* * * ** * **
57132861 TATATGAATTTGTATAATTTAATATAATAATTATTAAATATAA-TTTAA
1 TATATGAATTTATATAATTTCATAAAATTCTTAAT-AATA-AATTTTCT
*
57132909 TA-AT-AA--TATATAATTTCATAAAATTCTTGATAATAAATTTTCT
1 TATATGAATTTATATAATTTCATAAAATTCTTAATAATAAATTTTCT
** * *
57132952 TATATGAATTTATATAA-TT--TAAAATAATTAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTCATAAAATTCTTAATAATAAAT-T-TTCT
* *
57132997 TA-AT-AATAATATATAATTTCATAAAATTCTTAATAATAAATATTCT
1 TATATGAAT-TTATATAATTTCATAAAATTCTTAATAATAAATTTTCT
57133043 TATATGAATTTA
1 TATATGAATTTA
57133055 CTAAAATCAT
Statistics
Matches: 146, Mismatches: 30, Indels: 36
0.69 0.14 0.17
Matches are distributed among these distances:
42 2 0.01
43 12 0.08
44 45 0.31
45 9 0.06
46 8 0.05
47 51 0.35
48 18 0.12
49 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (47 bp):
TATATGAATTTATATAATTTCATAAAATTCTTAATAATAAATTTTCT
Found at i:57132996 original size:16 final size:16
Alignment explanation
Indices: 57132966--57133014 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
57132956 TGAATTTATA
57132966 TAAT-TTAAA-ATAAT
1 TAATATTAAATATAAT
57132980 TAATATTAAATATAATT
1 TAATATTAAATATAA-T
*
57132997 TAATAATAATATATAAT
1 TAATATTAA-ATATAAT
57133014 T
1 T
57133015 TCATAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 4 0.13
15 5 0.17
16 4 0.13
17 11 0.37
18 6 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATTAAATATAAT
Found at i:57133010 original size:44 final size:44
Alignment explanation
Indices: 57132873--57133015 Score: 132
Period size: 44 Copynumber: 3.2 Consensus size: 44
57132863 TATGAATTTG
*
57132873 TATAATTTAATATAA-TAATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATA
** * * * *
57132917 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAAT-TTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATAATA
57132964 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
57133008 TATAATTT
1 TATAATTT
57133016 CATAAAATTC
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
43 3 0.04
44 33 0.43
45 7 0.09
46 7 0.09
47 21 0.28
48 5 0.07
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (44 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATA
Found at i:57133012 original size:18 final size:17
Alignment explanation
Indices: 57132971--57133020 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 17
57132961 TTATATAATT
*
57132971 TAAA-ATAA-TTAATAT
1 TAAATATAATTTAATAA
57132986 TAAATATAATTTAATAA
1 TAAATATAATTTAATAA
*
57133003 TAATATATAATTTCATAA
1 TAA-ATATAATTTAATAA
57133021 AATTCTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 4 0.13
16 4 0.13
17 9 0.30
18 13 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATATAATTTAATAA
Found at i:57133152 original size:14 final size:14
Alignment explanation
Indices: 57133133--57133172 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
57133123 TTGATTGCCA
57133133 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
57133147 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
57133161 GAAAAATGTTTT
1 GTAAAATGTTTT
57133173 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:57133185 original size:34 final size:35
Alignment explanation
Indices: 57133141--57133207 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
57133131 CAGTAAAATG
* *
57133141 TTTTCCGTAAAATGATTT-CTGAAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
* *
57133175 TTTTCTGTAAAATAATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTT
57133208 TTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
Found at i:57133193 original size:20 final size:20
Alignment explanation
Indices: 57133156--57133195 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57133146 CGTAAAATGA
**
57133156 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATAATTTACT
*
57133176 TTTCTGTAAAATAATTTACT
1 TTTCTGAAAAATAATTTACT
57133196 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATAATTTACT
Found at i:57140868 original size:18 final size:18
Alignment explanation
Indices: 57140804--57140885 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 18
57140794 AATGACTTTT
* *
57140804 TTTTTATAATTTTTAATATT
1 TTTTTATGATTTTT-ATA-A
* * *
57140824 TTTTTCTAATTTATTAGAA
1 TTTTTATGATTT-TTATAA
57140843 TTTATTAT-ATTATTTATAA
1 TTT-TTATGATT-TTTATAA
57140862 TTTTTATGATTTTTATAA
1 TTTTTATGATTTTTATAA
*
57140880 GTTTTA
1 TTTTTA
57140886 ATGAAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 16 0.31
19 17 0.33
20 17 0.33
21 2 0.04
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTTATGATTTTTATAA
Found at i:57140970 original size:10 final size:10
Alignment explanation
Indices: 57140957--57141175 Score: 60
Period size: 10 Copynumber: 22.4 Consensus size: 10
57140947 AATTTATTTG
57140957 ATTTTTAATA
1 ATTTTTAATA
*
57140967 ATTTTTAATG
1 ATTTTTAATA
* *
57140977 ATATTT-GTA
1 ATTTTTAATA
57140986 AGTTTTT-ATGA
1 A-TTTTTAAT-A
* *
57140997 TTTTTTTATA
1 ATTTTTAATA
57141007 A-TTTTAA-A
1 ATTTTTAATA
*
57141015 A-GTTTATATCA
1 ATTTTTA-AT-A
57141026 A-TTTTAAT-
1 ATTTTTAATA
57141034 A--TTTAATA
1 ATTTTTAATA
*
57141042 ATTCTTT-ATT
1 ATT-TTTAATA
57141052 ATTTTTAATAA
1 ATTTTTAAT-A
*
57141063 ATTTTT-ATG
1 ATTTTTAATA
*
57141072 ATTTTTTATA
1 ATTTTTAATA
*
57141082 AGTTTTTAAGA
1 A-TTTTTAATA
57141093 ATTTTT-ATA
1 ATTTTTAATA
* *
57141102 TTTTTTTATAA
1 ATTTTTAAT-A
*
57141113 AATTTTAA-A
1 ATTTTTAATA
*
57141122 TATTTTAAATA
1 -ATTTTTAATA
57141133 TATTTTT--TA
1 -ATTTTTAATA
*
57141142 CTTTTATAATTA
1 ATTTT-TAA-TA
57141154 A-TTTT-ATA
1 ATTTTTAATA
57141162 ATTTATTAA-A
1 ATTT-TTAATA
57141172 ATTT
1 ATTT
57141176 ATTATATTTA
Statistics
Matches: 157, Mismatches: 27, Indels: 50
0.67 0.12 0.21
Matches are distributed among these distances:
7 6 0.04
8 15 0.10
9 31 0.20
10 60 0.38
11 43 0.27
12 2 0.01
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:57141060 original size:20 final size:19
Alignment explanation
Indices: 57141035--57141099 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
57141025 AATTTTAATA
*
57141035 TTTAATAATTCTTTATTATT
1 TTTAATAATT-TTTATGATT
57141055 TTTAATAAATTTTTATGATT
1 TTTAAT-AATTTTTATGATT
* *
57141075 TTTTATAAGTTTTTAAGAATT
1 TTTAATAA-TTTTTATG-ATT
57141096 TTTA
1 TTTA
57141100 TATTTTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
19 2 0.05
20 26 0.68
21 10 0.26
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTAATAATTTTTATGATT
Found at i:57141096 original size:30 final size:31
Alignment explanation
Indices: 57141053--57141112 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
57141043 TTCTTTATTA
57141053 TTTTTAATAAATTTTTATGA-TTTTTTATAAG
1 TTTTTAATAAATTTTTAT-ATTTTTTTATAAG
*
57141084 TTTTTAA-GAATTTTTATATTTTTTTATAA
1 TTTTTAATAAATTTTTATATTTTTTTATAA
57141113 AATTTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 1 0.04
30 19 0.70
31 7 0.26
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (31 bp):
TTTTTAATAAATTTTTATATTTTTTTATAAG
Found at i:57141127 original size:30 final size:30
Alignment explanation
Indices: 57141062--57141120 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
57141052 ATTTTTAATA
**
57141062 AATTTTTATGA-TTTTTTATAAGTTTTTAAG
1 AATTTTTAT-ATTTTTTTATAAAATTTTAAG
57141092 AATTTTTATATTTTTTTATAAAATTTTAA
1 AATTTTTATATTTTTTTATAAAATTTTAA
57141121 ATATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (30 bp):
AATTTTTATATTTTTTTATAAAATTTTAAG
Found at i:57147956 original size:25 final size:22
Alignment explanation
Indices: 57147924--57147968 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 22
57147914 TAGTTGAGGA
57147924 AATGTTGGTATGATAGCTTAGCCT
1 AATGTTGGTATG-T-GCTTAGCCT
57147948 AATGCTTGGTATGTGCTTAGC
1 AATG-TTGGTATGTGCTTAGC
57147969 TTGAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 8 0.40
ACGTcount: A:0.22, C:0.13, G:0.27, T:0.38
Consensus pattern (22 bp):
AATGTTGGTATGTGCTTAGCCT
Found at i:57150444 original size:17 final size:18
Alignment explanation
Indices: 57150422--57150465 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
57150412 TAAGATGATT
57150422 AAAAATAAAT-AACTAAC
1 AAAAATAAATAAACTAAC
*
57150439 AAAAATAAATAAACTAAT
1 AAAAATAAATAAACTAAC
*
57150457 AAAGATAAA
1 AAAAATAAA
57150466 CAAATAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.18
Consensus pattern (18 bp):
AAAAATAAATAAACTAAC
Found at i:57164371 original size:23 final size:22
Alignment explanation
Indices: 57164328--57164371 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
57164318 TTCTAAGTCG
57164328 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
57164351 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
57164372 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:57164480 original size:45 final size:45
Alignment explanation
Indices: 57164416--57164504 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
57164406 AACAGATACT
* * *
57164416 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGTC
*
57164461 CGGTGGAATCAGCACATAGCAATAACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGT
57164505 TAGGTTCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGTC
Found at i:57164573 original size:51 final size:51
Alignment explanation
Indices: 57164511--57164644 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 51
57164501 ATGTTAGGTT
*
57164511 CACATAGTAGCCTGCACATAGTACTACACATGT-AACCATTACCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGAACCA-AACCATCCGATA
* * * * * * * *
57164562 TACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGAACCAAACCATCCGATA
* *
57164613 CGCATAGTAGCCTGCACCTAGTACTACACATG
1 CACATAGTAGCCTGCACATAGTACTACACATG
57164645 CGACTTATCA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
51 64 0.96
52 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGAACCAAACCATCCGATA
Found at i:57176362 original size:20 final size:19
Alignment explanation
Indices: 57176338--57176403 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
57176328 GATTCAATAA
57176338 AAAAACAAAAAAATCAAAAT
1 AAAAA-AAAAAAATCAAAAT
* *
57176358 CAAAAATAAAAAATCTAAAT
1 -AAAAAAAAAAAATCAAAAT
* *
57176378 AAAAATAAAAAATCTAAAT
1 AAAAAAAAAAAATCAAAAT
57176397 ATAAAAA
1 A-AAAAA
57176404 TGAAAATGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 20 0.49
20 16 0.39
21 5 0.12
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAAAAAAAAATCAAAAT
Found at i:57176381 original size:19 final size:19
Alignment explanation
Indices: 57176345--57176402 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 19
57176335 TAAAAAAACA
*
57176345 AAAAAATCAAAATCAAAAAT
1 AAAAAATCTAAAT-AAAAAT
57176365 AAAAAATCTAAATAAAAAT
1 AAAAAATCTAAATAAAAAT
57176384 AAAAAATCTAAATATAAAA
1 AAAAAATCTAAATA-AAAA
57176403 ATGAAAATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAAAATCTAAATAAAAAT
Found at i:57176404 original size:14 final size:14
Alignment explanation
Indices: 57176346--57176418 Score: 53
Period size: 13 Copynumber: 5.4 Consensus size: 14
57176336 AAAAAAACAA
*
57176346 AAAAATCAAAAT-C
1 AAAAATCAAAATAT
*
57176359 AAAAAT-AAAAAAT
1 AAAAATCAAAATAT
** *
57176372 CTAAATAAAAATA-
1 AAAAATCAAAATAT
*
57176385 AAAAATCTAAATAT
1 AAAAATCAAAATAT
*
57176399 AAAAATGAAAATGAT
1 AAAAATCAAAAT-AT
57176414 AAAAA
1 AAAAA
57176419 AAGAAAAAGA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
12 4 0.09
13 19 0.42
14 15 0.33
15 7 0.16
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (14 bp):
AAAAATCAAAATAT
Found at i:57177346 original size:48 final size:48
Alignment explanation
Indices: 57177275--57177370 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
57177265 AAGGAGAAGG
* *
57177275 GACCAAGGTGAAAATCCACAAAGGGCGCTTTGATTCCTAAAAAA-AAAA
1 GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGT-CTAAAAAATAAAA
*
57177323 GACCAAGGTGAAAACCCGCAAAGGGCGCTTTGAGTCTAAAAAATAAAA
1 GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGTCTAAAAAATAAAA
57177371 AAAGTAAACA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 8 0.18
48 36 0.82
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.16
Consensus pattern (48 bp):
GACCAAGGTGAAAACCCACAAAGGGCGCTTTGAGTCTAAAAAATAAAA
Found at i:57178072 original size:35 final size:35
Alignment explanation
Indices: 57178021--57178088 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
57178011 AAAGGCTGAA
* *
57178021 AATCTAAGAAGGAAGAGTCTAAATTAAGACTATAT
1 AATCTAAGAAGAAAGAGTCAAAATTAAGACTATAT
*
57178056 AATCTAAGAATAAAGAGTCAAAATTAAGACTAT
1 AATCTAAGAAGAAAGAGTCAAAATTAAGACTAT
57178089 CTCTTTGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25
Consensus pattern (35 bp):
AATCTAAGAAGAAAGAGTCAAAATTAAGACTATAT
Found at i:57178811 original size:88 final size:88
Alignment explanation
Indices: 57178655--57179413 Score: 991
Period size: 88 Copynumber: 8.6 Consensus size: 88
57178645 GAAACCACAA
* *
57178655 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTGCATTCCTACACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
57178720 CAGTGAAGCAGATCGAAGACACC
66 CAGTGAAGCAGATCGAAGACACC
* * ** * * * *
57178743 AGCCTTGCCTTCCTGGGTTGCAGCGGAGCAAGTTGAAAATAATAGATATTGTCTTCCTGCACCAA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
*
57178808 CAGTGAAGCAGATTGAAGACACC
66 CAGTGAAGCAGATCGAAGACACC
* * * * *
57178831 AGCCTTGCCTCCCTAGGTTGCAGCGGAACAGGTTAAAAATAGCAGATCTTGCCTTCTTGCACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
*
57178896 CAG-CAAGCAGATCGAAGACACC
66 CAGTGAAGCAGATCGAAGACACC
* * * *
57178918 AGCCTTACCTCCCTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
*
57178983 CAGCGAAGCAGATCGAAGACACC
66 CAGTGAAGCAGATCGAAGACACC
* * * *
57179006 AGTCTTCCCTCCTTGGGTTGCAGCGGAGCAAGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
** *
57179071 CAACGAAGCAGATCAAAGACACC
66 CAGTGAAGCAGATCGAAGACACC
* * * * * *
57179094 AGCCTTGCCTCCCTAGGTTGCAGTGGAGCAGGTTGAAAATAGAAAATCTTGCTTTCTTACACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
*
57179159 CAGTGAAGCAGATCGAAGACACT
66 CAGTGAAGCAGATCGAAGACACC
* * * **
57179182 AGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTATATTGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
* *
57179247 CAGTGGAGCAGATCGAAGACACT
66 CAGTGAAGCAGATCGAAGACACC
* * * * ** **
57179270 AGCCTTGCCTCCCTAGGTTGCAGCAGAGCAGGTTGAATATGGCAGATCTTGCCTTCCTGTA-TTA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
*
57179334 GCAGCGAAGCAGATCGAAGACACC
66 -CAGTGAAGCAGATCGAAGACACC
* ** *
57179358 AGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAAGCACCAGATCTTGCCTTC
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTC
57179414 TTCTATAAGC
Statistics
Matches: 586, Mismatches: 83, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
87 80 0.14
88 506 0.86
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (88 bp):
AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
CAGTGAAGCAGATCGAAGACACC
Found at i:57179135 original size:263 final size:263
Alignment explanation
Indices: 57178655--57179415 Score: 1038
Period size: 263 Copynumber: 2.9 Consensus size: 263
57178645 GAAACCACAA
* *
57178655 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTGCATTCCTACACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
* *
57178720 CAGTGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGGGTTGCAGCGGAGCAAGTTGAAAATAA
66 CAGTGAAGCAGATCGAAGACACCAGCCTT-CCCTCCTGGGTTGCAGCGGAGCAAGTTGAAAATAG
* * * * *
57178785 TAGATATTGTCTTCCTGCACCAACAGTGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTAGGTT
130 CAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTT
* * *
57178850 GCAGCGGAACAGGTTAAAAATAGCAGATCTTGCCTTCTTGCACCGACAG-CAAGCAGATCGAAGA
195 GCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTTACACCGACAGTCAAGCAGATCGAAGA
57178914 CACC
260 CACC
* * * *
57178918 AGCCTTACCTCCCTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
* *
57178983 CAGCGAAGCAGATCGAAGACACCAGTCTTCCCTCCTTGGGTTGCAGCGGAGCAAGTTGAAAATAG
66 CAGTGAAGCAGATCGAAGACACCAGCCTTCCCTCC-TGGGTTGCAGCGGAGCAAGTTGAAAATAG
* * * *
57179048 CAGATCTTGCCTTCCTACACCGACAACGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTT
130 CAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTT
* * * * *
57179113 GCAGTGGAGCAGGTTGAAAATAGAAAATCTTGCTTTCTTACACCGACAGTGAAGCAGATCGAAGA
195 GCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTTACACCGACAGTCAAGCAGATCGAAGA
*
57179178 CACT
260 CACC
* * * **
57179182 AGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTATATTGA
1 AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
* * * * * * * *
57179247 CAGTGGAGCAGATCGAAGACACTAGCCTTGCCTCCCTAGGTTGCAGCAGAGCAGGTTGAATATGG
66 CAGTGAAGCAGATCGAAGACACCAGCCTTCCCT-CCTGGGTTGCAGCGGAGCAAGTTGAAAATAG
* ** * *
57179312 CAGATCTTGCCTTCCTGTATTAGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
130 CAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTT
* ** *
57179377 ACAGCGGAGCAGGTTGAAAGCACCAGATCTTGCCTTCTT
195 GCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTT
57179416 CTATAAGCAA
Statistics
Matches: 431, Mismatches: 64, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
262 5 0.01
263 212 0.49
264 212 0.49
265 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (263 bp):
AGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGA
CAGTGAAGCAGATCGAAGACACCAGCCTTCCCTCCTGGGTTGCAGCGGAGCAAGTTGAAAATAGC
AGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTG
CAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTTACACCGACAGTCAAGCAGATCGAAGAC
ACC
Found at i:57179321 original size:44 final size:44
Alignment explanation
Indices: 57178834--57179411 Score: 165
Period size: 44 Copynumber: 13.2 Consensus size: 44
57178824 AGACACCAGC
* * *
57178834 CTTGCCTCCCTAGGTTGCAGCGGAACAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* * *** * * * * * *
57178878 CTTGCCT-TCTTGCACCGACAGC-AAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTGAAGATAGCAGAT
* * * * *
57178921 CTTACCTCCCTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* *** * * * * *
57178965 CTTGCCTTCCT-GCACCGACAGCGAAGCAGATCGAAGACACCAG-T
1 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTGAAGATAGCAGAT
* * * * *
57179009 CTTCCCTCCTTGGGTTGCAGCGGAGCAAGTTGAAAATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* **** * * * ** * * *
57179053 CTTGCCTTCCTACACCGACAACGAAGCAGATCAAAGACACCAG-C
1 CTTGCCTCCCTAGGTTG-CAGCGGAGCAGGTTGAAGATAGCAGAT
* * * *
57179097 CTTGCCTCCCTAGGTTGCAGTGGAGCAGGTTGAAAATAGAAAAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* * * **** * * * * * *
57179141 CTTGCTTTCTTACACCGACAGTGAAGCAGATCGAAGACA-CTAG-C
1 CTTGCCTCCCTAGGTTG-CAGCGGAGCAGGTTGAAGATAGC-AGAT
* *
57179185 CTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* ** * * * * *
57179229 CTTGCCTTCCTATATTGACAGTGGAGCAGATCGAAGACA-CTAG-C
1 CTTGCCTCCCTAGGTTG-CAGCGGAGCAGGTTGAAGATAGC-AGAT
* * *
57179273 CTTGCCTCCCTAGGTTGCAGCAGAGCAGGTTGAATATGGCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
* * * * * * * *
57179317 CTTGCCTTCCT-GTATTAGCAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTAG-GTT-GCAGCGGAGCAGGTTGAAGATAGCAGAT
* * * *
57179361 CTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAA-AGCACCAGAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGA-TAGCAGAT
57179405 CTTGCCT
1 CTTGCCT
57179412 TCTTCTATAA
Statistics
Matches: 353, Mismatches: 157, Indels: 48
0.63 0.28 0.09
Matches are distributed among these distances:
42 3 0.01
43 112 0.32
44 145 0.41
45 93 0.26
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (44 bp):
CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTGAAGATAGCAGAT
Found at i:57179511 original size:44 final size:43
Alignment explanation
Indices: 57179445--57179698 Score: 259
Period size: 44 Copynumber: 5.9 Consensus size: 43
57179435 TCGAAGCTAA
* * *
57179445 TAATCCTATCTCCTTGGACAGCAGTGGAATAGGTTGTAGAGTG
1 TAATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
* *
57179488 TGAATCCTATCTCCCTGGTCAGCAGTGGAATA----GAAAATTG
1 T-AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
* * *
57179528 TAAGTCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG
1 TAA-TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
* * * *
57179572 TGAGTCCTATCTCCCTAGACAGCAGTGGAACAGGTTGAAGATTA
1 T-AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
* * *
57179616 CATGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTG
1 TA-ATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
*
57179660 TAGA-CCTTATCTCCCT-GAGCAACAGTGGAATAGGTTGAA
1 TA-ATCC-TATCTCCCTGGA-CAGCAGTGGAATAGGTTGAA
57179699 AATTACAAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
39 2 0.01
40 32 0.18
43 6 0.03
44 135 0.77
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TAATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG
Found at i:57179657 original size:88 final size:86
Alignment explanation
Indices: 57179448--57179717 Score: 296
Period size: 88 Copynumber: 3.1 Consensus size: 86
57179438 AAGCTAATAA
* * * * *
57179448 TCCTATCTCCTTGGACAGCAGTGGAATAGGTTGTAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCT-GACAGCAG
* **
57179513 TGG-AA--TAGAAAATTGTAAG
65 TGGAAAGGTTGAAAATTACAAG
* * *
57179532 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGACAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCT-GACAGCAG
* *
57179597 TGGAACAGGTTGAAGATTACATG
65 TGGAA-AGGTTGAAAATTACAAG
* * *
57179620 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGT-AGACCTTATCTCCCTGAGCAACA
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCC-TATCTCCCTGA-CAGCA
*
57179684 GTGGAATAGGTTGAAAATTACAAA
64 GTGGAA-AGGTTGAAAATTACAAG
*
57179708 TCTTATCTCC
1 TCCTATCTCC
57179718 ATAAGCAATA
Statistics
Matches: 155, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
84 59 0.38
85 1 0.01
86 1 0.01
87 6 0.04
88 88 0.57
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (86 bp):
TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGACAGCAGT
GGAAAGGTTGAAAATTACAAG
Found at i:57179725 original size:44 final size:43
Alignment explanation
Indices: 57179532--57179732 Score: 134
Period size: 44 Copynumber: 4.6 Consensus size: 43
57179522 AAATTGTAAG
* ** * *** *
57179532 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAG
1 TCTTATCTCCCTAG-CAACAGTGGAATAGGTTGAAAATTACAAA
* * * * **
57179576 TCCTATCTCCCTAGACAGCAGTGGAACAGGTTGAAGATTACATG
1 TCTTATCTCCCTAG-CAACAGTGGAATAGGTTGAAAATTACAAA
* * * ** *
57179620 TCCTATCTCCCTGGACAGCAGTGGAATAGGTT-AAAGATTGTAGA
1 TCTTATCTCCCTAG-CAACAGTGGAATAGGTTGAAA-ATTACAAA
*
57179664 CCTTATCTCCCTGAGCAACAGTGGAATAGGTTGAAAATTACAAA
1 TCTTATCTCCCT-AGCAACAGTGGAATAGGTTGAAAATTACAAA
* *
57179708 TCTTATCTCCATAAGCAATAGTGGA
1 TCTTATCTCCCT-AGCAACAGTGGA
57179733 GCAGATCGAA
Statistics
Matches: 127, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
43 2 0.02
44 121 0.95
45 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTAGCAACAGTGGAATAGGTTGAAAATTACAAA
Found at i:57179744 original size:132 final size:128
Alignment explanation
Indices: 57179492--57179744 Score: 278
Period size: 132 Copynumber: 1.9 Consensus size: 128
57179482 AGAGTGTGAA
* * **
57179492 TCCTATCTCCCTGGTCAGCAGTGGAATAGAAAATTGTAAGTCTTATCTCCCTGGTCAGTAGTGGA
1 TCCTATCTCCCTGGACAGCAGTGGAATAGAAAATTGTAAGCCTTATCTCCCTGGTCAACAGTGGA
* *** * * * * *
57179557 ATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGACAGCAGTGGAACAGGTTGAAGATTACATG
66 ATAGGTTGAAAATTACAAATCCTATCTCCATAGACAACAGTGGAACAGATCGAAGATTACATG
57179620 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGT-AGACCTTATCTCCCTGAG-CAAC
1 TCCTATCTCCCTGGACAGCAGTGGAATA-G--AAA-ATTGTAAG-CCTTATCTCCCTG-GTCAAC
* * *
57179683 AGTGGAATAGGTTGAAAATTACAAATCTTATCTCCATA-AGCAATAGTGGAGCAGATCGAAGA
60 AGTGGAATAGGTTGAAAATTACAAATCCTATCTCCATAGA-CAACAGTGGAACAGATCGAAGA
57179745 CGTGAATTTT
Statistics
Matches: 102, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
128 27 0.26
129 1 0.01
131 6 0.06
132 67 0.66
133 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (128 bp):
TCCTATCTCCCTGGACAGCAGTGGAATAGAAAATTGTAAGCCTTATCTCCCTGGTCAACAGTGGA
ATAGGTTGAAAATTACAAATCCTATCTCCATAGACAACAGTGGAACAGATCGAAGATTACATG
Found at i:57179878 original size:88 final size:88
Alignment explanation
Indices: 57179776--57180161 Score: 497
Period size: 88 Copynumber: 4.4 Consensus size: 88
57179766 CGAAGTAGAT
*
57179776 ACTAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
1 ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCA-
*
57179841 CT-ACAGTGAAGCAGATCGAAGAC
65 CTGACAGCGAAGCAGATCGAAGAC
* * * * *
57179864 ACTAGCCTTGCCTCCCTGGGTTGTAGTGGAGTAGGATGAAAATAGCAGATCTTGCCTTCTTGCAC
1 ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
57179929 TGACAGCGAAGCAGATCGAAGAC
66 TGACAGCGAAGCAGATCGAAGAC
* * * * * *
57179952 ACTAGCCTTGCCTCTCTGGGTTGCAGCGGAGCAGGTTGAAGATAGCAAATCTTGCCTTCTTGTAT
1 ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
** *
57180017 TGACAATGAAGCAGATCGAAAAC
66 TGACAGCGAAGCAGATCGAAGAC
* * * * * *
57180040 ACTAGCCTTGCCTCCTTTGGTTGTAGCAGAGCAGGTT-AAAGATGGCAGATCTTGCCTTCCTGTA
1 ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAA-ATAGCAGATCTTGCCTTCCTGCA
* ** *
57180104 TTGGTAGCGAAGCAAATCGAAGAC
65 CTGACAGCGAAGCAGATCGAAGAC
*
57180128 ACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAG
1 ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAG
57180162 TTGCAATAGA
Statistics
Matches: 257, Mismatches: 39, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
87 4 0.02
88 253 0.98
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (88 bp):
ACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
TGACAGCGAAGCAGATCGAAGAC
Found at i:57179962 original size:44 final size:44
Alignment explanation
Indices: 57179914--57180052 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
57179904 AATAGCAGAT
*
57179914 CTTGCCTTCTTGCACTGACAGCGAAGCAGATCGAAGACACTAGC
1 CTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACACTAGC
** * * * * * **
57179958 CTTGCC-TCTCTGGGTTG-CAGCGGAGCAGGTTGAAGATAGCAAAT
1 CTTGCCTTCT-TGCATTGACAGCGAAGCAGATCGAAGACA-CTAGC
* ** *
57180002 CTTGCCTTCTTGTATTGACAATGAAGCAGATCGAAAACACTAGC
1 CTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACACTAGC
57180046 CTTGCCT
1 CTTGCCT
57180053 CCTTTGGTTG
Statistics
Matches: 69, Mismatches: 22, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
43 20 0.29
44 32 0.46
45 17 0.25
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCTTGCATTGACAGCGAAGCAGATCGAAGACACTAGC
Found at i:57180263 original size:44 final size:45
Alignment explanation
Indices: 57180184--57180598 Score: 172
Period size: 44 Copynumber: 9.6 Consensus size: 45
57180174 GGATCGCATT
* * * *
57180184 AGGTCTTATCTCCCTGAAGTTGTAGCGGAGTAGACTGAATA-AGC
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * *
57180228 AGGTTTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGC
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
** * * ** **
57180273 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * * * ** * *
57180318 A-ATCCTATCTCCCTAAAGTTACAGCGGAGTGGATTAAAATGATAG-
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAA-GATAGC
** * ** *
57180363 A--TCTTATCTCTTTGAGGTTGCA-AAGAGCAGA-TCG--CAT--C
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGC
* * * *
57180401 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCG--CAT--C
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGC
* * *
57180441 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATA-AGC
1 AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* *
57180485 AGGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGC
1 AGGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * * ** **
57180530 -GAATCTTATCTCCCT-AAGGTTGTAGTGGAGCAGATTAAAGCCAAT
1 AG-GTCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACTGAAGATAGC
*
57180575 A-ATCTTATCTCCCTGAAGTTGCAG
1 AGGTCTTATCTCCCTGAAGTTGCAG
57180599 CAGAACGGAT
Statistics
Matches: 285, Mismatches: 66, Indels: 40
0.73 0.17 0.10
Matches are distributed among these distances:
38 1 0.00
39 2 0.01
40 55 0.19
41 8 0.03
42 2 0.01
43 7 0.02
44 135 0.47
45 72 0.25
46 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (45 bp):
AGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
Found at i:57180406 original size:40 final size:40
Alignment explanation
Indices: 57180361--57180464 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
57180351 TTAAAATGAT
* *
57180361 AGATCTTATCTCTTTGAGGTTGCAAAGAGCAGATCGCATC
1 AGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCGCATC
*
57180401 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
1 AGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCGCATC
* *
57180441 A-AGTCTTATCTCCCTAAAGTTGCA
1 AGA-TCTTATCTCTCTGAAGTTGCA
57180465 GTGGAGCAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.02
40 57 0.98
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (40 bp):
AGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCGCATC
Found at i:57180546 original size:213 final size:211
Alignment explanation
Indices: 57180233--57180735 Score: 550
Period size: 213 Copynumber: 2.4 Consensus size: 211
57180223 TAAGCAGGTT
* * * *
57180233 TTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTAT-CTCCCTGAAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-A-AGCAAGTCTTATCCT-CCTGAAGTTGCA
* * * ** **
57180297 GTGGAGCAGA-TTAAAGCCAATAATCCTATCTCCCTAAAGTTACAGCGGAGTGGATTAAA-ATGA
63 GTGGGGCAGACTGAAAGCC-AGAATCCTATCTCCCTAAAGTTACAGCGGAGCAGATTAAAGACAA
** * * **
57180360 TAGATCTTATCTCTTTGAGGTTGCA-AAGAGCAGATC-GCATCAGATCTTATCTCTCTGAAGTTG
127 TA-ATCTTATCTCCCTGAAGTTGCAGAAGAACAGATCAAAAT--GATCTTATCTCTCTGAAGTTG
*
57180423 CAGAGAGCAGATCGCATCAAGTC
189 CAAAGAGCAGATCGCATCAAGTC
* *
57180446 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATAAGCAGGTCTTATCCTCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-AAGCAAGTCTTATCCTCCTGAAGTTGCAGT
* * * ** * *
57180511 GGGGCAGACTGAAGATGGC-GAATCTTATCTCCCTAAGGTTGTAGTGGAGCAGATTAAAGCCAAT
65 GGGGCAGACTGAA-A-GCCAGAATCCTATCTCCCTAAAGTTACAGCGGAGCAGATTAAAGACAAT
* * *
57180575 AATCTTATCTCCCTGAAGTTGCAGCAGAACGGATTAAAATGATCTTATCTCTCTGAAGTTGCAAA
128 AATCTTATCTCCCTGAAGTTGCAGAAGAACAGATCAAAATGATCTTATCTCTCTGAAGTTGCAAA
57180640 GAGCAGATCGCATCAAGTC
193 GAGCAGATCGCATCAAGTC
* * * * *
57180659 TTATCTCCCTGAGGTTGCAGCGGAGTAGACTGGGAAAGCAAGTCTTATCCTTCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAAAGCAAGTCTTATCCTCCTGAAGTTGCAGT
57180724 GGGGCAGACTGA
65 GGGGCAGACTGA
57180736 GAATAGCAAA
Statistics
Matches: 244, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
212 30 0.12
213 197 0.81
214 13 0.05
215 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (211 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
GGGCAGACTGAAAGCCAGAATCCTATCTCCCTAAAGTTACAGCGGAGCAGATTAAAGACAATAAT
CTTATCTCCCTGAAGTTGCAGAAGAACAGATCAAAATGATCTTATCTCTCTGAAGTTGCAAAGAG
CAGATCGCATCAAGTC
Found at i:57180703 original size:257 final size:256
Alignment explanation
Indices: 57180186--57180735 Score: 761
Period size: 257 Copynumber: 2.1 Consensus size: 256
57180176 ATCGCATTAG
* * * *
57180186 GTCTTATCTCCCTGAAGTTGTAGCGGAGTAGACTGAATAAGCAGGTTTTATCCCCCTGAAGTTGC
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATAAGCAGGTCTTATCCCCCTGAAGTTGC
57180251 AGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA
66 AGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA
* ** * *
57180316 ATAATCCTATCTCCCTAAAGTTACAGCGGAGTGGATTAAAATGATAGATCTTATCTCTTTGAGGT
131 ATAATCCTATCTCCCTAAAGTTACAGCAGAACGGATTAAAA-GATAGATCTTATCTCTCTGAAGT
* * *
57180381 TGCAAAGAGCAGATCGCATCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAA
195 TGCAAAGAGCAGATCGCATCAGATCTTATCTCCCTGAAGTTGCAGAGAGCAGATCGAAGCAA
* *
57180443 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATAAGCAGGTCTTATCCTCCTGAAGTTGC
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATAAGCAGGTCTTATCCCCCTGAAGTTGC
* *
57180508 AGTGGGGCAGACTGAAGATGGCGAATCTTATCTCCCT-AAGGTTGTAGTGGAGCAGATTAAAGCC
66 AGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGCC
* * *
57180572 AATAATCTTATCTCCCTGAAGTTGCAGCAGAACGGATT-AAA-AT-GATCTTATCTCTCTGAAGT
130 AATAATCCTATCTCCCTAAAGTTACAGCAGAACGGATTAAAAGATAGATCTTATCTCTCTGAAGT
* * * *
57180634 TGCAAAGAGCAGATCGCATCA-AGTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACTGGGAAAGC
195 TGCAAAGAGCAGATCGCATCAGA-TCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-T-CG-AAGC
57180698 AA
255 AA
* *
57180700 GTCTTATC-CTTCTGAAGTTGCAGTGGGGCAGACTGA
1 GTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTGA
57180736 GAATAGCAAA
Statistics
Matches: 260, Mismatches: 26, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
252 1 0.00
253 58 0.22
254 8 0.03
255 1 0.00
256 7 0.03
257 185 0.71
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (256 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAATAAGCAGGTCTTATCCCCCTGAAGTTGC
AGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA
ATAATCCTATCTCCCTAAAGTTACAGCAGAACGGATTAAAAGATAGATCTTATCTCTCTGAAGTT
GCAAAGAGCAGATCGCATCAGATCTTATCTCCCTGAAGTTGCAGAGAGCAGATCGAAGCAA
Found at i:57180720 original size:44 final size:45
Alignment explanation
Indices: 57180186--57180750 Score: 163
Period size: 44 Copynumber: 13.1 Consensus size: 45
57180176 ATCGCATTAG
* * *
57180186 GTCTTATCTCCCTGAAGTTGTAGCGGAGTAGACT--GAATAAGCAG
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAAT-AGCAA
* * * * *
57180230 GTTTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGA-AGATGGCAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGA-ATAGCAA
* * *
57180275 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T--TAA-AGCCAATA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAG-C-A-A
* * * * ** * *
57180319 ATCCTATCTCCCTAAAGTTACAGCGGAGTGGA-TTAAAAT-G-ATA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCA-A
** * ** * *
57180362 GATCTTATCTCTTTGAGGTTGCA-AAGAGCAGA-T-CGCAT--C-A
1 G-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
* * * *
57180402 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCAT--CAA
1 G-TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
* * *
57180443 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT--GAATAAGCAG
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAAT-AGCAA
* * *
57180487 GTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGA-AGATGGCGAA
1 GTCTTATCTC-CCTGAAGTTGCAGCGGAGCAGACTGAGA-ATAGC-AA
* * *
57180533 -TCTTATCTCCCT-AAGGTTGTAGTGGAGCAGA-T--TAA-AGCCAATA
1 GTCTTATCTCCCTGAA-GTTGCAGCGGAGCAGACTGAGAATAG-C-A-A
* * * * * *
57180576 ATCTTATCTCCCTGAAGTTGCAGCAGAACGGA-TTAAAAT-G--A
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
* ** * *
57180617 -TCTTATCTCTCTGAAGTTGCA-AAGAGCAGA-T-CGCAT--CAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
* * *
57180656 GTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACTGGGAA-AGCAA
1 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
* * *
57180700 GTCTTATC-CTTCTGAAGTTGCAGTGGGGCAGACTGAGAATAGCAA
1 GTCTTATCTC-CCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
*
57180745 ATCTTA
1 GTCTTA
57180751 CTTCCCTAGC
Statistics
Matches: 401, Mismatches: 76, Indels: 87
0.71 0.13 0.15
Matches are distributed among these distances:
38 2 0.00
39 8 0.02
40 96 0.24
41 21 0.05
42 9 0.02
43 17 0.04
44 165 0.41
45 71 0.18
46 12 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGAATAGCAA
Found at i:57182194 original size:16 final size:16
Alignment explanation
Indices: 57182174--57182220 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
57182164 TTAGTCTTTC
57182174 TTTTATTTTTATTTA-
1 TTTTATTTTTATTTAG
*
57182189 TGTTTATTTCCTATTTAG
1 T-TTTATTT-TTATTTAG
*
57182207 TTTTGTTTTTATTT
1 TTTTATTTTTATTT
57182221 CAATTTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 1 0.04
16 12 0.46
17 12 0.46
18 1 0.04
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.74
Consensus pattern (16 bp):
TTTTATTTTTATTTAG
Found at i:57189561 original size:10 final size:9
Alignment explanation
Indices: 57189541--57189605 Score: 52
Period size: 8 Copynumber: 7.8 Consensus size: 9
57189531 AATATAAATT
*
57189541 TTTTCAAAA
1 TTTTAAAAA
57189550 TTATTAAAAA
1 TT-TTAAAAA
57189560 TTTTAAAAA
1 TTTTAAAAA
57189569 -TTTAAAAA
1 TTTTAAAAA
*
57189577 --CTAAAAA
1 TTTTAAAAA
57189584 --TTAAAAA
1 TTTTAAAAA
57189591 -TTTAAAAA
1 TTTTAAAAA
*
57189599 TTATAAA
1 TTTTAAA
57189606 TATATAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
7 12 0.24
8 15 0.31
9 14 0.29
10 8 0.16
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:57189572 original size:8 final size:8
Alignment explanation
Indices: 57189553--57189605 Score: 65
Period size: 8 Copynumber: 6.6 Consensus size: 8
57189543 TTCAAAATTA
57189553 TTAAAAATT
1 TTAAAAA-T
57189562 TTAAAAAT
1 TTAAAAAT
57189570 TTAAAAA-
1 TTAAAAAT
*
57189577 CTAAAAA-
1 TTAAAAAT
57189584 TTAAAAAT
1 TTAAAAAT
57189592 TTAAAAAT
1 TTAAAAAT
57189600 TATAAA
1 T-TAAA
57189606 TATATAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
7 12 0.30
8 17 0.43
9 11 0.28
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (8 bp):
TTAAAAAT
Found at i:57189591 original size:7 final size:7
Alignment explanation
Indices: 57189552--57189606 Score: 56
Period size: 7 Copynumber: 7.3 Consensus size: 7
57189542 TTTCAAAATT
57189552 ATTAAAA
1 ATTAAAA
57189559 ATTTTAAAA
1 A--TTAAAA
57189568 ATTTAAAA
1 A-TTAAAA
*
57189576 ACTAAAA
1 ATTAAAA
57189583 ATTAAAA
1 ATTAAAA
57189590 ATTTAAAA
1 A-TTAAAA
*
57189598 ATTATAA
1 ATTAAAA
57189605 AT
1 AT
57189607 ATATAAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
7 20 0.48
8 15 0.36
9 7 0.17
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (7 bp):
ATTAAAA
Found at i:57189606 original size:15 final size:15
Alignment explanation
Indices: 57189552--57189606 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 15
57189542 TTTCAAAATT
57189552 ATTAAAAATTTTAAAA
1 ATTAAAAA-TTTAAAA
*
57189568 ATTTAAAAA-CTAAAA
1 A-TTAAAAATTTAAAA
57189583 ATTAAAAATTTAAAA
1 ATTAAAAATTTAAAA
*
57189598 ATTATAAAT
1 ATTAAAAAT
57189607 ATATAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 7 0.21
15 19 0.56
16 1 0.03
17 7 0.21
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
ATTAAAAATTTAAAA
Found at i:57189614 original size:15 final size:15
Alignment explanation
Indices: 57189552--57189614 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
57189542 TTTCAAAATT
*
57189552 ATTAAAAATTTTAAAA
1 ATTAAAAA-TATAAAA
*
57189568 ATTTAAAAA-CTAAAA
1 A-TTAAAAATATAAAA
*
57189583 ATTAAAAATTTAAAA
1 ATTAAAAATATAAAA
* *
57189598 ATTATAAATATATAA
1 ATTAAAAATATAAAA
57189613 AT
1 AT
57189615 ATTACTAACT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.17
15 25 0.62
16 1 0.03
17 7 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (15 bp):
ATTAAAAATATAAAA
Found at i:57191400 original size:38 final size:38
Alignment explanation
Indices: 57191349--57191423 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
57191339 AGAAAATCTG
57191349 CCATTTACTTCCAAACTGGAATTGTAAGTCATTTCTTT
1 CCATTTACTTCCAAACTGGAATTGTAAGTCATTTCTTT
*
57191387 CCATTTACTTCCAAATTGGAATTGTAAGTCATTTCTT
1 CCATTTACTTCCAAACTGGAATTGTAAGTCATTTCTT
57191424 AAAAAATCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.43
Consensus pattern (38 bp):
CCATTTACTTCCAAACTGGAATTGTAAGTCATTTCTTT
Found at i:57192848 original size:23 final size:22
Alignment explanation
Indices: 57192796--57192873 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
57192786 TCATGACATT
*
57192796 TAATGAA-ATAATAAC-ATAAA
1 TAATGAATAAAATAACAATAAA
* *
57192816 TAATAAAATAAAATGACAATAATA
1 TAAT-GAATAAAATAACAATAA-A
* *
57192840 TAATGAATACAATAATAATAAA
1 TAATGAATAAAATAACAATAAA
*
57192862 TAATGAAAAAAA
1 TAATGAATAAAA
57192874 ATATTCAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 4 0.09
21 2 0.04
22 17 0.38
23 17 0.38
24 5 0.11
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.24
Consensus pattern (22 bp):
TAATGAATAAAATAACAATAAA
Found at i:57194694 original size:14 final size:14
Alignment explanation
Indices: 57194675--57194702 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
57194665 TAATTAATGG
57194675 ATTTATTTTTGTTT
1 ATTTATTTTTGTTT
57194689 ATTTATTTTTGTTT
1 ATTTATTTTTGTTT
57194703 GGGTCGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (14 bp):
ATTTATTTTTGTTT
Found at i:57207041 original size:19 final size:19
Alignment explanation
Indices: 57207001--57207043 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
57206991 AATTCTGTAG
*
57207001 AGAAATGAAAATAAATCTA
1 AGAAATGAAAATAAATCAA
*
57207020 AGAAATGAAGATAAAAT-AA
1 AGAAATGAAAAT-AAATCAA
57207039 AGAAA
1 AGAAA
57207044 GATGTAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.16
Consensus pattern (19 bp):
AGAAATGAAAATAAATCAA
Found at i:57210008 original size:16 final size:16
Alignment explanation
Indices: 57209987--57210022 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
57209977 TAAAGAAAAC
57209987 ATATATAAA-TATAAA
1 ATATATAAATTATAAA
57210002 TATATATAAATTATAAA
1 -ATATATAAATTATAAA
57210019 ATAT
1 ATAT
57210023 GTGTTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATATAAATTATAAA
Found at i:57211974 original size:45 final size:45
Alignment explanation
Indices: 57211906--57212026 Score: 179
Period size: 45 Copynumber: 2.7 Consensus size: 45
57211896 TTAGTTTGCC
* *
57211906 CCACTGCAACTTTAGGGGGATAAGACTTGCTTTCTTGAGTCTGCT
1 CCACTGCATCTTTAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* * *
57211951 CCACTGCATCTTTAGGGAAATAAGACTCGCTTTCTTGGGTCTGCT
1 CCACTGCATCTTTAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* *
57211996 CCACTGCATCTTCAGGGAGATAAGACCTGCT
1 CCACTGCATCTTTAGGGAGATAAGACTTGCT
57212027 ATGATCTGCT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (45 bp):
CCACTGCATCTTTAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
Found at i:57212258 original size:217 final size:217
Alignment explanation
Indices: 57211990--57212391 Score: 599
Period size: 217 Copynumber: 1.9 Consensus size: 217
57211980 CTTTCTTGGG
* * * * *
57211990 TCTGCTCCACTGCATCTTCAGGGAGATAAGACCTGCTATGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACCTGATACGATCTACTCTCTGCAACTTCAGAGAG
** * * * *
57212055 ATAAGATCTATCACTTTAATCTTCTCTACTGCAATTTCAAGGAGATAGGATTATTGGCTTTAATC
66 ATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCAAGGAGATAGAATTATTGACTTTAATC
* **
57212120 TGCTCCACTGAAACCTCAGGGAGATAAGATTCGCCATCTTGGGTCTGCTCCACTGTGACTTCAGG
131 TACTCCACTGAAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTGTGACTTCAGG
57212185 AGGATAAGACTTGCTTACTCAA
196 AGGATAAGACTTGCTTACTCAA
* *
57212207 TCTGCTCCACTGCAACTTCAATGAGATAAGA-CTAGATGCGATCTACTCTCTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACCT-GATACGATCTACTCTCTGCAACTTCAGAGA
* *
57212271 GATAAGATCTATCACTTTAATCCACTCCATTGCAACTTCAGGGAGATAGAATTATTGACTTTAAT
65 GATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCAAGGAGATAGAATTATTGACTTTAAT
* * *
57212336 CTACTCCATTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTG
130 CTACTCCACTGAAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTG
57212392 CAATAGACCT
Statistics
Matches: 163, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
216 2 0.01
217 161 0.99
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (217 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGACCTGATACGATCTACTCTCTGCAACTTCAGAGAG
ATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCAAGGAGATAGAATTATTGACTTTAATC
TACTCCACTGAAACCTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTGTGACTTCAGG
AGGATAAGACTTGCTTACTCAA
Found at i:57212291 original size:173 final size:173
Alignment explanation
Indices: 57211945--57212318 Score: 388
Period size: 173 Copynumber: 2.2 Consensus size: 173
57211935 CTTTCTTGAG
* * * **
57211945 TCTGCTCCACTGCATCTTTAGGGAAATAAGACTCGCTTTCTTGGGTCTGCTCCACTGCATCTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCCATCTTGGGTCTGCTCCACTGCATCTTCA
* * **
57212010 GGGAGATAAGACCTGCTATGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTATCACTTTAAT
66 GGGAGATAAGACCTGCTATAATCTGCTCACTGCAACTTCAGAGAGATAAGATCTATCACTGCAAT
* * * **
57212075 CTTCTCTACTGCAATTTCAAGGAGATAGGATTATTGGCTTTAA
131 CTACTCTACTGCAACTTCAAGGAGATAAGATTATTCACTTTAA
* * * *
57212118 TCTGCTCCACTGAAACCTCAGGGAGATAAGATTCGCCATCTTGGGTCTGCTCCACTGTGA-CTTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCCATCTTGGGTCTGCTCCACTG-CATCTTC
* *
57212182 A-GGAGGATAAGACTTGCTTACTCAATCTGCTCCACTGCAACTTCA-ATGAGATAAGA-CTA-GA
65 AGGGA-GATAAGACCTGC-TA-T-AATCTGCT-CACTGCAACTTCAGA-GAGATAAGATCTATCA
*
57212243 -TGCGATCTACTCT-CTGCAACTTC-AGAGAGATAAGATCTA-TCACTTTAA
124 CTGCAATCTACTCTACTGCAACTTCAAG-GAGATAAGAT-TATTCACTTTAA
** *
57212291 TCCACTCCATTGCAACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
57212319 GAATTATTGA
Statistics
Matches: 166, Mismatches: 26, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
172 5 0.03
173 113 0.68
174 14 0.08
175 2 0.01
176 11 0.07
177 21 0.13
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (173 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCCATCTTGGGTCTGCTCCACTGCATCTTCA
GGGAGATAAGACCTGCTATAATCTGCTCACTGCAACTTCAGAGAGATAAGATCTATCACTGCAAT
CTACTCTACTGCAACTTCAAGGAGATAAGATTATTCACTTTAA
Found at i:57212309 original size:44 final size:44
Alignment explanation
Indices: 57212257--57212367 Score: 163
Period size: 44 Copynumber: 2.5 Consensus size: 44
57212247 ATCTACTCTC
*
57212257 TGCAACTTCAGAGAGATAAGATCTA-TCACTTTAATCCACTCCAT
1 TGCAACTTCAGGGAGATAAGAT-TATTCACTTTAATCCACTCCAT
* *
57212301 TGCAACTTCAGGGAGAT-AGAATTATTGACTTTAATCTACTCCAT
1 TGCAACTTCAGGGAGATAAG-ATTATTCACTTTAATCCACTCCAT
57212345 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
57212368 CGCCATCTTC
Statistics
Matches: 61, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
43 4 0.07
44 55 0.90
45 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTATTCACTTTAATCCACTCCAT
Found at i:57213043 original size:14 final size:14
Alignment explanation
Indices: 57213024--57213055 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
57213014 TTCATTCAAT
*
57213024 CAATATTTGGATGA
1 CAATATTTGGAAGA
57213038 CAATATTTGGAAGA
1 CAATATTTGGAAGA
57213052 CAAT
1 CAAT
57213056 CTTAGACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (14 bp):
CAATATTTGGAAGA
Found at i:57216702 original size:18 final size:18
Alignment explanation
Indices: 57216679--57216721 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
57216669 ACCCAATCTA
**
57216679 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
57216697 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
57216715 AACCCAA
1 AACCCAA
57216722 TCATAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:57226196 original size:3 final size:3
Alignment explanation
Indices: 57226188--57226241 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
57226178 TACTATGATT
57226188 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
57226236 TTA TTA
1 TTA TTA
57226242 CATACGCATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:57226500 original size:28 final size:28
Alignment explanation
Indices: 57226466--57226523 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
57226456 CATATACATC
57226466 TATTTTTATAATATTCATACATATTTTT
1 TATTTTTATAATATTCATACATATTTTT
57226494 TATTTTTATAATATTCATACATATTTTT
1 TATTTTTATAATATTCATACATATTTTT
57226522 TA
1 TA
57226524 AAATATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (28 bp):
TATTTTTATAATATTCATACATATTTTT
Found at i:57227766 original size:36 final size:35
Alignment explanation
Indices: 57227713--57227799 Score: 147
Period size: 36 Copynumber: 2.5 Consensus size: 35
57227703 TATTCATTAG
* *
57227713 AAAAAATATATAAATATATTTACATGTACATATAT
1 AAAAAATAAATATATATATTTACATGTACATATAT
57227748 AAAAAAATAAATATATATATTTACATGTACATATAT
1 -AAAAAATAAATATATATATTTACATGTACATATAT
57227784 AAAAAATAAATATATA
1 AAAAAATAAATATATA
57227800 CATATATATA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 16 0.33
36 33 0.67
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (35 bp):
AAAAAATAAATATATATATTTACATGTACATATAT
Found at i:57227846 original size:29 final size:29
Alignment explanation
Indices: 57227739--57227858 Score: 88
Period size: 29 Copynumber: 4.2 Consensus size: 29
57227729 TATTTACATG
* *
57227739 TACATATATA-AAAAAATAAATATATATATT
1 TACATATATATAAAAAATAAA-A-AAATAAT
* * * *
57227769 TACATGTACATATATAAA-AAATAAAT-AT
1 TACATATATATA-AAAAATAAAAAAATAAT
**
57227797 ATACATATATATAAATTATAAAAAAATAAT
1 -TACATATATATAAAAAATAAAAAAATAAT
*
57227827 TACATATATATAAAAAAT--AATAATAAT
1 TACATATATATAAAAAATAAAAAAATAAT
57227854 TACAT
1 TACAT
57227859 TCTTGAAATT
Statistics
Matches: 70, Mismatches: 15, Indels: 13
0.71 0.15 0.13
Matches are distributed among these distances:
27 13 0.19
28 3 0.04
29 36 0.51
30 10 0.14
31 4 0.06
32 4 0.06
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (29 bp):
TACATATATATAAAAAATAAAAAAATAAT
Found at i:57227851 original size:27 final size:26
Alignment explanation
Indices: 57227778--57227858 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 26
57227768 TTACATGTAC
57227778 ATATATAAAAAAT-AAAT-ATATACAT
1 ATATATAAAAAATAAAATAAT-TACAT
*
57227803 ATATATAAATTATAAAAAAATAATTACAT
1 ATATATAAA--A-AATAAAATAATTACAT
57227832 ATATATAAAAAATAATAATAATTACAT
1 ATATATAAAAAATAA-AATAATTACAT
57227859 TCTTGAAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
25 9 0.19
26 4 0.08
27 13 0.27
28 2 0.04
29 18 0.38
30 2 0.04
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (26 bp):
ATATATAAAAAATAAAATAATTACAT
Found at i:57230414 original size:36 final size:36
Alignment explanation
Indices: 57230374--57230449 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
57230364 TGAAACATAG
*
57230374 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
57230410 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
57230447 AAA
1 AAA
57230450 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:57231011 original size:23 final size:22
Alignment explanation
Indices: 57230968--57231025 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
57230958 AAAGGGTATC
* *
57230968 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
57230989 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
57231012 TGCATATCATATCT
1 TACAAATCATATCT
57231026 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Done.