Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 182 of 222
Found at i:58281516 original size:26 final size:26
Alignment explanation
Indices: 58281499--58281548 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
58281489 TAGTAGTGAT
*
58281499 GCAGCAACGCTGCCAATAACAGTAAC
1 GCAGCAAAGCTGCCAATAACAGTAAC
*
58281525 GCAGCAAAGCTGCCAGTAACAGTA
1 GCAGCAAAGCTGCCAATAACAGTA
58281549 TATGTGGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.22, T:0.12
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAATAACAGTAAC
Found at i:58281744 original size:27 final size:27
Alignment explanation
Indices: 58281722--58282126 Score: 453
Period size: 27 Copynumber: 15.0 Consensus size: 27
58281712 AGGGGTATAA
* *
58281722 CAGTAATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
58281749 TAGTTATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
58281776 C-GATCATTTTACCCTTCGGGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
**
58281803 TGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
58281830 CAGTCATTTTACCCTTCGAAGATATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
58281857 CAGTCATTTTACCCTTCCAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
58281884 CAGTTATTTTACCC-TCTGGGGGTATTT
1 CAGTCATTTTACCCTTC-GAGGGTATTT
* *
58281911 CAGTTATTTTACCCTTCAAGGGTA-TT
1 CAGTCATTTTACCCTTCGAGGGTATTT
**
58281937 CTAGTCATTTTA-CCTTTTAGGGGTATTT
1 C-AGTCATTTTACCCTTCGA-GGGTATTT
** *
58281965 TGGTCATTTTACCCTT-AAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
58281991 CTGTCATTTTACTCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
58282018 CAGTTATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
58282045 CGGTCATTTAACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
58282072 CGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
58282099 CGGTTATTTTACCATTCG-GAGGTATTT
1 CAGTCATTTTACCCTTCGAG-GGTATTT
58282126 C
1 C
58282127 TTTTATATTT
Statistics
Matches: 325, Mismatches: 43, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
26 33 0.10
27 283 0.87
28 9 0.03
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:58287689 original size:62 final size:62
Alignment explanation
Indices: 58287606--58287751 Score: 161
Period size: 62 Copynumber: 2.4 Consensus size: 62
58287596 TGTGGTACTG
* * * * *
58287606 ATAC-TTCA-AAATTGTCCAATGTGGTACCTGAACAACCAATTGCTGTATTATTTGGCACTT
1 ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGATGTATTATTTAGCACAT
* * * * * * *
58287666 GTACTTTCATAGAATGTCCAATGTGGTACATGAGCTATCAATTTATGTATTATTTAGTACAT
1 ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGATGTATTATTTAGCACAT
*
58287728 ATATTTTCATAAAATGTCCAATGT
1 ATACTTTCATAAAATGTCCAATGT
58287752 AATATGTGTA
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
60 3 0.04
61 4 0.06
62 62 0.90
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (62 bp):
ATACTTTCATAAAATGTCCAATGTGGTACATGAACAACCAATTGATGTATTATTTAGCACAT
Found at i:58290033 original size:92 final size:91
Alignment explanation
Indices: 58289871--58290066 Score: 248
Period size: 92 Copynumber: 2.1 Consensus size: 91
58289861 TGTTCCATAT
* * * * * *
58289871 TAATACAAAGATTGATAGTTCAAGTATCACATTGAACATTTTCAAAGTATAAGTACTACATTGGA
1 TAATACAAAAATTAATAATTCAAGTACCACACTGAACATTTTCAAAGTATAAGTACCACATTGGA
* *
58289936 TATTTTATGAAAAGTATAAGTACCAAA
66 CATTTTATGAAAA-TACAAGTACCAAA
* * * * *
58289963 TAATACAAAAATTAATAATTCAAGTACCACACTGGATATTTTCAAAGTATAGGTGCCAGATTGGA
1 TAATACAAAAATTAATAATTCAAGTACCACACTGAACATTTTCAAAGTATAAGTACCACATTGGA
*
58290028 CATTTTATGAAAATACAATTACCAAA
66 CATTTTATGAAAATACAAGTACCAAA
*
58290054 TAATACACAAATT
1 TAATACAAAAATT
58290067 GATAGTTTAA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
91 23 0.26
92 66 0.74
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (91 bp):
TAATACAAAAATTAATAATTCAAGTACCACACTGAACATTTTCAAAGTATAAGTACCACATTGGA
CATTTTATGAAAATACAAGTACCAAA
Found at i:58290095 original size:91 final size:92
Alignment explanation
Indices: 58289908--58290113 Score: 243
Period size: 91 Copynumber: 2.2 Consensus size: 92
58289898 CACATTGAAC
* * * *
58289908 ATTTTCAAAGTATAAGTACTACATTGGATATTTTATGAAAAGTATAAGTACCAAATAATACAAAA
1 ATTTTCAAAGTATAGGTACCACATTGGACATTTTATGAAAAGTACAAGTACCAAATAATACAAAA
* *
58289973 ATTAATAATTCAAGTACCACACTGGAT
66 ATTAATAATTCAAATACCACACTAGAT
* * * *
58290000 ATTTTCAAAGTATAGGTGCCAGATTGGACATTTTATGAAAA-TACAATTACCAAATAATACACAA
1 ATTTTCAAAGTATAGGTACCACATTGGACATTTTATGAAAAGTACAAGTACCAAATAATACAAAA
* * * * *
58290064 ATTGATAGTTTAAATACCATATTAGAT
66 ATTAATAATTCAAATACCACACTAGAT
*
58290091 ATTTTGTGAAAGTATAGGTACCA
1 A-TTT-TCAAAGTATAGGTACCA
58290114 AATGTGACAT
Statistics
Matches: 95, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
91 41 0.43
92 39 0.41
93 15 0.16
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.33
Consensus pattern (92 bp):
ATTTTCAAAGTATAGGTACCACATTGGACATTTTATGAAAAGTACAAGTACCAAATAATACAAAA
ATTAATAATTCAAATACCACACTAGAT
Found at i:58303279 original size:34 final size:34
Alignment explanation
Indices: 58303231--58303304 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
58303221 TAACAAACTT
* * *
58303231 TAACAAACTCAGCTTTCTACTCCTATTAATAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAATAAGC
* *
58303265 TAACAAACTTAGCTTCCTTCTACTACTAATAAGC
1 TAACAAACTCAGCTTCCTACTACTACTAATAAGC
58303299 TAACAA
1 TAACAA
58303305 TCTCCCTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (34 bp):
TAACAAACTCAGCTTCCTACTACTACTAATAAGC
Found at i:58305521 original size:76 final size:76
Alignment explanation
Indices: 58305425--58305574 Score: 219
Period size: 76 Copynumber: 2.0 Consensus size: 76
58305415 CTTCTATTCC
* *
58305425 TGAGTGTGCCCTCAAGATATAATTCGTTTTGGACTGTACAATAAACTCCTCAATTTCATTATGAC
1 TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
58305490 CAATCACTTCT
66 CAATCACTTCT
* * ** ** *
58305501 TGAGTGTGTCCTCAAAATATAATTCTTTTTGGACTATGTAATAAACTTTTCAATTTCATTATGGC
1 TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
58305566 CAATCACTT
66 CAATCACTT
58305575 AATTTAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (76 bp):
TGAGTGTGCCCTCAAAATATAATTCGTTTTGGACTATACAATAAACTCCTCAATTTCATTATGAC
CAATCACTTCT
Found at i:58307788 original size:3 final size:3
Alignment explanation
Indices: 58307780--58307811 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
58307770 TTCTGTTGGT
58307780 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
58307812 TGCTGTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:58314702 original size:20 final size:20
Alignment explanation
Indices: 58314679--58314729 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
58314669 TATATGTACG
*
58314679 TATATATATATTATACTTTC
1 TATATATATATTATAATTTC
* *
58314699 TATACATATTTTATAATTTC
1 TATATATATATTATAATTTC
58314719 TATATATATAT
1 TATATATATAT
58314730 ATGTAATCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATATATATTATAATTTC
Found at i:58314736 original size:104 final size:104
Alignment explanation
Indices: 58314621--58314835 Score: 389
Period size: 104 Copynumber: 2.1 Consensus size: 104
58314611 TTTTTAAGTT
58314621 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAAC-T-TATATATATGTACGTATAT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
*
58314684 ATATATTATACTTTCTATACATATTTTATAATTTCTATATA
66 AT-T-TTATACTTTCCATACATATTTTATAATTTCTATATA
58314725 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
58314790 ATTTTATACTTTCCATACATATTTTATAATTTCTATATA
66 ATTTTATACTTTCCATACATATTTTATAATTTCTATATA
58314829 TATATAT
1 TATATAT
58314836 TTTTCTTTAT
Statistics
Matches: 108, Mismatches: 1, Indels: 4
0.96 0.01 0.04
Matches are distributed among these distances:
104 85 0.79
105 2 0.02
106 21 0.19
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (104 bp):
TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
ATTTTATACTTTCCATACATATTTTATAATTTCTATATA
Found at i:58314827 original size:52 final size:51
Alignment explanation
Indices: 58314665--58314831 Score: 173
Period size: 52 Copynumber: 3.2 Consensus size: 51
58314655 TTTATTAACT
58314665 TATATATATGTACGTATATATATATTATACTTTCTATACATATTTTATAATTTC
1 TATATATATGTACGTATATAT-T-TTATACTTTC-ATACATATTTTATAATTTC
* * * *
58314719 TATATATATATATGTA-ATCA--TTAT-CTTT-ATGATCTATATATTTATTAACTTA
1 TATATATATGTACGTATAT-ATTTTATACTTTCAT-A-C-ATAT-TTTA-TAATTTC
58314771 TATATATATGTACGTATATATTTTATACTTTCCATACATATTTTATAATTTC
1 TATATATATGTACGTATATATTTTATACTTT-CATACATATTTTATAATTTC
58314823 TATATATAT
1 TATATATAT
58314832 ATATTTTTCT
Statistics
Matches: 93, Mismatches: 8, Indels: 26
0.73 0.06 0.20
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 5 0.05
50 8 0.09
51 4 0.04
52 34 0.37
53 8 0.09
54 23 0.25
55 5 0.05
56 1 0.01
57 2 0.02
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (51 bp):
TATATATATGTACGTATATATTTTATACTTTCATACATATTTTATAATTTC
Found at i:58314831 original size:20 final size:20
Alignment explanation
Indices: 58314785--58314831 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
58314775 TATATGTACG
*
58314785 TATATATTTTATACTTTCCA
1 TATATATTTTATAATTTCCA
* *
58314805 TACATATTTTATAATTTCTA
1 TATATATTTTATAATTTCCA
58314825 TATATAT
1 TATATAT
58314832 ATATTTTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATATTTTATAATTTCCA
Found at i:58316493 original size:3 final size:3
Alignment explanation
Indices: 58316487--58316529 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
58316477 TGGCATTGTG
* *
58316487 TTA TTA TTA -TA TTA TTTA CTA TCA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T
58316530 ATTTCCTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:58316570 original size:26 final size:24
Alignment explanation
Indices: 58316539--58316587 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
58316529 TATTTCCTAT
*
58316539 TCATATACATTCGCATATTTTATATG
1 TCATATACA-T-GCATATTTAATATG
*
58316565 TCATATATATGCATATTTAATAT
1 TCATATACATGCATATTTAATAT
58316588 ATATATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 1 0.05
26 8 0.38
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (24 bp):
TCATATACATGCATATTTAATATG
Found at i:58316581 original size:24 final size:23
Alignment explanation
Indices: 58316551--58316595 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
58316541 ATATACATTC
* *
58316551 GCATATTTTATATGTCATATATAT
1 GCATATTTAATATAT-ATATATAT
58316575 GCATATTTAATATATATATAT
1 GCATATTTAATATATATATAT
58316596 TAAGCTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (23 bp):
GCATATTTAATATATATATATAT
Found at i:58322329 original size:44 final size:44
Alignment explanation
Indices: 58322266--58323300 Score: 1190
Period size: 44 Copynumber: 23.5 Consensus size: 44
58322256 GAAAGGCAGC
* * *
58322266 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * *
58322310 AGATCTTGTCTTCATGTATTAACGTGAAGTAGATCGAAGA-AAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAA-T
*** * ***
58322354 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA-AAGT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAA-T
* * * * * *
58322399 AGATCTTATCTTCATGTATCGGCGTGAAGTCGATCGAAGAAAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
** * * *
58322443 AGATCTTGTCTTCATGTATCAACGTGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * * *
58322487 AGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * *
58322531 AAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * **
58322575 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
*** * ***
58322619 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCGAAGATAAT
* *
58322664 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
58322708 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* **
58322752 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATGGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
*
58322796 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAGGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
58322840 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
*
58322884 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
*
58322928 GGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
*
58322972 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATA--AT
*
58323018 -G-TCTTATCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
58323060 GGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
* *
58323104 AGATCTTATCTTCATATATTGACATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
**
58323148 AGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAAT
* * * *
58323192 AGATCTTATTTTCATATATTGATATGAAGTAGATCGAAGATAAT
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* * * * * **
58323236 GGATCTTGTCTTCGTGTATTGACAGGAAGTAGATCAAAGACAGC
1 AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
* *
58323280 AGACCTTGTCTTCCTGTATTG
1 AGATCTTGTCTTCATGTATTG
58323301 GCAGCGAGGA
Statistics
Matches: 875, Mismatches: 96, Indels: 40
0.87 0.09 0.04
Matches are distributed among these distances:
42 2 0.00
43 9 0.01
44 784 0.90
45 78 0.09
46 2 0.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (44 bp):
AGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAAT
Found at i:58333305 original size:21 final size:21
Alignment explanation
Indices: 58333280--58333319 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
58333270 TAAGGTTTAA
*
58333280 GGGTTAGTAGTTAGGGGTTTG
1 GGGTTAGGAGTTAGGGGTTTG
* *
58333301 GGGTTTGGGGTTAGGGGTT
1 GGGTTAGGAGTTAGGGGTT
58333320 AAGAGTTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.53, T:0.38
Consensus pattern (21 bp):
GGGTTAGGAGTTAGGGGTTTG
Found at i:58338188 original size:43 final size:43
Alignment explanation
Indices: 58338140--58338234 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
58338130 TTCAGGATAC
* * ** *
58338140 TTTATTACCAAGATTTCCTTGATTAAGTAAATGTATTATATCT
1 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
*
58338183 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTGTATAT
1 TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
58338226 TTTATTACC
1 TTTATTACC
58338235 TTGCATATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (43 bp):
TTTATTACCAAGATTTACTTGATTAAGAAAATACATTATATAT
Found at i:58338552 original size:43 final size:44
Alignment explanation
Indices: 58338507--58338790 Score: 350
Period size: 43 Copynumber: 6.6 Consensus size: 44
58338497 AAGATAAGTT
* * * *
58338507 TTTAGCGGCGTTTTTGTGAAAAGCGTCGCTAAAGGTCA-TGGTT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
* *
58338550 TTTAGCAGCGTTTGCGGGAAAAAGCGCCGCTAAAGGTCA-TGGTC
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTCACTGGTC
* * *
58338594 TATAGTGTCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA-TGGT-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
* * *
58338636 TTATAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGAT-ATTGGTC
1 TT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
58338680 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-CACTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
* * * *
58338723 TATAGCGGCGTTTGT-GGAATAGTGCCCCTAAAGGT-ACTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
58338765 TTTAGCGGCGTTTGTGGGAAAAGCGC
1 TTTAGCGGCGTTTGTGGGAAAAGCGC
58338791 TGCAAAATTA
Statistics
Matches: 208, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
42 39 0.19
43 131 0.63
44 38 0.18
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACTGGTC
Found at i:58341131 original size:6 final size:6
Alignment explanation
Indices: 58341122--58341146 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
58341112 ATGTATACAT
58341122 ATATAA ATATAA ATATAA ATATAA A
1 ATATAA ATATAA ATATAA ATATAA A
58341147 CCCTAAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATATAA
Found at i:58341799 original size:22 final size:22
Alignment explanation
Indices: 58341766--58341821 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
58341756 ATTTCCTCTC
58341766 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
58341789 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
58341811 AATTCTCTCAA
1 AATTCTCTCAA
58341822 ATCTATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 29 0.88
23 4 0.12
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:58341850 original size:51 final size:51
Alignment explanation
Indices: 58341793--58341908 Score: 205
Period size: 51 Copynumber: 2.3 Consensus size: 51
58341783 TTCCAAAATT
* * *
58341793 CTCTCAATTTCCTTCCAAAATTCTCTCAAATCTATATTTAATTTCAATTTG
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
58341844 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
58341895 CTCTCAATTTCCTT
1 CTCTCAATTTCCTT
58341909 TTTTAAAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.28, C:0.26, G:0.01, T:0.45
Consensus pattern (51 bp):
CTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
Found at i:58343059 original size:7 final size:7
Alignment explanation
Indices: 58343049--58343073 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
58343039 ATTCGATTGA
58343049 TATTTAG
1 TATTTAG
58343056 TATTTAG
1 TATTTAG
58343063 TATTTAG
1 TATTTAG
58343070 TATT
1 TATT
58343074 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:58344321 original size:20 final size:19
Alignment explanation
Indices: 58344287--58344339 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
58344277 TAGTAATAAT
*
58344287 AATAGACAATAATAGTAAC
1 AATAAACAATAATAGTAAC
58344306 AATAAACAAGTAATAGT-AC
1 AATAAACAA-TAATAGTAAC
*
58344325 CATAAAACAATAATA
1 AAT-AAACAATAATA
58344340 ACGTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.60, C:0.11, G:0.08, T:0.21
Consensus pattern (19 bp):
AATAAACAATAATAGTAAC
Found at i:58345881 original size:44 final size:46
Alignment explanation
Indices: 58345829--58345936 Score: 136
Period size: 44 Copynumber: 2.4 Consensus size: 46
58345819 ATAAGACTTT
* *
58345829 TATC-TTCGATCTACTTCGCCACCGA-TATGGGAAGACAATATCTGC
1 TATCTTTCGATCTACTTCACCA-CGAGTATGGGAAGACAAGATCTGC
* *
58345874 T-T-TTTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGG
1 TATCTTTCGATCTACTTCACCACGAGTATGGGAAGACAAGATCTGC
58345918 TATCTTT-GATCTACTTCAC
1 TATCTTTCGATCTACTTCAC
58345937 GCCAGTACAT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
43 2 0.04
44 36 0.65
45 14 0.25
46 3 0.05
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (46 bp):
TATCTTTCGATCTACTTCACCACGAGTATGGGAAGACAAGATCTGC
Found at i:58346158 original size:132 final size:132
Alignment explanation
Indices: 58345998--58347385 Score: 1859
Period size: 132 Copynumber: 10.5 Consensus size: 132
58345988 ACCGGGGGGA
* *
58345998 TAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * * * *
58346063 TGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTGCTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
58346128 AG
131 AG
* *
58346130 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATTTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * * * *
58346195 TGCTCCACTACTACTTAAGGAGACAAGATCTGAAATATTCAATCTATTCCGTTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
58346260 AG
131 AG
* * *
58346262 TAGAATCACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* *
58346327 TGCTCCACTACTGCTTAAGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
58346392 AG
131 AG
* *
58346394 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * * * *
58346459 TGCTTCACTA-T-CTATACAGGAAGGCAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCAG
66 TGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
58346522 GGAAG
128 GGAAG
*
58346527 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTCT-AT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT-TGAT
* * * * * *
58346591 CTACTTCACTA-T-CTATGCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCGCTGTTGCCCA
65 CTGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCA
58346654 GGGAAG
127 GGGAAG
* * * *
58346660 TAGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAAT-TCACCATCTTTGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCT-GCCATCTTTGAT
* * * *
58346724 CTGCTCCACTACTGCTTGGGGAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGACCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
58346789 AAG
130 AAG
* *
58346792 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * * *
58346857 TACTCCACTACTTCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCCGCCCAGGG-
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
58346921 AG
131 AG
* **
58346923 ATAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGAT
* * * * *
58346988 CTACTCCTCTACTGCTTAGGGAGATAAGATCTG--TTCTTCAATCTATTCCGCTGCTGTCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGG
58347051 AA-
130 AAG
* * * * *
58347053 -AGAATTACTGGCTTCAACGTACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * *
58347117 TGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAGTCTATTCCGCTACTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
58347182 AG
131 AG
* * * * *
58347184 TAGAATTACTGGCTTCAATGTACTCCACTGCAACTTCAAGGAGGTAAAATTTGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
* * * * * * *
58347249 TGCTCCGCT-GT-CTATGCAGGAAGGCAAGATCTGAAATCTTCAATCTATTTCACTGCTGCCCAA
66 TGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAG
58347312 GGAAG
128 GGAAG
* * *
58347317 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GAGGAGGTAAAATCCGCCATCTTGGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAG-GGAGGTAAAATCTGCCATCTTTGAT
58347381 CTGCT
65 CTGCT
58347386 TCGCTGTCTA
Statistics
Matches: 1134, Mismatches: 103, Indels: 37
0.89 0.08 0.03
Matches are distributed among these distances:
128 86 0.08
130 58 0.05
131 7 0.01
132 637 0.56
133 342 0.30
134 2 0.00
135 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATC
TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCCAGGGA
AG
Found at i:58349721 original size:19 final size:20
Alignment explanation
Indices: 58349697--58349736 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
58349687 GGTTTAGTAG
58349697 AAAAAATC-TAAAAAATGAA
1 AAAAAATCGTAAAAAATGAA
*
58349716 AAAAAATCGTAAAGAATGAA
1 AAAAAATCGTAAAAAATGAA
58349736 A
1 A
58349737 GAACATTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.70, C:0.05, G:0.10, T:0.15
Consensus pattern (20 bp):
AAAAAATCGTAAAAAATGAA
Found at i:58353881 original size:20 final size:19
Alignment explanation
Indices: 58353847--58353899 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
58353837 TAGTAATAAT
*
58353847 AATAGACAATAATAGTAAC
1 AATAAACAATAATAGTAAC
58353866 AATAAACAAGTAATAGT-AC
1 AATAAACAA-TAATAGTAAC
*
58353885 CATAAAACAATAATA
1 AAT-AAACAATAATA
58353900 ACGTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.60, C:0.11, G:0.08, T:0.21
Consensus pattern (19 bp):
AATAAACAATAATAGTAAC
Found at i:58354639 original size:18 final size:18
Alignment explanation
Indices: 58354616--58354650 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
58354606 TTTAAATAGC
58354616 TGAAATGGAAAAGATAAA
1 TGAAATGGAAAAGATAAA
58354634 TGAAATGGAAAAGATAA
1 TGAAATGGAAAAGATAA
58354651 CTCAACAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
TGAAATGGAAAAGATAAA
Found at i:58356090 original size:44 final size:45
Alignment explanation
Indices: 58356041--58356127 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
58356031 ATATTTTGAA
*
58356041 TATTTTGATATTATTTTATGTAA-AAGAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAATAA-AATAGAAATTTATTTGAGT
*
58356085 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGA
58356128 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 32 0.82
45 7 0.18
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAATTTATTTGAGT
Found at i:58356185 original size:23 final size:23
Alignment explanation
Indices: 58356133--58357178 Score: 768
Period size: 23 Copynumber: 43.5 Consensus size: 23
58356123 TTTGATGTAA
*
58356133 TAAAAACCCTAACCTAATTTAAC
1 TAAAAACCCTAACCTAATTTAAT
*** * *
58356156 CCTAAACTCTAACCTAAATTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356179 TAAAAACCCAAAACTCTTAATTTAATTTAAT
1 TAAAAACCC-TAAC-C-----T-AATTTAAT
* *
58356210 TAAAAACCATAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
58356233 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
58356256 TAAAAACCCTAAACCCTTAATTTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
*
58356281 -AACCCTAACCCTAACCTAATTTAAT
1 TAA---AAACCCTAACCTAATTTAAT
58356306 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356329 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
58356352 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T--AAA----AACCCTAACCTAATTTAAT
*
58356381 TAAAAACCCTAAACCCTTATTTAA-
1 TAAAAACCCT-AA-CCTAATTTAAT
58356405 -AAACCCTAACCCTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
*
58356431 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
58356453 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
58356476 TAAAAACCTTAAACC---CTTAAT
1 TAAAAACCCT-AACCTAATTTAAT
*
58356497 TAAAAAACCTTAACCTAATTTAAT
1 T-AAAAACCCTAACCTAATTTAAT
*
58356521 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356544 TAAAAACCTTAAACCCTTAA-TTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
58356568 -AAACCCTAACCCTAACCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
*
58356594 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
58356616 TAAAAATCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356639 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356662 TAAAAACCCTAAACCCTTAA-TTAAA
1 TAAAAACCCT-AA-CC-TAATTTAAT
*
58356687 AAACACTAACCCTAACCCTAACCTAATTTAAT
1 TAA-A--AACCCTAA-CCT-A----ATTTAAT
*
58356719 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
58356741 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
58356764 TAAAAACCCTAGCCTAATTTAAA
1 TAAAAACCCTAACCTAATTTAAT
* *
58356787 TAAAAACCCTAAACCCTTAGTTAA-
1 TAAAAACCCT-AA-CCTAATTTAAT
*
58356811 -AAACCCTAACCCTAATCTAATTTAAT
1 TAAA----AACCCTAACCTAATTTAAT
58356837 TAAAAACCCTAAACCTAATTTAAT
1 TAAAAACCCT-AACCTAATTTAAT
58356861 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356884 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356907 TAAAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
58356929 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
58356952 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* * *
58356975 TAGAAACCCTAAACCATTAATTAAAAA
1 TAAAAACCCT-AACC--TAATT-TAAT
***
58357002 TCCTAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
58357025 TAAAAACCTTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
58357048 TATAAACCCTAAACC---CTTAACT
1 TAAAAACCCT-AACCTAATTTAA-T
*
58357070 TAAAAACCTTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
** *
58357093 TAAAAATTCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
58357116 TAAAAACCCTAAACCCTTAA-TTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
58357140 -AAACCCTAACCCTAACCTAATTTAACT
1 TAAA----AACCCTAACCTAATTTAA-T
58357167 TAAAAACCCTAA
1 TAAAAACCCTAA
58357179 ACCCTTAACT
Statistics
Matches: 828, Mismatches: 89, Indels: 211
0.73 0.08 0.19
Matches are distributed among these distances:
21 49 0.06
22 61 0.07
23 375 0.45
24 109 0.13
25 73 0.09
26 40 0.05
27 56 0.07
28 9 0.01
29 28 0.03
30 5 0.01
31 17 0.02
32 6 0.01
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:58356193 original size:30 final size:31
Alignment explanation
Indices: 58356153--58356217 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
58356143 AACCTAATTT
*
58356153 AACCCTAAACTC-TAACCTAAATTAATTAAA
1 AACCCAAAACTCTTAACCTAAATTAATTAAA
** *
58356183 AACCCAAAACTCTTAATTTAATTTAATTAAA
1 AACCCAAAACTCTTAACCTAAATTAATTAAA
58356214 AACC
1 AACC
58356218 ATAGCCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (31 bp):
AACCCAAAACTCTTAACCTAAATTAATTAAA
Found at i:58356326 original size:73 final size:70
Alignment explanation
Indices: 58356200--58357178 Score: 824
Period size: 68 Copynumber: 13.6 Consensus size: 70
58356190 AACTCTTAAT
* *
58356200 TTAATTTAATTAAAAACCATAGCCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCC
1 TTAATTTAA--AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCC
58356265 TAAACCC
64 TAAACCC
*
58356272 TTAATTTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACC
1 TTAATTTAAAA---AAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACC
* *
58356337 CT-AGCCTAAT
63 CTAAACC---C
* *
58356347 TTAA-TTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTATTTAAAAA
1 TTAATTTAAAAA----AACCCTAACCTAATTTAATTAAAAACCCT-AACCTAATTTAATTAAAAA
58356408 CCCT-AACCC
61 CCCTAAACCC
* *
58356417 TAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCTAGCCTAATTTAATTAA
1 T----TAATTTAA--AAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAACCTAATTTAATTAA
*
58356479 AAACCTTAAACCC
58 AAACCCTAAACCC
* * *
58356492 TTAA-TT-AAAAAACCTTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCTTA
1 TTAATTTAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
58356555 AACCC
66 AACCC
*
58356560 TTAA-TTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAA
1 TTAATTTAAAAA----AACCCTAACCTAATTTAATTAAAAACCCT-AACCTAATTTAA-TTAAAA
*
58356621 ATCCT-AA-CC
60 ACCCTAAACCC
* **
58356630 -TAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAAACAC
1 TTAATTTAA--AAAAACCCTAACCTAATTTAATTAAAAACCCT-AA-CC-TAATTTAATTAA-A-
58356693 TAACCCT-AACCC
59 -AACCCTAAACCC
*
58356705 TAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAA
1 T----TAATTTAA--AAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAACCTAATTTAATTAA
*
58356767 AAACCCT--AGCC
58 AAACCCTAAACCC
* * *
58356778 -TAATTTAAATAAAAACCCTAAACCCTTAGTTAA--AAACCCTAACCCTAATCTAATTTAATTAA
1 TTAATTT-AA-AAAAACCCT-AA-CCTAATTTAATTAAA----AACCCTAACCTAATTTAATTAA
58356840 AAACCCTAAA-CC
58 AAACCCTAAACCC
*
58356852 -TAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCC
1 TTAATTTAA--AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCC
58356916 TAAACCC
64 TAAACCC
* * *
58356923 TTAACTT--AAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAGAAACCCTA
1 TTAATTTAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
*
58356986 AACCA
66 AACCC
* * *
58356991 TTAA-TTAAAAATCCTAACCCTAACCTAATTTAATTAAAAACCTTAGCCTAATTTAATTATAAAC
1 TTAATTTAAAAA----AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAAC
58357055 CCTAAACCC
62 CCTAAACCC
* * ** *
58357064 TTAACTT--AAAAACCTTAACCTAATTTAATTAAAAATTCTAGCCTAATTTAATTAAAAACCCTA
1 TTAATTTAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
58357127 AACCC
66 AACCC
58357132 TTAA-TTAAAAACCCTAACCCTAACCTAATTTAACTTAAAAACCCTAA
1 TTAATTTAAAAA----AACCCTAACCTAATTTAA-TTAAAAACCCTAA
58357179 ACCCTTAACT
Statistics
Matches: 771, Mismatches: 52, Indels: 166
0.78 0.05 0.17
Matches are distributed among these distances:
66 4 0.01
67 12 0.02
68 216 0.28
69 27 0.04
70 41 0.05
71 20 0.03
72 60 0.08
73 212 0.27
74 75 0.10
75 46 0.06
76 8 0.01
77 11 0.01
78 6 0.01
79 11 0.01
80 19 0.02
81 3 0.00
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (70 bp):
TTAATTTAAAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTA
AACCC
Found at i:58356420 original size:125 final size:119
Alignment explanation
Indices: 58356133--58357178 Score: 614
Period size: 125 Copynumber: 8.7 Consensus size: 119
58356123 TTTGATGTAA
*** * * * *
58356133 TAAAAACCCTAACCTAATTTAACCCTAAACTCTAACCTAAATTAATTAAAAACCCAAAACTCTTA
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAAC-C---
* *
58356198 ATTTAATTTAATTAAAAACCATAGCCTAATTTAATT--AAA---AACCCTAACCTAATTTAAT
61 ---TAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCTAACCCT-ACCTAATTTAAT
* *
58356256 TAAAAACCCTAAACCCTTAATTTAA-AACCCTAACCCTAACCTAATTTAATTAAAAACCCT-AAC
1 TAAAAACCCT-AA-CC-TAATTTAATAA---AAACCCTAGCCTAATTTAATTAAAAACCCTAAAC
*
58356319 CTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAAT
60 CTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAA-CCTAACCCT-ACCTAATTTAAT
* *
58356381 TAAAAACCCTAAACCCTTATTTAA-AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAC
1 TAAAAACCCT-AA-CCTAATTTAATAAA----AACCCTAGCCTAATTTAATTAAAAACCCTAAAC
* *
58356445 C---CTTAACTTAAAAACCCTAGCCTAATTTAATTAAAAACCTTAAACCCT---TAA-TT-A-
60 CTAATTTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACC-T-AACCCTACCTAATTTAAT
* *
58356499 -AAAAACCTTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCTTAAACCCTTA
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAA-CC-TA
*
58356563 A-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT---T-A---ACT
63 ATTTAATTAAA----AACCCTAACCTAATTTAATTAAAAA-CCT-AACCCTACCTAATTTAAT
*
58356616 TAAAAATCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTA
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAA-CC-TA
* * *
58356681 ATTAAAAAACACTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT---T-A---A
63 ATT----TA-ATTAA---AAACCCTAACCTAATTTAATTAAAAA-CCT-AACCCTACCTAATTTA
*
58356739 CT
118 AT
* *
58356741 TAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAAATAAAAACCCTAAACC---C
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCTAAT
* *
58356803 TTAGTTAAAAACCCTAACCCTAATCTAATTTAATTAAA---AACCCTAAACCTAATTTAAT
65 TTAATTAAAAACCCTAA-CCTAATTTAA-TTAA--AAACCTAACCCT--ACCTAATTTAAT
*
58356861 TAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACC---C
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCTAAT
58356923 TTAACTTAAAAACCCTAACCTAATTTAATT--AAA---AACCCTAGCCTAATTTAAT
65 TTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCTAACCCTA-CCTAATTTAAT
* * * *
58356975 TAGAAACCCTAAACCATTAA-TTAA-AAATCCTAACCCTAACCTAATTTAATTAAAAA-CCTTAG
1 TAAAAACCCT-AACC--TAATTTAATAAA----AACCCTAGCCTAATTTAATTAAAAACCCTAAA
* * *
58357037 CCTAATTTAATTATAAACCCTAAACC---CTTAACTTAAAAACCTTA----ACCTAATTTAAT
59 CCTAATTTAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCTAACCCTACCTAATTTAAT
** * * *
58357093 TAAAAATTCTAGCCTAATTTAATTAAAAACCCTAAACC---CTTAATTAAAAACCCTAACCCTAA
1 TAAAAACCCTAACCTAATTTAA-TAAAAACCCT-AGCCTAATTTAATTAAAAACCCT-A----AA
58357155 CCTAATTTAACTTAAAAACCCTAA
59 CCTAATTTAA-TTAAAAACCCTAA
58357179 ACCCTTAACT
Statistics
Matches: 785, Mismatches: 49, Indels: 183
0.77 0.05 0.18
Matches are distributed among these distances:
111 6 0.01
112 19 0.02
113 43 0.05
114 38 0.05
115 32 0.04
116 15 0.02
117 33 0.04
118 155 0.20
119 59 0.08
120 89 0.11
121 19 0.02
123 18 0.02
124 45 0.06
125 171 0.22
126 17 0.02
127 26 0.03
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (119 bp):
TAAAAACCCTAACCTAATTTAATAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCTAATT
TAATTAAAAACCCTAACCTAATTTAATTAAAAACCTAACCCTACCTAATTTAAT
Found at i:58356426 original size:45 final size:45
Alignment explanation
Indices: 58356205--58357152 Score: 434
Period size: 45 Copynumber: 20.0 Consensus size: 45
58356195 TTAATTTAAT
* * *
58356205 TTAA-TTAAAAACCAT-AGCCTAATTTAATTAAAAACCCTAACCTAAT
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACC---C
* *
58356251 TTAA-TTAAAAACCCTAAACCCTTAATTTAA--AACCCTAACCCTAACCTAAT
1 TTAATTTAAAAACCCT-AACCC-TAATTTAATTAA---AAACCCTAACC---C
* *
58356301 TTAA-TTAAAAACCCTAA-CCTAATTTAATTAAAAACCCTAGCCTAAT
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACC---C
58356347 TTAA-TTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTTAAAAACCCTAA--C---CCTAATTTAATTAAAAACCCT-AACCC
58356397 TT-ATTTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTTAAAAACCCTAA--C---CCTAATTTAATTAAAAACCCT-AACCC
* * *
58356447 TTAACTTAAAAACCCT-AGCCTAATTTAATTAAAAACCTTAAACCC
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCT-AACCC
* * * *
58356492 TTAATTAAAAAACCTTAA-CCTAATTTAATTAAAAACCCTAGCCTAAT
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACC---C
*
58356539 TTAA-TTAAAAACCTTAAACCC----TTAATTAAAAACCCTAACCC
1 TTAATTTAAAAACCCT-AACCCTAATTTAATTAAAAACCCTAACCC
* *
58356580 TAACCTAATTTAATTAAAAACCCTAAACCC----TTAACTTAAAAATCCTAACCTAAT
1 T----TAA--T--TTAAAAACCCT-AACCCTAATTTAA-TTAAAAACCCTAACC---C
*
58356634 TTAA-TTAAAAACCCT-AGCCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCT-AACCC
*
58356678 TTAATTAAAAAACACTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAATT---TAA-A--AACCCTAA--C---CCTAATTTAATTAAAAACCCT-AACCC
* *
58356735 TTAACTTAAAAACCCTAA-CCTAATTTAATTAAAAACCCT-AGCC
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACCC
*
58356778 -TAATTTAAATAAAAACCCTAAACCC----TTAGTTAAAAACCCTAACCC
1 TTAA-TT---TAAAAACCCT-AACCCTAATTTAATTAAAAACCCTAACCC
* *
58356823 TAATCTAATTTAATTAAAAACCCTAAACCTAATTTAATTAAAAACCCTAACCTAAT
1 ---T-TAA--T--TTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACC---C
*
58356879 TTAA-TTAAAAACCCT-AGCCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCT-AACCC
* *
58356923 TTAACTTAAAAACCCTAA-CCTAATTTAATTAAAAACCCT-AGCC
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACCC
* *
58356966 -TAATTTAATTAGAAACCCTAAACC--A-TTAATTAAAAATCCTAACCC
1 TTAATTT-A--A-AAACCCTAACCCTAATTTAATTAAAAACCCTAACCC
* * * *
58357011 TAACCTAATTTAATTAAAAACCTTAGCCTAATTTAATTATAAACCCTAAACCC
1 T----TAATTT-A--AAAACCCTAACCCTAATTTAATTAAAAACCCT-AACCC
* * ** * *
58357064 TTAACTTAAAAACCTTAA-CCTAATTTAATTAAAAATTCTAGCCTAAT
1 TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACC---C
58357111 TTAA-TTAAAAACCCTAAACCC----TTAATTAAAAACCCTAACCC
1 TTAATTTAAAAACCCT-AACCCTAATTTAATTAAAAACCCTAACCC
58357152 T
1 T
58357153 AACCTAATTT
Statistics
Matches: 742, Mismatches: 61, Indels: 203
0.74 0.06 0.20
Matches are distributed among these distances:
41 2 0.00
42 8 0.01
43 11 0.01
44 76 0.10
45 153 0.21
46 124 0.17
47 49 0.07
48 14 0.02
49 32 0.04
50 127 0.17
51 43 0.06
52 38 0.05
53 30 0.04
54 3 0.00
57 32 0.04
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (45 bp):
TTAATTTAAAAACCCTAACCCTAATTTAATTAAAAACCCTAACCC
Found at i:58356558 original size:30 final size:29
Alignment explanation
Indices: 58356524--58356610 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
58356514 ATTTAATTAA
*
58356524 AAACCCTAGCCTAATTTAATTAAAAACCTT
1 AAACCCTA-CCTAATTTAATTAAAAACCCT
58356554 AAA--C--CC---TT-AATTAAAAACCCT
1 AAACCCTACCTAATTTAATTAAAAACCCT
58356575 -AACCCTAACCTAATTTAATTAAAAACCCT
1 AAACCCT-ACCTAATTTAATTAAAAACCCT
58356604 AAACCCT
1 AAACCCT
58356611 TAACTTAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 20
0.69 0.01 0.30
Matches are distributed among these distances:
20 2 0.04
21 12 0.26
22 3 0.07
25 4 0.09
28 3 0.07
29 13 0.28
30 9 0.20
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (29 bp):
AAACCCTACCTAATTTAATTAAAAACCCT
Found at i:58356712 original size:57 final size:57
Alignment explanation
Indices: 58356643--58356754 Score: 190
Period size: 57 Copynumber: 2.0 Consensus size: 57
58356633 TTTAATTAAA
*
58356643 AACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAAACACTAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTT-AAAAACACTAACCCT
*
58356700 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACC
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACACTAACC
58356755 TAATTTAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 50 0.96
58 2 0.04
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (57 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACACTAACCCT
Found at i:58356843 original size:29 final size:28
Alignment explanation
Indices: 58356807--58356907 Score: 103
Period size: 24 Copynumber: 3.9 Consensus size: 28
58356797 AAACCCTTAG
58356807 TTAAAAACCCTAACCCTAATCTAATTTAA
1 TTAAAAACCCTAA-CCTAATCTAATTTAA
*
58356836 TTAAAAACCCT-A---AACCTAATTTAA
1 TTAAAAACCCTAACCTAATCTAATTTAA
58356860 TTAAAAACCCTAA-C----CTAATTTAA
1 TTAAAAACCCTAACCTAATCTAATTTAA
* *
58356883 TTAAAAACCCTAGCCTAATTTAATT
1 TTAAAAACCCTAACCTAATCTAATT
58356908 AAAAACCCTA
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
23 21 0.34
24 23 0.37
25 1 0.02
28 6 0.10
29 11 0.18
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.32
Consensus pattern (28 bp):
TTAAAAACCCTAACCTAATCTAATTTAA
Found at i:58357171 original size:51 final size:51
Alignment explanation
Indices: 58357105--58357213 Score: 166
Period size: 53 Copynumber: 2.1 Consensus size: 51
58357095 AAAATTCTAG
58357105 CCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTAA
* *
58357155 CCTAATTTAACTTAAAAACCCTAAACCCTTAACTTTAAAAACTCTAACCTTAA
1 CCTAATTTAA-TTAAAAACCCTAAACCCTTAAC-TTAAAAACCCTAACCCTAA
*
58357208 CGTAAT
1 CCTAAT
58357214 GTTAGATTTG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
50 10 0.19
51 21 0.40
53 22 0.42
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.28
Consensus pattern (51 bp):
CCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCTAA
Found at i:58357189 original size:22 final size:21
Alignment explanation
Indices: 58357161--58357208 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
58357151 CTAACCTAAT
58357161 TTAAC-TTAAAAACCCTAAACCC
1 TTAACTTTAAAAACCCT-AA-CC
*
58357183 TTAACTTTAAAAACTCTAACC
1 TTAACTTTAAAAACCCTAACC
58357204 TTAAC
1 TTAAC
58357209 GTAATGTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 7 0.29
23 10 0.42
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAACTTTAAAAACCCTAACC
Found at i:58357361 original size:116 final size:116
Alignment explanation
Indices: 58357210--58357427 Score: 382
Period size: 116 Copynumber: 1.9 Consensus size: 116
58357200 AACCTTAACG
* *
58357210 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTCATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAAATAATAATTGTACATAATTTCATA
58357275 ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
* * *
58357326 TAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAATTAATAATTGTATATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAAATAATAATTGTACATAATTTCATA
*
58357391 ATTTTACTAACCATTAATACAATTTTTTGACTTAATA
66 ATTTTACTAACCATTAATACAAATTTTTGACTTAATA
58357428 CAATTTATCA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 96 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (116 bp):
TAATGTTAGATTTGGAAAAATGTTTTGACTAGTACTAACAAATAATAATTGTACATAATTTCATA
ATTTTACTAACCATTAATACAAATTTTTGACTTAATAATTTTACATTCACA
Found at i:58357444 original size:17 final size:18
Alignment explanation
Indices: 58357403--58357444 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
58357393 TTTACTAACC
* *
58357403 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
58357421 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
58357438 ATTAATA
1 ATTAATA
58357445 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:58360769 original size:126 final size:124
Alignment explanation
Indices: 58360464--58360804 Score: 481
Period size: 126 Copynumber: 2.7 Consensus size: 124
58360454 CTACTGTAAT
* * *
58360464 AAAAACGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTAGAAGCGAT
1 AAAAGCGC-TCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAAGCGAT
* *
58360529 TTTATATTATTTGCTCAGAAACGTC--AAAAAAATTATTTCTTACATGACCTACTGTAGC
65 TTTATATTATTTACTCAGAAACGTCAAAAAAAAATTATTTCTTACATGACCTACTATAGC
* * * * *
58360587 AAAAGCGCGCTGACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCATGCTAGAAACGAT
1 AAAAGCGCTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAAGCGAT
* * *
58360652 TTTATACTATTTACTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGACCTACTATAGC
65 TTTATATTATTTACTCAGAAACGTCAAAAAAA-AATTATTTCTTACATGACCTACTATAGC
* *
58360713 AAAAGCGCATCCAGGAGGGCGCGATTTCACAAATTCTTCTCAAATACCATCCTGCTAGAAGCGAT
1 AAAAGCGC-TCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAAGCGAT
58360778 TTTATATTATTTTA-TCAGAAACGTCAA
65 TTTATATTA-TTTACTCAGAAACGTCAA
58360805 TTCGAAATTA
Statistics
Matches: 191, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
122 1 0.01
123 78 0.41
125 5 0.03
126 102 0.53
127 5 0.03
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (124 bp):
AAAAGCGCTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATT
TTATATTATTTACTCAGAAACGTCAAAAAAAAATTATTTCTTACATGACCTACTATAGC
Found at i:58363584 original size:22 final size:23
Alignment explanation
Indices: 58363521--58363590 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
58363511 TTTTTTTTCC
*
58363521 TGCTACCATTTTGTTGTTGT-TT
1 TGCTACCATTTTGTTGTTATATT
* *
58363543 TGCTACCATTTTGCTATTATATT
1 TGCTACCATTTTGTTGTTATATT
* *
58363566 T-TTACTATTTTGTTGTTATTATT
1 TGCTACCATTTTGTTGTTA-TATT
58363589 TG
1 TG
58363591 GATATTACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 30 0.79
23 8 0.21
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.60
Consensus pattern (23 bp):
TGCTACCATTTTGTTGTTATATT
Found at i:58369974 original size:17 final size:17
Alignment explanation
Indices: 58369952--58369988 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
58369942 ATAAGAACAT
58369952 ACTAACATTTTCATGAA
1 ACTAACATTTTCATGAA
58369969 ACTAACATTTTCATGAA
1 ACTAACATTTTCATGAA
58369986 ACT
1 ACT
58369989 TAAATCAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (17 bp):
ACTAACATTTTCATGAA
Found at i:58372457 original size:5 final size:5
Alignment explanation
Indices: 58372440--58372469 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
58372430 GAGGAATTTG
*
58372440 AGAAA AGAGA AGAAA AGAAA AGAAA AGAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
58372470 TTTAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:58375600 original size:29 final size:28
Alignment explanation
Indices: 58375568--58375624 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
58375558 ATGTCCTAGG
*
58375568 TGAACTTTAATTTTATGTAATTTTATACA
1 TGAACTTTAATTTGATGTAATTTT-TACA
* * *
58375597 TGAATTTTGATTTGATTTAATTTTTACA
1 TGAACTTTAATTTGATGTAATTTTTACA
58375625 AATTATTGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (28 bp):
TGAACTTTAATTTGATGTAATTTTTACA
Found at i:58378355 original size:15 final size:16
Alignment explanation
Indices: 58378331--58378370 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
58378321 TTCTTTGTCC
*
58378331 TTTTTCATTTTTTCTG
1 TTTTTTATTTTTTCTG
58378347 -TTTTTA-TTTTTCTG
1 TTTTTTATTTTTTCTG
58378361 TTTTTTATTT
1 TTTTTTATTT
58378371 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 8 0.38
15 11 0.52
16 2 0.10
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.80
Consensus pattern (16 bp):
TTTTTTATTTTTTCTG
Found at i:58378495 original size:22 final size:24
Alignment explanation
Indices: 58378464--58378511 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
58378454 ATTTGAAATG
*
58378464 TTTTATAATAT-TATTTTTTTAAA
1 TTTTATAATATATATTTTTTAAAA
58378487 TTTTA-AATATATATTTTTTAAAA
1 TTTTATAATATATATTTTTTAAAA
58378510 TT
1 TT
58378512 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTATAATATATATTTTTTAAAA
Found at i:58378514 original size:13 final size:15
Alignment explanation
Indices: 58378487--58378522 Score: 58
Period size: 13 Copynumber: 2.5 Consensus size: 15
58378477 TTTTTTTAAA
58378487 TTTTAAATATATATT
1 TTTTAAATATATATT
58378502 TTTTAAA-AT-TATT
1 TTTTAAATATATATT
58378515 TTTTAAAT
1 TTTTAAAT
58378523 TTAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 11 0.55
14 2 0.10
15 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTAAATATATATT
Found at i:58378546 original size:21 final size:21
Alignment explanation
Indices: 58378502--58378558 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
58378492 AATATATATT
*
58378502 TTTTAAA-ATTATTTTTTAAA
1 TTTTAAATATTATTTTTAAAA
58378522 -TTTAAATATTATTTTTAAAA
1 TTTTAAATATTATTTTTAAAA
58378542 TTTTAAATATTATTTTT
1 TTTTAAATATTATTTTT
58378559 TAATATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 6 0.18
20 12 0.35
21 16 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTAAATATTATTTTTAAAA
Found at i:58378576 original size:20 final size:19
Alignment explanation
Indices: 58378503--58378576 Score: 87
Period size: 21 Copynumber: 3.7 Consensus size: 19
58378493 ATATATATTT
58378503 TTTAAAATTATTTTTTAAA
1 TTTAAAATTATTTTTTAAA
*
58378522 TTTAAATATTATTTTTAAAA
1 TTTAAA-ATTATTTTTTAAA
58378542 TTTTAAATATTATTTTTTAATA
1 -TTTAAA-ATTATTTTTTAA-A
58378564 TTATAAAA-TATTT
1 TT-TAAAATTATTT
58378577 AAAATATATT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
19 6 0.12
20 17 0.35
21 21 0.43
22 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTAAAATTATTTTTTAAA
Found at i:58378647 original size:22 final size:21
Alignment explanation
Indices: 58378616--58378672 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 21
58378606 TCAAATTTAT
*
58378616 TATTTGTTTTATAATATTTTAA-A
1 TATTT-TTTTA-AA-ATTTAAATA
58378639 TATTTTTTTAAAATTTAAATA
1 TATTTTTTTAAAATTTAAATA
58378660 TAATTTTTTTAAA
1 T-ATTTTTTTAAA
58378673 TTATTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 6 0.19
21 4 0.13
22 16 0.52
23 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTTTTTTAAAATTTAAATA
Found at i:58378655 original size:19 final size:20
Alignment explanation
Indices: 58378633--58378674 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
58378623 TTTATAATAT
58378633 TTTAAATAT-TTTTTTAAAA
1 TTTAAATATATTTTTTAAAA
*
58378652 TTTAAATATAATTTTTTTAAA
1 TTTAAATAT-ATTTTTTAAAA
58378673 TT
1 TT
58378675 ATTAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
21 11 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTAAATATATTTTTTAAAA
Found at i:58378685 original size:16 final size:17
Alignment explanation
Indices: 58378652--58378693 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
58378642 TTTTTTAAAA
58378652 TTTAAA-TA-TAATTTT
1 TTTAAATTATTAATTTT
58378667 TTTAAATTATTAA-TTT
1 TTTAAATTATTAATTTT
58378683 TTTAAATTATT
1 TTTAAATTATT
58378694 TTTAAAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.24
16 16 0.64
17 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAAATTATTAATTTT
Found at i:58378707 original size:21 final size:21
Alignment explanation
Indices: 58378683--58378730 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
58378673 TTATTAATTT
58378683 TTTAAAT-TATTTTTAAAGATA
1 TTTAAATGT-TTTTTAAAGATA
**
58378704 TTTAAATGTTTTTTAATTATA
1 TTTAAATGTTTTTTAAAGATA
58378725 TTTAAA
1 TTTAAA
58378731 ATTTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTAAATGTTTTTTAAAGATA
Found at i:58378716 original size:31 final size:29
Alignment explanation
Indices: 58378681--58378738 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
58378671 AATTATTAAT
*
58378681 TTTTTAAATTATTTTTAAAGATATTTAAATG
1 TTTTTAAATTATATTTAAA-AT-TTTAAATG
*
58378712 TTTTTTAATTATATTTAAAATTTTAAA
1 TTTTTAAATTATATTTAAAATTTTAAA
58378739 AAATAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 2 0.08
31 17 0.68
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (29 bp):
TTTTTAAATTATATTTAAAATTTTAAATG
Found at i:58388144 original size:21 final size:20
Alignment explanation
Indices: 58388118--58388195 Score: 61
Period size: 21 Copynumber: 3.9 Consensus size: 20
58388108 GAAGGAAAGT
58388118 TAGTTTTGCCTTTTAACTTGA
1 TAGTTTTGCCTTTTAACTT-A
**
58388139 TAGTTTTGATTTTTTAACTT-
1 TAGTTTTG-CCTTTTAACTTA
***
58388159 TAG-AAAGCCTTTTAACTTTA
1 TAGTTTTGCCTTTTAAC-TTA
*
58388179 TAGTTTTGACTTTTAAC
1 TAGTTTTGCCTTTTAAC
58388196 ATTAGAAAAG
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
18 7 0.17
19 3 0.07
20 6 0.14
21 17 0.40
22 9 0.21
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (20 bp):
TAGTTTTGCCTTTTAACTTA
Found at i:58388182 original size:40 final size:39
Alignment explanation
Indices: 58388125--58388203 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
58388115 AGTTAGTTTT
* *
58388125 GCCTTTTAACTTGATAGTTTTGATTTTTTAACTTTAGAAA
1 GCCTTTTAACTTGATAGTTTTGA-CTTTTAACATTAGAAA
*
58388165 GCCTTTTAACTTTATAGTTTTGACTTTTAACATTAGAAA
1 GCCTTTTAACTTGATAGTTTTGACTTTTAACATTAGAAA
58388204 AGGTAAACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 14 0.39
40 22 0.61
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.48
Consensus pattern (39 bp):
GCCTTTTAACTTGATAGTTTTGACTTTTAACATTAGAAA
Found at i:58388254 original size:21 final size:21
Alignment explanation
Indices: 58388228--58388269 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
58388218 CAAAATAGCG
*
58388228 TAGTTTTGCCGTTTAACTTTA
1 TAGTTTTGACGTTTAACTTTA
*
58388249 TAGTTTTGACTTTTAACTTTA
1 TAGTTTTGACGTTTAACTTTA
58388270 GAAGAGGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (21 bp):
TAGTTTTGACGTTTAACTTTA
Found at i:58388302 original size:70 final size:70
Alignment explanation
Indices: 58388169--58388307 Score: 217
Period size: 70 Copynumber: 2.0 Consensus size: 70
58388159 TAGAAAGCCT
* *
58388169 TTTAACTTTATAGTTTTGACTTTTAACATTAGAAAAGGTAAACATTTATCAAAATAGCGTAGTTT
1 TTTAACTTTATAGTTTTGACTTTTAACATTAGAAAAGGTAAACATTTATCAAAAGAGCATAGTTT
58388234 TGCCG
66 TGCCG
* * *
58388239 TTTAACTTTATAGTTTTGACTTTTAACTTTAGAAGAGGTAAACATTTATC-AAAGCGACATAGTT
1 TTTAACTTTATAGTTTTGACTTTTAACATTAGAAAAGGTAAACATTTATCAAAAGAG-CATAGTT
58388303 TTGCC
65 TTGCC
58388308 TTTTTTTTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
69 4 0.06
70 59 0.94
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (70 bp):
TTTAACTTTATAGTTTTGACTTTTAACATTAGAAAAGGTAAACATTTATCAAAAGAGCATAGTTT
TGCCG
Found at i:58388632 original size:18 final size:19
Alignment explanation
Indices: 58388593--58388634 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
58388583 ATATTTTTAG
* *
58388593 ATTTTTTTAAAATTTTATA
1 ATTTTTTTAAAAGTATATA
58388612 ATTTTTTTAAAAGTATA-A
1 ATTTTTTTAAAAGTATATA
58388630 ATTTT
1 ATTTT
58388635 AGAATTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTTTTAAAAGTATATA
Found at i:58388646 original size:18 final size:19
Alignment explanation
Indices: 58388625--58388660 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
58388615 TTTTTAAAAG
58388625 TATAAAT-TTTAGAATTTC
1 TATAAATATTTAGAATTTC
*
58388643 TATAAATATTTTGAATTT
1 TATAAATATTTAGAATTT
58388661 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (19 bp):
TATAAATATTTAGAATTTC
Found at i:58388660 original size:19 final size:18
Alignment explanation
Indices: 58388625--58388673 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
58388615 TTTTTAAAAG
*
58388625 TATAAAT-TTTAGAATTT
1 TATAAATATTTTGAATTT
58388642 CTATAAATATTTTGAATTT
1 -TATAAATATTTTGAATTT
*
58388661 TAAAAATTATTTT
1 TATAAA-TATTTT
58388674 CAAAATTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:58388667 original size:18 final size:21
Alignment explanation
Indices: 58388630--58388673 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
58388620 AAAAGTATAA
*
58388630 ATTTTAGAATTTCTATAAA-T
1 ATTTTAGAATTTCTAAAAATT
58388650 ATTTT-GAATTT-TAAAAATT
1 ATTTTAGAATTTCTAAAAATT
58388669 ATTTT
1 ATTTT
58388674 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 12 0.55
20 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (21 bp):
ATTTTAGAATTTCTAAAAATT
Found at i:58394222 original size:25 final size:24
Alignment explanation
Indices: 58394157--58394237 Score: 90
Period size: 25 Copynumber: 3.3 Consensus size: 24
58394147 TTCTCGATAT
*
58394157 TGGCTCATATGAGCTTCCCGTTAA
1 TGGCTCACATGAGCTTCCCGTTAA
* ** *
58394181 TGGCTCGCCGGAACTTCCCGTTACA
1 TGGCTCACATGAGCTTCCCGTTA-A
*
58394206 TGGCTCACATGAGCTTCCCGTTTA
1 TGGCTCACATGAGCTTCCCGTTAA
58394230 TGTGCTCA
1 TG-GCTCA
58394238 TATAAGCATT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 21 0.47
25 24 0.53
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.31
Consensus pattern (24 bp):
TGGCTCACATGAGCTTCCCGTTAA
Found at i:58395213 original size:42 final size:42
Alignment explanation
Indices: 58395122--58395214 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
58395112 TTTCATCCAT
* *
58395122 ACGGGCATGTGTCTTAGCCGTGTGTGACACACGGCCTAGCAC
1 ACGGGCATGTGGCTCAGCCGTGTGTGACACACGGCCTAGCAC
* *
58395164 ACAGGCATGTGGCTCATCCGTGTGTGACACACGGCCTAGCAC
1 ACGGGCATGTGGCTCAGCCGTGTGTGACACACGGCCTAGCAC
*
58395206 ATGGGCATG
1 ACGGGCATG
58395215 AGACTTGGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.20
Consensus pattern (42 bp):
ACGGGCATGTGGCTCAGCCGTGTGTGACACACGGCCTAGCAC
Found at i:58395227 original size:42 final size:42
Alignment explanation
Indices: 58395122--58395227 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
58395112 TTTCATCCAT
*
58395122 ACGGGCATGTGTCTTAGCCGTGTGTGACACACGGCCTAGCAC
1 ACGGGCATGTGACTTAGCCGTGTGTGACACACGGCCTAGCAC
* * * *
58395164 ACAGGCATGTGGCTCATCCGTGTGTGACACACGGCCTAGCAC
1 ACGGGCATGTGACTTAGCCGTGTGTGACACACGGCCTAGCAC
* * *
58395206 ATGGGCATGAGACTTGGCCGTG
1 ACGGGCATGTGACTTAGCCGTG
58395228 CGTCCCCTGC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (42 bp):
ACGGGCATGTGACTTAGCCGTGTGTGACACACGGCCTAGCAC
Found at i:58395943 original size:22 final size:22
Alignment explanation
Indices: 58395918--58395961 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
58395908 TATATCAAAA
*
58395918 TAGGTCTTTAACGACGCTTTTT
1 TAGGCCTTTAACGACGCTTTTT
* *
58395940 TAGGCCTTTAGCGGCGCTTTTT
1 TAGGCCTTTAACGACGCTTTTT
58395962 AACGCCACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.20, G:0.23, T:0.43
Consensus pattern (22 bp):
TAGGCCTTTAACGACGCTTTTT
Found at i:58396148 original size:42 final size:42
Alignment explanation
Indices: 58396095--58396206 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
58396085 TTAGTGACGT
*
58396095 TTTTTTA-TAAGCGCTGCTGAAGAACATGATATTTAGTGGCA
1 TTTTTTATTAAGCGCCGCTGAAGAACATGATATTTAGTGGCA
* *
58396136 TTTTTTATTAAGCGCCGCTGAAGAACATGATCTTTAGTGGCG
1 TTTTTTATTAAGCGCCGCTGAAGAACATGATATTTAGTGGCA
* *
58396178 TTTTTTATTAAGTGCCGCTAAAGAACATG
1 TTTTTTATTAAGCGCCGCTGAAGAACATG
58396207 TTTTTTAACG
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 7 0.11
42 58 0.89
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (42 bp):
TTTTTTATTAAGCGCCGCTGAAGAACATGATATTTAGTGGCA
Found at i:58396293 original size:42 final size:42
Alignment explanation
Indices: 58396150--58396319 Score: 128
Period size: 42 Copynumber: 4.0 Consensus size: 42
58396140 TTATTAAGCG
* * * * ***
58396150 CCGCTGAAGAACATGATCTTTAGTGGCGTTTTT-TATTAAGTG
1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTATA-AAAACA
* * * *
58396192 CCGCTAAAGAACATGTTTTTTAACGGCGCTTTGTATAAAAACG
1 CCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTATAAAAACA
* * * *
58396235 CCACTAAA-AATCATGTTCTTCAGCGGCGTTTTTTTATAAACA
1 CCGCTAAAGAA-CATGTTCTTTAGCGGCGTTTTTATAAAAACA
* *
58396277 TCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTGTACAAAAAC
1 CCGCTAAAGAACATGTTCTTTAGCGGCG-TTTT-TATAAAAAC
58396320 GCCACTATTT
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 57 0.58
43 34 0.34
44 8 0.08
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (42 bp):
CCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTATAAAAACA
Found at i:58396695 original size:66 final size:66
Alignment explanation
Indices: 58396624--58396758 Score: 216
Period size: 66 Copynumber: 2.0 Consensus size: 66
58396614 TTCTGCTCTG
* *
58396624 CTCTGCTTCTCTCGATGCCGCATCAGCTTTAAGTCGTAGCTGGAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCTCTCGATGCAGCATCAGCTTTAAGTCGTAGCTGGAGTTCTTCATATTTCCTTTGAA
58396689 C
66 C
* * * *
58396690 CTCTGCTTCTCTCGCTGCAGCCTCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
1 CTCTGCTTCTCTCGATGCAGCATCAGCTTTAAGTCGTAGCTGGAGTTCTTCATATTTCCTTTGAA
58396755 C
66 C
58396756 CTC
1 CTC
58396759 AGCTGTGGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (66 bp):
CTCTGCTTCTCTCGATGCAGCATCAGCTTTAAGTCGTAGCTGGAGTTCTTCATATTTCCTTTGAA
C
Found at i:58402222 original size:7 final size:7
Alignment explanation
Indices: 58402212--58402257 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
58402202 TGATATATTT
58402212 TTATGTA
1 TTATGTA
58402219 TTATGTAA
1 TTATGT-A
58402227 GTTATGTAA
1 -TTATGT-A
58402236 GTTATGTA
1 -TTATGTA
58402244 TTATGTA
1 TTATGTA
58402251 TTATGTA
1 TTATGTA
58402258 AGTACTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.54
8 2 0.05
9 15 0.41
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (7 bp):
TTATGTA
Found at i:58402233 original size:9 final size:9
Alignment explanation
Indices: 58402219--58402539 Score: 180
Period size: 9 Copynumber: 37.4 Consensus size: 9
58402209 TTTTTATGTA
58402219 TTATGTAAG
1 TTATGTAAG
58402228 TTATGTAAG
1 TTATGTAAG
58402237 TTATGT-A-
1 TTATGTAAG
58402244 TTATGT-A-
1 TTATGTAAG
58402251 TTATGTAAG
1 TTATGTAAG
58402260 -TACTGTAAG
1 TTA-TGTAAG
*
58402269 TAATGTAAG
1 TTATGTAAG
* *
58402278 CTAT-AATAG
1 TTATGTA-AG
*
58402287 AATATGT-A-
1 -TTATGTAAG
58402295 TTATGTAAG
1 TTATGTAAG
*
58402304 TTGTGT-A-
1 TTATGTAAG
* ** *
58402311 CTACATCA-
1 TTATGTAAG
*
58402319 TTATGTGAG
1 TTATGTAAG
*
58402328 TTGTGT-A-
1 TTATGTAAG
*
58402335 TAATGTAAG
1 TTATGTAAG
*
58402344 TTAAG-AACG
1 TTATGTAA-G
58402353 TTATGT-A-
1 TTATGTAAG
*
58402360 TAATGTAAG
1 TTATGTAAG
**
58402369 TTATGCCAG
1 TTATGTAAG
* *
58402378 TTATTTAAT
1 TTATGTAAG
58402387 TTATGTAAG
1 TTATGTAAG
58402396 TTATGTAAG
1 TTATGTAAG
* * *
58402405 CTATTTAAT
1 TTATGTAAG
*
58402414 TTTTGTAAG
1 TTATGTAAG
58402423 TTATGTAAG
1 TTATGTAAG
58402432 TTATGTAAG
1 TTATGTAAG
*
58402441 ---T-TAAT
1 TTATGTAAG
* *
58402446 TTATGTTAC
1 TTATGTAAG
58402455 TTATGTAAG
1 TTATGTAAG
58402464 TTATGTAAG
1 TTATGTAAG
* *
58402473 TTATTTAAT
1 TTATGTAAG
58402482 TTATGTAAG
1 TTATGTAAG
58402491 TTATGTAAG
1 TTATGTAAG
* *
58402500 TTATTTAAT
1 TTATGTAAG
*
58402509 TTTTGTAAG
1 TTATGTAAG
58402518 TTATGTAA-
1 TTATGTAAG
58402526 TTAATGTAAG
1 TT-ATGTAAG
58402536 TTAT
1 TTAT
58402540 TTAATTTGTG
Statistics
Matches: 234, Mismatches: 55, Indels: 46
0.70 0.16 0.14
Matches are distributed among these distances:
5 3 0.01
6 1 0.00
7 29 0.12
8 20 0.09
9 175 0.75
10 6 0.03
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:58402458 original size:23 final size:23
Alignment explanation
Indices: 58402423--58402466 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
58402413 TTTTTGTAAG
*
58402423 TTATGTAAGTTATGTAAGTTAAT
1 TTATGTAACTTATGTAAGTTAAT
*
58402446 TTATGTTACTTATGTAAGTTA
1 TTATGTAACTTATGTAAGTTA
58402467 TGTAAGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (23 bp):
TTATGTAACTTATGTAAGTTAAT
Found at i:58407385 original size:115 final size:113
Alignment explanation
Indices: 58407174--58407708 Score: 487
Period size: 115 Copynumber: 4.7 Consensus size: 113
58407164 ATGCATGGTT
* **
58407174 AAGACCAAAACTCTACGTTTTGGTTAAGATATTTCCCGGCGCTTCTCAAAAAGCGCCGCTAATAC
1 AAGA-CAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTC-AAAAGCGCCGCTAATAC
*
58407239 TATGCTTTAGCGGCGATTTCTC-GT-GGACGCCACTAATTCCAGTATACATC
64 TATGCTTTAGCGGCGA-TTCTCAGTATG-CGCCACTAATTCCAGTATACATC
* * ** *
58407289 AAGACTTAAACGT-TGCGTTTTGGTTAATATATTTTATGGCTCTTCTCAAAATGCGCCGCTAATA
1 AAGAC-AAAAC-TCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAA-GCGCCGCTAATA
* * * * * *
58407353 GTATGCTTTAGCGGCG-TTCTCAAATAAGCGCCACTAATTCTAATATACCTC
63 CTATGCTTTAGCGGCGATTCTC-AGTATGCGCCACTAATTCCAGTATACATC
* * *
58407404 AAGACAAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCCTTTTGCAACA-CGCCAG-TAAT
1 AAGACAAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCG-CTTCT-CAAAAGCGCC-GCTAAT
* * * ** *
58407466 ACTATGGTTTAGCGGCGCTTTTCAGTATGCGCCACTAATAACTGTATACATC
62 ACTATGCTTTAGCGGCGATTCTCAGTATGCGCCACTAATTCCAGTATACATC
* * * *
58407518 AAGACAAAAACGT-TGCGTTTTGGTTACGAAATTTTGCGGCGCTTCTCCGAACGCGCCGCTAATA
1 AAGAC-AAAAC-TCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCT-CAAAAGCGCCGCTAATA
* * ** * * *
58407582 GTATGCCTTAGCGGCG-TGT-TCCCTTTGCGCCACTAATTCTAGTATACCTC
63 CTATGCTTTAGCGGCGAT-TCTCAGTATGCGCCACTAATTCCAGTATACATC
* * * * *
58407632 AAGACCAAACTCTGCGTTGTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCAGCTAATATT
1 AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCA-AAAGCGCCGCTAATACT
58407697 ATGCTTTAGCGG
65 ATGCTTTAGCGG
58407709 TGTTTTCCCT
Statistics
Matches: 339, Mismatches: 61, Indels: 42
0.77 0.14 0.10
Matches are distributed among these distances:
112 2 0.01
113 66 0.19
114 114 0.34
115 148 0.44
116 9 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (113 bp):
AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAAGCGCCGCTAATACTA
TGCTTTAGCGGCGATTCTCAGTATGCGCCACTAATTCCAGTATACATC
Found at i:58407770 original size:228 final size:227
Alignment explanation
Indices: 58407174--58407784 Score: 596
Period size: 229 Copynumber: 2.7 Consensus size: 227
58407164 ATGCATGGTT
* ** *
58407174 AAGACCAAAACTCTACGTTTTGGTTAAGATATTTCCCGGCGCTTCTCA-AAAAGCGCCGCTAATA
1 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAA-CGCAGCTAATA
* * ** * **
58407238 CTATGCTTTAGCGGCGATTTCTCGTGGACGCCACTAATTCCAGTATACAT-CA-AGACTTAAACG
64 CTATGCTTTAGCGGCGTTTTCCCGTAAACGCCACTAA---CTGTA-ACATACACAGACAAAAACG
* ** * * *
58407301 TTGCGTTTTGGTTAATATATTTTATGGCTCTTCTCAAAATGCGCCGCTAATAGTATGCTTTAGCG
125 TTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAACGCGCCGCTAATAGTATGCCTTAGCG
58407366 GCGTTCTCAAATAAGCGCCACTAATTCTAATATACCTC
190 GCGTTCTCAAATAAGCGCCACTAATTCTAATATACCTC
* * ** *
58407404 AAGACAAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCCTT-TTGCAACACGCCAG-TAAT
1 AAGACCAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCG-CTTCTCACAAAACG-CAGCTAAT
* * **
58407466 ACTATGGTTTAGCGGCGCTTTT-CAGTATGCGCCACTAATAACTGTATACAT-CA-AGACAAAAA
63 ACTATGCTTTAGCGGCG-TTTTCCCGTAAACGCCAC---TAACTGTA-ACATACACAGACAAAAA
* * **
58407528 CGTTGCGTTTTGGTTACGAAATTTTGCGGCGCTTCTCCGAACGCGCCGCTAATAGTATGCCTTAG
123 CGTTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAACGCGCCGCTAATAGTATGCCTTAG
** ** *
58407593 CGGCGTGT-TC-CCTTTGCGCCACTAATTCTAGTATACCTC
188 CGGCGT-TCTCAAATAAGCGCCACTAATTCTAATATACCTC
* *
58407632 AAGACCAAACTCTGCGTTGTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCAGCTAATATT
1 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCAGCTAATACT
* * * * *
58407697 ATGCTTTAGCGGTGTTTTCCCTTAAACACCACTAACTGTAACATACACCGAGACCAAAACGATGC
66 ATGCTTTAGCGGCGTTTTCCCGTAAACGCCACTAACTGTAACATACA-C-AGACAAAAACGTTGC
* *
58407762 GCTTTGGTTAGGATATTTTGCGG
129 GTTTTGGTTAAGATATTTTGCGG
58407785 TGTTTTGCCA
Statistics
Matches: 311, Mismatches: 53, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
224 4 0.01
225 10 0.03
227 10 0.03
228 126 0.41
229 141 0.45
230 17 0.05
232 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCAGCTAATACT
ATGCTTTAGCGGCGTTTTCCCGTAAACGCCACTAACTGTAACATACACAGACAAAAACGTTGCGT
TTTGGTTAAGATATTTTGCGGCGCTTCTCAAAACGCGCCGCTAATAGTATGCCTTAGCGGCGTTC
TCAAATAAGCGCCACTAATTCTAATATACCTC
Found at i:58417691 original size:109 final size:110
Alignment explanation
Indices: 58417496--58417805 Score: 430
Period size: 110 Copynumber: 2.8 Consensus size: 110
58417486 TTGAAATTCC
* * * * * * * *
58417496 AAAGGATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCCAGCACATTAGAGCACG-TTCC
1 AAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
* *
58417558 TCGAATTTCCAAACGCAAAACATTGCTTTATTTGAGAA-TTTTTA
66 TCGAATTTCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTTA
*
58417602 AAAGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
1 AAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
* *
58417667 TCGAATTTCCAAACGCAAGACATTGCCTTATTTTAAAATTTTTTA
66 TCGAATTTCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTTA
*
58417712 AAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
1 AAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
* * *
58417777 TCGAATTTCCCAAACACTAAATATTGCCT
66 TCGAATTT-CCAAACGCAAAACATTGCCT
58417806 CAATTAGAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
106 26 0.14
108 24 0.13
109 37 0.21
110 77 0.43
111 16 0.09
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (110 bp):
AAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTC
TCGAATTTCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTTA
Found at i:58417876 original size:20 final size:22
Alignment explanation
Indices: 58417845--58417888 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
58417835 TATGATATTT
*
58417845 ATATGCATAATG-GAATAATAA
1 ATATGCATAATGTGAATAAAAA
58417866 ATATG-ATAATGTGAATAAAAA
1 ATATGCATAATGTGAATAAAAA
58417887 AT
1 AT
58417889 GAACAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.30
Consensus pattern (22 bp):
ATATGCATAATGTGAATAAAAA
Found at i:58418014 original size:42 final size:41
Alignment explanation
Indices: 58417936--58418022 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 41
58417926 ATACCATAGC
* *
58417936 AAATAAATAAATAAATAAACTAAAGCATAAACACGGACATAT
1 AAATAAATAAATAAATAAACTAAAACATAAACACGGA-AAAT
* *
58417978 AAATAAATACATAAATGAACATAAAACA-AATA-ACGGAAAAT
1 AAATAAATAAATAAATAAAC-TAAAACATAA-ACACGGAAAAT
58418019 AAAT
1 AAAT
58418023 GAAAATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
41 7 0.18
42 25 0.64
43 7 0.18
ACGTcount: A:0.64, C:0.10, G:0.07, T:0.18
Consensus pattern (41 bp):
AAATAAATAAATAAATAAACTAAAACATAAACACGGAAAAT
Found at i:58434343 original size:45 final size:45
Alignment explanation
Indices: 58434294--58434380 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
58434284 TTATACGCCT
* * *
58434294 AAAATAAGTAAGACCATGGCTGAAAGATGTTATGGCATCATGATA
1 AAAATAAGTAAGACCATAGCTGAAAGACGTTATGACATCATGATA
58434339 AAAATAAGTAAGACCATAGCTGAAAGACGTTATGACATCATG
1 AAAATAAGTAAGACCATAGCTGAAAGACGTTATGACATCATG
58434381 TGAAAACACT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (45 bp):
AAAATAAGTAAGACCATAGCTGAAAGACGTTATGACATCATGATA
Found at i:58445248 original size:13 final size:13
Alignment explanation
Indices: 58445230--58445261 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
58445220 AATCCATAAG
*
58445230 TATTTACTAGAAA
1 TATTTACTAAAAA
58445243 TATTTACTAAAAA
1 TATTTACTAAAAA
58445256 TATTTA
1 TATTTA
58445262 TGGGCTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (13 bp):
TATTTACTAAAAA
Found at i:58446310 original size:41 final size:41
Alignment explanation
Indices: 58446253--58446336 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
58446243 GATGGCTAAA
58446253 TACTTTCAAAGTGATGAATGTGTTTTGGCATGGTTGATCTT
1 TACTTTCAAAGTGATGAATGTGTTTTGGCATGGTTGATCTT
58446294 TACTTTCAAAGTGATGAATGTGTTTTGGCATGGTTGATCTT
1 TACTTTCAAAGTGATGAATGTGTTTTGGCATGGTTGATCTT
58446335 TA
1 TA
58446337 TGTATACATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.44
Consensus pattern (41 bp):
TACTTTCAAAGTGATGAATGTGTTTTGGCATGGTTGATCTT
Found at i:58448306 original size:51 final size:51
Alignment explanation
Indices: 58448230--58448331 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
58448220 ATAAAGCCAT
58448230 GATGTTTTCAATCAATGTCTGAGACTCCCCCATTTGAAGTAATCATATCAA
1 GATGTTTTCAATCAATGTCTGAGACTCCCCCATTTGAAGTAATCATATCAA
58448281 GATGTTTTCAATCAATGTCTGAGACTCCCCCATTTGAAGTAATCATATCAA
1 GATGTTTTCAATCAATGTCTGAGACTCCCCCATTTGAAGTAATCATATCAA
58448332 AAATCTCTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (51 bp):
GATGTTTTCAATCAATGTCTGAGACTCCCCCATTTGAAGTAATCATATCAA
Found at i:58451723 original size:40 final size:41
Alignment explanation
Indices: 58451647--58451723 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
58451637 GGGCATGCGG
* * **
58451647 GGATTTAGCGGCGTTTTTTATTAAGCGCCGTTAAAGATCAA
1 GGATTTAGCGGCGTTTTTGATAAAGCGCCGACAAAGATCAA
*
58451688 GGATTTAGCGGCGTTTTTGATAAATCGCC-ACAAAGA
1 GGATTTAGCGGCGTTTTTGATAAAGCGCCGACAAAGA
58451724 AACCTAAGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 5 0.16
41 26 0.84
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (41 bp):
GGATTTAGCGGCGTTTTTGATAAAGCGCCGACAAAGATCAA
Found at i:58451778 original size:114 final size:114
Alignment explanation
Indices: 58451652--58451874 Score: 254
Period size: 114 Copynumber: 2.0 Consensus size: 114
58451642 TGCGGGGATT
* * * * *
58451652 TAGCGGCGTTTTTTA-TTAAGCGCCGTTAAAGATCAAGGA-TTTAGCGGCGTTTTTGATA-AATC
1 TAGCGGCGTTTTTGAGGT-AGCGCCGCTAAAGATC-AGGACTTTAGCGGCGTTTGT-ATAGAAGC
* * * *
58451714 GCCACAAAGAAACCTAAGACCAACGACGCCGTTTTCTGAGCATTCGGTAACC
63 GCCACAAAGAAACATAAGACAAACGACACCGTTCTCTGAGCATTCGGTAACC
* * *
58451766 TAGCGGCGTTTTTGAGGTAGCGCCGCTAATGTTCAGTACTTTAGCGGCGTTTGTATAGAAGCGCC
1 TAGCGGCGTTTTTGAGGTAGCGCCGCTAAAGATCAGGACTTTAGCGGCGTTTGTATAGAAGCGCC
* * * *
58451831 GCAAATAAACATAAGTCAAACGACACCGTTCTCTGAGTATTCGG
66 ACAAAGAAACATAAGACAAACGACACCGTTCTCTGAGCATTCGG
58451875 GGATTTAGCA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
113 6 0.07
114 83 0.92
115 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (114 bp):
TAGCGGCGTTTTTGAGGTAGCGCCGCTAAAGATCAGGACTTTAGCGGCGTTTGTATAGAAGCGCC
ACAAAGAAACATAAGACAAACGACACCGTTCTCTGAGCATTCGGTAACC
Found at i:58452304 original size:14 final size:15
Alignment explanation
Indices: 58452285--58452327 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
58452275 GGTTTAAGAG
58452285 GTTTAAGGG-TTATA
1 GTTTAAGGGTTTATA
58452299 GTTTAAGGGGTTTTATA
1 GTTTAA-GGG-TTTATA
58452316 GTTTAA-GGTTTA
1 GTTTAAGGGTTTA
58452328 ATGTTTAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 10 0.38
15 5 0.19
17 11 0.42
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (15 bp):
GTTTAAGGGTTTATA
Found at i:58453628 original size:147 final size:146
Alignment explanation
Indices: 58453396--58453743 Score: 350
Period size: 146 Copynumber: 2.4 Consensus size: 146
58453386 AAATGTTGGG
* * * * * * *
58453396 GAAACGACTTCGTTT-GATCGTATATTTAGTGGCGCTTTACTTAAAATGCCACAACATTGTTCTA
1 GAAACGACTGCGTTTCGA-CTTATAGTTAGTGGCGCTTTAATTAAAATGCCGCAAAAATGTTCTA
** * * **
58453460 ACATTTATAGAAACGCTGCCGTTTT-TTAAATGTTATTAGTGG-TGATTT-TTTTAAAACGCCA-
65 ACATTTATAGAAACGAGGCCGTTTTGCT--ATATTATTAGTGGCT--TTTATTCAAAAACGCCAC
* *
58453521 AGGGTTTG-AGGTAAGTGTTGAT
126 A-GGTGTGCA-CTAAGTGTTGAT
* * * *
58453543 GAAGCGACTGCGTTTTGATTTATAGTTAGTGGCGCTTTAATTAAAATGCCGCAAAAATGTTTTAA
1 GAAACGACTGCGTTTCGACTTATAGTTAGTGGCGCTTTAATTAAAATGCCGCAAAAATGTTCTAA
* * *
58453608 CATTTATCGATACGAGGCCGTTTTGCTGTATTATTAGTGGCTTTTATTCAAAAACGCCACAGGTG
66 CATTTATAGAAACGAGGCCGTTTTGCTATATTATTAGTGGCTTTTATTCAAAAACGCCACAGGTG
**
58453673 TGCACTATTTGTTGAT
131 TGCACTAAGTGTTGAT
*
58453689 GAAACGACTGCGTTTCGACTTATAGTTAGTGGCGC-TTATTTATAAATGCCGCAAA
1 GAAACGACTGCGTTTCGACTTATAGTTAGTGGCGCTTTAATTA-AAATGCCGCAAA
58453744 TGATTAATTT
Statistics
Matches: 167, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
145 9 0.05
146 80 0.48
147 75 0.45
148 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (146 bp):
GAAACGACTGCGTTTCGACTTATAGTTAGTGGCGCTTTAATTAAAATGCCGCAAAAATGTTCTAA
CATTTATAGAAACGAGGCCGTTTTGCTATATTATTAGTGGCTTTTATTCAAAAACGCCACAGGTG
TGCACTAAGTGTTGAT
Found at i:58454471 original size:10 final size:10
Alignment explanation
Indices: 58454445--58454475 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
58454435 TTGCAAAATA
58454445 ATTTTTTAAT
1 ATTTTTTAAT
58454455 ATCTTTTTAAT
1 AT-TTTTTAAT
58454466 ATTTTTTAAT
1 ATTTTTTAAT
58454476 TTAACTTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTTTAAT
Found at i:58456072 original size:21 final size:21
Alignment explanation
Indices: 58456046--58456086 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
58456036 AACTTAAAGC
*
58456046 AGAGGCGACAGCGAGGGAAGT
1 AGAGGCGACAGCGAGAGAAGT
*
58456067 AGAGGCTACAGCGAGAGAAG
1 AGAGGCGACAGCGAGAGAAG
58456087 CAGCGATAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.15, G:0.44, T:0.05
Consensus pattern (21 bp):
AGAGGCGACAGCGAGAGAAGT
Found at i:58456680 original size:42 final size:42
Alignment explanation
Indices: 58456538--58456805 Score: 281
Period size: 42 Copynumber: 6.3 Consensus size: 42
58456528 TTTGTGAAAT
* * * **
58456538 AAGCACCGCTAAAGAACACTA-CTATTAGCGGC-ATTTTTGAA
1 AAGCGCCGCTAAAGAACACGATCT-TTAGCGGCGTTTTTTTCA
* ** * *
58456579 CAAGCGCCGTTAAAGAACATTA-CTTTTAGCGGCGTTTTCCTCCA
1 -AAGCGCCGCTAAAGAACACGATC-TTTAGCGGCGTTTT-TTTCA
*
58456623 AAGTGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
* *
58456665 AAGCGCCGCTAAAGAACACGATCTTTAGTGGCATTTTTTTCA
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
* * * *
58456707 AAGCGCCACTAAAGAACATGATCTTTAGCAGCATTTTTTTCA
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
* **
58456749 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTGT
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTT-TCA
*
58456792 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
58456806 TTAGCGACAT
Statistics
Matches: 195, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
42 143 0.73
43 49 0.25
44 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
Found at i:58463840 original size:18 final size:18
Alignment explanation
Indices: 58463817--58463861 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
58463807 AGGAACAACA
58463817 TCTTCTTTTGAAAAATTC
1 TCTTCTTTTGAAAAATTC
58463835 TCTTCTTTTGAAAAATTC
1 TCTTCTTTTGAAAAATTC
58463853 TCTTCTTTT
1 TCTTCTTTT
58463862 TAGAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (18 bp):
TCTTCTTTTGAAAAATTC
Found at i:58470504 original size:28 final size:27
Alignment explanation
Indices: 58470441--58470533 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 27
58470431 TAAAATTACA
58470441 ATTTTTTACAATTTCTAATAATTTTTTT
1 ATTTTTTACAATTTCTAAT-ATTTTTTT
*
58470469 ATAATTTTTACAATCTTTTAATATTTTTTT
1 AT--TTTTTACAAT-TTCTAATATTTTTTT
* * * *
58470499 ATTTTTTAAAATTTCTAACATATTTAT
1 ATTTTTTACAATTTCTAATATTTTTTT
58470526 ATTTTTTA
1 ATTTTTTA
58470534 AAATATATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
27 19 0.34
28 11 0.20
30 20 0.36
31 6 0.11
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTTTTACAATTTCTAATATTTTTTT
Found at i:58470528 original size:27 final size:28
Alignment explanation
Indices: 58470466--58470537 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
58470456 TAATAATTTT
* * * * *
58470466 TTTATAATTTTTACAATCTTTTAATATT
1 TTTATATTTTTTAAAATCTTCTAACATA
*
58470494 TTTTTATTTTTTAAAAT-TTCTAACATA
1 TTTATATTTTTTAAAATCTTCTAACATA
58470521 TTTATATTTTTTAAAAT
1 TTTATATTTTTTAAAAT
58470538 ATATATTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTATATTTTTTAAAATCTTCTAACATA
Found at i:58471072 original size:23 final size:20
Alignment explanation
Indices: 58471025--58471073 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
58471015 AGATATTTTG
58471025 CTTTTATAAAATTTATAAAA
1 CTTTTATAAAATTTATAAAA
* *
58471045 TTTTTATAATAAATTTAGTAATA
1 CTTTTAT-A-AAATTTA-TAAAA
58471068 CTTTTA
1 CTTTTA
58471074 GTTTAATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 1 0.04
22 7 0.30
23 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (20 bp):
CTTTTATAAAATTTATAAAA
Found at i:58472139 original size:14 final size:14
Alignment explanation
Indices: 58472122--58472156 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
58472112 CTCACATTTC
58472122 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
58472136 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
58472150 TATTTCT
1 T-TTTCT
58472157 GCTTCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:58472140 original size:19 final size:18
Alignment explanation
Indices: 58472102--58472146 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
58472092 TACGGTACGC
58472102 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
58472119 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
58472138 TTCTTTTCT
1 TTCTTTTCT
58472147 CCATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:58472857 original size:20 final size:19
Alignment explanation
Indices: 58472834--58472880 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
58472824 TGAGTATTTG
58472834 TAGTAGGTCAAAGTTGTAAT
1 TAGTAGGTCAAA-TTGTAAT
* *
58472854 TAGTAGGTTACATTGTAAT
1 TAGTAGGTCAAATTGTAAT
58472873 TAGTAGGT
1 TAGTAGGT
58472881 TACATTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (19 bp):
TAGTAGGTCAAATTGTAAT
Found at i:58472871 original size:19 final size:19
Alignment explanation
Indices: 58472847--58472893 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
58472837 TAGGTCAAAG
58472847 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
58472866 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
58472885 TTGTGAATT
1 TTGT-AATT
58472894 TGTGTAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (19 bp):
TTGTAATTAGTAGGTTACA
Found at i:58474682 original size:16 final size:17
Alignment explanation
Indices: 58474663--58474694 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
58474653 TTATTAAATC
58474663 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
58474679 ATATATTTAATATTAA
1 ATATATTTAATATTAA
58474695 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:58474758 original size:66 final size:63
Alignment explanation
Indices: 58474687--58474899 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
58474677 AAATATATTT
58474687 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
58474751 AG
62 AG
* * * * * * *
58474753 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
58474813 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
58474873 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
58474900 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:58474773 original size:120 final size:120
Alignment explanation
Indices: 58474649--58474941 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
58474639 AATTATTTTA
* * *
58474649 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
58474712 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
58474769 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
58474834 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
58474889 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
58474942 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:58474801 original size:18 final size:17
Alignment explanation
Indices: 58474770--58474804 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
58474760 ATTATTAAGA
58474770 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
58474787 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
58474805 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:58474918 original size:18 final size:17
Alignment explanation
Indices: 58474890--58474924 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
58474880 ATTATTAAGA
*
58474890 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
58474907 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
58474925 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:58475053 original size:146 final size:148
Alignment explanation
Indices: 58474878--58475150 Score: 498
Period size: 146 Copynumber: 1.9 Consensus size: 148
58474868 ATAAGAATAT
*
58474878 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
58474943 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATT-TTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
58475006 TACCAAAACAAATTTCTGC
130 TACCAAAACAAATTTCTGC
58475025 TAATTATTAAGAA-TTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
58475089 AAATATGATTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
58475151 CAATAATCAT
Statistics
Matches: 122, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
145 5 0.04
146 99 0.81
147 18 0.15
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (148 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATTT
ACCAAAACAAATTTCTGC
Found at i:58475280 original size:44 final size:45
Alignment explanation
Indices: 58475231--58475325 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
58475221 TTACACCTCA
* *
58475231 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
58475275 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
58475320 ATTACA
1 ATTACA
58475326 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:58475325 original size:16 final size:16
Alignment explanation
Indices: 58475306--58475357 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
58475296 GATTTGCTAT
* *
58475306 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
58475322 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
58475338 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
58475354 TACA
1 TACA
58475358 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:58479745 original size:20 final size:18
Alignment explanation
Indices: 58479695--58479746 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
58479685 CTACAAGTTA
58479695 AATATTAAATTAA-ATTC
1 AATATTAAATTAATATTC
*
58479712 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTC
58479732 AATATTAAATTAATA
1 AATATTAAATTAATA
58479747 AAATACTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (18 bp):
AATATTAAATTAATATTC
Found at i:58479988 original size:22 final size:22
Alignment explanation
Indices: 58479961--58480003 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
58479951 ATTGTGCCCA
58479961 GTGGTGTCATCACAAGCGCAAG
1 GTGGTGTCATCACAAGCGCAAG
58479983 GTGGTGTCATCACAAGCGCAA
1 GTGGTGTCATCACAAGCGCAA
58480004 CACCTTTACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.19
Consensus pattern (22 bp):
GTGGTGTCATCACAAGCGCAAG
Found at i:58481130 original size:5 final size:5
Alignment explanation
Indices: 58481120--58481152 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
58481110 TAAATATTTG
58481120 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
58481153 TTGTAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:58481628 original size:20 final size:21
Alignment explanation
Indices: 58481603--58481641 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
58481593 AAAAAGAAAA
58481603 AAATATTT-TTTTTCTCTTAT
1 AAATATTTCTTTTTCTCTTAT
*
58481623 AAATATTTCTTTTTTTCTT
1 AAATATTTCTTTTTCTCTT
58481642 TTTCTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (21 bp):
AAATATTTCTTTTTCTCTTAT
Found at i:58488685 original size:20 final size:20
Alignment explanation
Indices: 58488660--58488698 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
58488650 CAGTTTTGCC
* *
58488660 ACGAACATGGAATGCCCGCT
1 ACGAACATAGAATACCCGCT
58488680 ACGAACATAGAATACCCGC
1 ACGAACATAGAATACCCGC
58488699 CGCGTCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.31, G:0.21, T:0.13
Consensus pattern (20 bp):
ACGAACATAGAATACCCGCT
Found at i:58489381 original size:70 final size:70
Alignment explanation
Indices: 58489036--58489383 Score: 181
Period size: 70 Copynumber: 5.0 Consensus size: 70
58489026 CTAGAGAATA
* * ** * * * *
58489036 TACGTTCCCAGTTGATGTTATAAAAGTTTGTCGGTTTATGATCACAACCTCTAAAAATAGTTATC
1 TACGTTCCCAATTGATGTTATAAAGGTTTACCGGTTTATGATCGCAACCTCCAAAAATAGCTAGC
58489101 GGACC
66 GGACC
* *** * * * *** * * * * *
58489106 TACGCTCCCAACAAATATTCT-AAGAGTTCACAAATTTAAGCTCG-TAGCTCC-AATATAGCTAG
1 TACGTTCCCAATTGATGTTATAAAG-GTTTACCGGTTTATGATCGCAACCTCCAAAAATAGCTAG
* *
58489168 CAGAAC
65 CGGACC
* *
58489174 TACATTCCCAATTGATGTTATAAAGGTTTACCGGTTTATGA-CTGTAACCTCCAAAAATAGCTAG
1 TACGTTCCCAATTGATGTTATAAAGGTTTACCGGTTTATGATC-GCAACCTCCAAAAATAGCTAG
*
58489238 CAGACC
65 CGGACC
* * * * * * * * * * * * *** * *
58489244 TATGCTCCCAGTTGATATTCTACGAGCTCGTA--GGGTTAAGCTTGC-TGGTCC-AACACAGCTA
1 TACGTTCCCAATTGATGTTATA-AAGGT-TTACCGGTTTATGATCGCAACCTCCAAAAATAGCTA
*
58489305 GTGGACC
64 GCGGACC
*
58489312 TACGTTCCCAATTGATGTTATAAAGGTTTACCGATTTATGATCGCAACCTCCAAAAATAGCTAGC
1 TACGTTCCCAATTGATGTTATAAAGGTTTACCGGTTTATGATCGCAACCTCCAAAAATAGCTAGC
58489377 GGACC
66 GGACC
58489382 TA
1 TA
58489384 TGCTTCTAGT
Statistics
Matches: 184, Mismatches: 82, Indels: 24
0.63 0.28 0.08
Matches are distributed among these distances:
66 2 0.01
67 4 0.02
68 75 0.41
69 20 0.11
70 78 0.42
71 3 0.02
72 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (70 bp):
TACGTTCCCAATTGATGTTATAAAGGTTTACCGGTTTATGATCGCAACCTCCAAAAATAGCTAGC
GGACC
Found at i:58489423 original size:276 final size:276
Alignment explanation
Indices: 58488794--58489436 Score: 754
Period size: 276 Copynumber: 2.3 Consensus size: 276
58488784 GGTTTGTCAG
* * *
58488794 TTTATGATCGCAACCTCCAAAAATGGCTTCCGGACCTACGCTTCTAACTAATATTCTAAAAGTTC
1 TTTATGATCGCAACCTCCAAAAATAGCTACCGGACCTACGCTTCTAACTAATATTCTAAGAGTTC
* * * * * *
58488859 ACAGGTTTAAGCTCACAGCTTCAACATAGCTAGCGGACCTACATTTCTAACTGATGTTATAAAGG
66 ACAGGATTAAGCTCACAGCTCCAACATAGCTAGCAGAACTACATTCCCAACTGATGTTATAAAGG
** * *
58488924 TTTTTCGGTTTATGATTGCAACCTCCAAAAATAGTTAGCGAACCTACGCTCCCAGCTAATATTCT
131 TTTACCGGTTTATGACTGCAACCTCCAAAAATAGCTAGCGAACCTACGCTCCCAGCTAATATTCT
* *
58488989 AAGAGCCCGCAGGGTTAAGCTCATAGCTCCAACACAACTAGAGAATATACGTTCCCAGTTGATGT
196 AAGAGCCCGCAGGGTTAAGCTCATAGCTCCAACACAACTAGAGAACATACGTTCCCAATTGATGT
** *
58489054 TATAAAAGTTTGTCGG
261 TATAAAAGTTTACCGA
* * * * * * *
58489070 TTTATGATCACAACCTCTAAAAATAGTTATCGGACCTACGCTCCCAACAAATATTCTAAGAGTTC
1 TTTATGATCGCAACCTCCAAAAATAGCTACCGGACCTACGCTTCTAACTAATATTCTAAGAGTTC
* ** * *
58489135 ACA-AATTTAAGCTCGTAGCTCCAATATAGCTAGCAGAACTACATTCCCAATTGATGTTATAAAG
66 ACAGGA-TTAAGCTCACAGCTCCAACATAGCTAGCAGAACTACATTCCCAACTGATGTTATAAAG
* * * *
58489199 GTTTACCGGTTTATGACTGTAACCTCCAAAAATAGCTAGC-AGACCTATGCTCCCAGTTGATATT
130 GTTTACCGGTTTATGACTGCAACCTCCAAAAATAGCTAGCGA-ACCTACGCTCCCAGCTAATATT
* * * * * * * *
58489263 CTACGAGCTCGTAGGGTTAAGCTTGC-T-GGTCCAACACAGCTAGTGGACCTACGTTCCCAATTG
194 CTAAGAGCCCGCAGGGTTAAGC-T-CATAGCTCCAACACAACTAGAGAACATACGTTCCCAATTG
*
58489326 ATGTTATAAAGGTTTACCGA
257 ATGTTATAAAAGTTTACCGA
* * ** * *
58489346 TTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTATGCTTCTAGTTGATATTCTAAGAGCTC
1 TTTATGATCGCAACCTCCAAAAATAGCTACCGGACCTACGCTTCTAACTAATATTCTAAGAGTTC
** *
58489411 GTAGGATTAAGCTCACAACTCCAACA
66 ACAGGATTAAGCTCACAGCTCCAACA
58489437 CAAGTAACGA
Statistics
Matches: 300, Mismatches: 62, Indels: 10
0.81 0.17 0.03
Matches are distributed among these distances:
275 1 0.00
276 295 0.98
277 3 0.01
278 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (276 bp):
TTTATGATCGCAACCTCCAAAAATAGCTACCGGACCTACGCTTCTAACTAATATTCTAAGAGTTC
ACAGGATTAAGCTCACAGCTCCAACATAGCTAGCAGAACTACATTCCCAACTGATGTTATAAAGG
TTTACCGGTTTATGACTGCAACCTCCAAAAATAGCTAGCGAACCTACGCTCCCAGCTAATATTCT
AAGAGCCCGCAGGGTTAAGCTCATAGCTCCAACACAACTAGAGAACATACGTTCCCAATTGATGT
TATAAAAGTTTACCGA
Found at i:58489451 original size:138 final size:139
Alignment explanation
Indices: 58488793--58489459 Score: 623
Period size: 138 Copynumber: 4.8 Consensus size: 139
58488783 TGGTTTGTCA
* ** * * * * *
58488793 GTTTATGATCGCAACCTCCAAAAATGGCTTCCGGACCTACGCTTCTAACTAATATTCTAAAAGTT
1 GTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGCT
* * * * * * * * *
58488858 CACAGGTTTAAGCTCACAGCTTCAACA-TAGCTAGCGGACCTACATTTCTAACTGATGTTATAAA
66 CGCAGGATTAAGCTCACAGCTCCAACACAAGCTAGCGAACCTACGTTCCCAATTGATGTTATAAA
**
58488922 GGTTTTTCG
131 GGTTTACCG
* * * *
58488931 GTTTATGATTGCAACCTCCAAAAATAGTTAGCGAACCTACGCTCCCAGCTAATATTCTAAGAGCC
1 GTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGCT
* * * ** *
58488996 CGCAGGGTTAAGCTCATAGCTCCAACACAA-CTAGAGAATATACGTTCCCAGTTGATGTTATAAA
66 CGCAGGATTAAGCTCACAGCTCCAACACAAGCTAGCGAACCTACGTTCCCAATTGATGTTATAAA
* **
58489060 AGTTTGTCG
131 GGTTTACCG
* * * * * * *
58489069 GTTTATGATCACAACCTCTAAAAATAGTTATCGGACCTACGCTCCCAACAAATATTCTAAGAGTT
1 GTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGCT
* * ** * * *
58489134 CACA-AATTTAAGCTCGTAGCTCCAATA-TAGCTAGCAGAA-CTACATTCCCAATTGATGTTATA
66 CGCAGGA-TTAAGCTCACAGCTCCAACACAAGCTAGC-GAACCTACGTTCCCAATTGATGTTATA
58489196 AAGGTTTACCG
129 AAGGTTTACCG
* * * * * *
58489207 GTTTATGA-CTGTAACCTCCAAAAATAGCTAGCAGACCTATGCTCCCAGTTGATATTCTACGAGC
1 GTTTATGATC-GCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGC
* * ** * * * *
58489271 TCGTAGGGTTAAGCTTGCTGGTCCAACAC-AGCTAGTGGACCTACGTTCCCAATTGATGTTATAA
65 TCGCAGGATTAAGCTCACAGCTCCAACACAAGCTAGCGAACCTACGTTCCCAATTGATGTTATAA
58489335 AGGTTTACCG
130 AGGTTTACCG
* * * * * *
58489345 ATTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTATGCTTCTAGTTGATATTCTAAGAGCT
1 GTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGCT
* * *
58489410 CGTAGGATTAAGCTCACAACTCCAACACAAG-TAACGAACCTACG-TCCCAA
66 CGCAGGATTAAGCTCACAGCTCCAACACAAGCTAGCGAACCTACGTTCCCAA
58489460 ATTATGGTAT
Statistics
Matches: 429, Mismatches: 90, Indels: 21
0.79 0.17 0.04
Matches are distributed among these distances:
137 10 0.02
138 412 0.96
139 7 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (139 bp):
GTTTATGATCGCAACCTCCAAAAATAGCTAGCGGACCTACGCTCCCAGCTAATATTCTAAGAGCT
CGCAGGATTAAGCTCACAGCTCCAACACAAGCTAGCGAACCTACGTTCCCAATTGATGTTATAAA
GGTTTACCG
Found at i:58506606 original size:27 final size:25
Alignment explanation
Indices: 58506550--58506614 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 25
58506540 TTCGTATATG
*
58506550 ATTATTTTAACTTGCTTTATAGATT
1 ATTATTTTAAGTTGCTTTATAGATT
*
58506575 ATTATTTTAAGTTGCTTTATATATT
1 ATTATTTTAAGTTGCTTTATAGATT
58506600 ATTTTATTTTAAGTT
1 A--TTATTTTAAGTT
58506615 ATTCTACATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 24 0.67
27 12 0.33
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.60
Consensus pattern (25 bp):
ATTATTTTAAGTTGCTTTATAGATT
Found at i:58506625 original size:27 final size:26
Alignment explanation
Indices: 58506551--58506637 Score: 79
Period size: 25 Copynumber: 3.3 Consensus size: 26
58506541 TCGTATATGA
* * * *
58506551 TTATTTTAACTTGCTTTATAGATTA-
1 TTATTTTAAGTTGATTTACATATTAC
* * *
58506576 TTATTTTAAGTTGCTTTATATATTATT
1 TTATTTTAAGTTGATTTACATATTA-C
58506603 TTATTTTAAGTT-ATTCTACATATTAC
1 TTATTTTAAGTTGATT-TACATATTAC
58506629 TTATTTTAA
1 TTATTTTAA
58506638 AATTAACCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
25 23 0.43
26 11 0.20
27 20 0.37
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.59
Consensus pattern (26 bp):
TTATTTTAAGTTGATTTACATATTAC
Found at i:58522282 original size:45 final size:44
Alignment explanation
Indices: 58522165--58522284 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 44
58522155 TAGAGCAAGA
* * * * ** * *
58522165 TGAAGCTACAAATCATATATCCCTAAAGTTACAGTGGATCAGAT
1 TGAAGATACAAATCCTATATCCTTGAAGTTGTAATGGATCAAAT
*
58522209 TGAAGCTACAAATCCTATATCCTTGAAGTTGTAATGGATCAAAT
1 TGAAGATACAAATCCTATATCCTTGAAGTTGTAATGGATCAAAT
*
58522253 TGAAGATACCAATTCCTATA-CCATTGAAGTTG
1 TGAAGATA-CAAATCCTATATCC-TTGAAGTTG
58522285 CAGTGGGTCG
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 46 0.71
45 19 0.29
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (44 bp):
TGAAGATACAAATCCTATATCCTTGAAGTTGTAATGGATCAAAT
Found at i:58522377 original size:94 final size:93
Alignment explanation
Indices: 58522086--58522729 Score: 593
Period size: 94 Copynumber: 6.9 Consensus size: 93
58522076 CCACAAATCT
* ** * ** * *
58522086 TATACCCCTAAAGTTACAGTGGGTCAGATTGAATTTACCATAGTGAATCTTATCTCCCTGAAGTT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATAG-AAATCTTATCTCCCTGAAGTT
* * * *
58522151 GCAATAGAGCAAGATGAAGCTACAAATCA
65 GCAGTGGAGCAAGATGAAGCTACAATTCC
* * * ** * * * * *
58522180 TATATCCCTAAAGTTACAGTGGATCAGATTGAAGCTAC-----AAATCCTATATCCTTGAAGTTG
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATAGAAATCTTATCTCCCTGAAGTTG
* * * *
58522240 TAATGGATCAA-ATTGAAGATACCAATTCC
66 CAGTGGAGCAAGA-TGAAGCTA-CAATTCC
** * * * * *
58522269 TATACCATTGAAGTTGCAGTGGGTCGGAATAAAACTAAAATAGAGAATCTTATCTCCATGAAGTT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATAGA-AATCTTATCTCCCTGAAGTT
*
58522334 GCAGTGGAGCAAGATGAAGATACAATTCC
65 GCAGTGGAGCAAGATGAAGCTACAATTCC
* * * * * *
58522363 TATACCCCTAAAGTTGCAGTGGGTTAGAATGAAACAACGATGGTGAATCTTATCTCCCTAAAGTT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATAG-AAATCTTATCTCCCTGAAGTT
*
58522428 GCAGTGGAGCAAGATGAAGCTACAAATCC
65 GCAGTGGAGCAAGATGAAGCTACAATTCC
* *
58522457 TATACCCCTAAAGTTGCAGTGGGTTGG-ATTAAATCTACCATAGTAAATCTTATCTCCCTGAAGT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAG-AAATCTTATCTCCCTGAAGT
* *
58522521 TACAGTGGAGCAAGATGAAGTTACAATTCC
64 TGCAGTGGAGCAAGATGAAGCTACAATTCC
* * * *
58522551 TATACCCCTGAAGTTGCAGTAGGTTGGATTG-AACTTACGATAGCAAATCTTATCTCCCTGAAGT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAAC-TACAATAG-AAATCTTATCTCCCTGAAGT
* *
58522615 TGCAGTGGAGCAAGTTGAAGCTACAATTCT
64 TGCAGTGGAGCAAGATGAAGCTACAATTCC
* * * * * * *
58522645 TATACCTCTGAAGTTGCAGTGGGTTGGTATGAAGCTACAACACCAAATCTTATCTCCTTGAAGTT
1 TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATA-GAAATCTTATCTCCCTGAAGTT
* * *
58522710 GTAATGGAGCAAAATGAAGC
65 GCAGTGGAGCAAGATGAAGC
58522730 CGTGATAGTA
Statistics
Matches: 456, Mismatches: 79, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
87 1 0.00
88 33 0.07
89 32 0.07
93 6 0.01
94 346 0.76
95 37 0.08
96 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (93 bp):
TATACCCCTAAAGTTGCAGTGGGTTGGAATGAAACTACAATAGAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAAGATGAAGCTACAATTCC
Found at i:58522395 original size:44 final size:44
Alignment explanation
Indices: 58522329--58522666 Score: 141
Period size: 44 Copynumber: 7.3 Consensus size: 44
58522319 TATCTCCATG
58522329 AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
1 AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
** * * *
58522373 AAGTTGCAGTGG-GTTAGAATGAA-ACAACGATGGTGAATCT-TATCTCCCTA
1 AAGTTGCAGTGGAGCAAG-ATGAAGA-TACAAT--T---CCTATA-C-CCCTA
* *
58522423 AAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTA
1 AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
*** * * *
58522467 AAGTTGCAGTGG-GTTGGATTAA-ATCTACCATAGTAAATCTTAT-CTCCCTG
1 AAGTTGCAGTGGAGCAAGATGAAGA--TA-CA-A-T---TCCTATAC-CCCTA
* * *
58522517 AAGTTACAGTGGAGCAAGATGAAGTTACAATTCCTATACCCCTG
1 AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
* * * * * * * *
58522561 AAGTTGCAGTAGGTTGGATTGAACTTACGATAGCAAATCTTAT-CTCCCTG
1 AAGTTGCAGT-GG-AGCA-AG-A-TGAAGATA-CAATTCCTATAC-CCCTA
* * * * *
58522611 AAGTTGCAGTGGAGCAAGTTGAAGCTACAATTCTTATACCTCTG
1 AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
58522655 AAGTTGCAGTGG
1 AAGTTGCAGTGG
58522667 GTTGGTATGA
Statistics
Matches: 217, Mismatches: 45, Indels: 64
0.67 0.14 0.20
Matches are distributed among these distances:
43 10 0.05
44 84 0.39
45 14 0.06
46 6 0.03
47 3 0.01
48 7 0.03
49 14 0.06
50 70 0.32
51 9 0.04
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
AAGTTGCAGTGGAGCAAGATGAAGATACAATTCCTATACCCCTA
Done.