Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 189 of 222
Found at i:60361273 original size:21 final size:22
Alignment explanation
Indices: 60361231--60361273 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
60361221 GGGTTGTTAC
* **
60361231 ATTTCTTATTTTACTATTTTTG
1 ATTTCTTATATTACTAAATTTG
60361253 ATTTCTT-TATTACTAAATTTG
1 ATTTCTTATATTACTAAATTTG
60361274 TTCATTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.23, C:0.09, G:0.05, T:0.63
Consensus pattern (22 bp):
ATTTCTTATATTACTAAATTTG
Found at i:60361630 original size:19 final size:19
Alignment explanation
Indices: 60361606--60361678 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
60361596 AATCTTCAGG
60361606 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60361625 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
60361644 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60361663 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
60361679 AGATATGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60361704 original size:22 final size:21
Alignment explanation
Indices: 60361606--60361704 Score: 84
Period size: 19 Copynumber: 4.9 Consensus size: 21
60361596 AATCTTCAGG
*
60361606 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
60361625 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
60361644 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
60361663 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
60361685 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
60361705 TTAATTTGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
19 45 0.66
22 12 0.18
23 11 0.16
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:60366268 original size:16 final size:17
Alignment explanation
Indices: 60366247--60366281 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
60366237 AGGCCAAACA
60366247 AATCAAAT-CAAGATTC
1 AATCAAATACAAGATTC
60366263 AATCAAATACAAGATTC
1 AATCAAATACAAGATTC
60366280 AA
1 AA
60366282 GGACGATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.54, C:0.17, G:0.06, T:0.23
Consensus pattern (17 bp):
AATCAAATACAAGATTC
Found at i:60372770 original size:25 final size:25
Alignment explanation
Indices: 60372742--60372859 Score: 91
Period size: 25 Copynumber: 4.6 Consensus size: 25
60372732 CTTATGAGTG
*
60372742 TCCCGATTTATGGCTCTTTAGAGCT
1 TCCCGATTAATGGCTCTTTAGAGCT
* * *
60372767 TCCCAATTAAAGGCTCATTCATGAGCT
1 TCCCGATTAATGGCTC-TTTA-GAGCT
*
60372794 TCCCGATTAATGGCT-TTTCGGAGCT
1 TCCCGATTAATGGCTCTTT-AGAGCT
**
60372819 TCCCG-TTACATGGCT-TACATGAGCT
1 TCCCGATTA-ATGGCTCTTTA-GAGCT
60372844 TCCC-ATTATATGGCTC
1 TCCCGATTA-ATGGCTC
60372860 GAGGGAGTGC
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
24 3 0.04
25 50 0.68
26 3 0.04
27 18 0.24
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTTAGAGCT
Found at i:60373871 original size:18 final size:18
Alignment explanation
Indices: 60373837--60373872 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60373827 TATGGGGGTT
* *
60373837 ACATTTTTTTAATTATTA
1 ACATTTTTTGAAATATTA
60373855 ACATTTTTTGAAATATTA
1 ACATTTTTTGAAATATTA
60373873 TATTAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (18 bp):
ACATTTTTTGAAATATTA
Found at i:60388540 original size:117 final size:117
Alignment explanation
Indices: 60388334--60388569 Score: 472
Period size: 117 Copynumber: 2.0 Consensus size: 117
60388324 TTTTTCGTCC
60388334 CCTTTATTACATTAGGGCTTTTGGGTTCTTCCATATCGGATCCAATTACAAGTACTTTTCGGGCT
1 CCTTTATTACATTAGGGCTTTTGGGTTCTTCCATATCGGATCCAATTACAAGTACTTTTCGGGCT
60388399 TTTAACCCAATATTTTATAATTTGATCCACCCTAATATTTTTTTTCCTATTT
66 TTTAACCCAATATTTTATAATTTGATCCACCCTAATATTTTTTTTCCTATTT
60388451 CCTTTATTACATTAGGGCTTTTGGGTTCTTCCATATCGGATCCAATTACAAGTACTTTTCGGGCT
1 CCTTTATTACATTAGGGCTTTTGGGTTCTTCCATATCGGATCCAATTACAAGTACTTTTCGGGCT
60388516 TTTAACCCAATATTTTATAATTTGATCCACCCTAATATTTTTTTTCCTATTT
66 TTTAACCCAATATTTTATAATTTGATCCACCCTAATATTTTTTTTCCTATTT
60388568 CC
1 CC
60388570 CCAAAAAAAT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (117 bp):
CCTTTATTACATTAGGGCTTTTGGGTTCTTCCATATCGGATCCAATTACAAGTACTTTTCGGGCT
TTTAACCCAATATTTTATAATTTGATCCACCCTAATATTTTTTTTCCTATTT
Found at i:60390530 original size:28 final size:28
Alignment explanation
Indices: 60390498--60390554 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
60390488 TTTTTGAGAG
60390498 TAAGAACATCTGACTCTAGGTTGATTAA
1 TAAGAACATCTGACTCTAGGTTGATTAA
60390526 TAAGAACATCTGACTCTAGGTTGATTAA
1 TAAGAACATCTGACTCTAGGTTGATTAA
60390554 T
1 T
60390555 TGAAATCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (28 bp):
TAAGAACATCTGACTCTAGGTTGATTAA
Found at i:60391210 original size:30 final size:30
Alignment explanation
Indices: 60391165--60391229 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
60391155 CACAAGAGAG
* * * * *
60391165 TGTGTCTAGCCCATGTGGCACACATGGGCT
1 TGTGTCCAGCCCATGTAGAACACATAGGCA
*
60391195 TGTGTCCAGCTCATGTAGAACACATAGGCA
1 TGTGTCCAGCCCATGTAGAACACATAGGCA
60391225 TGTGT
1 TGTGT
60391230 ACAAGCCGTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (30 bp):
TGTGTCCAGCCCATGTAGAACACATAGGCA
Found at i:60393029 original size:31 final size:35
Alignment explanation
Indices: 60392994--60393064 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 35
60392984 AGAAACAACC
60392994 ATAAAAATAAA-AAAAT-AGT-TCAA-AAAATAA-A
1 ATAAAAATAAACAAAATAAGTCT-AAGAAAATAACA
60393025 AT-AAAATAAACAAAATAAGTCTAAGAAAATAACA
1 ATAAAAATAAACAAAATAAGTCTAAGAAAATAACA
60393059 ATAAAA
1 ATAAAA
60393065 CAACTAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
30 8 0.24
31 7 0.21
32 5 0.15
33 8 0.24
34 3 0.09
35 3 0.09
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.18
Consensus pattern (35 bp):
ATAAAAATAAACAAAATAAGTCTAAGAAAATAACA
Found at i:60394543 original size:17 final size:17
Alignment explanation
Indices: 60394502--60394535 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
60394492 ATGATAATAA
*
60394502 AATAAAACT-AAGGAAT
1 AATAAAAATAAAGGAAT
60394518 AATAAAAATAAAGGAAT
1 AATAAAAATAAAGGAAT
60394535 A
1 A
60394536 TAATAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.68, C:0.03, G:0.12, T:0.18
Consensus pattern (17 bp):
AATAAAAATAAAGGAAT
Found at i:60394662 original size:23 final size:23
Alignment explanation
Indices: 60394634--60394677 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
60394624 CATGAACAGA
*
60394634 ATAATAA-TAAACAAATGGAAAGC
1 ATAATAAGAAAACAAA-GGAAAGC
60394657 ATAATAAGAAAACAAAGGAAA
1 ATAATAAGAAAACAAAGGAAA
60394678 ATACATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (23 bp):
ATAATAAGAAAACAAAGGAAAGC
Found at i:60394982 original size:13 final size:13
Alignment explanation
Indices: 60394964--60394994 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
60394954 AAGAGGAGAG
60394964 GGTGTGGGGTGAC
1 GGTGTGGGGTGAC
*
60394977 GGTGTGGGGTGAG
1 GGTGTGGGGTGAC
60394990 GGTGT
1 GGTGT
60394995 TGGATTTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.03, G:0.65, T:0.26
Consensus pattern (13 bp):
GGTGTGGGGTGAC
Found at i:60395731 original size:20 final size:21
Alignment explanation
Indices: 60395702--60395759 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
60395692 TTATTTTTTA
*
60395702 TAATTAAAAATTAAT-TGAAT
1 TAATTAAAAAATAATATGAAT
*
60395722 TAATTCAAAAATAATATGAAAT
1 TAATTAAAAAATAATATG-AAT
*
60395744 AAAGTTAAAAGAATAA
1 TAA-TTAAAA-AATAA
60395760 GTAGAATGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.43
21 2 0.07
22 5 0.17
23 5 0.17
24 5 0.17
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (21 bp):
TAATTAAAAAATAATATGAAT
Found at i:60398697 original size:25 final size:25
Alignment explanation
Indices: 60398669--60398748 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
60398659 CTTCCAAGCA
* *
60398669 AAATATCAGGAAGCTCATGAGAGCT
1 AAATATCAGGAAGCTCGTGAGAGCC
* *
60398694 AAATAACAGGAAGCTTGTGAGAGCC
1 AAATATCAGGAAGCTCGTGAGAGCC
* * *
60398719 AAGTATCGGGAAGCTCGCGAGAGCC
1 AAATATCAGGAAGCTCGTGAGAGCC
60398744 AAATA
1 AAATA
60398749 CTGGGATGCT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.16
Consensus pattern (25 bp):
AAATATCAGGAAGCTCGTGAGAGCC
Found at i:60399753 original size:42 final size:42
Alignment explanation
Indices: 60399671--60399830 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
60399661 AACTCGCATA
* * * *
60399671 ATGCC-ATATACCAGATATGGTCTTACATGCTATCAT-ATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACG-AATC-TCATATCG
**
60399713 ATGCCAATATCCCAGTTATGGTCTTACACGAATCTCATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAATCTCATATCG
* * * *
60399755 ATGCAAATTTCCCAAACATGGTCTTACATGAATCTCATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGAATCTCATATCG
* *
60399797 AGGCCAATGTCCCAGACATGGTCTTACACGAATC
1 ATGCCAATATCCCAGACATGGTCTTACACGAATC
60399831 ACATCTCAGA
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
41 1 0.01
42 79 0.78
43 21 0.21
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCAATATCCCAGACATGGTCTTACACGAATCTCATATCG
Found at i:60401368 original size:16 final size:16
Alignment explanation
Indices: 60401347--60401428 Score: 61
Period size: 16 Copynumber: 5.5 Consensus size: 16
60401337 AACGAAATTT
60401347 TCATACAATATTTCTA
1 TCATACAATATTTCTA
* ***
60401363 TCATACTATAGACCT-
1 TCATACAATATTTCTA
60401378 T-A-A-AATAATTTCTA
1 TCATACAAT-ATTTCTA
60401392 TCATA-AAT-TTTCT-
1 TCATACAATATTTCTA
*
60401405 TCATACGATATTTCTA
1 TCATACAATATTTCTA
60401421 TCATACAA
1 TCATACAA
60401429 CTCTCCCCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
12 2 0.04
13 9 0.18
14 9 0.18
15 7 0.14
16 22 0.45
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.41
Consensus pattern (16 bp):
TCATACAATATTTCTA
Found at i:60407725 original size:25 final size:25
Alignment explanation
Indices: 60407697--60407776 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
60407687 GTAAACGAGC
60407697 AGCTCTTTCGAGCCATATAACGGGA
1 AGCTCTTTCGAGCCATATAACGGGA
* * *
60407722 AGCTCATGT-GAGCTATACAACGGGA
1 AGCTC-TTTCGAGCCATATAACGGGA
* * * *
60407747 AGCTCTTGCGAGCCAAATATCGGAA
1 AGCTCTTTCGAGCCATATAACGGGA
60407772 AGCTC
1 AGCTC
60407777 AAGAGAGCCA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 1 0.02
25 40 0.93
26 2 0.05
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (25 bp):
AGCTCTTTCGAGCCATATAACGGGA
Found at i:60407796 original size:50 final size:50
Alignment explanation
Indices: 60407697--60407822 Score: 128
Period size: 50 Copynumber: 2.5 Consensus size: 50
60407687 GTAAACGAGC
* * * * * *
60407697 AGCTCTTTCGAGCCATATAACGGGAAGCTCATGTGAGCTATACAACGGGA
1 AGCTCTTGCGAGCCAAATAACGGAAAGCTCAAGAGAGCCATACAACGGGA
* *
60407747 AGCTCTTGCGAGCCAAATATCGGAAAGCTCAAGAGAGCCATTA-ATCGGGA
1 AGCTCTTGCGAGCCAAATAACGGAAAGCTCAAGAGAGCCA-TACAACGGGA
* * *
60407797 AGCTCATGAGAGCTAAATAACAGGAA
1 AGCTCTTGCGAGCCAAATAAC-GGAA
60407823 GTTCGTAAGA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
50 56 0.90
51 6 0.10
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (50 bp):
AGCTCTTGCGAGCCAAATAACGGAAAGCTCAAGAGAGCCATACAACGGGA
Found at i:60407822 original size:25 final size:25
Alignment explanation
Indices: 60407713--60407823 Score: 98
Period size: 25 Copynumber: 4.4 Consensus size: 25
60407703 TTCGAGCCAT
* *
60407713 ATAACGGGAAGCTCATGTGAGCTAT
1 ATAACGGGAAGCTCATGAGAGCTAA
* * * *
60407738 ACAACGGGAAGCTCTTGCGAGCCAA
1 ATAACGGGAAGCTCATGAGAGCTAA
* * * *
60407763 ATATCGGAAAGCTCAAGAGAGC-CA
1 ATAACGGGAAGCTCATGAGAGCTAA
*
60407787 TTAATCGGGAAGCTCATGAGAGCTAA
1 ATAA-CGGGAAGCTCATGAGAGCTAA
*
60407813 ATAACAGGAAG
1 ATAACGGGAAG
60407824 TTCGTAAGAC
Statistics
Matches: 65, Mismatches: 19, Indels: 4
0.74 0.22 0.05
Matches are distributed among these distances:
24 3 0.05
25 58 0.89
26 4 0.06
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (25 bp):
ATAACGGGAAGCTCATGAGAGCTAA
Found at i:60407850 original size:75 final size:75
Alignment explanation
Indices: 60407706--60407847 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
60407696 CAGCTCTTTC
* * * * ** *
60407706 GAGCCATATAACGGGAAGCTCATGTGAGCTATACAACGGGAAGCTCTTGCGAGCCAAATATCGGA
1 GAGCCATATAACGGGAAGCTCATGAGAGCTAAACAACAGGAAGCTCGTAAGACCCAAATATCGGA
60407771 AAGCTCAAGA
66 AAGCTCAAGA
* * *
60407781 GAGCCAT-TAATCGGGAAGCTCATGAGAGCTAAATAACAGGAAGTTCGTAAGACCCAAGTATCAG
1 GAGCCATATAA-CGGGAAGCTCATGAGAGCTAAACAACAGGAAGCTCGTAAGACCCAAATATC-G
60407845 GAA
64 GAA
60407848 GCTTGTGAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
74 3 0.05
75 48 0.87
76 4 0.07
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.18
Consensus pattern (75 bp):
GAGCCATATAACGGGAAGCTCATGAGAGCTAAACAACAGGAAGCTCGTAAGACCCAAATATCGGA
AAGCTCAAGA
Found at i:60413007 original size:40 final size:40
Alignment explanation
Indices: 60412950--60413168 Score: 174
Period size: 40 Copynumber: 5.5 Consensus size: 40
60412940 TAATTATTGA
* *
60412950 TGATTGCACAAACGTGCCCCTATTGGTACTTCAGTACCCT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCT
* * *
60412990 TAATTGCACATACGTGCCCATGTTTGTACTTC-GATACCCT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCAG-TACCCT
* * * * ** ** *
60413030 TGATTGTACAGACATGCCCTTGCTTGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCT
60413070 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACACC-
1 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTAC-CCT
* * * ** * ** *
60413110 TAAATGCACTTATTTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCT
*
60413150 TGAATGCAC-TAACGTGCCC
1 TGATTGCACAT-ACGTGCCC
60413169 TTGATTGTAC
Statistics
Matches: 142, Mismatches: 32, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
39 4 0.03
40 135 0.95
41 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCT
Found at i:60413148 original size:120 final size:120
Alignment explanation
Indices: 60412950--60413179 Score: 302
Period size: 120 Copynumber: 1.9 Consensus size: 120
60412940 TAATTATTGA
*
60412950 TGATTGCACAAACGTGCCCCTATTGGTACTTCAGTACCCTTAATTGCACATACGTGCCCATGTTT
1 TGATTGCACAAACGTGCCCCTATTGGTACTTCAGTACCCTTAAATGCACATACGTGCCCATGTTT
* * * *
60413015 GTACTTCGATACCCTTGATTGTAC-AGACATGCCCTTGCTTGTACTTTGGTACCCC
66 GTACTTCGATACCCCTGAATGCACTA-ACATGCCCTTGATTGTACTTTGGTACCCC
* * * ** *
60413070 TGATTGCACATACGTGCCCCTATTTGTACTTCAGTACACC-TAAATGCACTTATTTGCCCCTGTT
1 TGATTGCACAAACGTGCCCCTATTGGTACTTCAGTAC-CCTTAAATGCACATACGTGCCCATGTT
* * *
60413134 TGTACTTTGGTACCCCTGAATGCACTAACGTGCCCTTGATTGTACT
65 TGTACTTCGATACCCCTGAATGCACTAACATGCCCTTGATTGTACT
60413180 CTAGTAATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
120 91 0.97
121 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (120 bp):
TGATTGCACAAACGTGCCCCTATTGGTACTTCAGTACCCTTAAATGCACATACGTGCCCATGTTT
GTACTTCGATACCCCTGAATGCACTAACATGCCCTTGATTGTACTTTGGTACCCC
Found at i:60417864 original size:24 final size:24
Alignment explanation
Indices: 60417832--60417882 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
60417822 GATATTAAAG
60417832 TCGTCGAAACCTTTCTTTCATCAC
1 TCGTCGAAACCTTTCTTTCATCAC
60417856 TCGTCGAAACCTTTCTTTCATCAC
1 TCGTCGAAACCTTTCTTTCATCAC
60417880 TCG
1 TCG
60417883 ATCAAAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.33, G:0.10, T:0.37
Consensus pattern (24 bp):
TCGTCGAAACCTTTCTTTCATCAC
Found at i:60418541 original size:30 final size:30
Alignment explanation
Indices: 60418507--60418566 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
60418497 CACAAAATAG
60418507 GTAAAATGACCAAAATACCCTTAAAGGGTA
1 GTAAAATGACCAAAATACCCTTAAAGGGTA
60418537 GTAAAATGACCAAAATACCCTTAAAGGGTA
1 GTAAAATGACCAAAATACCCTTAAAGGGTA
60418567 AAATGACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.20
Consensus pattern (30 bp):
GTAAAATGACCAAAATACCCTTAAAGGGTA
Found at i:60418783 original size:26 final size:28
Alignment explanation
Indices: 60418744--60418821 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
60418734 AAGTAAACTT
* * *
60418744 TTACTGGCAGCTTTGTTGCGATA-A-TG
1 TTACTGGCAACTTTGCTGCGATACATTA
60418770 TTACTGGCAACTTTGCTGCGATACTATTA
1 TTACTGGCAACTTTGCTGCGATAC-ATTA
*
60418799 TTACTGGCAACTTTGCTGTGATA
1 TTACTGGCAACTTTGCTGCGATA
60418822 TTGGTGAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 21 0.47
28 1 0.02
29 23 0.51
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (28 bp):
TTACTGGCAACTTTGCTGCGATACATTA
Found at i:60418964 original size:28 final size:28
Alignment explanation
Indices: 60418930--60418983 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
60418920 CTGTACTGAA
60418930 ACTGTATTGGGCTAAGGCCCACACTGTT
1 ACTGTATTGGGCTAAGGCCCACACTGTT
60418958 ACTGTATTGGGCTAAGGCCCACACTG
1 ACTGTATTGGGCTAAGGCCCACACTG
60418984 CACTGTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (28 bp):
ACTGTATTGGGCTAAGGCCCACACTGTT
Found at i:60418988 original size:33 final size:33
Alignment explanation
Indices: 60418930--60419016 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 33
60418920 CTGTACTGAA
60418930 ACTGTATTGGGCTAAGG-CC-CA---CACTGTT
1 ACTGTATTGGGCTAAGGCCCACACTGCACTGTT
60418958 ACTGTATTGGGCTAAGGCCCACACTGCACTGTT
1 ACTGTATTGGGCTAAGGCCCACACTGCACTGTT
* * * * *
60418991 ATTGAATAGGGCTCAGGCCCAGACTG
1 ACTGTATTGGGCTAAGGCCCACACTG
60419017 TTACTGCTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
28 17 0.35
29 2 0.04
30 2 0.04
33 28 0.57
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.25
Consensus pattern (33 bp):
ACTGTATTGGGCTAAGGCCCACACTGCACTGTT
Found at i:60418993 original size:28 final size:28
Alignment explanation
Indices: 60418930--60418994 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
60418920 CTGTACTGAA
*
60418930 ACTGTATTGGGCTAAGGCCCACACTGTT
1 ACTGTATTGGGCTAAGGCCCACACTGTC
60418958 ACTGTATTGGGCTAAGGCCCACACTG-C
1 ACTGTATTGGGCTAAGGCCCACACTGTC
60418985 ACTGTTATTG
1 ACTG-TATTG
60418995 AATAGGGCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 4 0.11
28 31 0.89
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (28 bp):
ACTGTATTGGGCTAAGGCCCACACTGTC
Found at i:60427264 original size:41 final size:40
Alignment explanation
Indices: 60427219--60427321 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 40
60427209 TGGTTCAGTA
*
60427219 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAAACATATAGTCTGAAATATTT
* * * *
60427260 CACCGGCATTAAGCCTGCTAAACATTTTGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAAACATATAGTCTGAAATATTT
*
60427301 CACCGGCAATAAGCCTGCTAA
1 CACCGGC-ATTAGCCTGCTAA
60427322 GCTCTAAGCC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
40 2 0.04
41 50 0.93
42 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAAACATATAGTCTGAAATATTT
Found at i:60427335 original size:41 final size:41
Alignment explanation
Indices: 60427219--60427335 Score: 103
Period size: 41 Copynumber: 2.9 Consensus size: 41
60427209 TGGTTCAGTA
* * * * * *
60427219 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAAACATTA-AGCCTGAAGTGTTT
* ** *
60427260 CACCGGCATTAAGCCTGCTAAACATTTTGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAAACATTAAGCCTGAAGTGTTT
*
60427301 CACCGGCAATAAGCCTGCTAAGC-TCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAAACAT-TAAGCCTGAA
60427336 AATCTCAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
40 1 0.02
41 60 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAAACATTAAGCCTGAAGTGTTT
Found at i:60430218 original size:26 final size:26
Alignment explanation
Indices: 60430160--60430269 Score: 96
Period size: 26 Copynumber: 4.2 Consensus size: 26
60430150 ATGGGGTTGG
* ** *
60430160 GATACTGTTACTAGCAATTTTG-AGC
1 GATACTGTTACTGGCAGCTTTGCTGC
*
60430185 GATACTGTTGCTGGCAGCTTTGCTGC
1 GATACTGTTACTGGCAGCTTTGCTGC
* * *
60430211 GATACTGTTACTAGTAGCTTTCCTGC
1 GATACTGTTACTGGCAGCTTTGCTGC
* *
60430237 GATACTATTATTACTGGCAACTTTGCTGC
1 GATAC---TGTTACTGGCAGCTTTGCTGC
60430266 GATA
1 GATA
60430270 TTGGTGAGTT
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
25 18 0.27
26 29 0.43
29 20 0.30
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (26 bp):
GATACTGTTACTGGCAGCTTTGCTGC
Found at i:60444946 original size:128 final size:128
Alignment explanation
Indices: 60444706--60444985 Score: 377
Period size: 128 Copynumber: 2.2 Consensus size: 128
60444696 ACATTTGTAC
* * * *
60444706 TTTTCCTCTAAAACTTTTACTCCCCTCCCATCCCACCCCTATCTACCCCAAACTCATTTACCCCC
1 TTTTCC-CCAAAACTTTTACTCCCCTCCAATCCCACCCCCATCTACCCCAAACCCATTTACCCCC
* * * * *
60444771 ATTTTACTCCCCCATTTATTTTCCGCTAAAATTTTACTTTCGCAAAACCCTCAAAACTTTTTAT
65 ATTTTACTCCCCCATTTAATTTCCGCTAAAAGTTTACTTCCCCAAAACCCTCAAAACTTTTTAA
* *
60444835 TTTTCCCCAAAACTTTTACTCCCCTCCAATCTCACCCCCATCTACCCTAAACCCATTT-CCCCCA
1 TTTTCCCCAAAACTTTTACTCCCCTCCAATCCCACCCCCATCTACCCCAAACCCATTTACCCCCA
* *
60444899 TTTTACTCCCTCTATTTAATTTCC-TTCAAAAGTTTAC-TCCCCAAAAACCCTCAAAACTTTTTA
66 TTTTACTCCC-CCATTTAATTTCCGCT-AAAAGTTTACTTCCCC-AAAACCCTCAAAACTTTTTA
60444962 A
128 A
*
60444963 TTTCCCCCAAAACTTTTACTCCC
1 TTTTCCCCAAAACTTTTACTCCC
60444986 TCCCACTTTC
Statistics
Matches: 134, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
127 20 0.15
128 108 0.81
129 6 0.04
ACGTcount: A:0.26, C:0.38, G:0.01, T:0.35
Consensus pattern (128 bp):
TTTTCCCCAAAACTTTTACTCCCCTCCAATCCCACCCCCATCTACCCCAAACCCATTTACCCCCA
TTTTACTCCCCCATTTAATTTCCGCTAAAAGTTTACTTCCCCAAAACCCTCAAAACTTTTTAA
Found at i:60451434 original size:2 final size:2
Alignment explanation
Indices: 60451429--60451460 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
60451419 CTCTCACTTC
*
60451429 CT CT CT CT CT CT CT CT CT CT CT CT CT CA CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
60451461 TTTCCCCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.03, C:0.50, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:60456375 original size:18 final size:18
Alignment explanation
Indices: 60456352--60456388 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60456342 AAATTAGTTC
60456352 TATACTTCTAGCTAGGTG
1 TATACTTCTAGCTAGGTG
60456370 TATACTTCTAGCTAGGTG
1 TATACTTCTAGCTAGGTG
60456388 T
1 T
60456389 TAATTTGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.41
Consensus pattern (18 bp):
TATACTTCTAGCTAGGTG
Found at i:60456903 original size:29 final size:30
Alignment explanation
Indices: 60456870--60456936 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
60456860 AAATCAAAAT
*
60456870 TTTATATATAAAATTACACA-AAACTA-AA
1 TTTATATACAAAATTACACATAAACTATAA
* *
60456898 GTTTATGTACATAATTACACATTAAACTATAA
1 -TTTATATACAAAATTACACA-TAAACTATAA
60456930 TTTATAT
1 TTTATAT
60456937 TGGTATTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 17 0.55
31 12 0.39
32 2 0.06
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (30 bp):
TTTATATACAAAATTACACATAAACTATAA
Found at i:60458017 original size:6 final size:6
Alignment explanation
Indices: 60458006--60458032 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
60457996 CCATATCATC
60458006 TCCCAT TCCCAT TCCCAT TCCCAT TCC
1 TCCCAT TCCCAT TCCCAT TCCCAT TCC
60458033 AAATATTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
TCCCAT
Found at i:60461359 original size:15 final size:16
Alignment explanation
Indices: 60461324--60461361 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
60461314 TTATCATGTG
60461324 TTTATCTTTTTAAAATA
1 TTTAT-TTTTTAAAATA
*
60461341 TTTATTTTTTAATAT-
1 TTTATTTTTTAAAATA
60461356 TTTATT
1 TTTATT
60461362 ATATTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 9 0.45
17 5 0.25
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTTTTTAAAATA
Found at i:60463180 original size:130 final size:130
Alignment explanation
Indices: 60462854--60463245 Score: 401
Period size: 130 Copynumber: 3.0 Consensus size: 130
60462844 CAATAAATTG
* * * *
60462854 TTGTTAAATATTATAATATTAGCAATGACTTTAAAATGTTGTTACATAATTTAATTTTTTACCTA
1 TTGTTAAACATTAAAATATTAGCAATAACTTTAAAATGTTGTTACATAATTTAA-TTTTTACTTA
* * * * * *
60462919 TTAACCGTAACAACACAATTTGTCGTTGTGAATTATTAATAAAATGTGTAACAACCAAACAAGTT
65 TTAATCGCAACGACACGATTTGTCATTGTGAATTATTAATAAAATTTGTAACAACCAAACAAGTT
*
60462984 G
130 A
* * *** * * * *
60462985 TT-TCTAAACGTTAAAATATTAACTGCAACATTAAAATGTTGTTGCATAAATTAATTTTATGCTT
1 TTGT-TAAACATTAAAATATTAGCAATAACTTTAAAATGTTGTTACATAATTTAATTTT-TACTT
* * * * * *
60463049 ATTCATCGCAACGACATGATTTGTCATTGTGAATTCTTAATAAAATTTGTAACAA-GACACGAGT
64 ATTAATCGCAACGACACGATTTGTCATTGTGAATTATTAATAAAATTTGTAACAACCAAACAAGT
60463113 TA
129 TA
* **
60463115 TTGTTAAACATTAAAATATTAGCAATAACTTTAAAATGTCGTTATGTAATTTAATATTTTACTTA
1 TTGTTAAACATTAAAATATTAGCAATAACTTTAAAATGTTGTTACATAATTTAAT-TTTTACTTA
* * * * * * * *
60463180 TTAATAGCAATGATACGATTTGTCATTGTGAATTATTAATAAATTTTTTAACGACAAAATAAGTT
65 TTAATCGCAACGACACGATTTGTCATTGTGAATTATTAATAAAATTTGTAACAACCAAACAAGTT
60463245 A
130 A
60463246 GTAACAACCT
Statistics
Matches: 205, Mismatches: 51, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
130 104 0.51
131 101 0.49
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (130 bp):
TTGTTAAACATTAAAATATTAGCAATAACTTTAAAATGTTGTTACATAATTTAATTTTTACTTAT
TAATCGCAACGACACGATTTGTCATTGTGAATTATTAATAAAATTTGTAACAACCAAACAAGTTA
Found at i:60464747 original size:21 final size:23
Alignment explanation
Indices: 60464716--60464757 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
60464706 AATTATAATA
60464716 AAAAGAAAAAAAGAAA-CAAACG
1 AAAAGAAAAAAAGAAATCAAACG
60464738 AAAA-AAAAAAAGAAATCAAA
1 AAAAGAAAAAAAGAAATCAAA
60464758 TAAGAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.81, C:0.07, G:0.10, T:0.02
Consensus pattern (23 bp):
AAAAGAAAAAAAGAAATCAAACG
Found at i:60468717 original size:11 final size:12
Alignment explanation
Indices: 60468676--60468722 Score: 53
Period size: 11 Copynumber: 4.0 Consensus size: 12
60468666 AATAATAAAG
60468676 ATATT-TATTAT
1 ATATTATATTAT
* *
60468687 GTTTTATTATTAT
1 ATATTA-TATTAT
60468700 ATATTATATTAT
1 ATATTATATTAT
60468712 -TATTATATTAT
1 ATATTATATTAT
60468723 CTATAAAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 14 0.47
12 6 0.20
13 10 0.33
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (12 bp):
ATATTATATTAT
Found at i:60469570 original size:37 final size:36
Alignment explanation
Indices: 60469529--60469601 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 36
60469519 TAATATTGAC
* * *
60469529 TTGAAAATGGAAAAGTGAATTTTGAATTGAATTGTGA
1 TTGAAAATGAAAAAGTGAA-ATTGAATTGAAATGTGA
*
60469566 TTGAAAGTGAAAAAGTGAAATTGAATTGAAATGTGA
1 TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
60469602 AATTGGAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 15 0.47
37 17 0.53
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.32
Consensus pattern (36 bp):
TTGAAAATGAAAAAGTGAAATTGAATTGAAATGTGA
Found at i:60469578 original size:36 final size:37
Alignment explanation
Indices: 60469529--60469601 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
60469519 TAATATTGAC
* *
60469529 TTGAAAATGG-AAAAGTGAATTTTGAATTGAATTGTGA
1 TTGAAAATGGAAAAAGTGAA-ATTGAATTGAAATGTGA
*
60469566 TTGAAAGT-GAAAAAGTGAAATTGAATTGAAATGTGA
1 TTGAAAATGGAAAAAGTGAAATTGAATTGAAATGTGA
60469602 AATTGGAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 16 0.50
37 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.32
Consensus pattern (37 bp):
TTGAAAATGGAAAAAGTGAAATTGAATTGAAATGTGA
Found at i:60477107 original size:17 final size:17
Alignment explanation
Indices: 60477087--60477122 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
60477077 CCATAAAAAG
*
60477087 AACTAAAAATAACAATA
1 AACTAAAAATAAAAATA
*
60477104 AACTTAAAATAAAAATA
1 AACTAAAAATAAAAATA
60477121 AA
1 AA
60477123 AATTGTAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (17 bp):
AACTAAAAATAAAAATA
Found at i:60478232 original size:41 final size:41
Alignment explanation
Indices: 60478187--60478278 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
60478177 ACTGACACTT
* * *
60478187 AGCCTGCTAGACATATAGTCTGAAATGTTTCACCGGCATTA
1 AGCCTGCTAGACATAAAATCTGAAATGTTTCACCGGCAATA
* *
60478228 AGCCTGCTAGACATAAAATCTGAATTGTTTCACTGGCAATA
1 AGCCTGCTAGACATAAAATCTGAAATGTTTCACCGGCAATA
60478269 AGCCTGCTAG
1 AGCCTGCTAG
60478279 GTGCTAAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAATCTGAAATGTTTCACCGGCAATA
Found at i:60479061 original size:79 final size:79
Alignment explanation
Indices: 60478911--60479068 Score: 187
Period size: 79 Copynumber: 2.0 Consensus size: 79
60478901 ACAAATACAA
**
60478911 TATACATACCTTTAATCAAACCCAAAAGTTTATACATGTATATTTATATATATATTCCTGCCTTA
1 TATACATACCTTTAATCAAACCCAAAAGTTTATACATGTATATACATATATATATT-CTGCCTTA
*
60478976 TGTATACATATATAT
65 TATATACATATATAT
* * * *
60478991 TATACATACCTTTGATTAAA-CCAAGAA-TTTATACATGTATATACATATATGTATT-TGAATCT
1 TATACATACCTTTAATCAAACCCAA-AAGTTTATACATGTATATACATATATATATTCTG--CCT
*
60479053 TGTATATACATATATA
63 TATATATACATATATA
60479069 ACCCTCATAC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
79 45 0.67
80 20 0.30
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (79 bp):
TATACATACCTTTAATCAAACCCAAAAGTTTATACATGTATATACATATATATATTCTGCCTTAT
ATATACATATATAT
Found at i:60481804 original size:13 final size:13
Alignment explanation
Indices: 60481769--60481812 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
60481759 AAATAGGACG
*
60481769 AATAAAATAATAA
1 AATAAAACAATAA
*
60481782 TAAT-AGACAATAA
1 -AATAAAACAATAA
60481795 AATAAAACAATAA
1 AATAAAACAATAA
60481808 AATAA
1 AATAA
60481813 TAAACTCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 3 0.12
13 20 0.77
14 3 0.12
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (13 bp):
AATAAAACAATAA
Found at i:60481807 original size:23 final size:23
Alignment explanation
Indices: 60481755--60481799 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
60481745 AGAAGAAACG
*
60481755 ACAAAAATAGGACGAATAAAATA
1 ACAATAATAGGACGAATAAAATA
*
60481778 ATAATAATA-GAC-AATAAAATA
1 ACAATAATAGGACGAATAAAATA
60481799 A
1 A
60481800 AACAATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 3 0.15
23 7 0.35
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.18
Consensus pattern (23 bp):
ACAATAATAGGACGAATAAAATA
Found at i:60482271 original size:5 final size:5
Alignment explanation
Indices: 60482261--60482292 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
60482251 AATAAATATG
60482261 AATAA AATAA AATAA AATAAA AATAA AATAA A
1 AATAA AATAA AATAA AAT-AA AATAA AATAA A
60482293 TTAGGGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:60482288 original size:11 final size:11
Alignment explanation
Indices: 60482243--60482292 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
60482233 AAACAATAAT
60482243 AAATAATAAAT-
1 AAATAA-AAATA
**
60482254 AAATATGAATA
1 AAATAAAAATA
60482265 AAAT-AAAATA
1 AAATAAAAATA
60482275 AAATAAAAATA
1 AAATAAAAATA
60482286 AAATAAA
1 AAATAAA
60482293 TTAGGGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 11 0.33
11 22 0.67
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:60492870 original size:19 final size:20
Alignment explanation
Indices: 60492843--60492882 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
60492833 AAATAAATTA
*
60492843 AAGAAATGAATTAAA-AAGG
1 AAGAAATGAATAAAATAAGG
*
60492862 AAGAGATGAATAAAATAAGG
1 AAGAAATGAATAAAATAAGG
60492882 A
1 A
60492883 GGGAAGAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGAAATGAATAAAATAAGG
Found at i:60494383 original size:27 final size:27
Alignment explanation
Indices: 60494352--60494529 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60494342 TAAATTGTAC
60494352 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60494379 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60494405 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60494433 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60494461 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60494488 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60494515 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60494530 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60494466 original size:82 final size:81
Alignment explanation
Indices: 60494353--60494508 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60494343 AAATTGTACA
* *
60494353 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60494417 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60494434 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60494499 TGCGAGTTGA
65 TGCGAATTGA
60494509 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60494520 original size:82 final size:81
Alignment explanation
Indices: 60494349--60494529 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60494339 GATTAAATTG
* *
60494349 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60494414 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60494430 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60494494 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60494512 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60494530 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60497648 original size:23 final size:23
Alignment explanation
Indices: 60497622--60497669 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
60497612 TCCTTTTTTT
60497622 AAATTCTAATTTTCTAGGATAAA
1 AAATTCTAATTTTCTAGGATAAA
60497645 AAATTCTAATTTTCTAGGATAAA
1 AAATTCTAATTTTCTAGGATAAA
60497668 AA
1 AA
60497670 CCAACAGCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (23 bp):
AAATTCTAATTTTCTAGGATAAA
Found at i:60504697 original size:3 final size:3
Alignment explanation
Indices: 60504689--60504717 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
60504679 GGGTTACAAA
60504689 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
60504718 GTAAGTTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:60506742 original size:36 final size:37
Alignment explanation
Indices: 60506702--60506772 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
60506692 TTTTCTACCA
* * * *
60506702 AAGTTTTTC-TTTAAGTTTATGGAATATGTTCATCCC
1 AAGTTTCTCTTTTAAGTTCATGGAAAATGTCCATCCC
60506738 AAGTTTCTCTTTTAAGTTCATGGAAAATGTCCATC
1 AAGTTTCTCTTTTAAGTTCATGGAAAATGTCCATC
60506773 TACAATGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 8 0.27
37 22 0.73
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (37 bp):
AAGTTTCTCTTTTAAGTTCATGGAAAATGTCCATCCC
Found at i:60507913 original size:21 final size:19
Alignment explanation
Indices: 60507889--60507943 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
60507879 ATTTCCATGG
60507889 TATCAATACAAATTAGAAAAA
1 TATCAATACAAATT--AAAAA
* * *
60507910 TATCAATACTAAGTAAAAT
1 TATCAATACAAATTAAAAA
60507929 TATCAATACTAAATT
1 TATCAATAC-AAATT
60507944 TGTAGTCTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 13 0.46
20 3 0.11
21 12 0.43
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.31
Consensus pattern (19 bp):
TATCAATACAAATTAAAAA
Found at i:60510964 original size:20 final size:20
Alignment explanation
Indices: 60510939--60510977 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
60510929 ACTCAATCGA
*
60510939 AGATAATTAATTATTTAATT
1 AGATAATTAAGTATTTAATT
*
60510959 AGATAATTAGGTATTTAAT
1 AGATAATTAAGTATTTAAT
60510978 CGATCATAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (20 bp):
AGATAATTAAGTATTTAATT
Found at i:60511474 original size:33 final size:34
Alignment explanation
Indices: 60511425--60511489 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
60511415 TTTTTGTACA
*
60511425 TAATTAAAATATTTTTATTTTTGAAT-TTTTTAGT
1 TAATTAAAATAATTTTATTTTT-AATATTTTTAGT
60511459 TAATT-AAATAATTTTATTTTTAATATTTTTA
1 TAATTAAAATAATTTTATTTTTAATATTTTTA
60511490 CTTACATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 3 0.10
33 21 0.72
34 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (34 bp):
TAATTAAAATAATTTTATTTTTAATATTTTTAGT
Found at i:60524710 original size:50 final size:49
Alignment explanation
Indices: 60524600--60524849 Score: 234
Period size: 50 Copynumber: 4.9 Consensus size: 49
60524590 ACATTAAGAG
* *
60524600 GATGAG-A-TCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCATTGA
1 GATGAGAAGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA-C--CGA
* *
60524651 GATTATGAGAGGTCCCATGTAAGACCATGTCTGGCACATGGCGTTGGCACCGA
1 G---ATGAGAAGTCCCATGTAAGACCATGTCTGG-ACATGGCATTGGCACCGA
* * *
60524704 GATGAGAGGTCCCATGTAAGACCAAGTCTGAGACATGGCGTTGGCACCGA
1 GATGAGAAGTCCCATGTAAGACCATGTCTG-GACATGGCATTGGCACCGA
** * * *
60524754 GATGAGAAGTCCCCCGTAAGACCATGTCTAGGACATGACATGGGCACCTA
1 GATGAGAAGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGA
* * * * *
60524804 TATGAGAACTGCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GATGAGAAGTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA
60524850 GTACAAGAAA
Statistics
Matches: 168, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
50 122 0.73
51 3 0.02
53 3 0.02
54 5 0.03
55 3 0.02
56 32 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
GATGAGAAGTCCCATGTAAGACCATGTCTGGACATGGCATTGGCACCGA
Found at i:60539518 original size:3 final size:3
Alignment explanation
Indices: 60539510--60539584 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
60539500 TAATATTTTC
60539510 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
60539558 ATT ATT ATT ACT ACT ATT TTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
60539585 TGTTTTTTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:60541481 original size:27 final size:26
Alignment explanation
Indices: 60541445--60541670 Score: 308
Period size: 27 Copynumber: 8.4 Consensus size: 26
60541435 CCCCAAAATA
60541445 GGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGACCAAAATACCC-CATAG
*
60541472 GGTAAAATGACCGAAATATCCCTCATAG
1 GGTAAAATGACCAAAATA-CCC-CATAG
60541500 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCC-ATAG
* * * *
60541527 GGTAAAATCATCGAAATACACCATAG
1 GGTAAAATGACCAAAATACCCCATAG
*
60541553 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCAAAATA-CCCCATAG
60541580 GGTAAAATGACCAAAATACCGCCATAG
1 GGTAAAATGACCAAAATACC-CCATAG
*
60541607 GGTAAAATGACCAAAATACCCCATAA
1 GGTAAAATGACCAAAATACCCCATAG
* *
60541633 GGTAAAATGACCGAAATACCCTTATAG
1 GGTAAAATGACCAAAATACCC-CATAG
60541660 GGTAAAATGAC
1 GGTAAAATGAC
60541671 TATTATGGCC
Statistics
Matches: 180, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
26 48 0.27
27 106 0.59
28 26 0.14
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (26 bp):
GGTAAAATGACCAAAATACCCCATAG
Found at i:60541580 original size:53 final size:53
Alignment explanation
Indices: 60541445--60541670 Score: 328
Period size: 53 Copynumber: 4.2 Consensus size: 53
60541435 CCCCAAAATA
*
60541445 GGTAAAATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATATCCCTCATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATA-CCC-CATAG
* * * *
60541500 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATCATCGAAATACACCATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCATAG
* *
60541553 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATACCGCCATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACC-CCATAG
* *
60541607 GGTAAAATGACCAAAATA-CCCCATAAGGTAAAATGACCGAAATACCCTTATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCC-CATAG
60541660 GGTAAAATGAC
1 GGTAAAATGAC
60541671 TATTATGGCC
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
52 1 0.01
53 87 0.56
54 25 0.16
55 41 0.27
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (53 bp):
GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCATAG
Found at i:60541607 original size:80 final size:80
Alignment explanation
Indices: 60541445--60541670 Score: 346
Period size: 80 Copynumber: 2.8 Consensus size: 80
60541435 CCCCAAAATA
*
60541445 GGTAAAATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATATCCCTCATAGGGTAAAATGA
1 GGTAAAATCACCAAAATACCC-CATAGGGTAAAATGACCGAAATA-CCCTCATAGGGTAAAATGA
60541510 CCAAAATACCCCTATAG
64 CCAAAATACCCCTATAG
* * * *
60541527 GGTAAAATCATCGAAATACACCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACC
1 GGTAAAATCACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACC
60541592 AAAATACCGCC-ATAG
66 AAAATACC-CCTATAG
* * *
60541607 GGTAAAATGACCAAAATACCCCATAAGGTAAAATGACCGAAATACCCTTATAGGGTAAAATGAC
1 GGTAAAATCACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGAC
60541671 TATTATGGCC
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 89 0.68
81 25 0.19
82 17 0.13
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (80 bp):
GGTAAAATCACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACC
AAAATACCCCTATAG
Found at i:60549245 original size:22 final size:22
Alignment explanation
Indices: 60549217--60549259 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
60549207 ATCCTCAATA
60549217 TGTAGCCTTGAAAAAGATAAGT
1 TGTAGCCTTGAAAAAGATAAGT
60549239 TGTAGCCTTGAAAAAGATAAG
1 TGTAGCCTTGAAAAAGATAAG
60549260 GAAAGAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (22 bp):
TGTAGCCTTGAAAAAGATAAGT
Found at i:60552107 original size:9 final size:9
Alignment explanation
Indices: 60552093--60552119 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
60552083 TAGGAACTTT
60552093 CTCTATTAA
1 CTCTATTAA
60552102 CTCTATTAA
1 CTCTATTAA
60552111 CTCTATTAA
1 CTCTATTAA
60552120 GGCAGGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (9 bp):
CTCTATTAA
Found at i:60553190 original size:28 final size:28
Alignment explanation
Indices: 60553158--60553211 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
60553148 ACAAATTGAA
60553158 TCTTGGAAAGAAAAAATTCCTCAAGTCG
1 TCTTGGAAAGAAAAAATTCCTCAAGTCG
60553186 TCTTGGAAAGAAAAAATTCCTCAAGT
1 TCTTGGAAAGAAAAAATTCCTCAAGT
60553212 GGTCGAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (28 bp):
TCTTGGAAAGAAAAAATTCCTCAAGTCG
Found at i:60554883 original size:17 final size:17
Alignment explanation
Indices: 60554861--60554898 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
60554851 AATGTCAAGG
60554861 TCGTCTTTTATAAGTAA
1 TCGTCTTTTATAAGTAA
60554878 TCGTCTTTTATAAGTAA
1 TCGTCTTTTATAAGTAA
60554895 TCGT
1 TCGT
60554899 GGCTTAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.47
Consensus pattern (17 bp):
TCGTCTTTTATAAGTAA
Found at i:60555888 original size:40 final size:40
Alignment explanation
Indices: 60555833--60555921 Score: 169
Period size: 40 Copynumber: 2.2 Consensus size: 40
60555823 TAATCCACCC
60555833 AGCACAAGTCCATTGAAACCTGAAATTAAGAAATCAAATT
1 AGCACAAGTCCATTGAAACCTGAAATTAAGAAATCAAATT
60555873 AGCACAAGTCCATTGAAACCTGAAATTAAGAAATCAAATT
1 AGCACAAGTCCATTGAAACCTGAAATTAAGAAATCAAATT
60555913 AGCAGCAAG
1 AGCA-CAAG
60555922 GCTGAAAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.20
Consensus pattern (40 bp):
AGCACAAGTCCATTGAAACCTGAAATTAAGAAATCAAATT
Found at i:60566217 original size:19 final size:19
Alignment explanation
Indices: 60566158--60566217 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
60566148 TTGGTTTAAA
60566158 ATTTTATATATATATTA-TT
1 ATTTTATATAT-TATTATTT
*
60566177 GTTTTA-ATAGTT-TATATGTT
1 ATTTTATATA-TTAT-TAT-TT
60566197 ATTTTATATATTATTATTT
1 ATTTTATATATTATTATTT
60566216 AT
1 AT
60566218 ATTAAACTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 10 0.30
20 12 0.36
21 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
ATTTTATATATTATTATTT
Found at i:60569580 original size:43 final size:43
Alignment explanation
Indices: 60569500--60569583 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
60569490 GCCAACAACT
*
60569500 TGACTGCCTCCGAACGTACCAACACCCAAAGTGTGAATACTGC
1 TGACCGCCTCCGAACGTACCAACACCCAAAGTGTGAATACTGC
* * * * *
60569543 TGACCGCCTCCGGACGTACTAACATCCAGAGTTTGAATACT
1 TGACCGCCTCCGAACGTACCAACACCCAAAGTGTGAATACT
60569584 CCAATAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (43 bp):
TGACCGCCTCCGAACGTACCAACACCCAAAGTGTGAATACTGC
Found at i:60577536 original size:25 final size:25
Alignment explanation
Indices: 60577492--60577587 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
60577482 CCTCTACTGC
* * *
60577492 TTCTTTGATCCTCTACTGGTGTTGG
1 TTCTTTGTTCCTCTGCTGGTGCTGG
* *
60577517 TTCTTTGTTCTTCTGGTGGTGCTGG
1 TTCTTTGTTCCTCTGCTGGTGCTGG
*
60577542 TTCTTTGTTCCTCTGCTGGTGCTGT
1 TTCTTTGTTCCTCTGCTGGTGCTGG
60577567 TTCTTTGTTCCTCTGCTGGTG
1 TTCTTTGTTCCTCTGCTGGTG
60577588 TTTTGTTCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.02, C:0.21, G:0.26, T:0.51
Consensus pattern (25 bp):
TTCTTTGTTCCTCTGCTGGTGCTGG
Found at i:60577560 original size:19 final size:19
Alignment explanation
Indices: 60577536--60577599 Score: 58
Period size: 25 Copynumber: 3.1 Consensus size: 19
60577526 CTTCTGGTGG
60577536 TGCTGGTTCTTTGTTCCTC
1 TGCTGGTTCTTTGTTCCTC
60577555 TGCTGGTGCTGTTTCTTTGTTCCTC
1 TGC---TG--G-TTCTTTGTTCCTC
60577580 TGCTGGTGT-TTTGTTCCTC
1 TGCTGGT-TCTTTGTTCCTC
60577599 T
1 T
60577600 TCTCCACCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
19 15 0.39
20 2 0.05
22 4 0.11
24 1 0.03
25 16 0.42
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.53
Consensus pattern (19 bp):
TGCTGGTTCTTTGTTCCTC
Found at i:60578981 original size:28 final size:28
Alignment explanation
Indices: 60578913--60579000 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
60578903 TCAGAGCTAG
* **
60578913 GTTTATGTTAAATAAATGTGTATCTAATAT
1 GTTTATGTTAAACAAATG-GTAAATAA-AT
*
60578943 GTGTATGTTAAACAAATGGTAAATAAAT
1 GTTTATGTTAAACAAATGGTAAATAAAT
*
60578971 GTTTATGTTAAACAAATTGTAAATAAAT
1 GTTTATGTTAAACAAATGGTAAATAAAT
60578999 GT
1 GT
60579001 GTATAAATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 30 0.58
29 6 0.12
30 16 0.31
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (28 bp):
GTTTATGTTAAACAAATGGTAAATAAAT
Found at i:60579548 original size:13 final size:13
Alignment explanation
Indices: 60579496--60579548 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
60579486 AAACACTCAA
60579496 ATTTTTCAAAAGC
1 ATTTTTCAAAAGC
* * *
60579509 ACTTCTCAAAAGA
1 ATTTTTCAAAAGC
*
60579522 ACTTTTTC-ACAGC
1 A-TTTTTCAAAAGC
60579535 ATTTTTCAAAAGC
1 ATTTTTCAAAAGC
60579548 A
1 A
60579549 ATGAAGAACT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
12 6 0.20
13 20 0.67
14 4 0.13
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (13 bp):
ATTTTTCAAAAGC
Found at i:60584860 original size:33 final size:33
Alignment explanation
Indices: 60584823--60584932 Score: 148
Period size: 33 Copynumber: 3.3 Consensus size: 33
60584813 TACTCTATGT
*
60584823 TTGGTGTGTTGGTTGGATTAGCTCTTTTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
60584856 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
** * * *
60584889 TTGGTGTGTTGGAGGGATTGGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
60584922 TCTGGTGTGTT
1 T-TGGTGTGTT
60584933 TTGGAGGGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
33 59 0.87
34 9 0.13
ACGTcount: A:0.12, C:0.10, G:0.37, T:0.41
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:60584941 original size:36 final size:36
Alignment explanation
Indices: 60584883--60584969 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
60584873 TTAGCTCTTA
**
60584883 TGAGCAT-TGGTGTG--TTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
60584916 TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
*
60584952 TGAGCATCTAGTGTGTTT
1 TGAGCATCTGGTGTGTTT
60584970 GGTTGGACTA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
33 7 0.15
34 7 0.15
36 34 0.71
ACGTcount: A:0.15, C:0.10, G:0.38, T:0.37
Consensus pattern (36 bp):
TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
Found at i:60586501 original size:19 final size:19
Alignment explanation
Indices: 60586465--60586502 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60586455 ATCTCATCCA
* *
60586465 TGTGTGACACATGGCCACG
1 TGTGTGACACACGACCACG
60586484 TGTGTGACACACGACCACG
1 TGTGTGACACACGACCACG
60586503 CGACACGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (19 bp):
TGTGTGACACACGACCACG
Found at i:60591883 original size:14 final size:14
Alignment explanation
Indices: 60591864--60591902 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
60591854 AATGACTAAT
60591864 AGAATACAATGTGG
1 AGAATACAATGTGG
*
60591878 AGAATA-AAAGTGG
1 AGAATACAATGTGG
60591891 AGAATACAATGT
1 AGAATACAATGT
60591903 TGAGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.49, C:0.05, G:0.26, T:0.21
Consensus pattern (14 bp):
AGAATACAATGTGG
Found at i:60596002 original size:41 final size:41
Alignment explanation
Indices: 60595957--60596271 Score: 423
Period size: 41 Copynumber: 7.7 Consensus size: 41
60595947 GGTTTTAAAA
* *
60595957 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * **
60595998 CCTAGCAGGCTAAGTGCCGGTGATTTGGACCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
*
60596039 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60596080 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGACTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60596121 TCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60596162 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTATGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60596203 CCTAGCAGGCTAAGTGCTGGTAATCTGAATTAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60596244 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
60596272 TTTATATTAA
Statistics
Matches: 237, Mismatches: 36, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
41 232 0.98
42 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
Found at i:60598129 original size:35 final size:35
Alignment explanation
Indices: 60598079--60598148 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
60598069 ACTAGCTGTC
* * *
60598079 TGATTCTAGTTTATATCAGGATACATGGATTACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
*
60598114 TGATTCTAGTATATATCAAGATACGTGGATAACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
60598149 ATATGACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (35 bp):
TGATTCTAGTATATATCAAGATACATGGATAACCA
Found at i:60599055 original size:41 final size:41
Alignment explanation
Indices: 60599010--60599324 Score: 405
Period size: 41 Copynumber: 7.7 Consensus size: 41
60599000 GGTTTTAAAA
* *
60599010 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* ** *
60599051 CCTAGCAGGCTAAGTGCCGGTGATTTGAACCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* *
60599092 CCTAGCAGGCTAAGTGCCGATGATCTGAATTAGGCTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * * *
60599133 CCTAGTAGGCTAAGTGCCGGTGAACTGGATTAGACTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60599174 TCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60599215 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTATGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60599256 CCTAGCAGGCTAAGTGCTGGTAATCTGAATTAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
* * *
60599297 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
60599325 TTTATATTAA
Statistics
Matches: 233, Mismatches: 40, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
41 228 0.98
42 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAG
Found at i:60601183 original size:35 final size:35
Alignment explanation
Indices: 60601133--60601202 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
60601123 ACTAGCTGTC
* * *
60601133 TGATTCTAGTTTATATCAGGATACATGGATTACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
*
60601168 TGATTCTAGTATATATCAAGATACGTGGATAACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
60601203 ATATGACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (35 bp):
TGATTCTAGTATATATCAAGATACATGGATAACCA
Found at i:60603624 original size:9 final size:9
Alignment explanation
Indices: 60603608--60603677 Score: 104
Period size: 9 Copynumber: 7.8 Consensus size: 9
60603598 GGTATTTTTC
60603608 GGTAATTCG
1 GGTAATTCG
*
60603617 GTTAATTCG
1 GGTAATTCG
*
60603626 GTTAATTCG
1 GGTAATTCG
* *
60603635 GTTAATTCA
1 GGTAATTCG
60603644 GGTAATTCG
1 GGTAATTCG
60603653 GGTAATTCG
1 GGTAATTCG
60603662 GGTAATTCG
1 GGTAATTCG
60603671 GGTAATT
1 GGTAATT
60603678 TTTAACCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:60603855 original size:12 final size:12
Alignment explanation
Indices: 60603838--60603862 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60603828 AGTAATTTCG
60603838 GGTCGGTTAACC
1 GGTCGGTTAACC
60603850 GGTCGGTTAACC
1 GGTCGGTTAACC
60603862 G
1 G
60603863 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:60604192 original size:38 final size:40
Alignment explanation
Indices: 60604129--60604216 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 40
60604119 AAAAATTATA
* * *
60604129 TTTAATACAATAAAATATTTATTATATTTAT-TTA-TATT
1 TTTAATATAATAAAACATTTATTATATTTATGGTAGTATT
* * *
60604167 TTTAATATAATGAAACATTTGTTATATTTATGGTAGTTTT
1 TTTAATATAATAAAACATTTATTATATTTATGGTAGTATT
60604207 TTTAATATAA
1 TTTAATATAA
60604217 ATATTTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 27 0.64
39 2 0.05
40 13 0.31
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (40 bp):
TTTAATATAATAAAACATTTATTATATTTATGGTAGTATT
Found at i:60607804 original size:3 final size:3
Alignment explanation
Indices: 60607796--60607830 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
60607786 CCATAAAATA
60607796 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
60607831 GCTTCATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:60611262 original size:19 final size:19
Alignment explanation
Indices: 60611238--60611274 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60611228 TTAGTAATCC
*
60611238 CACATTGCTAATATATTTT
1 CACATTGCTAACATATTTT
60611257 CACATTGCTAACATATTT
1 CACATTGCTAACATATTT
60611275 AAAATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (19 bp):
CACATTGCTAACATATTTT
Found at i:60613081 original size:18 final size:17
Alignment explanation
Indices: 60613050--60613106 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
60613040 GGGTGAGAAG
60613050 TAAAAGTTTATGGGAAAA
1 TAAAAGTTTATGGG-AAA
*
60613068 TAAAAAGTTT-TGGGGAA
1 T-AAAAGTTTATGGGAAA
60613085 TAAAAGTTTGA-GGGAAA
1 TAAAAGTTT-ATGGGAAA
60613102 GTAAA
1 -TAAA
60613107 TAGTAGAGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
16 8 0.24
17 8 0.24
18 9 0.27
19 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.26
Consensus pattern (17 bp):
TAAAAGTTTATGGGAAA
Found at i:60613100 original size:16 final size:16
Alignment explanation
Indices: 60613050--60613093 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
60613040 GGGTGAGAAG
*
60613050 TAAAAGTTTATGGGAAAA
1 TAAAAGTTT-TGGG-GAA
60613068 TAAAAAGTTTTGGGGAA
1 T-AAAAGTTTTGGGGAA
60613085 TAAAAGTTT
1 TAAAAGTTT
60613094 GAGGGAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 3 0.12
18 5 0.21
19 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (16 bp):
TAAAAGTTTTGGGGAA
Found at i:60616305 original size:25 final size:25
Alignment explanation
Indices: 60616269--60616341 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
60616259 CCTCTACTGC
* *
60616269 TTCTTTGATCCTCTGCTGGTGTTGG
1 TTCTTTGTTCCTCTGCTGGTGCTGG
60616294 TTCTTTGTTCCTCTGCTGGTGCTGG
1 TTCTTTGTTCCTCTGCTGGTGCTGG
60616319 TTCTTTGTTCCTCTGCTGGTGCT
1 TTCTTTGTTCCTCTGCTGGTGCT
60616342 TTGTTCCTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.01, C:0.23, G:0.26, T:0.49
Consensus pattern (25 bp):
TTCTTTGTTCCTCTGCTGGTGCTGG
Found at i:60616337 original size:19 final size:19
Alignment explanation
Indices: 60616313--60616351 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
60616303 CCTCTGCTGG
*
60616313 TGCTGGTTCTTTGTTCCTC
1 TGCTGGTGCTTTGTTCCTC
60616332 TGCTGGTGCTTTGTTCCTC
1 TGCTGGTGCTTTGTTCCTC
60616351 T
1 T
60616352 TCTCCACCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.23, T:0.51
Consensus pattern (19 bp):
TGCTGGTGCTTTGTTCCTC
Found at i:60617705 original size:30 final size:28
Alignment explanation
Indices: 60617671--60617759 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
60617661 GAGTTAGGTT
* **
60617671 TATGTTAAATAAATGTGTATCTAATATGTG
1 TATGTTAAACAAATG-GTAAATAA-ATGTG
*
60617701 TATGTTAAACAAATGGTAAATAAATGTT
1 TATGTTAAACAAATGGTAAATAAATGTG
* *
60617729 TATGTTAAACAAGTTGTAAATAAATGTG
1 TATGTTAAACAAATGGTAAATAAATGTG
60617757 TAT
1 TAT
60617760 AAATATTATC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
28 32 0.62
29 6 0.12
30 14 0.27
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (28 bp):
TATGTTAAACAAATGGTAAATAAATGTG
Found at i:60618275 original size:13 final size:13
Alignment explanation
Indices: 60618254--60618304 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
60618244 ACACTCAAAT
60618254 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
60618267 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
*
60618280 TTTTTC-ACAGCAC
1 -TTTTCAAAAGCAC
60618293 TTTTCAAAAGCA
1 TTTTCAAAAGCA
60618305 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 5 0.16
13 23 0.72
14 4 0.12
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:60618291 original size:26 final size:27
Alignment explanation
Indices: 60618253--60618304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
60618243 AACACTCAAA
60618253 TTTTTCAAAAGCACTTCTCAAAAGCAC
1 TTTTTCAAAAGCACTTCTCAAAAGCAC
* *
60618280 TTTTTC-ACAGCACTTTTCAAAAGCA
1 TTTTTCAAAAGCACTTCTCAAAAGCA
60618305 ATGAAGAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:60621897 original size:17 final size:17
Alignment explanation
Indices: 60621870--60621910 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
60621860 AAAGGTTTTT
60621870 TATTGATAAGTTTGTAAA
1 TATT-ATAAGTTTGTAAA
60621888 TATTATAAGTTTGTAAA
1 TATTATAAGTTTGTAAA
60621905 TATTAT
1 TATTAT
60621911 TATTGAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (17 bp):
TATTATAAGTTTGTAAA
Found at i:60623344 original size:33 final size:33
Alignment explanation
Indices: 60623307--60623416 Score: 139
Period size: 33 Copynumber: 3.3 Consensus size: 33
60623297 TACTCTATAT
*
60623307 TTGGTGTGTTGGTTGGATTAGCTCTTTTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
60623340 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
** * * * *
60623373 TTGGTGTGTTGGAGGGATTGGCTCATGTAAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
60623406 TCTGGTGTGTT
1 T-TGGTGTGTT
60623417 TTGGAGGGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
33 58 0.87
34 9 0.13
ACGTcount: A:0.14, C:0.10, G:0.35, T:0.41
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:60623425 original size:36 final size:36
Alignment explanation
Indices: 60623369--60623453 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
60623359 AGCTCTTATG
**
60623369 AGCAT-TGGTGTG--TTGGAGGGATTGGCTCATGTA
1 AGCATCTGGTGTGTTTTGGAGGGATTAACTCATGTA
* *
60623402 AGCATCTGGTGTGTTTTGGAGGGATTAACTCGTGTG
1 AGCATCTGGTGTGTTTTGGAGGGATTAACTCATGTA
*
60623438 AGCATCTAGTGTGTTT
1 AGCATCTGGTGTGTTT
60623454 GGTTGGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
33 5 0.11
34 7 0.16
36 32 0.73
ACGTcount: A:0.18, C:0.11, G:0.35, T:0.36
Consensus pattern (36 bp):
AGCATCTGGTGTGTTTTGGAGGGATTAACTCATGTA
Found at i:60624951 original size:19 final size:19
Alignment explanation
Indices: 60624927--60624963 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60624917 TGTCTCAGCC
*
60624927 GTGTGTGACACATGGCCAA
1 GTGTGTGACACACGGCCAA
60624946 GTGTGTGACACACGGCCA
1 GTGTGTGACACACGGCCA
60624964 CGCGACACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.19
Consensus pattern (19 bp):
GTGTGTGACACACGGCCAA
Found at i:60628962 original size:33 final size:33
Alignment explanation
Indices: 60628925--60629034 Score: 148
Period size: 33 Copynumber: 3.3 Consensus size: 33
60628915 TACTCTATGT
*
60628925 TTGGTGTGTTGGTTGGATTAGCTCTTTTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
60628958 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
** * * *
60628991 TTGGTGTGTTGGAGGGATTGGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
60629024 TCTGGTGTGTT
1 T-TGGTGTGTT
60629035 TTTGAGGGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
33 59 0.87
34 9 0.13
ACGTcount: A:0.12, C:0.10, G:0.37, T:0.41
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:60629052 original size:36 final size:36
Alignment explanation
Indices: 60628985--60629071 Score: 117
Period size: 36 Copynumber: 2.5 Consensus size: 36
60628975 TTAGCTCTTA
**
60628985 TGAGCAT-TGGTGTG--TTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
*
60629018 TGAGCATCTGGTGTGTTTTTGAGGGATTAACTCGTG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
*
60629054 TGAGCATCTAGTGTGTTT
1 TGAGCATCTGGTGTGTTT
60629072 GGTTGGACTA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
33 7 0.15
34 7 0.15
36 33 0.70
ACGTcount: A:0.15, C:0.10, G:0.37, T:0.38
Consensus pattern (36 bp):
TGAGCATCTGGTGTGTTTTGGAGGGATTAACTCGTG
Found at i:60630603 original size:19 final size:19
Alignment explanation
Indices: 60630567--60630604 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60630557 ATCTCATCCA
* *
60630567 TGTGTGACACATGGCCACG
1 TGTGTGACACACGACCACG
60630586 TGTGTGACACACGACCACG
1 TGTGTGACACACGACCACG
60630605 CGACACGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (19 bp):
TGTGTGACACACGACCACG
Found at i:60635984 original size:14 final size:14
Alignment explanation
Indices: 60635965--60636003 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
60635955 AATGACTAAT
60635965 AGAATACAATGTGG
1 AGAATACAATGTGG
*
60635979 AGAATA-AAAGTGG
1 AGAATACAATGTGG
60635992 AGAATACAATGT
1 AGAATACAATGT
60636004 TGAGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.49, C:0.05, G:0.26, T:0.21
Consensus pattern (14 bp):
AGAATACAATGTGG
Found at i:60638691 original size:35 final size:35
Alignment explanation
Indices: 60638641--60638710 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
60638631 CACTGTTGTC
* * *
60638641 TGATTCTAGTTTATATCAGGATACATGGATTACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
*
60638676 TGATTCTAGTATATATCAAGATACGTGGATAACCA
1 TGATTCTAGTATATATCAAGATACATGGATAACCA
60638711 ATATGACAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (35 bp):
TGATTCTAGTATATATCAAGATACATGGATAACCA
Found at i:60644099 original size:3 final size:3
Alignment explanation
Indices: 60644091--60644134 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
60644081 CCATAAAATA
60644091 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
60644135 GCTTCATTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:60647270 original size:28 final size:28
Alignment explanation
Indices: 60647239--60647296 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
60647229 TTAGTTTTAC
60647239 AAATAAATCTCCAAAATGAAGTTCTAAA
1 AAATAAATCTCCAAAATGAAGTTCTAAA
* * *
60647267 AAATATATCTTCAAAATGAAGTTTTAAA
1 AAATAAATCTCCAAAATGAAGTTCTAAA
60647295 AA
1 AA
60647297 TATTAGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.29
Consensus pattern (28 bp):
AAATAAATCTCCAAAATGAAGTTCTAAA
Found at i:60668775 original size:31 final size:32
Alignment explanation
Indices: 60668737--60668802 Score: 125
Period size: 31 Copynumber: 2.1 Consensus size: 32
60668727 TATTTACTTC
60668737 TTTAAAATTTTTAATTTATATTTAC-TTTGTA
1 TTTAAAATTTTTAATTTATATTTACTTTTGTA
60668768 TTTAAAATTTTTAATTTATATTTACTTTTGTA
1 TTTAAAATTTTTAATTTATATTTACTTTTGTA
60668800 TTT
1 TTT
60668803 TATAATTGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.74
32 9 0.26
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (32 bp):
TTTAAAATTTTTAATTTATATTTACTTTTGTA
Found at i:60669240 original size:21 final size:22
Alignment explanation
Indices: 60669196--60669241 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
60669186 TATAAAAATC
*
60669196 TTAAAAATTTTTATATTTACAT
1 TTAAAAATTTTTATATCTACAT
* *
60669218 TTAAAATTTTTTA-ATCTATAT
1 TTAAAAATTTTTATATCTACAT
60669239 TTA
1 TTA
60669242 CTTTTTACTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAAATTTTTATATCTACAT
Found at i:60669260 original size:6 final size:7
Alignment explanation
Indices: 60669238--60669262 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60669228 TTAATCTATA
60669238 TTTACTT
1 TTTACTT
60669245 TTTACTT
1 TTTACTT
60669252 TTTACTT
1 TTTACTT
60669259 TTTA
1 TTTA
60669263 AAAAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTACTT
Found at i:60675925 original size:19 final size:19
Alignment explanation
Indices: 60675901--60675937 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60675891 TCCAAACATC
*
60675901 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAAACATTTTT
60675920 AGAAAAGTAAAACATTTT
1 AGAAAAGTAAAACATTTT
60675938 CAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.32
Consensus pattern (19 bp):
AGAAAAGTAAAACATTTTT
Found at i:60676569 original size:22 final size:22
Alignment explanation
Indices: 60676543--60676584 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
60676533 CATAAAATTA
60676543 AAAAAGAA-AAACGAATCAATCT
1 AAAAAGAATAAA-GAATCAATCT
*
60676565 AAAAATAATAAAGAATCAAT
1 AAAAAGAATAAAGAATCAAT
60676585 TTATTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17
Consensus pattern (22 bp):
AAAAAGAATAAAGAATCAATCT
Found at i:60682402 original size:37 final size:39
Alignment explanation
Indices: 60682349--60682452 Score: 135
Period size: 37 Copynumber: 2.8 Consensus size: 39
60682339 GTTTGGATAA
* *
60682349 AAAACGCCGTTAAAATCGAGCATTAGCGGCGCTCACA-T
1 AAAACGCCGCTAAAATCGAGCATTAGCGGCGCTCACAGC
*
60682387 AAAACG-CGCTAAAATCGAGCATTAGCGGCGCTTACAGC
1 AAAACGCCGCTAAAATCGAGCATTAGCGGCGCTCACAGC
* *
60682425 AAAGCGCCACTAAAAT-GA-CATTAGCGGC
1 AAAACGCCGCTAAAATCGAGCATTAGCGGC
60682453 ATTTTTTTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
37 38 0.64
38 13 0.22
39 8 0.14
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (39 bp):
AAAACGCCGCTAAAATCGAGCATTAGCGGCGCTCACAGC
Found at i:60682605 original size:36 final size:37
Alignment explanation
Indices: 60682534--60682606 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
60682524 GCGTTTTTAA
*
60682534 AAAAGCGCCGCTAATGCTCAGGCTTTTAGCGGGTTTT
1 AAAAGCGCCGCTAATGCTCAGGCTTTTAGCAGGTTTT
60682571 AAAAGCGCCGCTAATGC-CAGAGC-TTTAGCAGGTTTT
1 AAAAGCGCCGCTAATGCTCAG-GCTTTTAGCAGGTTTT
60682607 GTTAAAGCGC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 15 0.44
37 19 0.56
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (37 bp):
AAAAGCGCCGCTAATGCTCAGGCTTTTAGCAGGTTTT
Found at i:60682784 original size:30 final size:30
Alignment explanation
Indices: 60682749--60682814 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
60682739 GAAATAATTT
60682749 AAAATA-AAAAACATAGAA-AATATT-TGTTAA
1 AAAATAGAAAAA-ATA-AATAATATTAT-TTAA
*
60682779 AAAATAGAAAAAATAAATACTATTATTTAA
1 AAAATAGAAAAAATAAATAATATTATTTAA
60682809 AAAATA
1 AAAATA
60682815 TTTTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 2 0.06
30 24 0.75
31 6 0.19
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (30 bp):
AAAATAGAAAAAATAAATAATATTATTTAA
Found at i:60683038 original size:14 final size:15
Alignment explanation
Indices: 60683010--60683041 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
60683000 AGGTTTTATA
60683010 GATTATGGAATTAGG
1 GATTATGGAATTAGG
60683025 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
60683039 GAT
1 GAT
60683042 GTGGTTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:60686978 original size:43 final size:43
Alignment explanation
Indices: 60686931--60687065 Score: 173
Period size: 43 Copynumber: 3.1 Consensus size: 43
60686921 ACCTATAGTA
* * *
60686931 GCGTTTGTGGTAGAAGCGCCGCTAAAGGTCCTGATCTTTAGCG
1 GCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
* * *
60686974 GCGTTTGTCGTAAAAGTGCCGTTAAAGGTCATGGTCTTTAGCG
1 GCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
* * *
60687017 GCGTTAGTGAG-AAAAGCACCGCTAAAGGTCATGGTCTTTAACG
1 GCGTTTGTG-GTAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
60687060 GCGTTT
1 GCGTTT
60687066 ATTTTTGAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 77 0.99
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
GCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
Found at i:60688303 original size:16 final size:16
Alignment explanation
Indices: 60688282--60688313 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
60688272 AAACAAAGGG
60688282 TTTGAGATGCCTAAAC
1 TTTGAGATGCCTAAAC
60688298 TTTGAGATGCCTAAAC
1 TTTGAGATGCCTAAAC
60688314 AAAGGGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (16 bp):
TTTGAGATGCCTAAAC
Found at i:60688927 original size:150 final size:149
Alignment explanation
Indices: 60688665--60688934 Score: 452
Period size: 150 Copynumber: 1.8 Consensus size: 149
60688655 GGAAATTTTA
* * * *
60688665 TTTTGTGGCGTTTTTTTTTAAAAACGTCGCTATTGCTTATCTATTGCGGTGTTTTTCATAAAAAC
1 TTTTGTGGCGTTTTTTTTTAAAAACGCCGCTATTGCTTACCTATTGCGGCGTTTTTCAAAAAAAC
*
60688730 GCTGCAAAAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGCTAAAAGGACGCTATT
66 GCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGCTAAAAGGACGCTATT
60688795 TTTTTAAAGTAAAATGATT
131 TTTTTAAAGTAAAATGATT
*
60688814 TTTTGTGGC-TTTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTTTCACAAAAA
1 TTTTGTGGCGTTTTTTTT-TAAAAACGCCGCTATTGCTTACCTATTGCGGCGTTTTTCA-AAAAA
*
60688878 ACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATGCTAAAA
64 ACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGCTAAAA
60688935 ATATTTTATT
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
148 8 0.07
149 45 0.40
150 59 0.53
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (149 bp):
TTTTGTGGCGTTTTTTTTTAAAAACGCCGCTATTGCTTACCTATTGCGGCGTTTTTCAAAAAAAC
GCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTATTTTGCTATGCTAAAAGGACGCTATT
TTTTTAAAGTAAAATGATT
Found at i:60689225 original size:32 final size:32
Alignment explanation
Indices: 60689165--60689226 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
60689155 AATTAATCTA
* *
60689165 AATCTTAAACCCTAACTCGACCCTGAATCCCT
1 AATCTTAAACCATAACCCGACCCTGAATCCCT
60689197 AATCTTTAAACCATAACCCGACCC-GAATCC
1 AATC-TTAAACCATAACCCGACCCTGAATCC
60689227 TTAACCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.34, C:0.37, G:0.06, T:0.23
Consensus pattern (32 bp):
AATCTTAAACCATAACCCGACCCTGAATCCCT
Done.