Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 190 of 222
Found at i:60689239 original size:32 final size:33
Alignment explanation
Indices: 60689170--60689239 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
60689160 ATCTAAATCT
* * * **
60689170 TAAACCCTAACTCGACCCTGAATCCCTAATCTT
1 TAAACCATAACCCGACCCTGAATCCCTAACCCC
*
60689203 TAAACCATAACCCGACCC-GAATCCTTAACCCC
1 TAAACCATAACCCGACCCTGAATCCCTAACCCC
60689235 TAAAC
1 TAAAC
60689240 ATTATTTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.34, C:0.39, G:0.06, T:0.21
Consensus pattern (33 bp):
TAAACCATAACCCGACCCTGAATCCCTAACCCC
Found at i:60689402 original size:14 final size:15
Alignment explanation
Indices: 60689385--60689416 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
60689375 CTTAAATCAG
60689385 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
60689399 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
60689414 AAT
1 AAT
60689417 TTATAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:60690621 original size:41 final size:41
Alignment explanation
Indices: 60690507--60690746 Score: 304
Period size: 41 Copynumber: 5.9 Consensus size: 41
60690497 TTTTATTATT
* *
60690507 ATTAGCGGCTCTTTTTC-AAAACGCCGCTAAAGGCCTGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
60690547 ATTAGCGGTGCCTTTTC-AAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
60690587 ATTAGCGGCGCATTTCCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
60690628 ATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGGCCTGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* ** * **
60690669 ATTGGCATCTCTTTTTCAAAAATACCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* ** *
60690710 ATTAGAGGTACTTTTTCAAAAACGCCGCTAAATGCCC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC
60690747 CAAAAACTCA
Statistics
Matches: 172, Mismatches: 27, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
40 50 0.29
41 122 0.71
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:60690852 original size:39 final size:39
Alignment explanation
Indices: 60690794--60690875 Score: 112
Period size: 39 Copynumber: 2.1 Consensus size: 39
60690784 TTTGCAGCGC
60690794 TTTTCAAAAAACACCGCTAATGC-TCATTTTTAGCGGCG
1 TTTTCAAAAAACACCGCTAATGCTTCATTTTTAGCGGCG
* * * *
60690832 TTTTCCAAAAAGCGCCGCTAATGCTTGATTTTTAGTGGCG
1 TTTT-CAAAAAACACCGCTAATGCTTCATTTTTAGCGGCG
60690872 TTTT
1 TTTT
60690876 TTGTCCAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 4 0.11
39 17 0.45
40 17 0.45
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (39 bp):
TTTTCAAAAAACACCGCTAATGCTTCATTTTTAGCGGCG
Found at i:60710243 original size:44 final size:44
Alignment explanation
Indices: 60710180--60710320 Score: 246
Period size: 44 Copynumber: 3.2 Consensus size: 44
60710170 ATTTAAGCCA
* *
60710180 CAAGTCATATCTCCCTGACCAGCAGTGAAATAGGTTGAAGATTG
1 CAAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
60710224 CAAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
1 CAAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
* *
60710268 CAAGTCCTATCTCCTTGACCAGCAGTGGAATAGGTTGAAGATTA
1 CAAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
60710312 CAAGTCCTA
1 CAAGTCCTA
60710321 ACCCGCAGTG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 93 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
CAAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTG
Found at i:60713957 original size:42 final size:42
Alignment explanation
Indices: 60713898--60714009 Score: 188
Period size: 42 Copynumber: 2.7 Consensus size: 42
60713888 GAAGGTTATG
*
60713898 AGAGCTAAACGAAAACCCATAAGGGTTAAACTAAAGCTCAAA
1 AGAGCTGAACGAAAACCCATAAGGGTTAAACTAAAGCTCAAA
* *
60713940 AGAGCTGAATGAAAACCCATAAGGGTTAAACTGAAGCTCAAA
1 AGAGCTGAACGAAAACCCATAAGGGTTAAACTAAAGCTCAAA
*
60713982 AGAGCTGAACGAAAACCCATAAAGGTTA
1 AGAGCTGAACGAAAACCCATAAGGGTTA
60714010 CCTGAAACTC
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (42 bp):
AGAGCTGAACGAAAACCCATAAGGGTTAAACTAAAGCTCAAA
Found at i:60716057 original size:41 final size:41
Alignment explanation
Indices: 60716000--60716108 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
60715990 GACTATACGT
* * *
60716000 CTAGCAGGCTAAGTGCCGGTGATTTGAATTAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
*
60716041 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
*
60716082 CTAGCAGGCCAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
60716109 TTAAATTAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
41 57 0.92
42 5 0.08
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:60718931 original size:11 final size:11
Alignment explanation
Indices: 60718915--60718971 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
60718905 TTATATACTA
60718915 AATAAAATAAT
1 AATAAAATAAT
60718926 AATAAAAT-AT
1 AATAAAATAAT
60718936 AATTAAAAATAA-
1 AA-T-AAAATAAT
*
60718948 AATCAAAATATT
1 AAT-AAAATAAT
*
60718960 AATAAACTAAT
1 AATAAAATAAT
60718971 A
1 A
60718972 TTTATTTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 4 0.11
11 23 0.61
12 10 0.26
13 1 0.03
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:60720819 original size:21 final size:20
Alignment explanation
Indices: 60720749--60720819 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 20
60720739 AGTTAAATAA
* *
60720749 TAAAGAATCAATTCAAACAG
1 TAAAGAATCGATTCAAAAAG
* * *
60720769 TAATGAATCGATTTAAAACAA
1 TAAAGAATCGATTCAAAA-AG
* *
60720790 CAAACAATCGATTCAAAGAAG
1 TAAAGAATCGATTCAAA-AAG
60720811 TAAAGAATC
1 TAAAGAATC
60720820 AATTTAAGAC
Statistics
Matches: 37, Mismatches: 12, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
20 14 0.38
21 22 0.59
22 1 0.03
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.21
Consensus pattern (20 bp):
TAAAGAATCGATTCAAAAAG
Found at i:60720819 original size:42 final size:43
Alignment explanation
Indices: 60720753--60720967 Score: 222
Period size: 42 Copynumber: 5.0 Consensus size: 43
60720743 AAATAATAAA
* * *
60720753 GAATCAATTCAAA-CAGTAATGAATCGATTTAAAACAACAAA-
1 GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAACAAAT
* * *
60720794 CAATCGATTCAAAGAAGTAAAGAATCAATTTAAGACAACAATTAT
1 GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAACAA--AT
* * * *
60720839 GAATCAATT-AAAGAAGCAAATAACCGATTTAAAACAACAATAAT
1 GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAAC-A-AAT
* * * *
60720883 GAATTGATTCAAATAAGTAAAGAATCAATTTTAAACAACAAAT
1 GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAACAAAT
* *
60720926 -AATCGATTCAAAGAAGAAAAAAATCGATTTAAAACAACAAAT
1 GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAACAAAT
60720968 TTAGTAACAA
Statistics
Matches: 140, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
41 11 0.08
42 59 0.42
43 3 0.02
44 35 0.25
45 31 0.22
46 1 0.01
ACGTcount: A:0.55, C:0.13, G:0.10, T:0.23
Consensus pattern (43 bp):
GAATCGATTCAAAGAAGTAAAGAATCGATTTAAAACAACAAAT
Found at i:60720908 original size:89 final size:85
Alignment explanation
Indices: 60720777--60720966 Score: 242
Period size: 89 Copynumber: 2.2 Consensus size: 85
60720767 AGTAATGAAT
60720777 CGATTTAAAACAAC-AAACAATCGATTCAAAGAAGTAAAGAATCAA-TTTAAGACAACAATTATG
1 CGATTTAAAACAACAAAACAATCGATTCAAAGAAGTAAAGAATCAATTTTAA-ACAACAA--AT-
* *
60720840 AATCAATT-AAAGAAGCAAATAAC
62 AATCAATTCAAAGAAGAAAAAAAC
* * *
60720863 CGATTTAAAACAACAATAATGAATTGATTCAAATAAGTAAAGAATCAATTTTAAACAACAAATAA
1 CGATTTAAAACAACAA-AA-CAATCGATTCAAAGAAGTAAAGAATCAATTTTAAACAACAAATAA
* *
60720928 TCGATTCAAAGAAGAAAAAAAT
64 TCAATTCAAAGAAGAAAAAAAC
60720950 CGATTTAAAACAACAAA
1 CGATTTAAAACAACAAA
60720967 TTTAGTAACA
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
86 22 0.24
87 31 0.34
88 2 0.02
89 32 0.35
90 5 0.05
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.22
Consensus pattern (85 bp):
CGATTTAAAACAACAAAACAATCGATTCAAAGAAGTAAAGAATCAATTTTAAACAACAAATAATC
AATTCAAAGAAGAAAAAAAC
Found at i:60722380 original size:21 final size:21
Alignment explanation
Indices: 60722350--60722389 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
60722340 TTTTTTTAAA
60722350 ATTTT-AAAAATTCAAAAAATT
1 ATTTTAAAAAATT-AAAAAATT
*
60722371 ATTTTTAAAAATTAAAAAA
1 ATTTTAAAAAATTAAAAAA
60722390 CTTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTTAAAAAATTAAAAAATT
Found at i:60722629 original size:9 final size:9
Alignment explanation
Indices: 60722612--60722648 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
60722602 TGAGTTTTCG
60722612 AATTCGAAT
1 AATTCGAAT
*
60722621 AACTCGAAT
1 AATTCGAAT
*
60722630 AATTCGAGT
1 AATTCGAAT
60722639 AATTCGAAT
1 AATTCGAAT
60722648 A
1 A
60722649 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:60722894 original size:29 final size:31
Alignment explanation
Indices: 60722862--60722920 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
60722852 AAACCTTTTA
60722862 TTTTCCCCCAAAA-TTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
60722891 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
60722921 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 12 0.46
30 9 0.35
31 5 0.19
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:60728940 original size:19 final size:18
Alignment explanation
Indices: 60728907--60728944 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
60728897 GCAAACATAT
60728907 AATATATTTTATAATTAAA
1 AATATATTTTATAA-TAAA
60728926 AATAT-TTTTATTAATAAA
1 AATATATTTTA-TAATAAA
60728944 A
1 A
60728945 CTGGCTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATATATTTTATAATAAA
Found at i:60740346 original size:38 final size:39
Alignment explanation
Indices: 60740214--60740347 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 39
60740204 TTTGGATAAA
* * ** * *
60740214 AAAATGCCGCTAAAAATCAAGCATTAGCACCGCTTTTCA
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTCG
*
60740253 AAAACCGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTT-G
1 AAAA-CGCCGCTAAAAATCGAGCATTAGCGGCG-TTTTTCG
* *
60740293 GAAATGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTCG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTCG
*
60740331 AAAAGCGCCGCAAAAAA
1 AAAA-CGCCGCTAAAAA
60740348 CCTAAGCCCA
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
37 5 0.06
38 18 0.23
39 25 0.32
40 26 0.33
41 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTTCG
Found at i:60740492 original size:13 final size:14
Alignment explanation
Indices: 60740469--60740498 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
60740459 TTAATTATCA
60740469 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
60740483 TTAT-GTTTAGGGT
1 TTATAGTTTAGGGT
60740496 TTA
1 TTA
60740499 AGATTTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:60740541 original size:15 final size:14
Alignment explanation
Indices: 60740522--60740556 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
60740512 ACTATTTTAA
60740522 GGTTTAGAGATTAT
1 GGTTTAGAGATTAT
*
60740536 GTGTTTAGGGATTAT
1 G-GTTTAGAGATTAT
60740551 GGTTTA
1 GGTTTA
60740557 TGGTTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGAGATTAT
Found at i:60741429 original size:7 final size:7
Alignment explanation
Indices: 60741341--60741483 Score: 83
Period size: 7 Copynumber: 20.1 Consensus size: 7
60741331 AACTAATAAT
60741341 GGGTTTA
1 GGGTTTA
*
60741348 GGGATTA
1 GGGTTTA
*
60741355 CGGTTTA
1 GGGTTTA
*
60741362 TGGTTTA
1 GGGTTTA
*
60741369 TGGTTTAA
1 GGGTTT-A
*
60741377 GGG-TTG
1 GGGTTTA
60741383 GGGTTTA
1 GGGTTTA
*
60741390 AGGTTTA
1 GGGTTTA
*
60741397 GGGGTTA
1 GGGTTTA
*
60741404 GGGGTTA
1 GGGTTTA
* *
60741411 GGGGCTAA
1 -GGGTTTA
60741419 GGGTTTA
1 GGGTTTA
60741426 GGGTTTA
1 GGGTTTA
* * *
60741433 TGTTTTT
1 GGGTTTA
* *
60741440 TGATTTA
1 GGGTTTA
60741447 GGGTTTAA
1 GGGTTT-A
**
60741455 GGG-ACA
1 GGGTTTA
60741461 GGGTTTA
1 GGGTTTA
60741468 GGGGTTTA
1 -GGGTTTA
60741476 GGGTTTA
1 GGGTTTA
60741483 G
1 G
60741484 ATTAATTAGT
Statistics
Matches: 105, Mismatches: 25, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
6 7 0.07
7 79 0.75
8 19 0.18
ACGTcount: A:0.17, C:0.02, G:0.41, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:60748180 original size:43 final size:43
Alignment explanation
Indices: 60748120--60748210 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
60748110 CTTTGAGTTC
* * *
60748120 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
60748162 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATTTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
60748205 ATTACC
1 ATTACC
60748211 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:60748642 original size:42 final size:43
Alignment explanation
Indices: 60748559--60748676 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 43
60748549 ATGTTTTTTT
* * * * *
60748559 TAAATGTTATGTTTT-TAGCGGCGTTTTTG-CGAGAAGCGTCGC
1 TAAAAGTTATGTTTTACAGCGGCGTTTGTGAC-AAAAGTGTCGC
* * *
60748601 TAAAGGTT-TGTTTTATAGCGGTGTTTGTGACAAAAGTGTCGC
1 TAAAAGTTATGTTTTACAGCGGCGTTTGTGACAAAAGTGTCGC
*
60748643 TAAAAGTTATGTTTTGCAGCGGCGTTTGTGACAA
1 TAAAAGTTATGTTTTACAGCGGCGTTTGTGACAA
60748677 GCCCCGCTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 6 0.09
42 35 0.55
43 23 0.36
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (43 bp):
TAAAAGTTATGTTTTACAGCGGCGTTTGTGACAAAAGTGTCGC
Found at i:60748664 original size:43 final size:42
Alignment explanation
Indices: 60748596--60748676 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
60748586 TGCGAGAAGC
* * *
60748596 GTCGCTAAAGGTTTGTTTTATAGCGGTGTTTGTGACAAAAGT
1 GTCGCTAAAAGTTTGTTTTACAGCGGCGTTTGTGACAAAAGT
*
60748638 GTCGCTAAAAGTTATGTTTTGCAGCGGCGTTTGTGACAA
1 GTCGCTAAAAGTT-TGTTTTACAGCGGCGTTTGTGACAA
60748677 GCCCCGCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 12 0.35
43 22 0.65
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.36
Consensus pattern (42 bp):
GTCGCTAAAAGTTTGTTTTACAGCGGCGTTTGTGACAAAAGT
Found at i:60752417 original size:16 final size:16
Alignment explanation
Indices: 60752393--60752426 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60752383 GAGTCTGTCA
60752393 AACCCTAGAGTTCGCC
1 AACCCTAGAGTTCGCC
* *
60752409 AACCTTAGAGTTCTCC
1 AACCCTAGAGTTCGCC
60752425 AA
1 AA
60752427 ATGATGAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (16 bp):
AACCCTAGAGTTCGCC
Found at i:60755270 original size:12 final size:12
Alignment explanation
Indices: 60755248--60755278 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
60755238 TTTTATTTTC
60755248 TTAGTTTAATTAT
1 TTAG-TTAATTAT
60755261 TTAGTTAATTAT
1 TTAGTTAATTAT
60755273 TTAGTT
1 TTAGTT
60755279 TTTATAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (12 bp):
TTAGTTAATTAT
Found at i:60757782 original size:27 final size:25
Alignment explanation
Indices: 60757733--60757803 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 25
60757723 GGTCCCAATG
* *
60757733 GGAAGGTACTATGGAAGGGTATCGT
1 GGAAGGTACTATGGGAGGATATCGT
*
60757758 TGAAGGATACTCATGGGAGGATATCGT
1 GGAAGG-TACT-ATGGGAGGATATCGT
60757785 GGAAGGGTACTTATGGGAG
1 GGAA-GGTAC-TATGGGAG
60757804 AGTACCATGG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 5 0.13
26 4 0.11
27 26 0.68
28 3 0.08
ACGTcount: A:0.28, C:0.08, G:0.39, T:0.24
Consensus pattern (25 bp):
GGAAGGTACTATGGGAGGATATCGT
Found at i:60758156 original size:36 final size:36
Alignment explanation
Indices: 60758109--60758189 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
60758099 AAATATCCTA
**
60758109 CTCCCACACATGGGTGAAAGCTTAC-AGGGGGTCTTG
1 CTCCCACACATGGAAGAAAGCTTACGA-GGGGTCTTG
* * *
60758145 CTCCCATACATGGAAGGAGGCTTACGAGGGGTCTTG
1 CTCCCACACATGGAAGAAAGCTTACGAGGGGTCTTG
*
60758181 CTCCTACAC
1 CTCCCACAC
60758190 TTGGGGAAGG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
36 36 0.97
37 1 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (36 bp):
CTCCCACACATGGAAGAAAGCTTACGAGGGGTCTTG
Found at i:60763701 original size:11 final size:12
Alignment explanation
Indices: 60763675--60763706 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
60763665 AACATTTAGC
60763675 TTTTAGTTATAA
1 TTTTAGTTATAA
60763687 TTTTAGTTA-AA
1 TTTTAGTTATAA
60763698 TTTTA-TTAT
1 TTTTAGTTAT
60763707 TAGTCCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 7 0.37
12 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (12 bp):
TTTTAGTTATAA
Found at i:60763869 original size:14 final size:14
Alignment explanation
Indices: 60763850--60763876 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
60763840 AAATATTATA
60763850 GTTAAATTCATTTG
1 GTTAAATTCATTTG
60763864 GTTAAATTCATTT
1 GTTAAATTCATTT
60763877 ACTAGTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (14 bp):
GTTAAATTCATTTG
Found at i:60770967 original size:68 final size:68
Alignment explanation
Indices: 60770887--60771017 Score: 226
Period size: 68 Copynumber: 1.9 Consensus size: 68
60770877 TATCAAGGTA
* *
60770887 AAATCTGCTAACTGAATGTCTTCCTCTTTTCGTAGGTGGGAATTATCTTTATTTACGATTTTGAG
1 AAATCTGATAACTGAATGTCTTCCTCTTTTCGTAGGTGAGAATTATCTTTATTTACGATTTTGAG
60770952 GGT
66 GGT
* *
60770955 AAATCTGATAACTGAATGTCTTCCTCTTTTCGTTGGTGAGAATTGTCTTTATTTACGATTTTG
1 AAATCTGATAACTGAATGTCTTCCTCTTTTCGTAGGTGAGAATTATCTTTATTTACGATTTTG
60771018 TGAACTGGCG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (68 bp):
AAATCTGATAACTGAATGTCTTCCTCTTTTCGTAGGTGAGAATTATCTTTATTTACGATTTTGAG
GGT
Found at i:60771941 original size:29 final size:32
Alignment explanation
Indices: 60771895--60771970 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 32
60771885 AAATTATAGA
* * *
60771895 TATTTCATATAAGCAAATCTATTAATTATAAT-T
1 TATTTCA-ATAA-AAAATATATTAATTAAAATAT
*
60771928 TA-TT-AATAAAAAATATTTTAATTAAAATAT
1 TATTTCAATAAAAAATATATTAATTAAAATAT
60771958 TATTTCAATAAAA
1 TATTTCAATAAAA
60771971 TGTTTAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
29 15 0.42
30 7 0.19
31 3 0.08
32 9 0.25
33 2 0.06
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (32 bp):
TATTTCAATAAAAAATATATTAATTAAAATAT
Found at i:60777704 original size:42 final size:42
Alignment explanation
Indices: 60777591--60777719 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 42
60777581 TCATATAAGT
* * *
60777591 TTTC-GTTCAGCTC-TATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTTA-AGAGCTTTTGTTCAACCCTTATGGG
** * *
60777632 TTTCCATTCAGCTCTTAAGAGCTCTCGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTAAGAGCTTTTGTTCAACCCTTATGGG
* *
60777674 TTTCTGTTTAGCTTTTATA-AGCTTTTGTTC-ACCCTTA-GGG
1 TTTCTGTTCAGCTCTTA-AGAGCTTTTGTTCAACCCTTATGGG
60777714 TTTCTG
1 TTTCTG
60777720 ATAATGATGT
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
40 9 0.12
41 11 0.15
42 50 0.68
43 3 0.04
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTAAGAGCTTTTGTTCAACCCTTATGGG
Found at i:60783755 original size:25 final size:25
Alignment explanation
Indices: 60783719--60783830 Score: 188
Period size: 25 Copynumber: 4.5 Consensus size: 25
60783709 CCCACAACTT
*
60783719 GTGAGAGTATACCGATTTACAGCTC
1 GTGAGAGCATACCGATTTACAGCTC
60783744 GTGAGAGCATACCGATTTACAGCTC
1 GTGAGAGCATACCGATTTACAGCTC
60783769 GTGAGAGCATACCGATTTACAGCTC
1 GTGAGAGCATACCGATTTACAGCTC
*
60783794 GTGAGAGCATACCAATTTACAGCTC
1 GTGAGAGCATACCGATTTACAGCTC
* *
60783819 ATGTGAGCATAC
1 GTGAGAGCATAC
60783831 ATGTGCAGGA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 83 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
GTGAGAGCATACCGATTTACAGCTC
Found at i:60784447 original size:26 final size:25
Alignment explanation
Indices: 60784392--60784447 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
60784382 CGATTGTTGG
* *
60784392 CCATGTGTTTTGGTTGTTGAAATGG
1 CCATTTGTTTTGGTTGTTGAAATGA
*
60784417 CCATTTGTTTTGGCTTG-TGATATGA
1 CCATTTGTTTTGG-TTGTTGAAATGA
60784442 CACATT
1 C-CATT
60784448 AATGATGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.18, C:0.12, G:0.25, T:0.45
Consensus pattern (25 bp):
CCATTTGTTTTGGTTGTTGAAATGA
Found at i:60786374 original size:22 final size:22
Alignment explanation
Indices: 60786340--60786443 Score: 93
Period size: 22 Copynumber: 4.7 Consensus size: 22
60786330 ATGCAATTTT
* *
60786340 CACTATGGTGCCTACTGATTCG
1 CACTACGGTGCCTACTAATTCG
* *
60786362 CAGTACGGTGCCTACTAATTTG
1 CACTACGGTGCCTACTAATTCG
* *
60786384 CTCTACAGTGCCTACTAATTCG
1 CACTACGGTGCCTACTAATTCG
* * ***
60786406 CACTTCGATGCCTA-TCGCTCAG
1 CACTACGGTGCCTACTAATTC-G
60786428 CACTACGGTGCCTACT
1 CACTACGGTGCCTACT
60786444 GGTGTGGTGT
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
21 3 0.05
22 59 0.94
23 1 0.02
ACGTcount: A:0.20, C:0.31, G:0.19, T:0.30
Consensus pattern (22 bp):
CACTACGGTGCCTACTAATTCG
Found at i:60788637 original size:9 final size:9
Alignment explanation
Indices: 60788623--60788736 Score: 167
Period size: 9 Copynumber: 12.7 Consensus size: 9
60788613 TTTGGTTAAA
60788623 AATTAACCG
1 AATTAACCG
*
60788632 AATTAACCA
1 AATTAACCG
60788641 AATTAACCG
1 AATTAACCG
*
60788650 AATTACCCG
1 AATTAACCG
60788659 AATTAACCG
1 AATTAACCG
60788668 AATT-ACTCG
1 AATTAAC-CG
60788677 AATTAACCG
1 AATTAACCG
60788686 AATTAACCG
1 AATTAACCG
*
60788695 AATTACCCG
1 AATTAACCG
*
60788704 AATTACCCG
1 AATTAACCG
60788713 AATTAACCG
1 AATTAACCG
*
60788722 AATTAACCT
1 AATTAACCG
60788731 AATTAA
1 AATTAA
60788737 ATCATACATA
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
8 2 0.02
9 92 0.96
10 2 0.02
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:60790421 original size:68 final size:68
Alignment explanation
Indices: 60790305--60790625 Score: 329
Period size: 68 Copynumber: 4.7 Consensus size: 68
60790295 TAGGTGCACA
* * * *
60790305 ACACCATACCGTGTAAGACCATAGCTGGGCTATGGCAACATATAAAGTCTGCGAGGACAATAAAC
1 ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCTGCGAAGACAGTAAAC
60790370 ATG
66 ATG
** * * * **
60790373 GTACCATATCATGTAAAACCATAGCTGGGTTATGGCAACATATGAAGTCCACCG-AGACAGTAAA
1 ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGT-CTGCGAAGACAGTAAA
60790437 CATG
65 CATG
* * * * * * * ** * *
60790441 ATACTATATCCTGTAAGACTATAGCTGGGATATGGCAACATATGAAGCCCGTTAAGATAGTTAAC
1 ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCTGCGAAGACAGTAAAC
60790506 ATG
66 ATG
* * * * * * * *
60790509 ACACCATATCGTGTAAGACCATAGTTGGGCTATAGAAATATATGAATTTTGCCAAGATAGTAAAC
1 ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCTGCGAAGACAGTAAAC
60790574 ATG
66 ATG
* * *
60790577 GCACTATATCGTGTAAGACCATAGCTGGGCTATGACAACATATGAAGTC
1 ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTC
60790626 CACTAGGACA
Statistics
Matches: 202, Mismatches: 49, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
67 1 0.00
68 198 0.98
69 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (68 bp):
ACACCATATCGTGTAAGACCATAGCTGGGCTATGGCAACATATGAAGTCTGCGAAGACAGTAAAC
ATG
Found at i:60793371 original size:2 final size:2
Alignment explanation
Indices: 60793360--60793389 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
60793350 ATCATGCATG
60793360 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60793390 CACTCAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60794765 original size:12 final size:12
Alignment explanation
Indices: 60794748--60794800 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
60794738 ATATCAAATC
60794748 TAAAGTATGATT
1 TAAAGTATGATT
* *
60794760 TAAAGTATAATAAA
1 TAAAGTATGAT--T
*
60794774 TAAAATATGATT
1 TAAAGTATGATT
60794786 TAAAGTATGATT
1 TAAAGTATGATT
60794798 TAA
1 TAA
60794801 TGTTAAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 24 0.73
14 9 0.27
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (12 bp):
TAAAGTATGATT
Found at i:60795301 original size:30 final size:29
Alignment explanation
Indices: 60795267--60795323 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
60795257 TTAGTAGATC
60795267 AAATAAACTATACTAATAAATACTAAATAT
1 AAATAAACTATACTAA-AAATACTAAATAT
* * *
60795297 AAATATATTATACTCAAAATACTAAAT
1 AAATAAACTATACTAAAAATACTAAAT
60795324 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATAAACTATACTAAAAATACTAAATAT
Found at i:60797078 original size:24 final size:24
Alignment explanation
Indices: 60797045--60797096 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
60797035 TTAGTAGGTC
* *
60797045 AAATAAATTATACTACTAAATGCT
1 AAATAAATTATACTAATAAATACT
*
60797069 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
60797093 AAAT
1 AAAT
60797097 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:60797209 original size:17 final size:18
Alignment explanation
Indices: 60797173--60797215 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
60797163 CAACTCTAAC
60797173 ATTAAAAAAAGTACACAA
1 ATTAAAAAAAGTACACAA
*
60797191 ATATAAAAAAAGT-TA-AA
1 AT-TAAAAAAAGTACACAA
60797208 ATTAAAAA
1 ATTAAAAA
60797216 CTAAATTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 6 0.26
17 4 0.17
18 3 0.13
19 10 0.43
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (18 bp):
ATTAAAAAAAGTACACAA
Found at i:60797925 original size:101 final size:102
Alignment explanation
Indices: 60797739--60797948 Score: 359
Period size: 101 Copynumber: 2.1 Consensus size: 102
60797729 TGATTTTTAA
*
60797739 AATTAAAACCAAAATTTAAAATAAATAGTAATATAGATAATATATAAATAAATCAAGTATTTAAG
1 AATTAAAACCAAAATTTAAAATAAATAGTAATATAGAAAATATATAAATAAA-CAAGTATTTAAG
* **
60797804 TTAAAAAATAGATAAATCATCTAAATTAAATTTTATTT
65 TTAAAAAATAGATAAATCATCGAAACAAAATTTTATTT
*
60797842 AATTAAAACCAAAATTTAAAATAAATAGTAATATAGAAAATATATAAATAAA-AATTATTTAAGT
1 AATTAAAACCAAAATTTAAAATAAATAGTAATATAGAAAATATATAAATAAACAAGTATTTAAGT
60797906 TAAAAAATAGATAAATCATCGAAACAAAATTTTATTT
66 TAAAAAATAGATAAATCATCGAAACAAAATTTTATTT
60797943 AATTAA
1 AATTAA
60797949 TTAAATGTTT
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
101 51 0.50
103 51 0.50
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (102 bp):
AATTAAAACCAAAATTTAAAATAAATAGTAATATAGAAAATATATAAATAAACAAGTATTTAAGT
TAAAAAATAGATAAATCATCGAAACAAAATTTTATTT
Found at i:60800147 original size:3 final size:3
Alignment explanation
Indices: 60800141--60800165 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
60800131 AGGAGGAGGT
60800141 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
60800166 TGGTGAGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60802078 original size:19 final size:19
Alignment explanation
Indices: 60802027--60802111 Score: 73
Period size: 20 Copynumber: 4.2 Consensus size: 19
60802017 AAAATTACAA
* *
60802027 AAAAATCAAAATAATTTTC
1 AAAATTCAAAATAATTTTT
*
60802046 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
60802066 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
60802084 AGAAATTCTAAAATTTATATTTTT
1 A-AAATTC-AAAA--TA-ATTTTT
60802108 AAAA
1 AAAA
60802112 AATTATAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
18 6 0.11
19 17 0.32
20 20 0.38
22 1 0.02
23 3 0.06
24 6 0.11
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:60802099 original size:18 final size:19
Alignment explanation
Indices: 60802054--60802102 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
60802044 TCAAAATTTG
*
60802054 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
60802073 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
60802092 TAAA-ATTTATA
1 AAAATATTTATA
60802103 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:60802125 original size:18 final size:18
Alignment explanation
Indices: 60802093--60802163 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 18
60802083 TAGAAATTCT
*
60802093 AAAATT-TATATTTTTAA
1 AAAATTATAAATTTTTAA
60802110 AAAATTATAAATTTTTAAA
1 AAAATTATAAATTTTT-AA
*
60802129 AAAATATATAAAAATTTTAA
1 AAAAT-TAT-AAATTTTTAA
*
60802149 TAAAATAAT-AATTTT
1 -AAAATTATAAATTTT
60802164 GAAATCTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
17 6 0.13
18 13 0.29
19 7 0.16
20 7 0.16
21 12 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTATAAATTTTTAA
Found at i:60802138 original size:20 final size:20
Alignment explanation
Indices: 60802102--60802163 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 20
60802092 TAAAATTTAT
60802102 ATTTTT-AAAAAAT-TATAA
1 ATTTTTAAAAAAATATATAA
60802120 ATTTTTAAAAAAATATATAAA
1 ATTTTTAAAAAAATATAT-AA
* *
60802141 AATTTTAATAAAATA-AT-A
1 ATTTTTAAAAAAATATATAA
60802159 ATTTT
1 ATTTT
60802164 GAAATCTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 11 0.29
19 7 0.18
20 5 0.13
21 15 0.39
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTTTAAAAAAATATATAA
Found at i:60802478 original size:21 final size:21
Alignment explanation
Indices: 60802454--60802494 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60802444 ACCTTTTCTA
60802454 AAGTTAAAA-GTCAAAACTATC
1 AAGTTAAAAGGT-AAAACTATC
60802475 AAGTTAAAAGGTAAAACTAT
1 AAGTTAAAAGGTAAAACTAT
60802495 GTTGTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATC
Found at i:60816034 original size:31 final size:31
Alignment explanation
Indices: 60815961--60816035 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
60815951 AACTTTAAGG
60815961 AAAGTTTAGAAACCTTCTAATCAAATCAAAA
1 AAAGTTTAGAAACCTTCTAATCAAATCAAAA
*
60815992 AAATTTTAGAAACCTTCTAATCAAATCAAAA
1 AAAGTTTAGAAACCTTCTAATCAAATCAAAA
* *
60816023 CAAGTTGAGAAAC
1 AAAGTTTAGAAAC
60816036 ACTTTGAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.25
Consensus pattern (31 bp):
AAAGTTTAGAAACCTTCTAATCAAATCAAAA
Found at i:60819828 original size:31 final size:31
Alignment explanation
Indices: 60819793--60819855 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
60819783 TATAAGTAAC
60819793 TAGCATTTGGATGTTATTTAATAGACATTAT
1 TAGCATTTGGATGTTATTTAATAGACATTAT
60819824 TAGCATTTGGATGTTATTTAATAGACATTAT
1 TAGCATTTGGATGTTATTTAATAGACATTAT
60819855 T
1 T
60819856 TAAGTGTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.46
Consensus pattern (31 bp):
TAGCATTTGGATGTTATTTAATAGACATTAT
Found at i:60828232 original size:13 final size:12
Alignment explanation
Indices: 60828213--60828255 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
60828203 TATATAACAA
60828213 TTATTTTTATAT
1 TTATTTTTATAT
*
60828225 TATATTTTTATTTT
1 T-TATTTTTA-TAT
60828239 TTATTTTT-TAT
1 TTATTTTTATAT
60828250 TTATTT
1 TTATTT
60828256 AGAATTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 8 0.30
12 1 0.04
13 15 0.56
14 3 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTATTTTTATAT
Found at i:60828242 original size:15 final size:15
Alignment explanation
Indices: 60828218--60828256 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 15
60828208 AACAATTATT
60828218 TTTATATTATATTTTTA
1 TTTAT-TTAT-TTTTTA
60828235 TTT-TTTATTTTTTA
1 TTTATTTATTTTTTA
60828249 TTTATTTA
1 TTTATTTA
60828257 GAATTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 9 0.43
15 8 0.38
16 1 0.05
17 3 0.14
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTTATTTTTTA
Found at i:60828687 original size:13 final size:13
Alignment explanation
Indices: 60828665--60828694 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
60828655 CAATATTTAC
60828665 ATTTTCTTGTTAA
1 ATTTTCTTGTTAA
*
60828678 ATTTTTTTGTTAA
1 ATTTTCTTGTTAA
60828691 ATTT
1 ATTT
60828695 AACTATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (13 bp):
ATTTTCTTGTTAA
Found at i:60829300 original size:18 final size:18
Alignment explanation
Indices: 60829277--60829312 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
60829267 CGTGTCAGTG
60829277 TGAGTGTAAATAGTAACT
1 TGAGTGTAAATAGTAACT
*
60829295 TGAGTGTGAATAGTAACT
1 TGAGTGTAAATAGTAACT
60829313 ATCTAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (18 bp):
TGAGTGTAAATAGTAACT
Found at i:60833053 original size:272 final size:271
Alignment explanation
Indices: 60832528--60833061 Score: 870
Period size: 272 Copynumber: 2.0 Consensus size: 271
60832518 TACACTTTTT
* * * * * *
60832528 CTTGTAAATATTTGATATTGTTTCCTTTTTGTCATGTGATTCATTAATGAATCATATTAATGTGT
1 CTTGTAAATATTTGATATTGTTTCATTTTGGCCATATGATTCATTAATGAATCACATTAATATGT
* * *
60832593 ATTTTGTAAAGTCTTTAGGTTACCTAATATATATGTTTCATGTTGAATTTGTTAATAATTAGGAT
66 ATTTTATAAAGTATTTAGGTTACCTAATATATATGCTTCATGTTGAATTTGTTAATAATTAGGAT
* * * *
60832658 GTTTTAGACCTCATTGAAAATGTATGTTGGATTTTACAGATTGTTTTAGTATTGTATCAACTGGA
131 GTTTCAGACCTAATTGAAAATGTATGTTGGATCTTACAGACTGTTTTAGTATTGTATCAACTGGA
60832723 TTTGGTTTGTATTGTTAACTATATATCTCTAGTAAAAGAAATTTATGATAGAGCCTACTATTACT
196 TTTGGTTTGTATTGTTAACTATATATCTCTAGTAAAAGAAATTTATGATAGAGCCTACTATTACT
60832788 ATATACTCTTG
261 ATATACTCTTG
* * *
60832799 CTTGTAAATATTTTATATTGTTTCATTTTGGCCCTATGATTCATTAATGAATCACATTACTATGT
1 CTTGTAAATATTTGATATTGTTTCATTTTGGCCATATGATTCATTAATGAATCACATTAATATGT
*
60832864 ATTTTATAAAGTATTTAGGTTACCTAATATATATGCTTCATGTTGAATTTGTTGATAATTAGGAT
66 ATTTTATAAAGTATTTAGGTTACCTAATATATATGCTTCATGTTGAATTTGTTAATAATTAGGAT
* * * *
60832929 GTTATCGGACTTAATTGAAAATGTATGTTGGATCTTATAGACTGTTTTAGTATTGTATCACCTGG
131 GTT-TCAGACCTAATTGAAAATGTATGTTGGATCTTACAGACTGTTTTAGTATTGTATCAACTGG
60832994 ATTTGGTTTGTATTGTTAACTATATATCTCTAGTAAAAGAAATTTATGATAGAGCCTACTATTAC
195 ATTTGGTTTGTATTGTTAACTATATATCTCTAGTAAAAGAAATTTATGATAGAGCCTACTATTAC
60833059 TAT
260 TAT
60833062 TGTAACACCC
Statistics
Matches: 241, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
271 120 0.50
272 121 0.50
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (271 bp):
CTTGTAAATATTTGATATTGTTTCATTTTGGCCATATGATTCATTAATGAATCACATTAATATGT
ATTTTATAAAGTATTTAGGTTACCTAATATATATGCTTCATGTTGAATTTGTTAATAATTAGGAT
GTTTCAGACCTAATTGAAAATGTATGTTGGATCTTACAGACTGTTTTAGTATTGTATCAACTGGA
TTTGGTTTGTATTGTTAACTATATATCTCTAGTAAAAGAAATTTATGATAGAGCCTACTATTACT
ATATACTCTTG
Found at i:60834415 original size:42 final size:42
Alignment explanation
Indices: 60834368--60834484 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
60834358 AGTGCTAAAC
* *
60834368 AGAAACCCATAAGGGTTGAACGGAAGCTCATA-AGAGCTGAA
1 AGAAACCCATAAGGGTTAAACAGAAGCTCATATAGAGCTGAA
*
60834409 TAGAAACCCGTAAGGGTTAAACAGAAGCTCA-ATAGAGCTGAA
1 -AGAAACCCATAAGGGTTAAACAGAAGCTCATATAGAGCTGAA
* *
60834451 AGGAAACCCATTAA-GGTTTAACAGAAACTCATAT
1 A-GAAACCCA-TAAGGGTTAAACAGAAGCTCATAT
60834485 GAGTTAAACA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.03
42 58 0.89
43 5 0.08
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (42 bp):
AGAAACCCATAAGGGTTAAACAGAAGCTCATATAGAGCTGAA
Found at i:60834434 original size:21 final size:21
Alignment explanation
Indices: 60834363--60834434 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
60834353 CACAAAGTGC
60834363 TAAACAGAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
* * * * * *
60834384 TGAACGGAAGCTCATAAGAGC
1 TAAACAGAAACCCATAAGGGT
* * *
60834405 TGAATAGAAACCCGTAAGGGT
1 TAAACAGAAACCCATAAGGGT
60834426 TAAACAGAA
1 TAAACAGAA
60834435 GCTCAATAGA
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (21 bp):
TAAACAGAAACCCATAAGGGT
Found at i:60842195 original size:27 final size:26
Alignment explanation
Indices: 60842158--60842225 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
60842148 AAAAATAAAA
* *
60842158 ATTTACCAAAATATAATCCCTTTTTTT
1 ATTTAACAAAATATAAT-ACTTTTTTT
* * *
60842185 ATTTAATAAAATATTATATTTTTTTT
1 ATTTAACAAAATATAATACTTTTTTT
*
60842211 ATTTACCAAAATATA
1 ATTTAACAAAATATA
60842226 CCAAAAAAAC
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 19 0.58
27 14 0.42
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTTAACAAAATATAATACTTTTTTT
Found at i:60842304 original size:27 final size:26
Alignment explanation
Indices: 60842266--60842323 Score: 107
Period size: 27 Copynumber: 2.2 Consensus size: 26
60842256 GCCTGATCAG
60842266 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATGCCATTGGCGGCACCAAT-GT
60842293 GCCAATGCCATTGGCGGCACCAATGT
1 GCCAATGCCATTGGCGGCACCAATGT
60842319 GCCAA
1 GCCAA
60842324 AGGACTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (26 bp):
GCCAATGCCATTGGCGGCACCAATGT
Found at i:60842846 original size:19 final size:19
Alignment explanation
Indices: 60842822--60842882 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
60842812 TCTAATTAAG
60842822 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
60842841 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
* *
60842859 TAATAACTATATTTTAAAT
1 TAATAACTCTATTTTAATT
60842878 TAATA
1 TAATA
60842883 GAAATACTAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:60842851 original size:18 final size:18
Alignment explanation
Indices: 60842830--60842882 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
60842820 AGTAATAACT
60842830 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
60842848 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
*
60842865 CTATATTTTAAATTAATA
1 C--TATTTTAATTTAATA
60842883 GAAATACTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:60843432 original size:5 final size:5
Alignment explanation
Indices: 60843422--60843451 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
60843412 GGCTGTGTCA
60843422 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT
60843452 TTTAATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
GTTTT
Found at i:60843523 original size:27 final size:27
Alignment explanation
Indices: 60843457--60843525 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
60843447 GTTTTTTTAA
***
60843457 TATATTTTGGTAAATAAAAAAATTTAT
1 TATATTTTGGTAAATAAAAAAAGGGAT
* *
60843484 AATATTTTAGTAAATAAAAAAAGGGAT
1 TATATTTTGGTAAATAAAAAAAGGGAT
*
60843511 TATACTTTGGTAAAT
1 TATATTTTGGTAAAT
60843526 TTTTATTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.48, C:0.01, G:0.12, T:0.39
Consensus pattern (27 bp):
TATATTTTGGTAAATAAAAAAAGGGAT
Found at i:60846320 original size:20 final size:21
Alignment explanation
Indices: 60846295--60846334 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60846285 TGCCATATTT
60846295 AATAATGA-AAAAAATCAAAC
1 AATAATGATAAAAAATCAAAC
*
60846315 AATAATGATAATAAATCAAA
1 AATAATGATAAAAAATCAAA
60846335 GATAAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (21 bp):
AATAATGATAAAAAATCAAAC
Found at i:60848016 original size:94 final size:94
Alignment explanation
Indices: 60847856--60848142 Score: 342
Period size: 94 Copynumber: 3.0 Consensus size: 94
60847846 GTGGCACAGT
* * **
60847856 TTCATATTGCTCTATTGCAACTTCAAGGAGATAAGATTTGCTGTTGTAGTTTCATTCCAACCCAC
1 TTCATATTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTGACCCAC
* *
60847921 TGCAACTTCAGGGATATAGGATTTGTATC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * * * * * * *
60847950 TTCATTTTGCTCTACTGCAACTTTAGGGAGGTAAGATTCGCTATGGTAGCTTCAATCTGACACAC
1 TTCATATTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTGACCCAC
* *
60848015 TGCAACTTCAGGGGCACAGGATTTGTAGC
66 TGCAACTTCAGGGGTATAGGATTTGTAGC
* * * * *
60848044 TTCATCTTGCTCCATTGCAACCTCAATGAGATAAGATTCG-TCATTGTAGTTTGTATTCTGACCC
1 TTCATATTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCT-ATTGTAGTTT-CATTCTGACCC
*
60848108 ACTGCAACTTCAGGGGTATAGGAATTGTAGC
64 ACTGCAACTTCAGGGGTATAGGATTTGTAGC
60848139 TTCA
1 TTCA
60848143 ATCAAATCAA
Statistics
Matches: 158, Mismatches: 33, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
93 1 0.01
94 117 0.74
95 40 0.25
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (94 bp):
TTCATATTGCTCTATTGCAACTTCAAGGAGATAAGATTCGCTATTGTAGTTTCATTCTGACCCAC
TGCAACTTCAGGGGTATAGGATTTGTAGC
Found at i:60848164 original size:139 final size:138
Alignment explanation
Indices: 60847995--60848282 Score: 355
Period size: 139 Copynumber: 2.1 Consensus size: 138
60847985 ATTCGCTATG
** * * *
60847995 GTAGCTTCAATCTGACACACTGCAACTTCAGGGGCACAGGATTTGTAGCTTCATCTTGCTCCATT
1 GTAGCTTCAATCAAACACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCACT
* * * * * *
60848060 GCAACCTCA-ATGAGATAAGATTCGTCATTGTAGTTTGTATTCTGACCCACTGCAACTTCAGGGG
66 GCAACCTCAGA-AAGATAAGATTCGTCATGGTAGATT-CAATCCGACCCACTGCAACTTCAGGGG
60848124 TATAGGAATT
129 TATAGGAATT
* *
60848134 GTAGCTTCAATCAAATCA-ACTACAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCAC
1 GTAGCTTCAATCAAA-CACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCAC
* * * * **
60848198 TGCAACTTTAGAAAGATAAGATTTGTTATGGTAGATTCAATCCGACTTACTGCAACTTCAGGGGT
65 TGCAACCTCAGAAAGATAAGATTCGTCATGGTAGATTCAATCCGACCCACTGCAACTTCAGGGGT
*
60848263 ATAGGATTT
130 ATAGGAATT
60848272 GTAGCTTCAAT
1 GTAGCTTCAAT
60848283 ATGTTCCATT
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
138 42 0.33
139 82 0.65
140 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (138 bp):
GTAGCTTCAATCAAACACACTACAACTTCAGGGACACAGGATTTGTAGCTTCATCTTGCTCCACT
GCAACCTCAGAAAGATAAGATTCGTCATGGTAGATTCAATCCGACCCACTGCAACTTCAGGGGTA
TAGGAATT
Found at i:60848204 original size:44 final size:44
Alignment explanation
Indices: 60847917--60848670 Score: 160
Period size: 44 Copynumber: 16.3 Consensus size: 44
60847907 TCATTCCAAC
* *
60847917 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATTTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * ** *
60847961 CTACTGCAACTTTAGGGAGGTAAGATTCGCTATGGTAGCTTCAATC-TGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T---T-T-GTAGCTTC-ATCTTG-CT
* ** *
60848011 ACACTGCAACTTCAGGGGCACAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * ** * * * *
60848055 CCATTGCAACCTCAATGAGATAAGATTCGTCATTGTAGTTTGTAT-TCTGAC-
1 CCACTGCAACTTCAGGGATATAGGA----T--TTGTAGCTT-CATCT-TG-CT
* * ***
60848106 CCACTGCAACTTCAGGGGTATAGGAATTGTAGCTTCAATC-AAAT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* *
60848150 CAACTACAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* ** * * * *
60848194 CCACTGCAACTTTAGAAAGATAAGATTTGTTATGGTAGATTCAATC-CGACT
1 CCACTGCAACTTCAGGGATATAGGA----TT-T-GTAGCTTC-ATCTTG-CT
* * * *
60848245 -TACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAAT-ATGTT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* * * * * * *
60848288 CCATTGCAACTTCAAGGAGATAATATTCGCTATGGTAGTTTCA-ATT-CAAC
1 CCACTGCAACTTC-AGG-GAT-ATA--GGAT-TTGTAGCTTCATCTTGC--T
* * **
60848338 CCACTGCAACTTCAAGGG-TATATGATTTGTAG-TTGCAACTTTATT
1 CCACTGCAACTTC-AGGGATATAGGATTTGTAGCTT-CATC-TTGCT
* * * *
60848383 CCAACCTATTGCAACTTCAGGGGTATAGAAATTGTAGCTTCAATC-TGAT
1 CC-A-C---TGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
** * *
60848432 CCACTAAAACTTCAGGGATGTAGGATTTGTAGCTTCATCTTACT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* * * * ** *
60848476 CCACTACAACTTCAGGGAGATA-GATATGCTATGGTAGA-CTCGGC-
1 CCACTGCAACTTCAGGGATATAGGATTTG-TA-GCTTCATCT-TGCT
* * * * * ***
60848520 CTACTGCAACTTTAGGGGTGTAAGATTTATAGTTGTAGCTTCATTCCAAC-
1 CCACTGCAACTTCAGGGATAT-AG---GAT--TTGTAGCTTCA-TCTTGCT
* *
60848570 CCACTGCAACTTCAGGG-TATAGGAATTGTAGCTTCAATC-TGAT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCT
* * ** *
60848613 ACATTGCTGCTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
* *
60848657 CTACTACAACTTCA
1 CCACTGCAACTTCA
60848671 AGGAGATAAG
Statistics
Matches: 500, Mismatches: 139, Indels: 142
0.64 0.18 0.18
Matches are distributed among these distances:
43 46 0.09
44 220 0.44
45 26 0.05
46 8 0.02
47 8 0.02
48 8 0.02
49 23 0.05
50 123 0.25
51 37 0.07
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
Found at i:60848260 original size:94 final size:93
Alignment explanation
Indices: 60848156--60848369 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 93
60848146 AAATCAACTA
* *
60848156 CAACTTCAGGGATATAGGATTTGTAGCTTC-ATCTTGCTCCACTGCAACTT-TAGAAAGATAAGA
1 CAACTTCAGGG-TATAGGATTTGTAGCTTCAAT-ATGCTCCACTGCAACTTCAAG-AAGATAAGA
* * * **
60848219 TTTGTTATGGTAGATTCAATCCGACTTACTG
63 TTCGCTATGGTAGATTCAATCCAACCCACTG
* * * *
60848250 CAACTTCAGGGGTATAGGATTTGTAGCTTCAATATGTTCCATTGCAACTTCAAGGAGATAATATT
1 CAACTTCA-GGGTATAGGATTTGTAGCTTCAATATGCTCCACTGCAACTTCAAGAAGATAAGATT
* *
60848315 CGCTATGGTAGTTTCAATTCAACCCACTG
65 CGCTATGGTAGATTCAATCCAACCCACTG
*
60848344 CAACTTCAAGGGTATATGATTTGTAG
1 CAACTTC-AGGGTATAGGATTTGTAG
60848370 TTGCAACTTT
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
94 94 0.92
95 8 0.08
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (93 bp):
CAACTTCAGGGTATAGGATTTGTAGCTTCAATATGCTCCACTGCAACTTCAAGAAGATAAGATTC
GCTATGGTAGATTCAATCCAACCCACTG
Found at i:60848436 original size:94 final size:93
Alignment explanation
Indices: 60848338--60848644 Score: 215
Period size: 93 Copynumber: 3.3 Consensus size: 93
60848328 TCAATTCAAC
*
60848338 CCACTGCAACTTCAAGGGTATATGATTTGTAGTTGCAACTTTATTCCAACCTATTGCAACTTCAG
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAGTTGCAACTTTATTCCAACCTA-TGCAACTTCAG
60848403 GGGTATAGAAATTGTAGCTTCAATCTGAT
65 GGGTATAGAAATTGTAGCTTCAATCTGAT
** * * *
60848432 CCACTAAAACTTC-AGGGATGTAGGATTTGTAGCTT-CATC-TTACTCC-A-CTA--CAACTTCA
1 CCACTGCAACTTCAAGGG-TATAGGATTTGTAG-TTGCAACTTTATTCCAACCTATGCAACTTCA
* * ** * *
60848490 GGGAG-ATAGATA-TGCTATGGTAGACTC-G-G
64 GGG-GTATAGAAATTG-TA-GCTTCAATCTGAT
* * * * * * * * *
60848519 CCTACTGCAACTTTAGGGGTGTAAGATTTATAGTTGTAGCTTCATTCCAACCCACTGCAACTTCA
1 CC-ACTGCAACTTCAAGGGTATAGGATTTGTAGTTGCAACTTTATTCCAACCTA-TGCAACTTCA
*
60848584 -GGGTATAGGAATTGTAGCTTCAATCTGAT
64 GGGGTATAGAAATTGTAGCTTCAATCTGAT
* * ** *
60848613 ACATTGCTGCTTCAGGGGTATAGGATTTGTAG
1 CCACTGCAACTTCAAGGGTATAGGATTTGTAG
60848645 CTTCATCTTG
Statistics
Matches: 157, Mismatches: 38, Indels: 37
0.68 0.16 0.16
Matches are distributed among these distances:
87 6 0.04
88 42 0.27
89 14 0.09
90 1 0.01
91 5 0.03
92 7 0.04
93 43 0.27
94 37 0.24
95 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (93 bp):
CCACTGCAACTTCAAGGGTATAGGATTTGTAGTTGCAACTTTATTCCAACCTATGCAACTTCAGG
GGTATAGAAATTGTAGCTTCAATCTGAT
Found at i:60848605 original size:43 final size:44
Alignment explanation
Indices: 60848552--60848650 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 44
60848542 AGATTTATAG
*
60848552 TTGTAGCTTCATTCCAACCCACTGCAACTTCA-GGGTATAGGAA
1 TTGTAGCTTCATTCCAACACACTGCAACTTCAGGGGTATAGGAA
* ** * * ** *
60848595 TTGTAGCTTCAATCTGATACATTGCTGCTTCAGGGGTATAGGAT
1 TTGTAGCTTCATTCCAACACACTGCAACTTCAGGGGTATAGGAA
60848639 TTGTAGCTTCAT
1 TTGTAGCTTCAT
60848651 CTTGCTCTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
43 24 0.53
44 21 0.47
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (44 bp):
TTGTAGCTTCATTCCAACACACTGCAACTTCAGGGGTATAGGAA
Found at i:60848639 original size:181 final size:183
Alignment explanation
Indices: 60848251--60848693 Score: 500
Period size: 181 Copynumber: 2.4 Consensus size: 183
60848241 GACTTACTGC
* * *
60848251 AACTTCAGGGGTATAGGATTTGTAGCTTCAATATGT-TCCATTGCAACTTCAAGGAGATAATATT
1 AACTTCAGGGGTATAGGATTTGTAGCTTC-ATCT-TCTCCACTACAACTTCAAGGAGATAATATT
* * * *
60848315 CGCTATGGTAGTTTCAATTCAACCCACTGCAACTTCAAGGGTATATGATTTGTAGTTGCAACTTT
64 CGCTATGGTAG--T--ACTCAACCCACTGCAACTTCAAGGGTATAAGATTTATAGTTGCAACTTC
* * *
60848380 ATTCCAACCTATTGCAACTTCAGGGGTATAGAAATTGTAGCTTCAATCTGATCCACTAA
125 ATTCCAACCCACTGCAACTTCAGGGGTATAGAAATTGTAGCTTCAATCTGATACACTAA
* * *
60848439 AACTTCAGGGATGTAGGATTTGTAGCTTCATCTTACTCCACTACAACTTCAGGGAGATAGATA-T
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTT-CTCCACTACAACTTCAAGGAGATA-ATATT
** * * * * * *
60848503 -GCTATGGTAG-ACTCGGCCTACTGCAACTTTAGGGGTGTAAGATTTATAGTTGTAGCTTCATTC
64 CGCTATGGTAGTACTCAACCCACTGCAACTTCAAGGGTATAAGATTTATAGTTGCAACTTCATTC
* * **
60848566 CAACCCACTGCAACTTCA-GGGTATAGGAATTGTAGCTTCAATCTGATACATTGC
129 CAACCCACTGCAACTTCAGGGGTATAGAAATTGTAGCTTCAATCTGATACACTAA
** * *
60848620 TGCTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCTACTACAACTTCAAGGAGATAAGATTC
1 AACTTCAGGGGTATAGGATTTGTAGCTTCATCTT-CTCCACTACAACTTCAAGGAGATAATATTC
*
60848685 GTTATGGTA
65 GCTATGGTA
60848694 ACTTCAATCC
Statistics
Matches: 216, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
180 2 0.01
181 84 0.39
182 65 0.30
186 1 0.00
187 13 0.06
188 48 0.22
189 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (183 bp):
AACTTCAGGGGTATAGGATTTGTAGCTTCATCTTCTCCACTACAACTTCAAGGAGATAATATTCG
CTATGGTAGTACTCAACCCACTGCAACTTCAAGGGTATAAGATTTATAGTTGCAACTTCATTCCA
ACCCACTGCAACTTCAGGGGTATAGAAATTGTAGCTTCAATCTGATACACTAA
Found at i:60856906 original size:22 final size:21
Alignment explanation
Indices: 60856877--60856920 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
60856867 CTACAAACCC
60856877 AAAAAAACCAAAAAAAAGAAG
1 AAAAAAACCAAAAAAAAGAAG
* *
60856898 AAAAGAAACGAAAAAAAGGAAG
1 AAAA-AAACCAAAAAAAAGAAG
60856920 A
1 A
60856921 TGAGGGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAACCAAAAAAAAGAAG
Found at i:60857718 original size:16 final size:16
Alignment explanation
Indices: 60857687--60857723 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
60857677 ATGTGAATAA
60857687 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
60857703 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
60857719 TATTA
1 TATTA
60857724 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:60858053 original size:22 final size:19
Alignment explanation
Indices: 60858025--60858072 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 19
60858015 GAAAAAAAAC
60858025 TTATTTTATATTGATCTGTAAA
1 TTATTTTATATTGA-C--TAAA
*
60858047 TTATTTTCTATTGACTAAA
1 TTATTTTATATTGACTAAA
60858066 TTATTTT
1 TTATTTT
60858073 CTGTAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 11 0.44
21 1 0.04
22 13 0.52
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (19 bp):
TTATTTTATATTGACTAAA
Found at i:60859547 original size:15 final size:15
Alignment explanation
Indices: 60859520--60859574 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
60859510 AAAAATGGCA
*
60859520 GGAGGAGGGGGTGGT
1 GGAGGAGGAGGTGGT
* *
60859535 GGTGGAGGAGGTGGA
1 GGAGGAGGAGGTGGT
60859550 GGAGGAGGAGGTGGT
1 GGAGGAGGAGGTGGT
*
60859565 GGCGGAGGAG
1 GGAGGAGGAG
60859575 CTGCACCACC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.18, C:0.02, G:0.69, T:0.11
Consensus pattern (15 bp):
GGAGGAGGAGGTGGT
Found at i:60859559 original size:18 final size:18
Alignment explanation
Indices: 60859519--60859574 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
60859509 AAAAAATGGC
* * *
60859519 AGGAGGAGGGGGTGGTGG
1 AGGAGGAGGTGGAGGAGG
*
60859537 TGGAGGAGGTGGAGGAGG
1 AGGAGGAGGTGGAGGAGG
* *
60859555 AGGAGGTGGTGGCGGAGG
1 AGGAGGAGGTGGAGGAGG
60859573 AG
1 AG
60859575 CTGCACCACC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.02, G:0.68, T:0.11
Consensus pattern (18 bp):
AGGAGGAGGTGGAGGAGG
Found at i:60872571 original size:13 final size:12
Alignment explanation
Indices: 60872546--60872580 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
60872536 GGTTTGCTTC
60872546 TCATGTTTATAA
1 TCATGTTTATAA
*
60872558 TCATGTTTGTTAA
1 TCATGTTT-ATAA
60872571 TCATGTTTAT
1 TCATGTTTAT
60872581 CTTATGCCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (12 bp):
TCATGTTTATAA
Found at i:60873796 original size:38 final size:38
Alignment explanation
Indices: 60873754--60873830 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
60873744 TCCTGCTCTT
*
60873754 TTTTGCAGTTCAACGACATGATAAATGTGCTGTTCTCA
1 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
60873792 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
1 TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
60873830 T
1 T
60873831 CCGAAGCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (38 bp):
TTTTGCAGTTCAACGACATGATAAATGTGCCGTTCTCA
Found at i:60877121 original size:80 final size:81
Alignment explanation
Indices: 60877036--60877195 Score: 214
Period size: 83 Copynumber: 2.0 Consensus size: 81
60877026 AGAATTAATT
* * ** *
60877036 TTTTTAATTATTTTACAAGAAATTTTTAGC-ATTTATGTTAAAATAAATTTATAAAATATTTATT
1 TTTTTAATTATTTAACAAGAAATTTTTAACAATTTATGCCAAAATAAATTTATAAAAGATTTATT
*
60877100 TAACACTTGAATCCTA
66 TAACAATTGAATCCTA
* * *
60877116 TTTTTAATTATTTAACAAGGACTTTTTAACAATATTTATGCCAAAATATATTTATAAAAGATTTA
1 TTTTTAATTATTTAACAAGAAATTTTTAAC-A-ATTTATGCCAAAATAAATTTATAAAAGATTTA
60877181 TTTAACAATTGAATC
64 TTTAACAATTGAATC
60877196 TTAGTTAAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 26 0.38
83 42 0.62
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (81 bp):
TTTTTAATTATTTAACAAGAAATTTTTAACAATTTATGCCAAAATAAATTTATAAAAGATTTATT
TAACAATTGAATCCTA
Found at i:60880599 original size:16 final size:17
Alignment explanation
Indices: 60880578--60880609 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
60880568 TCAATCGATT
60880578 TAATTAT-AATAATTAG
1 TAATTATAAATAATTAG
60880594 TAATTATAAATAATTA
1 TAATTATAAATAATTA
60880610 TAAGCTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATTAG
Found at i:60881583 original size:21 final size:21
Alignment explanation
Indices: 60881550--60881589 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
60881540 ATATAAATAG
*
60881550 TTTTTAAAATTTTTATGAACA
1 TTTTTAAAATTTTAATGAACA
* *
60881571 TTTTTGAATTTTTAATGAA
1 TTTTTAAAATTTTAATGAA
60881590 GTGCGCGTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATTTTAATGAACA
Found at i:60887159 original size:22 final size:21
Alignment explanation
Indices: 60887126--60887166 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
60887116 GTTTAGCAGC
60887126 TATTTTTCGTGTT-TTTGGGT
1 TATTTTTCGTGTTGTTTGGGT
60887146 TATTGTTTCAGTGTTGTTTGG
1 TATT-TTTC-GTGTTGTTTGG
60887167 AGTCGGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 4 0.22
22 5 0.28
23 5 0.28
ACGTcount: A:0.07, C:0.05, G:0.27, T:0.61
Consensus pattern (21 bp):
TATTTTTCGTGTTGTTTGGGT
Found at i:60891092 original size:22 final size:22
Alignment explanation
Indices: 60891056--60891097 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60891046 AAGATATAAT
* *
60891056 GTCTTCTTCAATAATTGATTCA
1 GTCTTCCTCAATAATGGATTCA
*
60891078 GTCTTCCTCATTAATGGATT
1 GTCTTCCTCAATAATGGATT
60891098 AAGATTTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (22 bp):
GTCTTCCTCAATAATGGATTCA
Found at i:60893347 original size:21 final size:22
Alignment explanation
Indices: 60893317--60893369 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
60893307 GCTCAACTTA
* * *
60893317 AAGCAAAGGCAGCATCGAGGG-
1 AAGCAGAGGCAGCAACAAGGGC
60893338 AAGCAGAGGCAGCAACAAGGGC
1 AAGCAGAGGCAGCAACAAGGGC
60893360 AA-CAGAGGCA
1 AAGCAGAGGCA
60893370 ATAAGAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.42, C:0.21, G:0.36, T:0.02
Consensus pattern (22 bp):
AAGCAGAGGCAGCAACAAGGGC
Found at i:60895803 original size:126 final size:125
Alignment explanation
Indices: 60895570--60895863 Score: 439
Period size: 126 Copynumber: 2.3 Consensus size: 125
60895560 GTCCAAATAG
* * * * * *
60895570 GAACTACTGTAGCAAAAGAGCGTACACGTGGGAACTTCTTTCAGTACTTTTGCTGACATTGCATC
1 GAACAACTGTAGCAAAAGAGCGT-CATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCATC
* *
60895635 CTACTTGAAGCGTTTTTGACACTATTTGCTCAGAAGCATCTTCTCAAAATTATTTTTTC-A
65 CTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
60895695 GAAACAACTGTAGCAAAAGAGCGTCTATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCAT
1 G-AACAACTGTAGCAAAAGAGCGTC-ATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCAT
*
60895760 CCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCAA
64 CCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
* *
60895822 GAACTACTGTAGCAAAAGAGCGTCCATGTAGGAGCTT-TTTTA
1 GAACAACTGTAGCAAAAGAGCGT-CATGTGGGAGCTTCTTTTA
60895864 AATTAACAAC
Statistics
Matches: 154, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
125 7 0.05
126 144 0.94
127 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (125 bp):
GAACAACTGTAGCAAAAGAGCGTCATGTGGGAGCTTCTTTTAGTACTTTTGCTAACAATGCATCC
TACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAA
Found at i:60896107 original size:98 final size:95
Alignment explanation
Indices: 60895906--60896081 Score: 257
Period size: 98 Copynumber: 1.8 Consensus size: 95
60895896 ACCCCAATCA
60895906 CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAATTTTTTTTAAAAT
1 CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAA-TTTTTTTAAAAT
* *
60895971 TTATAATTAATTTACTTAAGTAACCCAAAACC
65 TTATAATTAATTAACCTAAG-AACCCAAAACC
* *
60896003 CTAATTTATTTGATTTTTTCCTTAAAAA-CTATAAACGCTAAACCCTAATCTAA-TTTTTTAAAA
1 CTAATTTATTTGA-TTTTTCCTTAAAAACCCA-AAACACTAAACCCTAATCTAATTTTTTTAAAA
60896066 TTTATAATTAACTTAA
64 TTTATAATTAA-TTAA
60896082 ACCCTAAAAC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
96 21 0.29
97 18 0.25
98 34 0.47
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.41
Consensus pattern (95 bp):
CTAATTTATTTGATTTTTCCTTAAAAACCCAAAACACTAAACCCTAATCTAATTTTTTTAAAATT
TATAATTAATTAACCTAAGAACCCAAAACC
Found at i:60901386 original size:28 final size:28
Alignment explanation
Indices: 60901344--60901397 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
60901334 CACTCTAGAT
* *
60901344 TTAAAAACTATTGATATTAATAATTTTA
1 TTAAAAAATAATGATATTAATAATTTTA
*
60901372 TTAAAAAATAATGATATTAATGATTT
1 TTAAAAAATAATGATATTAATAATTT
60901398 GGACCAAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (28 bp):
TTAAAAAATAATGATATTAATAATTTTA
Found at i:60919435 original size:34 final size:35
Alignment explanation
Indices: 60919389--60919463 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 35
60919379 GTTCTCCATA
**
60919389 CTAAACTACTTTCAATCT-CGTGATGACATAAACC
1 CTAAACTACTTTCAATCTCCGTGAACACATAAACC
*
60919423 CTAAACTGCTTTCAATCTCGCGTGAACACATAAACC
1 CTAAACTACTTTCAATCTC-CGTGAACACATAAACC
60919459 CTAAA
1 CTAAA
60919464 AACTAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 17 0.47
36 19 0.53
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.27
Consensus pattern (35 bp):
CTAAACTACTTTCAATCTCCGTGAACACATAAACC
Found at i:60923437 original size:22 final size:22
Alignment explanation
Indices: 60923415--60923456 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
60923405 TTAATTAAAT
*
60923415 TTTAA-ATTTTTTAGAATTTAA
1 TTTAAGATTTTTTAAAATTTAA
60923436 TTTAATGATTTTTTAAAATTT
1 TTTAA-GATTTTTTAAAATTT
60923457 TTATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
23 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTAAGATTTTTTAAAATTTAA
Found at i:60924630 original size:28 final size:28
Alignment explanation
Indices: 60924587--60924656 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
60924577 TCTGTTTTCC
*
60924587 AGATTTTATAGTTTCCCCCTATTTT-TT
1 AGATTTTATAGTTTTCCCCTATTTTGTT
60924614 AGATTTTATAGTTTTCCCCTATTTTGTT
1 AGATTTTATAGTTTTCCCCTATTTTGTT
*
60924642 AGATTTTACAGTTTT
1 AGATTTTATAGTTTT
60924657 GTCCTATACT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.56
Consensus pattern (28 bp):
AGATTTTATAGTTTTCCCCTATTTTGTT
Found at i:60930475 original size:39 final size:39
Alignment explanation
Indices: 60930421--60930495 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
60930411 ATGTATATAT
*
60930421 ATTTTATGGCATTAAATTCACTTCAAGGAAAACATACAC
1 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATACAC
60930460 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATA
1 ATTTTATGGCATTAAATTCACTTCAAAGAAAACATA
60930496 TCATACATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (39 bp):
ATTTTATGGCATTAAATTCACTTCAAAGAAAACATACAC
Found at i:60937911 original size:41 final size:41
Alignment explanation
Indices: 60937860--60937960 Score: 114
Period size: 41 Copynumber: 2.5 Consensus size: 41
60937850 TTTAAACAGA
* * ** *
60937860 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTTTAATTCTG
1 TTCACCGGCACTT-AGCCTGATAGGCCTATAGCCTAATTCAG
* * *
60937901 TTCACCGGCACTTAGCCTGCTGGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGATAGGCCTATAGCCTAATTCAG
60937942 TTCACCGGCACTTAGCCTG
1 TTCACCGGCACTTAGCCTG
60937961 CTAGATGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.02
41 50 0.98
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.32
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGATAGGCCTATAGCCTAATTCAG
Found at i:60937987 original size:41 final size:41
Alignment explanation
Indices: 60937900--60937979 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
60937890 GTTTAATTCT
* * *
60937900 GTTCACCGGCACTTAGCCTGCTGGGCCTATAGCCTGATTCA
1 GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAATCA
** *
60937941 GTTCACCGGCACTTAGCCTGCTAGATGTATAGTCTGAAT
1 GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAAT
60937980 ATTTTCACTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.29
Consensus pattern (41 bp):
GTTCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAATCA
Found at i:60943547 original size:6 final size:6
Alignment explanation
Indices: 60943536--60943561 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
60943526 TCATATATAG
60943536 TCAGAT TCAGAT TCAGAT TCAGAT TC
1 TCAGAT TCAGAT TCAGAT TCAGAT TC
60943562 GGACTTAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (6 bp):
TCAGAT
Found at i:60951420 original size:37 final size:37
Alignment explanation
Indices: 60951365--60951494 Score: 197
Period size: 37 Copynumber: 3.5 Consensus size: 37
60951355 ACCGAAACAC
* *
60951365 GCTCGTAAGAGCTAATCCACCCGATAACATGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
*
60951402 GCTCATAAGAGCTAATCCACCTGATAACACGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
* *
60951439 GCTTATAAGAGCTAGTCCACCCGATAACACGCCAGAT
1 GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
* *
60951476 GCTCATAAAAGCTAGTCCA
1 GCTCATAAGAGCTAATCCA
60951495 ACTGAAAATA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (37 bp):
GCTCATAAGAGCTAATCCACCCGATAACACGCCAGAT
Found at i:60961238 original size:40 final size:40
Alignment explanation
Indices: 60961000--60961224 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
60960990 TCGAATGATG
* * * *
60961000 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
60961040 TCCGGACTAAAAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
60961080 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60961119 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60961159 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60961200 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60961225 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 37 0.22
40 116 0.70
41 12 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60964858 original size:25 final size:26
Alignment explanation
Indices: 60964817--60964882 Score: 91
Period size: 28 Copynumber: 2.5 Consensus size: 26
60964807 AGTGTAACTT
60964817 TTTTTGAAATAATTT-AAT-ATACTA
1 TTTTTGAAATAATTTAAATAATACTA
*
60964841 TTTTTGAAATAATATTAAAATAATATTA
1 TTTTTGAAATAAT-TT-AAATAATACTA
60964869 TTTTTGAAATAATT
1 TTTTTGAAATAATT
60964883 AATCTAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
24 13 0.35
25 2 0.05
27 4 0.11
28 18 0.49
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (26 bp):
TTTTTGAAATAATTTAAATAATACTA
Found at i:60974987 original size:24 final size:23
Alignment explanation
Indices: 60974954--60975023 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 23
60974944 GGGTAGGATC
*
60974954 TGATTTTGTATTTGATATTGCATA
1 TGATTCTGTATTTGA-ATTGCATA
* * ** *
60974978 TGATTCTGTATCTAAGATTTTATT
1 TGATTCTGTATTTGA-ATTGCATA
*
60975002 TGAATCTGTATTTGAATTGCAT
1 TGATTCTGTATTTGAATTGCAT
60975024 CTGAAAACGT
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51
Consensus pattern (23 bp):
TGATTCTGTATTTGAATTGCATA
Found at i:60975529 original size:12 final size:12
Alignment explanation
Indices: 60975512--60975547 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
60975502 TTAATTTCTG
60975512 GTTTTAAAACGA
1 GTTTTAAAACGA
60975524 GTTTTAAAACGA
1 GTTTTAAAACGA
60975536 GTTTTAAAACGA
1 GTTTTAAAACGA
60975548 ACGTATGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (12 bp):
GTTTTAAAACGA
Found at i:60979574 original size:99 final size:100
Alignment explanation
Indices: 60979431--60979630 Score: 393
Period size: 99 Copynumber: 2.0 Consensus size: 100
60979421 ACGAATTGAT
60979431 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
1 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
60979496 AATTTTAAATATTTAAATACATTATAATAAAATTA
66 AATTTTAAATATTTAAATACATTATAATAAAATTA
60979531 TGATTTTATAATTGAATTGG-TTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
1 TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
60979595 AATTTTAAATATTTAAATACATTATAATAAAATTA
66 AATTTTAAATATTTAAATACATTATAATAAAATTA
60979630 T
1 T
60979631 AAAATTTTAA
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 80 0.80
100 20 0.20
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (100 bp):
TGATTTTATAATTGAATTGGTTTTTTTTTTCATCCGTAAATTAATGATTTGGATCTGGTTTTAAA
AATTTTAAATATTTAAATACATTATAATAAAATTA
Found at i:60981898 original size:19 final size:20
Alignment explanation
Indices: 60981874--60981911 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
60981864 AGGAAATTTG
60981874 AGGATCAAATT-ATAGAATT
1 AGGATCAAATTGATAGAATT
60981893 AGGATCAAATTGATAGAAT
1 AGGATCAAATTGATAGAAT
60981912 ATGTAAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (20 bp):
AGGATCAAATTGATAGAATT
Found at i:60982159 original size:22 final size:23
Alignment explanation
Indices: 60982131--60982175 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60982121 ATACAATCTT
60982131 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
60982153 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
60982176 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:60995434 original size:27 final size:29
Alignment explanation
Indices: 60995402--60995465 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
60995392 AATTAAAATT
**
60995402 AATTTATTTAT-TTTTTAAAATATTAA-A
1 AATTTATTTATGTTTACAAAATATTAATA
*
60995429 ATTTTATTTTATGTTTACAAAATATTAATA
1 AATTTA-TTTATGTTTACAAAATATTAATA
60995459 AATTTAT
1 AATTTAT
60995466 AATAATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 5 0.17
28 5 0.17
29 14 0.47
30 6 0.20
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (29 bp):
AATTTATTTATGTTTACAAAATATTAATA
Found at i:61006289 original size:39 final size:40
Alignment explanation
Indices: 61006214--61006289 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 40
61006204 TTTCAGTTTA
* * **
61006214 TATATATTATAAATTTTTATTTTTTTGTAAATTTATAAAT
1 TATAAATTATAAATTTTTATTATTTTCAAAATTTATAAAT
61006254 TATAAATTAT-AATTTTTA-TATTTTCAAAATATTATA
1 TATAAATTATAAATTTTTATTATTTTCAAAAT-TTATA
61006290 GGCTCTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 9 0.29
39 13 0.42
40 9 0.29
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (40 bp):
TATAAATTATAAATTTTTATTATTTTCAAAATTTATAAAT
Found at i:61009666 original size:58 final size:54
Alignment explanation
Indices: 61009588--61009718 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 54
61009578 GATTATTGTT
61009588 ATTAAATTTTAATA-AGATTATTATTAAACATAATTTAATAAAAATAATAAATAATTTA
1 ATTAAATTTTAATATA-ATTATTATTAAACATAATTTAAT-AAAA-AAT--ATAATTTA
* * *
61009646 ATTATATTTTAATATAATTATTATTAAATATGATTTAATAAAAAATATAATTTA
1 ATTAAATTTTAATATAATTATTATTAAACATAATTTAATAAAAAATATAATTTA
61009700 A-TAACATTTTTAATATAAT
1 ATTAA-A-TTTTAATATAAT
61009719 ATAATATAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
53 2 0.03
54 10 0.15
55 12 0.18
56 3 0.05
57 4 0.06
58 34 0.52
59 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (54 bp):
ATTAAATTTTAATATAATTATTATTAAACATAATTTAATAAAAAATATAATTTA
Found at i:61009693 original size:17 final size:17
Alignment explanation
Indices: 61009671--61009703 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61009661 AATTATTATT
*
61009671 AAATATGATTTAATAAA
1 AAATATAATTTAATAAA
61009688 AAATATAATTTAATAA
1 AAATATAATTTAATAA
61009704 CATTTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:61009708 original size:27 final size:27
Alignment explanation
Indices: 61009678--61009743 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
61009668 ATTAAATATG
*
61009678 ATTTAATAA-AAAATATAATTTAATAAC
1 ATTT-ATAATAAAATATAATATAATAAC
* * *
61009705 ATTTTTAATATAATATAATATAATAAT
1 ATTTATAATAAAATATAATATAATAAC
*
61009732 A-TTATATTAAAA
1 ATTTATAATAAAA
61009744 GAGTTTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
ATTTATAATAAAATATAATATAATAAC
Found at i:61017212 original size:15 final size:14
Alignment explanation
Indices: 61017186--61017225 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
61017176 GATTCATTCA
61017186 ATTT-TTTATTTATT
1 ATTTATTTATTT-TT
61017200 A-TT-TTTATTTTT
1 ATTTATTTATTTTT
61017212 ATTTATTTATTTTT
1 ATTTATTTATTTTT
61017226 TTTCTTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.12
13 11 0.46
14 10 0.42
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
ATTTATTTATTTTT
Found at i:61017212 original size:19 final size:20
Alignment explanation
Indices: 61017188--61017225 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
61017178 TTCATTCAAT
61017188 TTTTTATTTA-TTATTTTTA
1 TTTTTATTTATTTATTTTTA
61017207 TTTTTATTTATTTATTTTT
1 TTTTTATTTATTTATTTTT
61017226 TTTCTTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTATTTATTTATTTTTA
Found at i:61017415 original size:3 final size:3
Alignment explanation
Indices: 61017409--61017439 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
61017399 TACTACGCGG
61017409 ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
61017440 TCTTATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:61029890 original size:44 final size:45
Alignment explanation
Indices: 61029746--61030713 Score: 769
Period size: 44 Copynumber: 22.0 Consensus size: 45
61029736 ATAGGTCCTA
* * *
61029746 TCTTCCTATATTGGTAG-GAAGTAGATCAAAGAT-GCAAATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
61029789 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATATTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * * *
61029834 TCTTCATGTATTGG-CGTGAAGAAGATCGAAGGTAGCCGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* *
61029878 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
61029921 TCTTCCCATATTGGTGGCGAAGCAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * * * *
61029966 TCTTCATGTATTGG-CATGAAGAAGATCGAAGGTAGCAGGTCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * *
61030010 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-CCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * ** *
61030053 TCTTCCCATATTGATGGCAAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
61030098 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATATCAGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * *
61030142 TCTTCCTATATTGGTAG-GAAGTGGACCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
61030185 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
61030230 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * *
61030274 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
61030317 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAACAGGTCTGG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * *
61030361 TCTTCCTGTATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
61030404 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * **
61030449 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGGTCCGG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
61030493 TCTTCCTGTATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
61030536 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * *
61030581 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
61030625 TC--CCTGTATTTGG-CAATGAAATAGATTGAGGATTGCAGATCTTG
1 TCTTCCTATA-TTGGTC-GTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * * * *
61030669 CCTTCCTGTATTTGTCAGCGAAGCAGATCGACGATGGCGGATCTT
1 TCTTCCTATATTGGTC-GTGAAGTAGATCGAAGATAGCAGATCTT
61030714 ACCTCCCTGA
Statistics
Matches: 722, Mismatches: 178, Indels: 47
0.76 0.19 0.05
Matches are distributed among these distances:
42 6 0.01
43 159 0.22
44 400 0.55
45 129 0.18
46 28 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (45 bp):
TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:61029978 original size:132 final size:132
Alignment explanation
Indices: 61029741--61030626 Score: 1079
Period size: 132 Copynumber: 6.7 Consensus size: 132
61029731 CGTAAATAGG
* * *
61029741 TCCTATCTTCCTATATTGGTAGGAAGTAGATCAAAGATGCAAATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * * * *
61029806 CGAAGTAGATCGCAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGAAGATCGAAGGTAGCC
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
61029871 GA
131 GA
61029873 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * * * *
61029938 CGAAGCAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
*
61030003 GG
131 GA
* *
61030005 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATCCAGATCTTGTCTTCCCATATTGATGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
61030070 CAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
61030135 GA
131 GA
*
61030137 TCCTATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
61030202 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
61030267 GA
131 GA
* *** *
61030269 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTCATGTATTGG-CG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * * * * * *
61030333 TGAAGTAGATCGAAGGTAA-CAGGTCTGGTCTTCCTGTATTGGTAG-GAAGTGGATCGAAGAT-G
66 CGAAGTAGATCGAA-GAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
61030395 CAGA
129 CAGA
* * * * * * * ***
61030399 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-
1 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGT
* * * ** * * *
61030463 CGTGAAGTAGATCGAAGATAA-CAGGTCCGGTCTTCCTGTATTGGTAG-GAAGTGGATCGAAGAT
64 GGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
61030526 -GCAGA
127 AGCAGA
* * * * * * ***
61030531 TCTTATCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-
1 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGT
* *
61030595 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
64 GGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
61030627 CCTGTATTTG
Statistics
Matches: 694, Mismatches: 54, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
130 23 0.03
131 62 0.09
132 609 0.88
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
GA
Found at i:61030323 original size:219 final size:219
Alignment explanation
Indices: 61030072--61030540 Score: 778
Period size: 219 Copynumber: 2.1 Consensus size: 219
61030062 ATTGATGGCA
* * * *
61030072 AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGA
1 AAGTGGATCGAAG-ATGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGA
61030137 TCCT-ATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
65 T-CTGATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
* *
61030201 GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGC
129 GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAAC
*
61030266 AGATCCTATCTTCCTATATTGGTAGG
194 AGATCCGATCTTCCTATATTGGTAGG
* *
61030292 AAGTGGATCGAAGATGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAACAGGT
1 AAGTGGATCGAAGATGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
* * *
61030357 CTGGTCTTCCTGTATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
66 CTGATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
61030422 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAG
131 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAG
* * *
61030487 GTCCGGTCTTCCTGTATTGGTAGG
196 ATCCGATCTTCCTATATTGGTAGG
61030511 AAGTGGATCGAAGATGCAGATCTTATCTTC
1 AAGTGGATCGAAGATGCAGATCTTATCTTC
61030541 CCATATTGGT
Statistics
Matches: 233, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
218 2 0.01
219 219 0.94
220 12 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (219 bp):
AAGTGGATCGAAGATGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
CTGATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAG
ATCCGATCTTCCTATATTGGTAGG
Found at i:61030474 original size:351 final size:353
Alignment explanation
Indices: 61029895--61030621 Score: 1165
Period size: 351 Copynumber: 2.1 Consensus size: 353
61029885 ATATTGGTAG
* * * * *
61029895 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGCAGATCGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATATTGGTAGCGAAGCAGATCGAAGAAAGCA
* *
61029959 GATCTTGTCTTCATGTATTGGCATGAAGAAGATCGAAGGTAGCAGGTCCTATCTTCCTATATTGG
66 GATCTTATCTTCATGTATTGGCATGAAGAAGATCGAAGGTAACAGGTCCTATCTTCCTATATTGG
61030024 TAGGAAGTGGATCGAAGATCCAGATCTTGTCTTCCCATATTGATGGCAAAGTAGATCGAAGAAAG
131 TAGGAAGTGGATCGAAGATCCAGATCTTGTCTTCCCATATTGATGGCAAAGTAGATCGAAGAAAG
* *
61030089 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATT
196 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCGATCTTCCTATATT
*
61030154 GGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
261 GGTAGGAAGTGGACCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
61030219 AGCAGATCTTGTCTTCATGTATTGGCGT
326 AGCAGATCTTGTCTTCATGTATTGGCGT
* * ** *
61030247 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATATTGGTAGCGAAGCAGATCGAAGAAAGCA
* * * *
61030310 GATCTTATCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAACAGGT-CTGGTCTTCCTGTATTG
66 GATCTTATCTTCATGTATTGGCATGAAGAAGATCGAAGGTAACAGGTCCT-ATCTTCCTATATTG
* * * *
61030374 GTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAA
130 GTAGGAAGTGGATCGAAGATCCAGATCTTGTCTTCCCATATTGATGGCAAAGTAGATCGAAGAAA
* * *
61030439 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGGTCCGGTCTTCCTGTAT
195 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCGATCTTCCTATAT
*
61030504 TGGTAGGAAGTGGATCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
260 TGGTAGGAAGTGGACCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGCAGA
61030569 AAGCAGATCTTGTCTTCATGTATTGGCGT
325 AAGCAGATCTTGTCTTCATGTATTGGCGT
*
61030598 GAAGTAGATCGAAGAAAGCAGATC
1 GAAGTAGATCGAAGATAGCAGATC
61030622 TTGTCCCTGT
Statistics
Matches: 344, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
350 2 0.01
351 294 0.85
352 25 0.07
353 23 0.07
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (353 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCCATATTGGTAGCGAAGCAGATCGAAGAAAGCA
GATCTTATCTTCATGTATTGGCATGAAGAAGATCGAAGGTAACAGGTCCTATCTTCCTATATTGG
TAGGAAGTGGATCGAAGATCCAGATCTTGTCTTCCCATATTGATGGCAAAGTAGATCGAAGAAAG
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCGATCTTCCTATATT
GGTAGGAAGTGGACCGAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
AGCAGATCTTGTCTTCATGTATTGGCGT
Found at i:61032643 original size:3 final size:3
Alignment explanation
Indices: 61032637--61032667 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
61032627 TACTACGCGG
61032637 ATT ATT ATT ATT ATT ATT ATT ATT ATGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
61032668 TCTTATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:61036048 original size:20 final size:21
Alignment explanation
Indices: 61036010--61036066 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
61036000 TTCGAAACAC
* *
61036010 TTTTAAAATCAAGTGAAAATGA
1 TTTTCAAA-CAAGTCAAAATGA
*
61036032 TTTT-AACCAAGTCAAAATGA
1 TTTTCAAACAAGTCAAAATGA
61036052 TTTTCAAACAAGTCA
1 TTTTCAAACAAGTCA
61036067 GAATTGCTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.52
21 11 0.35
22 4 0.13
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.32
Consensus pattern (21 bp):
TTTTCAAACAAGTCAAAATGA
Found at i:61042165 original size:40 final size:37
Alignment explanation
Indices: 61042083--61042165 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
61042073 ATATTTTATA
* *
61042083 TATATATATAGTAATAGTATTATGATAATTGTTCTTT
1 TATATATACAGTAATAATATTATGATAATTGTTCTTT
* * *
61042120 AATATATACGGTAATAATATTATGGTAATTGCTCTCTCTT
1 TATATATACAGTAATAATATTATGATAATTG-T-TCT-TT
61042160 TATATA
1 TATATA
61042166 GTAATTTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
37 26 0.70
38 1 0.03
39 3 0.08
40 7 0.19
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (37 bp):
TATATATACAGTAATAATATTATGATAATTGTTCTTT
Found at i:61052612 original size:17 final size:17
Alignment explanation
Indices: 61052579--61052612 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
61052569 TTTTTTTAGT
**
61052579 TTTTTTAAAAATTATAA
1 TTTTTTAAAAAACATAA
61052596 TTTTTTAAAAAACATAA
1 TTTTTTAAAAAACATAA
61052613 ATATTAGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTTTTAAAAAACATAA
Found at i:61056596 original size:55 final size:55
Alignment explanation
Indices: 61056512--61056621 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
61056502 TATTTTTCAG
61056512 AAGACAGTGTGGAGTCTCTGTCATGCAGCCTGTTAAAAAGAAGCTGGGGGATATT
1 AAGACAGTGTGGAGTCTCTGTCATGCAGCCTGTTAAAAAGAAGCTGGGGGATATT
61056567 AAGACAGTGTGGAGTCTCTGTCATGCAGCCTGTTAAAAAGAAGCTGGGGGATATT
1 AAGACAGTGTGGAGTCTCTGTCATGCAGCCTGTTAAAAAGAAGCTGGGGGATATT
61056622 TACTGTTGAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (55 bp):
AAGACAGTGTGGAGTCTCTGTCATGCAGCCTGTTAAAAAGAAGCTGGGGGATATT
Found at i:61057496 original size:30 final size:30
Alignment explanation
Indices: 61057462--61057524 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
61057452 ACTTAACAAG
61057462 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
61057492 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
61057522 CAA
1 CAA
61057525 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Done.