Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 199 of 222
Found at i:63415503 original size:44 final size:43
Alignment explanation
Indices: 63415361--63415503 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
63415351 TATGAATTTG
* *
63415361 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
63415405 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
63415452 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
63415496 TATAATTT
1 TATAATTT
63415504 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:63415518 original size:47 final size:47
Alignment explanation
Indices: 63415386--63415524 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
63415376 TTATTATTAC
* *
63415386 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
63415433 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
63415477 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
63415524 A
1 A
63415525 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:63420184 original size:27 final size:27
Alignment explanation
Indices: 63420154--63420209 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
63420144 CGATTACACC
63420154 CGTATTACCAATACTTTAAACCAAACA
1 CGTATTACCAATACTTTAAACCAAACA
63420181 CGTATTACCAATACTTTAAACCAAACA
1 CGTATTACCAATACTTTAAACCAAACA
63420208 CG
1 CG
63420210 GGAATAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.27, G:0.05, T:0.25
Consensus pattern (27 bp):
CGTATTACCAATACTTTAAACCAAACA
Found at i:63423635 original size:3 final size:3
Alignment explanation
Indices: 63423627--63423669 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
63423617 AAGAAGGAAC
63423627 AAT AAT AAT AAT GAA- AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
63423670 GGATTAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:63425506 original size:132 final size:132
Alignment explanation
Indices: 63425309--63426241 Score: 1341
Period size: 132 Copynumber: 7.1 Consensus size: 132
63425299 AACTTCAGAA
* * * * **
63425309 AGATAAGACCTG-TAATTTTCAACCTACTCTAG-TGCTGCTCAGGGAGATAAGGCTTAGTGGCTT
1 AGATAAGATCTGCT-ATCTTCAACCTACTC-CGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTT
* *
63425372 AAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGTTT
64 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTT
63425437 AGGG
129 AGGG
* * *
63425441 AGATAATATCTGTTATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTCGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* ** *
63425506 ATTTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
63425571 GG
131 GG
*
63425573 AGATAATATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* *
63425638 ATTTGCTTCCCACTATCTTGGAAAGATAAGATTT-ACTGTCTTCGATCTGCTCCACTACTGCTTA
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-GTCTTCGATCTGCTCCACTACTGCTTA
63425702 GGG
130 GGG
* *
63425705 AGATAATATCTGCTATCTTCAACCTACTCCGCTGCTGCTCACGGAGACAAGGCTCGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* *
63425770 ATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTTCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
63425835 GG
131 GG
* ** * *
63425837 AGATAAGATATGCTATCTTCAACCTACTCTACTGTTCCTCAGGGAGACAAGGCTCGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* * * *
63425902 ATCTGCTTCCTACTATCTTGGAAAGATAAGATTTGTCATCTTTGATCTGCTCCACTATTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
63425967 GG
131 GG
* * ** * *
63425969 AGATAAGATCTACAATCTTCAACCTGTTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* * * * * * *
63426034 ATCTGCTTCCCAATATCTTGAAAATATAAGATTTTTCGTTTTCAATCTGCTCCACTACTGCTTAA
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
63426099 GG
131 GG
* ** *
63426101 AGATAAGATCTGCTATCTTCAACCTGCTCTTCTGCTGCTCAGGGAGATAAGGCTCGGTGGCTTAA
1 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
* * * * *
63426166 ATCTGCATCCCACTATCTTGGAAAAATAAGATTTGTCGTCTTTGATCTACTCTACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
63426231 GG
131 GG
63426233 AGATAAGAT
1 AGATAAGAT
63426242 TTGTAATATT
Statistics
Matches: 726, Mismatches: 71, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
131 2 0.00
132 722 0.99
133 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (132 bp):
AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTCGGTGGCTTAA
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAG
GG
Found at i:63425592 original size:44 final size:44
Alignment explanation
Indices: 63425544--63425726 Score: 104
Period size: 44 Copynumber: 4.2 Consensus size: 44
63425534 AGATTTACCG
*
63425544 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAATATCTGCTA
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATAATATCTGCTA
* * * * * * * ** * *
63425588 TCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA-GGCTCGGTG
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATAATATCT-GCTA
* * * * * * * *
63425632 GCTTAAATTTGCTTCC-C-ACTATCTT-GGAAAGATAAGATTTACTG
1 TCTTCAATCTGC-TCCACTACTA-CTTAGG-GAGATAATATCTGCTA
* *
63425676 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAATATCTGCTA
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATAATATCTGCTA
63425720 TCTTCAA
1 TCTTCAA
63425727 CCTACTCCGC
Statistics
Matches: 93, Mismatches: 38, Indels: 16
0.63 0.26 0.11
Matches are distributed among these distances:
43 9 0.10
44 75 0.81
45 9 0.10
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTACTTAGGGAGATAATATCTGCTA
Found at i:63428345 original size:14 final size:15
Alignment explanation
Indices: 63428326--63428354 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63428316 TGGCCTTTCC
63428326 TTTTC-TTTTTCCTT
1 TTTTCTTTTTTCCTT
63428340 TTTTCTTTTTTCCTT
1 TTTTCTTTTTTCCTT
63428355 ATCTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTTTTCCTT
Found at i:63430594 original size:15 final size:16
Alignment explanation
Indices: 63430569--63430598 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63430559 GTCCAACCCC
63430569 TCCACTTTTCAAACCT
1 TCCACTTTTCAAACCT
63430585 TCCA-TTTTCAAACC
1 TCCACTTTTCAAACC
63430599 CCTCATCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37
Consensus pattern (16 bp):
TCCACTTTTCAAACCT
Found at i:63433937 original size:41 final size:41
Alignment explanation
Indices: 63433892--63434024 Score: 103
Period size: 41 Copynumber: 3.2 Consensus size: 41
63433882 TGTTTTGTTC
63433892 TTTGCATTTGAATGAAAAACTATGTTCAATGTGTCTGATTA
1 TTTGCATTTGAATGAAAAACTATGTTCAATGTGTCTGATTA
** * *** * *
63433933 TTTGCATTGTTTTATCACCGACTTTTGCTTC--T-T-TCTTGTTTTA
1 TTTGCA-T-TTGAATGAAAAAC-TATG-TTCAATGTGTC-TG-ATTA
*
63433976 TTTGCATTTGAAGGAAAAACTATGTTCAATGTGTCTGATTA
1 TTTGCATTTGAATGAAAAACTATGTTCAATGTGTCTGATTA
63434017 TTTGCATT
1 TTTGCATT
63434025 GTTTTATCAC
Statistics
Matches: 65, Mismatches: 17, Indels: 20
0.64 0.17 0.20
Matches are distributed among these distances:
39 3 0.05
40 3 0.05
41 26 0.40
42 8 0.12
43 19 0.29
44 3 0.05
45 3 0.05
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (41 bp):
TTTGCATTTGAATGAAAAACTATGTTCAATGTGTCTGATTA
Found at i:63433980 original size:43 final size:43
Alignment explanation
Indices: 63433930--63434067 Score: 108
Period size: 43 Copynumber: 3.3 Consensus size: 43
63433920 ATGTGTCTGA
63433930 TTATTTGCATTGTTTTATCACCGACTTTTGCTTCTTTCTTGTT
1 TTATTTGCATTGTTTTATCACCGACTTTTGCTTCTTTCTTGTT
** ** *** * *
63433973 TTATTTGCA-T-TTGAAGGAAAAAC-TATG-TTCAATGTGTC-TG-A
1 TTATTTGCATTGTTTTATCACCGACTTTTGCTTC--T-T-TCTTGTT
*
63434014 TTATTTGCATTGTTTTATCACCGTCTTTTGCTTCTTTCTTGTT
1 TTATTTGCATTGTTTTATCACCGACTTTTGCTTCTTTCTTGTT
63434057 TTATTTGCATT
1 TTATTTGCATT
63434068 TGAAGGAAAA
Statistics
Matches: 66, Mismatches: 19, Indels: 20
0.63 0.18 0.19
Matches are distributed among these distances:
39 3 0.05
40 3 0.05
41 18 0.27
42 8 0.12
43 28 0.42
44 3 0.05
45 3 0.05
ACGTcount: A:0.17, C:0.15, G:0.14, T:0.54
Consensus pattern (43 bp):
TTATTTGCATTGTTTTATCACCGACTTTTGCTTCTTTCTTGTT
Found at i:63434033 original size:84 final size:84
Alignment explanation
Indices: 63433892--63434096 Score: 374
Period size: 84 Copynumber: 2.4 Consensus size: 84
63433882 TGTTTTGTTC
*
63433892 TTTGCATTTGAATGAAAAACTATGTTCAATGTGTCTGATTATTTGCATTGTTTTATCACCGACTT
1 TTTGCATTTGAAGGAAAAACTATGTTCAATGTGTCTGATTATTTGCATTGTTTTATCACCGACTT
63433957 TTGCTTCTTTCTTGTTTTA
66 TTGCTTCTTTCTTGTTTTA
*
63433976 TTTGCATTTGAAGGAAAAACTATGTTCAATGTGTCTGATTATTTGCATTGTTTTATCACCGTCTT
1 TTTGCATTTGAAGGAAAAACTATGTTCAATGTGTCTGATTATTTGCATTGTTTTATCACCGACTT
63434041 TTGCTTCTTTCTTGTTTTA
66 TTGCTTCTTTCTTGTTTTA
*
63434060 TTTGCATTTGAAGGAAAAAACTATGTTCTATGTGTCT
1 TTTGCATTTGAAGG-AAAAACTATGTTCAATGTGTCT
63434097 ACTTTAACTT
Statistics
Matches: 117, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
84 96 0.82
85 21 0.18
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (84 bp):
TTTGCATTTGAAGGAAAAACTATGTTCAATGTGTCTGATTATTTGCATTGTTTTATCACCGACTT
TTGCTTCTTTCTTGTTTTA
Found at i:63435992 original size:6 final size:6
Alignment explanation
Indices: 63435981--63436010 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63435971 GAGATTGAAG
63435981 ATAAGC ATAAGC ATAAGC ATAAGC ATAAGC
1 ATAAGC ATAAGC ATAAGC ATAAGC ATAAGC
63436011 CGATGCCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
ATAAGC
Found at i:63436066 original size:3 final size:3
Alignment explanation
Indices: 63436060--63436087 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63436050 AAGAAGACTT
63436060 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
63436088 ATAAAAGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:63442683 original size:22 final size:22
Alignment explanation
Indices: 63442642--63442683 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
63442632 TTAATATTCA
*
63442642 TTTTTTAGCTTTAGTCTCTTCG
1 TTTTTTAGCTTTAATCTCTTCG
* *
63442664 TTTTTTATCTTTAATTTCTT
1 TTTTTTAGCTTTAATCTCTT
63442684 GGGTTCCTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.14, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTTTTAGCTTTAATCTCTTCG
Found at i:63452581 original size:42 final size:42
Alignment explanation
Indices: 63452518--63452628 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
63452508 ACAATGAGTT
* * * *
63452518 ACACGGCCTGGACACATGCCCATGTCCTTGCCCGTATGGCTC
1 ACACGACCTGGGCACACGCCCATGTCCTTGCCCATATGGCTC
* *
63452560 ACACGACCTGGGCACACGCCCATGTCCTTGCCCATGTGGCTT
1 ACACGACCTGGGCACACGCCCATGTCCTTGCCCATATGGCTC
* * *
63452602 ACATGACTTGAGCACACGCCCATGTCC
1 ACACGACCTGGGCACACGCCCATGTCC
63452629 CTGACTGTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.21
Consensus pattern (42 bp):
ACACGACCTGGGCACACGCCCATGTCCTTGCCCATATGGCTC
Found at i:63460899 original size:44 final size:44
Alignment explanation
Indices: 63460814--63460902 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
63460804 GAGGGATATA
* * * * * *
63460814 GTGTAACACCCCTAACCCGTATCCATTGTCAGAATAGGGTTACG
1 GTGTAACAACCCTAACCCGTATCCATCGCCAAAACAAGGTTACG
* *
63460858 GTGTAACAACCTTAACCCGTATTCATCGCCAAAACAAGGTTACG
1 GTGTAACAACCCTAACCCGTATCCATCGCCAAAACAAGGTTACG
63460902 G
1 G
63460903 AGCATTACTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (44 bp):
GTGTAACAACCCTAACCCGTATCCATCGCCAAAACAAGGTTACG
Found at i:63461356 original size:15 final size:15
Alignment explanation
Indices: 63461332--63461367 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
63461322 TGGCAGTGTA
*
63461332 ACACACACGGCTGAG
1 ACACATACGGCTGAG
63461347 ACACATACGGCTGAG
1 ACACATACGGCTGAG
63461362 ACACAT
1 ACACAT
63461368 GCCCGTGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.36, C:0.31, G:0.22, T:0.11
Consensus pattern (15 bp):
ACACATACGGCTGAG
Found at i:63462236 original size:21 final size:20
Alignment explanation
Indices: 63462193--63462260 Score: 84
Period size: 21 Copynumber: 3.4 Consensus size: 20
63462183 TGAATACACC
* *
63462193 AACAGAAGCTCGAA-AGCTA
1 AACAGAAGCTCTAAGAGCTG
63462212 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTC-TAAGAGCTG
*
63462233 AACAGGAGCTCGTAAGAGCTG
1 AACAGAAGCTC-TAAGAGCTG
63462254 AACAGAA
1 AACAGAA
63462261 AGCAAAACAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 11 0.26
20 2 0.05
21 29 0.69
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (20 bp):
AACAGAAGCTCTAAGAGCTG
Found at i:63483903 original size:21 final size:21
Alignment explanation
Indices: 63483871--63484051 Score: 112
Period size: 21 Copynumber: 8.6 Consensus size: 21
63483861 GAAGCTCGAA
* *
63483871 AGCTGAACAGAAACTCATGAG
1 AGCTAAACAGAAACTCATAAG
* *
63483892 AGCTAAATAGAAGCTCATAAG
1 AGCTAAACAGAAACTCATAAG
63483913 AGCTAAACAGAAAC-CTATAAG
1 AGCTAAACAGAAACTC-ATAAG
* * * * *
63483934 GGTTGAACAGAAGCTCGTAAG
1 AGCTAAACAGAAACTCATAAG
*
63483955 AGCTTAACAGAAACTCATAAG
1 AGCTAAACAGAAACTCATAAG
* * * * *
63483976 AGTTGAATAGAAGCTCGTAAG
1 AGCTAAACAGAAACTCATAAG
* * * * *
63483997 GGTTGAACAGAAACTCGTATG
1 AGCTAAACAGAAACTCATAAG
* * * * *
63484018 AGTTAAATAGAAGCTCGTAAA
1 AGCTAAACAGAAACTCATAAG
*
63484039 AGCTGAACAGAAA
1 AGCTAAACAGAAA
63484052 GTAAAACACG
Statistics
Matches: 123, Mismatches: 35, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
20 1 0.01
21 121 0.98
22 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.19
Consensus pattern (21 bp):
AGCTAAACAGAAACTCATAAG
Found at i:63483925 original size:42 final size:42
Alignment explanation
Indices: 63483860--63484051 Score: 228
Period size: 42 Copynumber: 4.6 Consensus size: 42
63483850 ACATCGTTTC
* *
63483860 AGAAGCTCG-AA-AGCTGAACAGAAACTCATGAGAGCTAAAT
1 AGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTAAAT
* * * * *
63483900 AGAAGCTCATAAGAGCTAAACAGAAAC-CTATAAGGGTTGAAC
1 AGAAGCTCGTAAGAGCTGAACAGAAACTC-ATAAGAGTTAAAT
* *
63483942 AGAAGCTCGTAAGAGCTTAACAGAAACTCATAAGAGTTGAAT
1 AGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTAAAT
* * * *
63483984 AGAAGCTCGTAAGGGTTGAACAGAAACTCGTATGAGTTAAAT
1 AGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTAAAT
*
63484026 AGAAGCTCGTAAAAGCTGAACAGAAA
1 AGAAGCTCGTAAGAGCTGAACAGAAA
63484052 GTAAAACACG
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 8 0.06
41 3 0.02
42 116 0.91
43 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (42 bp):
AGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTAAAT
Found at i:63483945 original size:63 final size:63
Alignment explanation
Indices: 63483874--63484051 Score: 198
Period size: 63 Copynumber: 2.8 Consensus size: 63
63483864 GCTCGAAAGC
* *
63483874 TGAACAGAAACTCATGAGAGCTAAATAGAAGCTCATAAGAGCTAAACAGAAACCT-ATAAGGGT
1 TGAACAGAAACTCGT-AGAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAACCTCATAAGGGT
* * * * * * * *
63483937 TGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAGAGTTGAATAG-AAGCTCGTAAGGGT
1 TGAACAGAAACTCGT-AGAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAACCTCATAAGGGT
* * *
63484000 TGAACAGAAACTCGTATGAGTTAAATAGAAGCTCGTAAAAGCTGAACAGAAA
1 TGAACAGAAACTCGTA-GAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAA
63484052 GTAAAACACG
Statistics
Matches: 92, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
62 5 0.05
63 85 0.92
64 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (63 bp):
TGAACAGAAACTCGTAGAGCTAAATAGAAGCTCATAAGAGCTGAACAGAAACCTCATAAGGGT
Found at i:63486049 original size:15 final size:17
Alignment explanation
Indices: 63486007--63486051 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 17
63485997 GAAATAATAA
63486007 CTAATTAATTCAATTAAGT
1 CTAA-TAATT-AATTAAGT
63486026 CTAAT-ATTAATTAA-T
1 CTAATAATTAATTAAGT
63486041 -TAATAATTAAT
1 CTAATAATTAAT
63486052 ATGCTTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.16
15 7 0.28
16 6 0.24
17 3 0.12
18 1 0.04
19 4 0.16
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (17 bp):
CTAATAATTAATTAAGT
Found at i:63486304 original size:18 final size:17
Alignment explanation
Indices: 63486274--63486307 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
63486264 ATAACTATAG
63486274 TTTAAATTATAATTATT
1 TTTAAATTATAATTATT
63486291 TTTAAATGTATAATTAT
1 TTTAAAT-TATAATTAT
63486308 CACCACTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTAAATTATAATTATT
Found at i:63487991 original size:18 final size:20
Alignment explanation
Indices: 63487970--63488012 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
63487960 TTAAAATATT
*
63487970 ATAATAGAAAA-T-TTTTAA
1 ATAATAAAAAAGTATTTTAA
63487988 ATAATAAAAAAGTATTTTAA
1 ATAATAAAAAAGTATTTTAA
63488008 A-AATA
1 ATAATA
63488013 TTCAACATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 5 0.23
20 7 0.32
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (20 bp):
ATAATAAAAAAGTATTTTAA
Found at i:63490561 original size:76 final size:76
Alignment explanation
Indices: 63490435--63490590 Score: 267
Period size: 76 Copynumber: 2.1 Consensus size: 76
63490425 TTTACATTTT
*
63490435 TTAATATTTATAACACCTTACACTCGACTCGAAAGATGACCGGATGCATGATGTCACATCGACTA
1 TTAATATTTATAACACCTTACACTCGACTCGAAAGATGACCAGATGCATGATGTCACATCGACTA
63490500 CCAAACTAACC
66 CCAAACTAACC
* * * *
63490511 TTAATATTTATAACACCTTATACTCGACTCGAAAGCTGACTAGATGCATGATGTCACATCGTCTA
1 TTAATATTTATAACACCTTACACTCGACTCGAAAGATGACCAGATGCATGATGTCACATCGACTA
63490576 CCAAACTAACC
66 CCAAACTAACC
63490587 TTAA
1 TTAA
63490591 GTAAGTTGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (76 bp):
TTAATATTTATAACACCTTACACTCGACTCGAAAGATGACCAGATGCATGATGTCACATCGACTA
CCAAACTAACC
Found at i:63490896 original size:21 final size:21
Alignment explanation
Indices: 63490827--63490899 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
63490817 TGATATATAG
*
63490827 ACCTATGTTCT-AGTACCTTAT
1 ACCTATGTTCTGA-TACCTCAT
* *
63490848 ACCTATATTCTGATACCTCTT
1 ACCTATGTTCTGATACCTCAT
*** *
63490869 GTTTATGTTCTGATACCTCAA
1 ACCTATGTTCTGATACCTCAT
63490890 ACCTATGTTC
1 ACCTATGTTC
63490900 CCATACCTTG
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
21 38 0.97
22 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.42
Consensus pattern (21 bp):
ACCTATGTTCTGATACCTCAT
Found at i:63491558 original size:43 final size:43
Alignment explanation
Indices: 63491475--63491558 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
63491465 TTTCACATTA
*
63491475 ATAACATCTACATTAATAACAACATAAGATCATCAATTCATCT
1 ATAACATCTACATTAATAACAACATAAGATAATCAATTCATCT
* *
63491518 ATAACATCTAGATTACT-ACAACATCAAG-TAATCAACTTCAT
1 ATAACATCTACATTAATAACAACAT-AAGATAATCAA-TTCAT
63491559 GCATATTACC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 13 0.36
43 23 0.64
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (43 bp):
ATAACATCTACATTAATAACAACATAAGATAATCAATTCATCT
Found at i:63492716 original size:18 final size:19
Alignment explanation
Indices: 63492690--63492727 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
63492680 TATTTTGCCC
* *
63492690 AAACCAAAAA-CATTGTCA
1 AAACAAAAAATCAATGTCA
63492708 AAACAAAAAATCAATGTCA
1 AAACAAAAAATCAATGTCA
63492727 A
1 A
63492728 TAACTACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.61, C:0.18, G:0.05, T:0.16
Consensus pattern (19 bp):
AAACAAAAAATCAATGTCA
Found at i:63495132 original size:25 final size:24
Alignment explanation
Indices: 63495104--63495150 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
63495094 AGTGTCTTGA
63495104 TTAAAGGCTCTTTGCGAGCTTCCCG
1 TTAAAGGCTCTTTG-GAGCTTCCCG
*
63495129 TTAATGGCTCTTTGGAGCTTCC
1 TTAAAGGCTCTTTGGAGCTTCC
63495151 TGATATTCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.15, C:0.26, G:0.23, T:0.36
Consensus pattern (24 bp):
TTAAAGGCTCTTTGGAGCTTCCCG
Found at i:63495162 original size:24 final size:25
Alignment explanation
Indices: 63495110--63495162 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
63495100 TTGATTAAAG
* *
63495110 GCTCTTTGCGAGCTTCCCGTTAATG
1 GCTCTTTGCGAGCTTCCCGATAATC
* *
63495135 GCTCTTTG-GAGCTTCCTGATATTC
1 GCTCTTTGCGAGCTTCCCGATAATC
63495159 GCTC
1 GCTC
63495163 GCTTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.11, C:0.28, G:0.23, T:0.38
Consensus pattern (25 bp):
GCTCTTTGCGAGCTTCCCGATAATC
Found at i:63497272 original size:26 final size:26
Alignment explanation
Indices: 63497236--63497311 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
63497226 CCATGATTTA
* *
63497236 ATTATGATTAATTAATTATAATTAGT
1 ATTAAGATTAATTAATTATAATTAGC
*
63497262 ATTACGATTAATTAATTATAATTAGC
1 ATTAAGATTAATTAATTATAATTAGC
63497288 ATTAAGATTAATTAATTATAATTA
1 ATTAAGATTAATTAATTATAATTA
63497312 AAGTAAGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.46
Consensus pattern (26 bp):
ATTAAGATTAATTAATTATAATTAGC
Found at i:63499962 original size:51 final size:51
Alignment explanation
Indices: 63499894--63500180 Score: 312
Period size: 51 Copynumber: 5.6 Consensus size: 51
63499884 AGTGAAAGTG
* * *
63499894 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * ** *
63499944 TTCGATCACATGTGTAGTACTATGTGCAGGCTACTATGTGTGTCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * *
63499996 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * *
63500045 ATGGGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTGCCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * ** * *
63500096 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
*
63500148 ATGGTCACATGTGTAGTACTATGTGTAGGCTAC
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTAC
63500181 AATATGAACC
Statistics
Matches: 193, Mismatches: 38, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
49 3 0.02
50 39 0.20
51 148 0.77
52 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
Found at i:63500106 original size:101 final size:101
Alignment explanation
Indices: 63499898--63500180 Score: 365
Period size: 101 Copynumber: 2.8 Consensus size: 101
63499888 AAAGTGATGG
* * * * *
63499898 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGATCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAT-GGTCACATGTGTAGTA
* * * * *
63499963 CTATGTGCAGGCTACTATGTGTGTCGGATGGTAATGG
65 CTATGTGTAGGCTACTATGCGTGCCGGATAGTAATGA
*
63500000 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATGGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-AT-GGTCACATGTGTAGT
*
63500063 ACTATGTGTAGGCTACTATGCGTGCCGGATAGT-TTCGA
64 ACTATGTGTAGGCTACTATGCGTGCCGGATAGTAAT-GA
* * *
63500101 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT-ATGGTCACATGTGTAGTA
63500166 CTATGTGTAGGCTAC
65 CTATGTGTAGGCTAC
63500181 AATATGAACC
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
100 2 0.01
101 85 0.53
102 69 0.43
103 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTATGGTCACATGTGTAGTAC
TATGTGTAGGCTACTATGCGTGCCGGATAGTAATGA
Found at i:63500179 original size:152 final size:152
Alignment explanation
Indices: 63499903--63500180 Score: 475
Period size: 152 Copynumber: 1.8 Consensus size: 152
63499893 GATGGTCACG
63499903 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGATCACATGTGTAGTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGATCACATGTGTAGTACTATG
** * *
63499968 TGCAGGCTACTATGTGTGTCGGATGGTAATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACG
66 TGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTACTATGTGCAGGCTACTACG
63500033 TGTACCGGAATGATGGGTCGCA
131 TGTACCGGAATGATGGGTCGCA
* * * *
63500055 TGTGTAGTACTATGTGTAGGCTACTATGCGTGCCGGATAGTTTCGATCACGTGTGTAGTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGATCACATGTGTAGTACTATG
*
63500120 TGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTACTATGTGTAGGCTAC
66 TGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTACTATGTGCAGGCTAC
63500181 AATATGAACC
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
152 117 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (152 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGATCACATGTGTAGTACTATG
TGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTACTATGTGCAGGCTACTACG
TGTACCGGAATGATGGGTCGCA
Found at i:63506495 original size:17 final size:17
Alignment explanation
Indices: 63506473--63506506 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63506463 ACGATTCACA
63506473 ATAACCCAAACAACATC
1 ATAACCCAAACAACATC
63506490 ATAACCCAAACAACATC
1 ATAACCCAAACAACATC
63506507 TTTCTTCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.12
Consensus pattern (17 bp):
ATAACCCAAACAACATC
Found at i:63507453 original size:11 final size:11
Alignment explanation
Indices: 63507437--63507462 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63507427 CTGATCAAAG
63507437 CTTTGTTGATA
1 CTTTGTTGATA
63507448 CTTTGTTGATA
1 CTTTGTTGATA
63507459 CTTT
1 CTTT
63507463 TCAGTCAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (11 bp):
CTTTGTTGATA
Found at i:63508371 original size:5 final size:5
Alignment explanation
Indices: 63508363--63508389 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
63508353 TATAATTTTT
63508363 TTAAA TTAAA TTAAA TTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TT
63508390 TTAATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:63521084 original size:3 final size:3
Alignment explanation
Indices: 63521076--63521112 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
63521066 TTAAGTATGT
63521076 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
63521113 AACAAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:63521149 original size:4 final size:4
Alignment explanation
Indices: 63521140--63521164 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
63521130 AAAAGGAAAT
63521140 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
63521165 AAGAATAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:63522083 original size:37 final size:39
Alignment explanation
Indices: 63522019--63522131 Score: 122
Period size: 40 Copynumber: 2.9 Consensus size: 39
63522009 GTTAATTTAC
**
63522019 TACTTCGAATTAATTCGATGAGGCACTGGGTGCCAA-T-T
1 TACTTCGAATT-AGCCGATGAGGCACTGGGTGCCAATTAT
** * *
63522057 TACTTCGGTTTAGCCGATGAGACACTGGGTGTCAAATTAT
1 TACTTCGAATTAGCCGATGAGGCACTGGGTG-CCAATTAT
* *
63522097 TACTTCGAATTATCTGATGAGGCACTGGGTGCCAA
1 TACTTCGAATTAGCCGATGAGGCACTGGGTGCCAA
63522132 ACTGGTGTGT
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
37 17 0.28
38 12 0.20
39 4 0.07
40 27 0.45
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (39 bp):
TACTTCGAATTAGCCGATGAGGCACTGGGTGCCAATTAT
Found at i:63522116 original size:40 final size:40
Alignment explanation
Indices: 63521994--63522132 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 40
63521984 ACTTCGAGTC
* * * * *
63521994 GATGAGACATTGGATGTTAATTTACTACTTCGAATTAAT-T
1 GATGAGACACTGGGTGTCAAATTATTACTTCGAATT-ATCT
* * ** * *
63522034 CGATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGCC
1 -GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
63522072 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
1 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
* *
63522112 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGTCAAA
63522133 CTGGTGTGTT
Statistics
Matches: 75, Mismatches: 19, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
37 16 0.21
38 12 0.16
39 2 0.03
40 32 0.43
41 13 0.17
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
Found at i:63529058 original size:69 final size:69
Alignment explanation
Indices: 63528973--63529182 Score: 197
Period size: 69 Copynumber: 3.3 Consensus size: 69
63528963 TAAATTCATA
* *
63528973 TAAGAATTTGAGTAAATTATAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAA
1 TAAGAATTTTATTAAATTATAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAA
63529038 TTAT
66 TTAT
** * * *
63529042 TAAGAATTTTATTAAATTATA-TATTTTA-ATTAT-A----A-TATATTTA-ATAA-TA-ATT-A
1 TAAGAATTTTATTAAATTATAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAA
*
63529095 -TGT
66 TTAT
*
63529098 T---AATTTATATT---TTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTA
1 TAAGAATTT-TATTAAATTATAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTA
63529157 ATTAT
65 ATTAT
63529162 TAAGAATTTTATTAAATTATA
1 TAAGAATTTTATTAAATTATA
63529183 TATTTTAATT
Statistics
Matches: 105, Mismatches: 16, Indels: 40
0.65 0.10 0.25
Matches are distributed among these distances:
51 4 0.04
52 5 0.05
53 10 0.10
54 5 0.05
56 3 0.03
57 1 0.01
58 4 0.04
59 7 0.07
60 8 0.08
61 7 0.07
62 4 0.04
63 1 0.01
64 3 0.03
66 5 0.05
67 10 0.10
68 5 0.05
69 23 0.22
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (69 bp):
TAAGAATTTTATTAAATTATAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAA
TTAT
Found at i:63529065 original size:61 final size:61
Alignment explanation
Indices: 63528999--63529186 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
63528989 TTATAGTATC
63528999 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * ** * * * * *
63529060 ATATATTTTAATTAT-AATATATTTAATAATAATTATGTTAA-T-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TCAGTA-AATTAAT-ATAAGAATATTAATTATTAAGAATTTTATTA-AATT
63529119 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
63529180 ATATATT
1 ATATATT
63529187 TTAATTATAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
57 10 0.11
58 9 0.09
59 24 0.25
60 2 0.02
61 31 0.33
62 9 0.09
63 10 0.11
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:63529086 original size:15 final size:15
Alignment explanation
Indices: 63529051--63529212 Score: 58
Period size: 15 Copynumber: 10.9 Consensus size: 15
63529041 TTAAGAATTT
*
63529051 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63529065 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63529079 TATTTAATAATAAT-
1 TATTTAATTATAATA
63529093 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
63529107 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
* *
63529122 TATTATGATT-TCAGTA
1 TATT-TAATTAT-AATA
* *
63529138 -AATTAA-TATAAGA
1 TATTTAATTATAATA
*
63529151 -ATATTAATTATTAAGA
1 TAT-TTAATTA-TAATA
* *
63529167 -ATTTTATTAAATTATA
1 TATTTAATT--ATAATA
63529183 TATTTTAATTATAATA
1 TA-TTTAATTATAATA
*
63529199 TATTTAATAATAAT
1 TATTTAATTATAAT
63529213 TATGTTTAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 35
0.67 0.12 0.21
Matches are distributed among these distances:
12 3 0.03
13 17 0.15
14 18 0.16
15 41 0.37
16 23 0.21
17 3 0.03
18 6 0.05
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63529134 original size:120 final size:120
Alignment explanation
Indices: 63528993--63529218 Score: 452
Period size: 120 Copynumber: 1.9 Consensus size: 120
63528983 AGTAAATTAT
63528993 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
63529058 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
63529113 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
63529178 TTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TTATATATTTTAATTATAATATATTTAATAATAATTATGTT
63529219 TAAATATGAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 106 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:63529201 original size:16 final size:16
Alignment explanation
Indices: 63529180--63529221 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63529170 TTATTAAATT
*
63529180 ATATATTTTAATTATA
1 ATATATTTTAATAATA
63529196 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
63529211 AT-TATGTTTAA
1 ATATAT-TTTAA
63529222 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:63529457 original size:45 final size:44
Alignment explanation
Indices: 63529366--63529457 Score: 112
Period size: 45 Copynumber: 2.1 Consensus size: 44
63529356 ACCTCTATTC
* * *
63529366 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCAATA
*** *
63529410 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTAATCCAATA
63529455 CAT
1 CAT
63529458 CTCTAATCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.30
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCAATA
Found at i:63529461 original size:16 final size:16
Alignment explanation
Indices: 63529437--63529488 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
63529427 GATTTGCTAT
63529437 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
63529453 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
63529469 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63529485 TACA
1 TACA
63529489 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:63530112 original size:82 final size:82
Alignment explanation
Indices: 63530002--63530192 Score: 283
Period size: 82 Copynumber: 2.3 Consensus size: 82
63529992 GACTTTAAGT
* *
63530002 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGATC
1 CTAGCAGGCTATGTGCCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGATC
*
63530067 TGAATCAGGTTATAAAC
66 TGAATCAGGCTATAAAC
*
63530084 CTAGCAGGCTATGTGCCGATGATTTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGATC
1 CTAGCAGGCTATGTGCCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGATC
* **
63530149 TGAATCATGCTATAAGT
66 TGAATCAGGCTATAAAC
* * *
63530166 TTAGCAGGTTATGTGCCGTTGAATCTG
1 CTAGCAGGCTATGTGCCGATG-ATCTG
63530193 TTTAAATTAA
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 93 0.96
83 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (82 bp):
CTAGCAGGCTATGTGCCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTACGTGCCGGTGATC
TGAATCAGGCTATAAAC
Found at i:63530183 original size:41 final size:41
Alignment explanation
Indices: 63530002--63530155 Score: 281
Period size: 41 Copynumber: 3.8 Consensus size: 41
63529992 GACTTTAAGT
63530002 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
63530043 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
63530084 CTAGCAGGCTATGTGCCGATGATTTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
63530125 CTAGCAGGCTACGTGCCGGTGATCTGAATCA
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCA
63530156 TGCTATAAGT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 107 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:63537942 original size:35 final size:34
Alignment explanation
Indices: 63537894--63537960 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
63537884 CGTGGTTCTC
* *
63537894 TTTCTTTTTCTTCTTTCTCTT-TTTCTTTCTCAAA
1 TTTCTTTTGCTTCTCTCT-TTCTTTCTTTCTCAAA
*
63537928 TTTCGTTTTGCTTCTCTGTTTCTTTCTTTCTCA
1 TTTC-TTTTGCTTCTCTCTTTCTTTCTTTCTCA
63537961 TATCTATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 6 0.21
35 22 0.79
ACGTcount: A:0.06, C:0.24, G:0.04, T:0.66
Consensus pattern (34 bp):
TTTCTTTTGCTTCTCTCTTTCTTTCTTTCTCAAA
Found at i:63538005 original size:5 final size:5
Alignment explanation
Indices: 63537986--63538031 Score: 58
Period size: 5 Copynumber: 9.0 Consensus size: 5
63537976 TTGTTTTATA
*
63537986 AATAT -ATAGT AATAT AATAT AATAT ATTAAT AATAT AATAT AATAT
1 AATAT AATA-T AATAT AATAT AATAT AAT-AT AATAT AATAT AATAT
63538032 TAAAAACATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 3 0.08
5 26 0.72
6 7 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (5 bp):
AATAT
Found at i:63538019 original size:21 final size:20
Alignment explanation
Indices: 63537986--63538031 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
63537976 TTGTTTTATA
*
63537986 AATATATAGTAATATAATAT
1 AATATATAATAATATAATAT
63538006 AATATATTAATAATATAATAT
1 AATATA-TAATAATATAATAT
63538027 AATAT
1 AATAT
63538032 TAAAAACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AATATATAATAATATAATAT
Found at i:63538502 original size:35 final size:35
Alignment explanation
Indices: 63538456--63538526 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
63538446 TATTTACGGC
63538456 TCAGTTTATAATATCGAGGTCTCAATACCTCGTTT
1 TCAGTTTATAATATCGAGGTCTCAATACCTCGTTT
63538491 TCAGTTTATAATATCGAGGTCTCAATACCTCGTTT
1 TCAGTTTATAATATCGAGGTCTCAATACCTCGTTT
63538526 T
1 T
63538527 TGACCCAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (35 bp):
TCAGTTTATAATATCGAGGTCTCAATACCTCGTTT
Found at i:63540489 original size:17 final size:15
Alignment explanation
Indices: 63540436--63540489 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
63540426 CTTTTTCCTT
63540436 TTTTGAAAACACGAAAA
1 TTTT-AAAACAC-AAAA
*
63540453 TTTTAAAATACAAGAA
1 TTTTAAAACACAA-AA
63540469 TTTTAGAAACACAAAA
1 TTTTA-AAACACAAAA
63540485 CTTTT
1 -TTTT
63540490 TTTAAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 2 0.06
16 15 0.47
17 15 0.47
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.31
Consensus pattern (15 bp):
TTTTAAAACACAAAA
Found at i:63540566 original size:20 final size:21
Alignment explanation
Indices: 63540531--63540571 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
63540521 GATTTTTTAT
63540531 TTTTATTTTTGAAAACACGAA
1 TTTTATTTTTGAAAACACGAA
*
63540552 TTTTCTTTTTG-AAACACGAA
1 TTTTATTTTTGAAAACACGAA
63540572 AATTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTTATTTTTGAAAACACGAA
Found at i:63540584 original size:37 final size:37
Alignment explanation
Indices: 63540535--63540614 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
63540525 TTTTATTTTT
*
63540535 ATTTTTGAAAACACG-AATTTTCTTTTTGAAACACGA-AA
1 ATTTTTGAAAACA-GAAAATTTCTTTTTGAAA-AC-ATAA
*
63540573 ATTTTT-AAAACAGAAAATTTGTTTTTGAAAACATAA
1 ATTTTTGAAAACAGAAAATTTCTTTTTGAAAACATAA
63540609 ATTTTT
1 ATTTTT
63540615 TTGATAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
35 1 0.03
36 11 0.29
37 20 0.53
38 6 0.16
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (37 bp):
ATTTTTGAAAACAGAAAATTTCTTTTTGAAAACATAA
Found at i:63540588 original size:16 final size:17
Alignment explanation
Indices: 63540557--63540592 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
63540547 ACGAATTTTC
*
63540557 TTTTTGAAACACGAAAA
1 TTTTTAAAACACGAAAA
63540574 TTTTTAAAACA-GAAAA
1 TTTTTAAAACACGAAAA
63540590 TTT
1 TTT
63540593 GTTTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:63540610 original size:20 final size:19
Alignment explanation
Indices: 63540574--63540616 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
63540564 AACACGAAAA
63540574 TTTTTAAAACAGAAAATTT
1 TTTTTAAAACAGAAAATTT
*
63540593 GTTTTTGAAAACA-TAAATTT
1 -TTTTT-AAAACAGAAAATTT
63540613 TTTT
1 TTTT
63540617 GATAAAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTTTAAAACAGAAAATTT
Found at i:63540751 original size:23 final size:23
Alignment explanation
Indices: 63540725--63540819 Score: 122
Period size: 23 Copynumber: 4.2 Consensus size: 23
63540715 TTTTTGTTTT
63540725 TTTTTCATTTTAAAACACGAAAA
1 TTTTTCATTTTAAAACACGAAAA
* *
63540748 TTTTTCATTTGAAAACATGAAAA
1 TTTTTCATTTTAAAACACGAAAA
* *
63540771 TTTTTCATTTTAAAACGCG-GAA
1 TTTTTCATTTTAAAACACGAAAA
*
63540793 TTTTT-TTTTTAAAACACGAAAA
1 TTTTTCATTTTAAAACACGAAAA
*
63540815 CTTTT
1 TTTTT
63540820 GAAAACGCGA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
21 11 0.18
22 13 0.21
23 37 0.61
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (23 bp):
TTTTTCATTTTAAAACACGAAAA
Found at i:63540824 original size:18 final size:18
Alignment explanation
Indices: 63540798--63540832 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63540788 CGGAATTTTT
*
63540798 TTTTTAAAACACGAAAAC
1 TTTTGAAAACACGAAAAC
*
63540816 TTTTGAAAACGCGAAAA
1 TTTTGAAAACACGAAAA
63540833 GTCAAAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAC
Found at i:63541534 original size:24 final size:23
Alignment explanation
Indices: 63541495--63541583 Score: 90
Period size: 24 Copynumber: 3.7 Consensus size: 23
63541485 AGCCTGCTGT
* *
63541495 TTTTTTATTTTTTTTTCTTTTTC
1 TTTTTTCTTCTTTTTTCTTTTTC
* *
63541518 TCTTTTTCTTCTATTTTTTCTTTCTA
1 T-TTTTTCTTC--TTTTTTCTTTTTC
63541544 TTTTTTCTAT-TTTTTTCCTTTTTC
1 TTTTTTCT-TCTTTTTT-CTTTTTC
63541568 TTTTTTCTTCTTTTTT
1 TTTTTTCTTCTTTTTT
63541584 AGGCCGAACC
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
23 8 0.15
24 26 0.48
25 7 0.13
26 13 0.24
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTCTTCTTTTTTCTTTTTC
Found at i:63541536 original size:13 final size:13
Alignment explanation
Indices: 63541505--63541551 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
63541495 TTTTTTATTT
* *
63541505 TTTTTTCTTTTTC
1 TTTTTTCTTTCTA
63541518 TCTTTTTC-TTCTA
1 T-TTTTTCTTTCTA
63541531 TTTTTTCTTTCTA
1 TTTTTTCTTTCTA
63541544 TTTTTTCT
1 TTTTTTCT
63541552 ATTTTTTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 6 0.20
13 18 0.60
14 6 0.20
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTCTTTCTA
Found at i:63541571 original size:22 final size:21
Alignment explanation
Indices: 63541512--63541571 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 21
63541502 TTTTTTTTTC
63541512 TTTTTCTCTTTTTC--TTCTAT
1 TTTTTC-CTTTTTCTTTTCTAT
*
63541532 TTTTT-CTTTCTATTTTTTCTATT
1 TTTTTCCTTT-T-TCTTTTCTA-T
63541555 TTTTTCCTTTTTCTTTT
1 TTTTTCCTTTTTCTTTT
63541572 TTCTTCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 6 0.19
22 10 0.31
23 7 0.22
24 4 0.12
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTCCTTTTTCTTTTCTAT
Found at i:63541581 original size:9 final size:9
Alignment explanation
Indices: 63541503--63541582 Score: 52
Period size: 9 Copynumber: 9.6 Consensus size: 9
63541493 GTTTTTTTAT
*
63541503 TTTTTTTTC
1 TTTTTCTTC
63541512 TTTTTC-TC
1 TTTTTCTTC
63541520 TTTTTCTTC
1 TTTTTCTTC
63541529 TATTTT-TTC
1 T-TTTTCTTC
63541538 --TTTCTAT-
1 TTTTTCT-TC
63541545 TTTTTCTAT-
1 TTTTTCT-TC
*
63541554 TTTTT-TCC
1 TTTTTCTTC
63541562 TTTTTC-T-
1 TTTTTCTTC
63541569 TTTTTCTTC
1 TTTTTCTTC
63541578 TTTTT
1 TTTTT
63541583 TAGGCCGAAC
Statistics
Matches: 58, Mismatches: 3, Indels: 20
0.72 0.04 0.25
Matches are distributed among these distances:
6 3 0.05
7 7 0.12
8 16 0.28
9 28 0.48
10 4 0.07
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:63541713 original size:15 final size:15
Alignment explanation
Indices: 63541693--63541725 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63541683 CTCTTCTTTC
63541693 TTTTTGGTTGCTATT
1 TTTTTGGTTGCTATT
*
63541708 TTTTTGGTTGCTGTT
1 TTTTTGGTTGCTATT
63541723 TTT
1 TTT
63541726 GTTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.06, G:0.21, T:0.70
Consensus pattern (15 bp):
TTTTTGGTTGCTATT
Found at i:63542188 original size:30 final size:28
Alignment explanation
Indices: 63542154--63542251 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 28
63542144 TAATTTCTTG
63542154 AAAGTTTAGGGGTTAAAGTGAAATTTTGAA
1 AAAGTTTAGGGGTTAAA-TGAAATTTT-AA
* *
63542184 AAAGTTTAAGGGTTGAAATGTAATTTTAGA
1 AAAGTTTAGGGGTT-AAATGAAATTTTA-A
* *
63542214 AAAGTTT-GTGGTCAAAATGTAAATTTTAA
1 AAAGTTTAGGGGT-TAAATG-AAATTTTAA
63542243 AAAGGTTTA
1 AAA-GTTTA
63542252 TGGTCAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
29 13 0.23
30 40 0.71
31 3 0.05
ACGTcount: A:0.41, C:0.01, G:0.22, T:0.36
Consensus pattern (28 bp):
AAAGTTTAGGGGTTAAATGAAATTTTAA
Found at i:63542204 original size:60 final size:60
Alignment explanation
Indices: 63542139--63542292 Score: 145
Period size: 60 Copynumber: 2.6 Consensus size: 60
63542129 ATATGGGCCA
* * *
63542139 AAATGTAATTTCTTG-AAAGTTTAGGGGTTAAAGTG-AAATTTTGAAAAA-GTTTAAGGGTTG
1 AAATGTAATTT-TAGAAAAGTTT-GGGGTCAAAATGTAAATTTT-AAAAAGGTTTAAGGGTTG
* * **
63542199 AAATGTAATTTTAGAAAAGTTTGTGGTCAAAATGTAAATTTTAAAAAGGTTT-ATGGTCA
1 AAATGTAATTTTAGAAAAGTTTGGGGTCAAAATGTAAATTTTAAAAAGGTTTAAGGGTTG
* * **
63542258 AAATGTAAATTTCGAAAAGTACAGGGGTCAAAATG
1 AAATGTAATTTTAGAAAAGT-TTGGGGTCAAAATG
63542293 CATTTTTTTA
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
59 38 0.49
60 40 0.51
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (60 bp):
AAATGTAATTTTAGAAAAGTTTGGGGTCAAAATGTAAATTTTAAAAAGGTTTAAGGGTTG
Found at i:63542245 original size:29 final size:31
Alignment explanation
Indices: 63542199--63542269 Score: 112
Period size: 30 Copynumber: 2.4 Consensus size: 31
63542189 TTAAGGGTTG
*
63542199 AAATGT-AATTTTAGAAAA-GTTTGTGGTCA
1 AAATGTAAATTTTAGAAAAGGTTTATGGTCA
63542228 AAATGTAAATTTTA-AAAAGGTTTATGGTCA
1 AAATGTAAATTTTAGAAAAGGTTTATGGTCA
63542258 AAATGTAAATTT
1 AAATGTAAATTT
63542270 CGAAAAGTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 10 0.26
30 29 0.74
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (31 bp):
AAATGTAAATTTTAGAAAAGGTTTATGGTCA
Found at i:63542256 original size:30 final size:30
Alignment explanation
Indices: 63542199--63542277 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
63542189 TTAAGGGTTG
*
63542199 AAATGT-AATTTTAGAAAAGTTTGTGGTCA
1 AAATGTAAATTTTAGAAAAGTTTATGGTCA
63542228 AAATGTAAATTTTA-AAAAGGTTTATGGTCA
1 AAATGTAAATTTTAGAAAA-GTTTATGGTCA
*
63542258 AAATGTAAA-TTTCGAAAAGT
1 AAATGTAAATTTTAGAAAAGT
63542278 ACAGGGGTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
29 15 0.33
30 30 0.67
ACGTcount: A:0.43, C:0.04, G:0.18, T:0.35
Consensus pattern (30 bp):
AAATGTAAATTTTAGAAAAGTTTATGGTCA
Found at i:63542593 original size:76 final size:77
Alignment explanation
Indices: 63542484--63544779 Score: 2022
Period size: 76 Copynumber: 29.7 Consensus size: 77
63542474 GCGACTCAAA
* *
63542484 GCTCAACTCACCTCTCGAAATATGAGTTGA-TTTTTG-AAAAACAGAAATTTAAAAGAAATACCT
1 GCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAACAGAAATTTAAAA-AAATACCT
*
63542547 CAGCATGACCCGAG
64 CAGCGTGACCCGAG
* * * *
63542561 ACTCAACTCACCTCTGTATTATGAGTTGA-TTTTTG-AAAAATATAAATTGAAAAGAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATTTAAAA-AAATACCTC
* *
63542624 GGCCTACGACCCGAG
65 AGCGT--GACCCGAG
* * * * *
63542639 GATCAACTCACCCCTCGCAGTATGAGTTGA-TTTTTG-AAAAATAGAAATTTAAAAGAAATACCT
1 GCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAAACAGAAATTTAAAA-AAATACCT
* ** ** *
63542702 CGGTATGGTCCGAA
64 CAGCGTGACCCGAG
* * * *
63542716 GATCAACTCACCTCTCGCAATATGAGTTGAGTTTTTTTTATGAAAAACAGAAATTTAAAATATAA
1 GCTCAACTCACCTCT-GTATTATGAGTTGA--TTTTTTGA--AAAAACAGAAA-TT----TA-AA
*
63542781 TAATAATACCTCAGCGTAACCCGAG
55 -AA-AATACCTCAGCGTGACCCGAG
* *
63542806 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AAAAATACC
1 GCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTG--AAAAAACAGAAATTTAAAAAAATACC
63542867 TCAGCGTGACCCGAG
63 TCAGCGTGACCCGAG
** *
63542882 GCTCAACTCACCTCTCGTATTATGAGTTGA--TTTAAAAAAAGACATAAA-TT--AAAAATACCT
1 GCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAA-ACAGAAATTTAAAAAAATACCT
63542942 CAGCGTGACCCGAG
64 CAGCGTGACCCGAG
*** *
63542956 GCTCAACTCACCTCTGTATTATGAGTTGA-TTTAAAAAAAAGACATAAA-TT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAA-ACAGAAATTTAAAAAAATACCTC
63543017 AGCGTGACCCGAG
65 AGCGTGACCCGAG
63543030 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTT-AAAAAAGCAGAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
*
63543092 AGCGTGACTCGAG
65 AGCGTGACCCGAG
63543105 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTTGAAAAAAGCAGAAATTT--AAAAATACC
1 GCTCAACTCACCTCTGTATTATGAGTTGA--TTTTTTGAAAAAA-CAGAAATTTAAAAAAATACC
*
63543168 TCAGTGTGACCCGAG
63 TCAGCGTGACCCGAG
** ** **** * * *** * *
63543183 GCTCAACTCACCTCTGTATTATGAGTTGATACCTCAGTGTGACCCG-AGGCT---CAACTCACCT
1 GCTCAACTCACCTCTGTATTATGAGTTGAT-TTTTTGAAAAAACAGAAATTTAAAAAAAT-ACCT
* ** * *
63543244 CTGTATTA--TGA-
64 CAGCGTGACCCGAG
** ** * * ** ** ** * * *** *** * **** **
63543255 G-TTGA-T--TTTTTG-A-AAAAAGCAGA-AATTTAAAAATACCTCAGCGTGACCCGA-GGCTCA
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATTTAAAAAAATACCTCA
* * *
63543312 AC-TCACCTCTGTAT
66 GCGTGACC-C-G-AG
** * ** * ** * * ** ** ** ** * ** * ****
63543326 TATGAGTTGAGTTTTTGAAAAAACAG-AAATTAAATT--AAAAA-A-ATACCTCAGCGTA-ACC-
1 GCTCAACTCA-CCTCTGTATTATGAGTTGATT-TTTTGAAAAAACAGAAATTTAAAAAAATACCT
* *
63543384 C-GAG-G-CTC-A-
64 CAGCGTGACCCGAG
* * ** * * * ****
63543393 ACTCACCTC-TGTAT-TATGAGTTGA-TT-TTTTGAAAAAAAAAGCAGAAATTTAAAAAAAAATA
1 GCTCAACTCACCTCTGTATTA--TGAGTTGATTTTTTGAAAAAA-CAGAAATTT--AAAAAAATA
63543454 CCTCAGCGTGACCCGAG
61 CCTCAGCGTGACCCGAG
*
63543471 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCATAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
63543534 AGCGTGACCCGAG
65 AGCGTGACCCGAG
*
63543547 ACTCAACTCACCTCTGTATTATGAGTTGATTTTTT-AAAAAAGCAGAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
63543609 AGCGTGACCCGAG
65 AGCGTGACCCGAG
63543622 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTTTGAAAAAAGCAGAAATTT--AAAAATAC
1 GCTCAACTCACCTCTGTATTATGAGTTGA---TTTTTTGAAAAAA-CAGAAATTTAAAAAAATAC
*
63543685 CTCAGTGTGACCCGAG
62 CTCAGCGTGACCCGAG
63543701 GCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAAAGCAGAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
63543763 AGCGTGACCCGAG
65 AGCGTGACCCGAG
*
63543776 GCTCAACTCACCTCTGTATTATGAGTTGAGTTTTTGAAAAAACAGAAATTAAATTAAAAAAATAC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAA-T---TTAAAAAAATAC
*
63543841 CTCAGCGTAACCCGAG
62 CTCAGCGTGACCCGAG
63543857 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAAGCAGAAATTTAAAAAAAATACC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAA-CAGAAATTT-AAAAAAATACC
* *
63543922 TTAGCATGACCCGAG
63 TCAGCGTGACCCGAG
*
63543937 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTAGAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
*
63544000 AGCGTGACCCGAT
65 AGCGTGACCCGAG
*
63544013 GCTTAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATTAAATTAAAAAAATAC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAA-T---TTAAAAAAATAC
63544078 CTCAGCGTGACCCGAG
62 CTCAGCGTGACCCGAG
* *
63544094 GCTCAACTCACCTCTGTATTATGAGTTG-CTTTTTGAAAAAATAGAAATTTAAAAAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATTT-AAAAAAATACCTC
63544158 AGCGTGACCCGAG
65 AGCGTGACCCGAG
63544171 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCAGAAATTT--AAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
63544234 AGCGTGACCCGAG
65 AGCGTGACCCGAG
* *
63544247 GCTCAACTCACCTCTGTATTATAAGTTGATTTTTTGAAAAAACAGAAATTAAATTAAAAAATACC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATT---TAAAAAAATACC
*
63544312 TCAGCGTAACCCGAG
63 TCAGCGTGACCCGAG
*
63544327 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCATAAATTTAAAAAAAAAATAC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTT---AAAAAAATAC
63544392 CTCAGCGTGACCCGAG
62 CTCAGCGTGACCCGAG
* *
63544408 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTAGAAATTT--AAAAATACTTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CAGAAATTTAAAAAAATACCTC
63544471 AGCGTGACCCGAG
65 AGCGTGACCCGAG
63544484 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACAGAAATTAAATTAAAAAAATA
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAACAGAAA-T---TTAAAAAAATA
* *
63544549 CCTCAACGTGACCAGAG
61 CCTCAGCGTGACCCGAG
*
63544566 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAATAGAAATTTAAAAAAAATACCT
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAACAGAAATTT-AAAAAAATACCT
63544631 CAGCGTGACCCGAG
64 CAGCGTGACCCGAG
63544645 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACAGAAA-TTAAAAAAATACCTC
1 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAACAGAAATTTAAAAAAATACCTC
63544709 AGCGTGACCCGAG
65 AGCGTGACCCGAG
*
63544722 GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTGAAAAAAACAGAATTTTAAAAA
1 GCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTTG-AAAAAACAGAAATTTAAAAA
63544780 TATTTCTTGA
Statistics
Matches: 1903, Mismatches: 204, Indels: 222
0.82 0.09 0.10
Matches are distributed among these distances:
64 5 0.00
65 10 0.01
66 14 0.01
67 4 0.00
68 6 0.00
69 4 0.00
70 2 0.00
71 5 0.00
72 6 0.00
73 24 0.01
74 135 0.07
75 238 0.13
76 370 0.19
77 182 0.10
78 146 0.08
79 231 0.12
80 169 0.09
81 191 0.10
82 76 0.04
83 16 0.01
84 2 0.00
85 1 0.00
87 16 0.01
88 2 0.00
89 4 0.00
90 44 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (77 bp):
GCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAACAGAAATTTAAAAAAATACCTCA
GCGTGACCCGAG
Found at i:63542677 original size:79 final size:77
Alignment explanation
Indices: 63542486--63543212 Score: 404
Period size: 74 Copynumber: 9.4 Consensus size: 77
63542476 GACTCAAAGC
* * *
63542486 TCAACTCACCTCTCGAAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATACCTCGGC
63542551 -ATGACCCGAGA
66 TATGACCCGAGA
* * * *
63542562 CTCAACTCACCTCT-GTATTATGAGTTGATTTTTGAAAAATATAAATTGAAAAGAAATACCTCGG
1 -TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATACCTCGG
*
63542626 CCTACGACCCGAGGA
65 -CTATGACCCGA-GA
* *
63542641 TCAACTCACCCCTCGCAGTATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATACCTCGG-
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATACCTCGGC
**
63542705 TATGGTCCGAAGA
66 TATGACCCG-AGA
* *
63542718 TCAACTCACCTCTCGCAATATGAGTTGAGTTTTTTTTATGAAAAACAGAAATTTAAAATATAATA
1 TCAACTCACCTCTCGCAATATGAGTTGA-----TTTT-TGAAAAATAGAAATTT---A-A-AA-G
* *
63542783 ATAATACCTCAGCGTA--ACCCGAGGC
54 A-AATACCTCGGC-TATGACCCGA-GA
*
63542808 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAACAGAAA-TT--AA-AAATACCTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AAAAATAGAAATTTAAAAGAAATACCTC
* * *
63542869 AGC-GTGACCCGAGGC
63 GGCTATGACCCGA-GA
* * * * * *
63542884 TCAACTCACCTCTCGTATTATGAGTTGA--TTT-AAAAAAAGACA--TAAATTAAAAATACCTCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAA--AGAAATACCTCG
* *
63542944 GC-GTGACCCGAGGC
64 GCTATGACCCGA-GA
* * * * * * *
63542958 TCAACTCACCTCT-GTATTATGAGTTGA--TTTAAAAAAAAGACA--TAAATTAAAAATACCTCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAA--AGAAATACCTCG
* *
63543018 GC-GTGACCCGAGGC
64 GCTATGACCCGA-GA
* * * * *
63543032 TCAACTCACCTCT-GTATTATGAGTTGATTTTTTAAAAAAGCAGAAATTT--AA-AAATACCTCA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA-TAGAAATTTAAAAGAAATACCTCG
* * *
63543093 GC-GTGACTCGAGGC
64 GCTATGACCCGA-GA
* * *
63543107 TCAACTCACCTCT-GTATTATGAGTTGATTTTTTTTGAAAAAAGCAGAAATTT--AA-AAATACC
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTTG-AAAAA-TAGAAATTTAAAAGAAATACC
* * *
63543168 TCAG-TGTGACCCGAGGC
61 TCGGCTATGACCCGA-GA
* *
63543185 TCAACTCACCTCT-GTATTATGAGTTGAT
1 TCAACTCACCTCTCGCAATATGAGTTGAT
63543213 ACCTCAGTGT
Statistics
Matches: 575, Mismatches: 33, Indels: 86
0.83 0.05 0.12
Matches are distributed among these distances:
69 1 0.00
70 9 0.02
71 1 0.00
73 18 0.03
74 110 0.19
75 51 0.09
76 91 0.16
77 64 0.11
78 92 0.16
79 50 0.09
80 1 0.00
82 4 0.01
83 15 0.03
84 2 0.00
85 4 0.01
86 3 0.01
87 12 0.02
88 2 0.00
89 2 0.00
90 41 0.07
92 2 0.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (77 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAAAGAAATACCTCGGC
TATGACCCGAGA
Found at i:63543219 original size:48 final size:48
Alignment explanation
Indices: 63543163--63543260 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
63543153 AAATTTAAAA
63543163 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
1 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
63543211 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
1 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
63543259 AT
1 AT
63543261 TTTTTGAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
Found at i:63543313 original size:124 final size:125
Alignment explanation
Indices: 63543085--63543335 Score: 459
Period size: 124 Copynumber: 2.0 Consensus size: 125
63543075 AAATTTAAAA
*
63543085 ATACCTCAGCGTGACTCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTTGAAAAAAG
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTTTGAAAAAAG
*
63543150 CAGAAATTTAAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
65 CAGAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
*
63543211 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTTGAAAAAAGC
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTGAAAAAAGC
63543275 AGAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
66 AGAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
63543335 A
1 A
63543336 GTTTTTGAAA
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
124 75 0.61
126 47 0.39
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (125 bp):
ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTGAAAAAAGC
AGAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
Found at i:63543387 original size:81 final size:79
Alignment explanation
Indices: 63543211--63544779 Score: 2364
Period size: 76 Copynumber: 20.0 Consensus size: 79
63543201 TTATGAGTTG
*
63543211 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543276 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
*
63543287 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTTTTGAAAAAA-CA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543351 GAAATTAAATTAAAAAA
66 GAAATT---TTAAAAAA
*
63543368 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAAAA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG---AAAAAA
*
63543433 GCAGAAATTTAAAAAAAA
63 GCAGAAATTT-TAAAAAA
63543451 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63543516 TAAA-TTT--AAAA
66 GAAATTTTAAAAAA
*
63543527 ATACCTCAGCGTGACCCGAGACTCAACTCACCTCTGTATTATGAGTTGATTTTTT-AAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543591 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
63543602 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTTTGAAAAAA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA---TTTTTTGAAAAAA
63543667 GCAGAAA-TTT--AAAA
63 GCAGAAATTTTAAAAAA
*
63543681 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543745 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
*
63543756 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTTTTGAAAAAA-CA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543820 GAAATTAAATTAAAAAA
66 GAAATT---TTAAAAAA
*
63543837 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAAGC
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAAGC
*
63543902 AGAAATTTAAAAAAA
65 AGAAATTTTAAAAAA
* * *
63543917 ATACCTTAGCATGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63543982 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
* *
63543993 ATACCTCAGCGTGACCCGATGCTTAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAA-CA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544057 GAAATTAAATTAAAAAA
66 GAAATT---TTAAAAAA
* *
63544074 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG-CTTTTTGAAAAAA-TA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63544137 GAAATTTAAAAAAA
66 GAAATTTTAAAAAA
63544151 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544216 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
*
63544227 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATAAGTTGATTTTTTGAAAAAA-CA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544291 GAAATTAAATT-AAAAA
66 GAAATT---TTAAAAAA
*
63544307 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
* *
63544372 TAAATTTAAAAAAAAA
66 GAAATTT--TAAAAAA
*
63544388 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544453 GAAA-TTT--AAAA
66 GAAATTTTAAAAAA
* *
63544464 ATACTTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544529 GAAATTAAATTAAAAAA
66 GAAATT---TTAAAAAA
* * **
63544546 ATACCTCAACGTGACCAGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAATA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63544611 GAAATTTAAAAAAA
66 GAAATTTTAAAAAA
*
63544625 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
63544690 GAAA--TTAAAAAA
66 GAAATTTTAAAAAA
*
63544702 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTTGAAAAAAAC
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTTGAAAAAAGC
63544767 AG-AATTTTAAAAA
65 AGAAATTTTAAAAA
63544780 TATTTCTTGA
Statistics
Matches: 1388, Mismatches: 55, Indels: 97
0.90 0.04 0.06
Matches are distributed among these distances:
75 164 0.12
76 331 0.24
77 114 0.08
78 40 0.03
79 175 0.13
80 159 0.11
81 244 0.18
82 78 0.06
83 69 0.05
84 6 0.00
85 8 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (79 bp):
ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
GAAATTTTAAAAAA
Found at i:63544030 original size:237 final size:236
Alignment explanation
Indices: 63543211--63544770 Score: 2653
Period size: 237 Copynumber: 6.6 Consensus size: 236
63543201 TTATGAGTTG
*
63543211 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63543276 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
63543341 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
131 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
63543406 TTATGAGTTGATTTTTTGAAAAAAAAAGCAGAAATTTAAAAAAAA
196 TTATGAGTTGATTTTTTG---AAAAAAGCAGAAATTT-AAAAAAA
63543451 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
* *
63543516 TAAATTTAAAAATACCTCAGCGTGACCCGAGACTCAACTCACCTCTGTATTATGAGTTGATTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
*
63543581 T-AAAAAAGCAGAAA-T---TT--AAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGT
131 TGAAAAAA-CAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGT
63543639 ATTATGAGTTGATTTTTTTTTGAAAAAAGCAGAAATTT---AAAA
195 ATTATGAGTTGA---TTTTTTGAAAAAAGCAGAAATTTAAAAAAA
*
63543681 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63543745 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
63543810 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
131 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
63543875 TTATGAGTTGATTTTTTGAAAAAAAGCAGAAATTTAAAAAAA
196 TTATGAGTTGATTTTTTG-AAAAAAGCAGAAATTTAAAAAAA
* * *
63543917 ATACCTTAGCATGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
* *
63543982 GAAATTTAAAAATACCTCAGCGTGACCCGATGCTTAACTCACCTCTGTATTATGAGTTGATTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
*
63544047 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTA
131 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
* *
63544112 TTATGAGTTG-CTTTTTGAAAAAA-TAGAAATTTAAAAAAA
196 TTATGAGTTGATTTTTTGAAAAAAGCAGAAATTTAAAAAAA
63544151 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63544216 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATAAGTTGATTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
63544281 TGAAAAAACAGAAATTAAATT-AAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
131 TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
*
63544345 TTATGAGTTGATTTTTTGAAAAAAGCATAAATTTAAAAAAAAA
196 TTATGAGTTGATTTTTTGAAAAAAGCAGAAATTT--AAAAAAA
*
63544388 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGTA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63544453 GAAATTTAAAAATACTTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
66 GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
* * *
63544518 TGAAAAAAACAGAAATTAAATTAAAAAAATACCTCAACGTGACCAGAGGCTCAACTCACCTCTGT
131 TG-AAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGT
**
63544583 ATTATGAGTTGATTTTTTGAAAAAAATAGAAATTTAAAAAAA
195 ATTATGAGTTGATTTTTTGAAAAAAGCAGAAATTTAAAAAAA
*
63544625 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
*
63544690 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
66 GAAATT-TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTT
63544755 TTTGAAAAAAACAGAA
129 TTTG-AAAAAACAGAA
63544771 TTTTAAAAAT
Statistics
Matches: 1253, Mismatches: 43, Indels: 49
0.93 0.03 0.04
Matches are distributed among these distances:
229 84 0.07
230 59 0.05
232 7 0.01
233 70 0.06
234 240 0.19
235 65 0.05
236 58 0.05
237 369 0.29
238 71 0.06
239 97 0.08
240 133 0.11
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (236 bp):
ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
GAAATTTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTT
TGAAAAAACAGAAATTAAATTAAAAAAATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTA
TTATGAGTTGATTTTTTGAAAAAAGCAGAAATTTAAAAAAA
Found at i:63544779 original size:156 final size:155
Alignment explanation
Indices: 63543211--63544779 Score: 2289
Period size: 156 Copynumber: 10.0 Consensus size: 155
63543201 TTATGAGTTG
* *
63543211 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
* *
63543276 GAAATT-TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTT
66 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
63543340 TTG-AAAAAACAGAAATTAAATTAAAAAA
131 TTGAAAAAAACAGAAATT---TT-AAAAA
*
63543368 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAAAA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTG--AAAAAAA
63543433 GCAGAAATTTAAAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
64 -CAGAAA-TT--AAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
* *
63543498 GATTTTTTGAAAAAAGCATAAA-TTT-AAAA
125 GATTTTTTGAAAAAAACAGAAATTTTAAAAA
* *
63543527 ATACCTCAGCGTGACCCGAGACTCAACTCACCTCTGTATTATGAGTTGATTTTTT-AAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
*
63543591 GAAATT-TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
66 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA---T
*
63543655 TTTTTGAAAAAAGCAGAAA-TTT-AAAA
128 TTTTTGAAAAAAACAGAAATTTTAAAAA
* *
63543681 ATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
* *
63543745 GAAATT-TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAGTTT
66 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
63543809 TTG-AAAAAACAGAAATTAAATTAAAAAA
131 TTGAAAAAAACAGAAATT---TT-AAAAA
*
63543837 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAAGC
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAA-C
* *
63543902 AGAAATTTAAAAAAAATACCTTAGCATGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAT
65 AGAAA-TT-AAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGAT
**
63543967 TTTTTGAAAAAAGTAGAAA-TTT-AAAA
128 TTTTTGAAAAAAACAGAAATTTTAAAAA
* *
63543993 ATACCTCAGCGTGACCCGATGCTTAACTCACCTCTGTATTATGAGTTGATTTTTTG-AAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
63544057 GAAATTAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
66 G-----AAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
* * *
63544122 -CTTTTTG-AAAAAATAGAAATTTAAAAAAA
126 ATTTTTTGAAAAAAACAGAAATTT-TAAAAA
*
63544151 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
* *
63544216 GAAATT-TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATAAGTTGATTTT
66 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
63544280 TTG-AAAAAACAGAAATTAAATTAAAAA
131 TTGAAAAAAACAGAAATT---TTAAAAA
* *
63544307 ATACCTCAGCGTAACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAGCA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
*
63544372 TAAATTTAAAAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA
66 GAAA-TT---AAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA
**
63544437 TTTTTTGAAAAAAGTAGAAA-TTT-AAAA
127 TTTTTTGAAAAAAACAGAAATTTTAAAAA
*
63544464 ATACTTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
* *
63544529 GAAATTAAATTAAAAAAATACCTCAACGTGACCAGAGGCTCAACTCACCTCTGTATTATGAGTTG
66 G-----AAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
* *
63544594 ATTTTTTGAAAAAAATAGAAATTTAAAAAAA
126 ATTTTTTGAAAAAAACAGAAATTT-TAAAAA
63544625 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
1 ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
63544690 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
66 GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTT
63544755 TTTGAAAAAAACAG-AATTTTAAAAA
130 TTTGAAAAAAACAGAAATTTTAAAAA
63544780 TATTTCTTGA
Statistics
Matches: 1300, Mismatches: 60, Indels: 106
0.89 0.04 0.07
Matches are distributed among these distances:
150 11 0.01
151 60 0.05
153 56 0.04
154 173 0.13
155 28 0.02
156 257 0.20
157 203 0.16
158 142 0.11
159 78 0.06
160 6 0.00
161 193 0.15
162 23 0.02
164 60 0.05
165 10 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (155 bp):
ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAAAAAACA
GAAATTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTT
TTGAAAAAAACAGAAATTTTAAAAA
Found at i:63545651 original size:11 final size:10
Alignment explanation
Indices: 63545634--63545752 Score: 75
Period size: 11 Copynumber: 11.3 Consensus size: 10
63545624 TTCATCTTGA
63545634 TTTTTCTTTT
1 TTTTTCTTTT
63545644 TCTTTTCTTTGT
1 T-TTTTCTTT-T
63545656 TTTTTCTTTT
1 TTTTTCTTTT
63545666 TTTGTT-TTGTT
1 TTT-TTCTT-TT
*
63545677 TTTTTGTTTT
1 TTTTTCTTTT
63545687 GTTTTT-TTGTT
1 -TTTTTCTT-TT
63545698 TTGTTT-TTTT
1 TT-TTTCTTTT
*
63545708 GTTGTT-TTTT
1 -TTTTTCTTTT
* *
63545718 TTGTTGTTTT
1 TTTTTCTTTT
*
63545728 TTTTTGTTTT
1 TTTTTCTTTT
63545738 TTGTTTACTTTT
1 TT-TTT-CTTTT
63545750 TTT
1 TTT
63545753 CAGGCATAAT
Statistics
Matches: 94, Mismatches: 3, Indels: 23
0.78 0.03 0.19
Matches are distributed among these distances:
9 5 0.05
10 38 0.40
11 43 0.46
12 8 0.09
ACGTcount: A:0.01, C:0.04, G:0.11, T:0.84
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:63545720 original size:46 final size:44
Alignment explanation
Indices: 63545652--63545752 Score: 125
Period size: 46 Copynumber: 2.2 Consensus size: 44
63545642 TTTCTTTTCT
63545652 TTGTTTTTTCTTTTTTTGTTTTGTT-TTTTTGTTTTGTTTTTTTGTT
1 TTGTTTTTT-TTTTTTTGTTTTGTTGTTTTT-TTTTG-TTTTTTGTT
63545698 TTGTTTTTTTGTTGTTTT-TTTTGTTGTTTTTTTTTGTTTTTTGTT
1 TTGTTTTTTT-TT-TTTTGTTTTGTTGTTTTTTTTTGTTTTTTGTT
**
63545743 TACTTTTTTT
1 TTGTTTTTTT
63545753 CAGGCATAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
45 18 0.36
46 23 0.46
47 9 0.18
ACGTcount: A:0.01, C:0.02, G:0.13, T:0.84
Consensus pattern (44 bp):
TTGTTTTTTTTTTTTTGTTTTGTTGTTTTTTTTTGTTTTTTGTT
Found at i:63545750 original size:33 final size:31
Alignment explanation
Indices: 63545642--63545752 Score: 118
Period size: 33 Copynumber: 3.4 Consensus size: 31
63545632 GATTTTTCTT
63545642 TTTCTTTTCTTTGTTTTTTCTTTTT-TTGTTTTG
1 TTTCTTTT-TTTGTTTTTT-TTTTTGTT-TTTTG
*
63545675 TTTTTTTGTTTTGTTTTTTTGTTTTGTTTTTTTG
1 TTTCTTT-TTTTGTTTTTTT-TTTTG-TTTTTTG
63545709 TTGT-TTTTTTTGTTGTTTTTTTTTGTTTTTTG
1 TT-TCTTTTTTTGTT-TTTTTTTTTGTTTTTTG
63545741 TTTACTTTTTTT
1 TTT-CTTTTTTT
63545753 CAGGCATAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
31 1 0.01
32 10 0.14
33 39 0.57
34 16 0.23
35 3 0.04
ACGTcount: A:0.01, C:0.04, G:0.12, T:0.84
Consensus pattern (31 bp):
TTTCTTTTTTTGTTTTTTTTTTTGTTTTTTG
Found at i:63545752 original size:1 final size:1
Alignment explanation
Indices: 63545634--63545739 Score: 68
Period size: 1 Copynumber: 106.0 Consensus size: 1
63545624 TTCATCTTGA
* * * * * * * * * *
63545634 TTTTTCTTTTTCTTTTCTTTGTTTTTTCTTTTTTTGTTTTGTTTTTTTGTTTTGTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
63545699 TGTTTTTTTGTTGTTTTTTTTGTTGTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
63545740 GTTTACTTTT
Statistics
Matches: 73, Mismatches: 32, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (1 bp):
T
Found at i:63545752 original size:13 final size:13
Alignment explanation
Indices: 63545657--63545737 Score: 121
Period size: 13 Copynumber: 6.3 Consensus size: 13
63545647 TTTCTTTGTT
*
63545657 TTTTCTTTTTTTG
1 TTTTGTTTTTTTG
63545670 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
63545683 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
63545696 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
*
63545709 TTGT-TTTTTTTG
1 TTTTGTTTTTTTG
63545721 TTGTT-TTTTTTTG
1 TT-TTGTTTTTTTG
63545734 TTTT
1 TTTT
63545738 TTGTTTACTT
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
12 12 0.19
13 52 0.81
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (13 bp):
TTTTGTTTTTTTG
Found at i:63553157 original size:17 final size:15
Alignment explanation
Indices: 63553104--63553157 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
63553094 CTTTTTCCTT
63553104 TTTTGAAAACACGAAAA
1 TTTT-AAAACAC-AAAA
*
63553121 TTTTAAAATACAAGAA
1 TTTTAAAACACAA-AA
63553137 TTTTAGAAACACAAAA
1 TTTTA-AAACACAAAA
63553153 CTTTT
1 -TTTT
63553158 TTTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 2 0.06
16 15 0.47
17 15 0.47
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.31
Consensus pattern (15 bp):
TTTTAAAACACAAAA
Found at i:63553196 original size:16 final size:16
Alignment explanation
Indices: 63553165--63553195 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63553155 TTTTTTTAAA
63553165 AAAACATGAAGATTTT
1 AAAACATGAAGATTTT
63553181 AAAACATG-AGATTTT
1 AAAACATGAAGATTTT
63553196 TTATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.48, C:0.06, G:0.13, T:0.32
Consensus pattern (16 bp):
AAAACATGAAGATTTT
Found at i:63553235 original size:20 final size:21
Alignment explanation
Indices: 63553200--63553240 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
63553190 GATTTTTTAT
63553200 TTTTATTTTTGAAAACACGAA
1 TTTTATTTTTGAAAACACGAA
63553221 TTTTATTTTTG-AAACACGAA
1 TTTTATTTTTGAAAACACGAA
63553241 AATTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
TTTTATTTTTGAAAACACGAA
Found at i:63553253 original size:37 final size:37
Alignment explanation
Indices: 63553204--63553283 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
63553194 TTTTATTTTT
*
63553204 ATTTTTGAAAACACG-AATTTTATTTTTGAAACACGA-AA
1 ATTTTTGAAAACA-GAAAATTTATTTTTGAAA-AC-ATAA
*
63553242 ATTTTT-AAAACAGAAAATTTGTTTTTGAAAACATAA
1 ATTTTTGAAAACAGAAAATTTATTTTTGAAAACATAA
63553278 ATTTTT
1 ATTTTT
63553284 TTGATAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
35 1 0.03
36 11 0.29
37 20 0.53
38 6 0.16
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.41
Consensus pattern (37 bp):
ATTTTTGAAAACAGAAAATTTATTTTTGAAAACATAA
Found at i:63553257 original size:16 final size:17
Alignment explanation
Indices: 63553225--63553261 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
63553215 CACGAATTTT
*
63553225 ATTTTTGAAACACGAAA
1 ATTTTTAAAACACGAAA
63553242 ATTTTTAAAACA-GAAA
1 ATTTTTAAAACACGAAA
63553258 ATTT
1 ATTT
63553262 GTTTTTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (17 bp):
ATTTTTAAAACACGAAA
Found at i:63553279 original size:20 final size:19
Alignment explanation
Indices: 63553243--63553285 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
63553233 AACACGAAAA
63553243 TTTTTAAAACAGAAAATTT
1 TTTTTAAAACAGAAAATTT
*
63553262 GTTTTTGAAAACA-TAAATTT
1 -TTTTT-AAAACAGAAAATTT
63553282 TTTT
1 TTTT
63553286 GATAAAATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTTTAAAACAGAAAATTT
Found at i:63553427 original size:23 final size:23
Alignment explanation
Indices: 63553397--63553490 Score: 131
Period size: 23 Copynumber: 4.2 Consensus size: 23
63553387 TTTTGTTTTT
63553397 TTTTTCATTTTAAAACACGAAAA
1 TTTTTCATTTTAAAACACGAAAA
*
63553420 TTTTTCATTTGAAAACACGAAAA
1 TTTTTCATTTTAAAACACGAAAA
* *
63553443 TTTTTCATTTTAAAACGCG-GAA
1 TTTTTCATTTTAAAACACGAAAA
63553465 TTTTT--TTTTAAAACACGAAAA
1 TTTTTCATTTTAAAACACGAAAA
*
63553486 CTTTT
1 TTTTT
63553491 GAAAATGCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
20 11 0.17
21 6 0.10
22 7 0.11
23 39 0.62
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.41
Consensus pattern (23 bp):
TTTTTCATTTTAAAACACGAAAA
Found at i:63554207 original size:24 final size:24
Alignment explanation
Indices: 63554178--63554256 Score: 83
Period size: 24 Copynumber: 3.2 Consensus size: 24
63554168 TTTTTAATTT
63554178 TTTTTTCTTTTTCTCTTTTTCTTC
1 TTTTTTCTTTTTCTCTTTTTCTTC
* *
63554202 TATTTTT-TCTTTCTATTTTTTCTAT-
1 T-TTTTTCTTTTTCT-CTTTTTCT-TC
63554227 TTTTTTCCTTTTTC-CTTTTTCTTC
1 TTTTTT-CTTTTTCTCTTTTTCTTC
63554251 TTTTTT
1 TTTTTT
63554257 AGGCCGAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
23 1 0.02
24 25 0.56
25 13 0.29
26 6 0.13
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTCTTTTTCTCTTTTTCTTC
Found at i:63554209 original size:13 final size:13
Alignment explanation
Indices: 63554178--63554224 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
63554168 TTTTTAATTT
* *
63554178 TTTTTTCTTTTTC
1 TTTTTTCTTTCTA
63554191 TCTTTTTC-TTCTA
1 T-TTTTTCTTTCTA
63554204 TTTTTTCTTTCTA
1 TTTTTTCTTTCTA
63554217 TTTTTTCT
1 TTTTTTCT
63554225 ATTTTTTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 6 0.20
13 18 0.60
14 6 0.20
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTCTTTCTA
Found at i:63554386 original size:15 final size:15
Alignment explanation
Indices: 63554366--63554398 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63554356 CTCTTCTTTC
63554366 TTTTTGGTTGCTATT
1 TTTTTGGTTGCTATT
*
63554381 TTTTTGGTTGCTGTT
1 TTTTTGGTTGCTATT
63554396 TTT
1 TTT
63554399 GTTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.06, G:0.21, T:0.70
Consensus pattern (15 bp):
TTTTTGGTTGCTATT
Found at i:63554904 original size:29 final size:29
Alignment explanation
Indices: 63554810--63554965 Score: 113
Period size: 30 Copynumber: 5.2 Consensus size: 29
63554800 AAATATGGGC
*
63554810 CAAAATGTAATTTCTTG-AAAGTTTAGGGGT
1 CAAAATGTAATTT-TAGAAAAGTTTA-GGGT
* * *
63554840 TAAAGTGAAATTTT-GAGAAAGTTTAAGGGT
1 CAAAATGTAATTTTAGA-AAAGTTT-AGGGT
** *
63554870 TGAAATGTAATTTTAGAAAA-TTTTGTGGT
1 CAAAATGTAATTTTAGAAAAGTTTAG-GGT
63554899 CAAAATGTAAATTTTA-AAAAGGTTTAGGGT
1 CAAAATGT-AATTTTAGAAAA-GTTTAGGGT
* * **
63554929 CAAAATGTAAATTTCGAAAAGTACAGGGGT
1 CAAAATGTAATTTTAGAAAAGTTTA-GGGT
63554959 CAAAATG
1 CAAAATG
63554966 CATTTTTTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.02
29 25 0.25
30 68 0.67
31 7 0.07
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.33
Consensus pattern (29 bp):
CAAAATGTAATTTTAGAAAAGTTTAGGGT
Found at i:63554911 original size:60 final size:58
Alignment explanation
Indices: 63554810--63554965 Score: 143
Period size: 59 Copynumber: 2.6 Consensus size: 58
63554800 AAATATGGGC
* * * * *
63554810 CAAAATGTAATTTCTTGAAAGTTTAGGGGTTAAAGTGAAATTTTGAGAAA-GTTTAAGGGT
1 CAAAATGTAATTT-TAGAAAATTTAGGGGTCAAAATGAAATTTT-AAAAAGGTTT-AGGGT
** * *
63554870 TGAAATGTAATTTTAGAAAATTTTGTGGTCAAAATGTAAATTTTAAAAAGGTTTAGGGT
1 CAAAATGTAATTTTAGAAAATTTAGGGGTCAAAATG-AAATTTTAAAAAGGTTTAGGGT
* * **
63554929 CAAAATGTAAATTTCGAAAAGTACAGGGGTCAAAATG
1 CAAAATGTAATTTTAGAAAA-TTTAGGGGTCAAAATG
63554966 CATTTTTTTA
Statistics
Matches: 76, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
59 42 0.55
60 34 0.45
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.33
Consensus pattern (58 bp):
CAAAATGTAATTTTAGAAAATTTAGGGGTCAAAATGAAATTTTAAAAAGGTTTAGGGT
Found at i:63558365 original size:13 final size:13
Alignment explanation
Indices: 63558347--63558373 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63558337 TTCATTTTAG
63558347 TAATATTATATTT
1 TAATATTATATTT
63558360 TAATATTATATTT
1 TAATATTATATTT
63558373 T
1 T
63558374 TAAAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATATTATATTT
Found at i:63560112 original size:18 final size:19
Alignment explanation
Indices: 63560089--63560150 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
63560079 ATAATCAAAT
63560089 ATAATAAT-GTCAATAACA
1 ATAATAATAGTCAATAACA
*
63560107 ATAATAAATAGT-AATAAAA
1 ATAAT-AATAGTCAATAACA
*
63560126 ATAAAAATAGTCAATTAATCA
1 ATAATAATAGTCAA-TAA-CA
63560147 ATAA
1 ATAA
63560151 ATTAATGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 11 0.31
19 15 0.42
20 5 0.14
21 5 0.14
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.27
Consensus pattern (19 bp):
ATAATAATAGTCAATAACA
Found at i:63569048 original size:16 final size:16
Alignment explanation
Indices: 63569027--63569072 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
63569017 TGTATTGGAT
*
63569027 TAGAGGCGTAATAGAA
1 TAGAGGTGTAATAGAA
*
63569043 TAGAGGTGTAATGGAA
1 TAGAGGTGTAATAGAA
63569059 TAGAGGTGTAATAG
1 TAGAGGTGTAATAG
63569073 GAAATCAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.35, T:0.24
Consensus pattern (16 bp):
TAGAGGTGTAATAGAA
Found at i:63569153 original size:39 final size:39
Alignment explanation
Indices: 63569052--63569155 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 39
63569042 ATAGAGGTGT
*
63569052 AATGGAATAGAGGTGTAATAGGAAATCAACTGTTTGGTTG
1 AATGGAATAGAGGTGTAATA-GAAATCAACTATTTGGTTG
* * ***
63569092 AATGTAATGAATAGAGGCGTAATAGTAATCTTGTATTTGGTTG
1 AATG----GAATAGAGGTGTAATAGAAATCAACTATTTGGTTG
63569135 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAGGTGTAATAG
63569156 CATAATGGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
39 16 0.30
40 4 0.08
43 18 0.34
44 15 0.28
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.32
Consensus pattern (39 bp):
AATGGAATAGAGGTGTAATAGAAATCAACTATTTGGTTG
Found at i:63569320 original size:16 final size:16
Alignment explanation
Indices: 63569283--63569324 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63569273 TTAATCATAT
*
63569283 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
63569299 TT-AAATATATTATAA
1 TTAAAATATATTATAA
63569314 TTAAAATATAT
1 TTAAAATATAT
63569325 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:63569331 original size:14 final size:15
Alignment explanation
Indices: 63569292--63569333 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63569282 TTTAAACATA
*
63569292 ATTATTATTAAATAT
1 ATTATAATTAAATAT
63569307 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
63569321 A-TATAATTTAATA
1 ATTATAATTAAATA
63569334 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:63569428 original size:120 final size:121
Alignment explanation
Indices: 63569286--63569578 Score: 484
Period size: 120 Copynumber: 2.4 Consensus size: 121
63569276 ATCATATTTA
*
63569286 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
**
63569351 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATTTAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
*
63569406 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
63569471 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* * *
63569527 AA-ATGATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACAT-AATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
63569579 TAAAATAATT
Statistics
Matches: 163, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
120 157 0.96
121 6 0.04
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:63569456 original size:59 final size:59
Alignment explanation
Indices: 63569286--63569466 Score: 181
Period size: 59 Copynumber: 3.0 Consensus size: 59
63569276 ATCATATTTA
*
63569286 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTAAAT
* * * * * * * *
63569345 AATCA-ATATTCTTATATGAATTTACTCA-AATCATAATATATGATACT-ATAAAATT-TAAATT
1 AA-CATA-ATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-TTAATAAAATTCTAAA-T
* *
63569406 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTAAAT
63569465 AA
1 AA
63569467 TTAATATTCT
Statistics
Matches: 93, Mismatches: 19, Indels: 20
0.70 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 33 0.35
60 23 0.25
61 31 0.33
62 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (59 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTAAAT
Found at i:63569504 original size:59 final size:59
Alignment explanation
Indices: 63569321--63569504 Score: 182
Period size: 59 Copynumber: 3.1 Consensus size: 59
63569311 TAATTAAAAT
*
63569321 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
63569380 ATAT-ATGATACTATAAAATT-TAAATTAACATAATAATTATTAAAT-ATATTATAATTAAA--A
1 ATATAAT-TTA--ATAAAATTCTTAA-TAA-TTAAT-ATTCTTATATGA-ATT-TACTCAAATCA
63569440 T-
58 TA
63569441 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
63569500 ATATA
1 ATATA
63569505 TGATACTATA
Statistics
Matches: 96, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
56 6 0.06
57 11 0.11
58 9 0.09
59 22 0.23
60 6 0.06
61 17 0.18
62 8 0.08
63 11 0.11
64 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
Found at i:63569517 original size:61 final size:61
Alignment explanation
Indices: 63569331--63569517 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
63569321 ATATAATTTA
*
63569331 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * * * *
63569392 ATAAAATT-TAAATTAACATAATAATTATTAAAT--ATATTA-T--AATTAAAATATATAAT-TT
1 ATAAAATTCTTAA-TAA-TTAAT-ATTCTTATATGAAT-TTACTCAAATCATAATATATGATACT
63569450 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
63569512 ATAAAA
1 ATAAAA
63569518 GATAATTTGA
Statistics
Matches: 97, Mismatches: 17, Indels: 24
0.70 0.12 0.17
Matches are distributed among these distances:
57 8 0.08
58 8 0.08
59 27 0.28
60 6 0.06
61 33 0.34
62 7 0.07
63 8 0.08
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
Found at i:63569648 original size:26 final size:28
Alignment explanation
Indices: 63569619--63569679 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
63569609 TATGAATTTG
*
63569619 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
63569645 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
63569673 TAAAATT
1 TATAATT
63569680 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:63569681 original size:91 final size:89
Alignment explanation
Indices: 63569585--63569801 Score: 299
Period size: 91 Copynumber: 2.4 Consensus size: 89
63569575 AATTTAAAAT
* * * *
63569585 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
63569650 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
63569676 AATTATTGATAATAATTGTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAAAT-TTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
63569741 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
63569767 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
63569802 CTAAAATCAA
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
91 89 0.79
92 23 0.21
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:63569682 original size:44 final size:42
Alignment explanation
Indices: 63569619--63569761 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 42
63569609 TATGAATTTG
63569619 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
63569663 TATAATTTCATAA-AATTATTGA-TAATAATTGTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* *
63569710 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAAT-ATA
63569754 TATAATTT
1 TATAATTT
63569762 CATAAAATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
43 5 0.06
44 29 0.38
45 9 0.12
46 9 0.12
47 19 0.25
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:63569776 original size:47 final size:47
Alignment explanation
Indices: 63569626--63569782 Score: 128
Period size: 47 Copynumber: 3.4 Consensus size: 47
63569616 TTGTATAATT
* * * * *
63569626 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* * * * *
63569673 TAAAATTATTGATAAT-AAT-T-GTTCTTAT-ATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATT-TAATAATG-ATATATA-ATTTCA
* *
63569717 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
63569764 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
63569783 ATGTTCTTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
44 17 0.21
45 16 0.20
46 15 0.19
47 33 0.41
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:63572906 original size:33 final size:33
Alignment explanation
Indices: 63572867--63572942 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
63572857 ATTATAAAGC
*
63572867 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
63572900 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
63572933 ATGTATAATT
1 ATGTATAATT
63572943 CAAGTTTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:63573040 original size:37 final size:37
Alignment explanation
Indices: 63572985--63573067 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
63572975 GTATAAATAT
* *
63572985 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
*
63573022 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
63573059 ATTGATTAG
1 ATTGATTAG
63573068 ATTATTTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (37 bp):
ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
Found at i:63574330 original size:69 final size:69
Alignment explanation
Indices: 63574219--63574355 Score: 202
Period size: 69 Copynumber: 2.0 Consensus size: 69
63574209 TGATTTCCAT
*
63574219 TTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCAGA
1 TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCAGA
63574284 ACAG
66 ACAG
* * * * * * *
63574288 TTTCATCTTCTACTCACTAACAAATTAATAACATTTTCCAGCAGACTATCAAAACAATTTCCAGA
1 TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCAGA
63574353 ACA
66 ACA
63574356 AACCAACAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.26
Consensus pattern (69 bp):
TTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCAGA
ACAG
Found at i:63584096 original size:25 final size:25
Alignment explanation
Indices: 63584068--63584122 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
63584058 AAGTTCCTTT
63584068 TGTACAACGTAGTTTACCTCCTATA
1 TGTACAACGTAGTTTACCTCCTATA
63584093 TGTACAACGTAGTTTACCTCCTATA
1 TGTACAACGTAGTTTACCTCCTATA
63584118 TGTAC
1 TGTAC
63584123 GGCCTGTCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (25 bp):
TGTACAACGTAGTTTACCTCCTATA
Found at i:63585039 original size:21 final size:21
Alignment explanation
Indices: 63585013--63585054 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
63585003 CATCTCCTAT
63585013 GGCACACTCCTCAGTCCCATC
1 GGCACACTCCTCAGTCCCATC
63585034 GGCACACTCCTCAGTCCCATC
1 GGCACACTCCTCAGTCCCATC
63585055 TCATCTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.48, G:0.14, T:0.19
Consensus pattern (21 bp):
GGCACACTCCTCAGTCCCATC
Found at i:63608250 original size:17 final size:16
Alignment explanation
Indices: 63608206--63608258 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
63608196 TTTGGTTCGC
63608206 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
63608222 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
63608238 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
63608255 TGTA
1 TGTA
63608259 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:63608515 original size:18 final size:17
Alignment explanation
Indices: 63608494--63608528 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63608484 TTATTATTAA
*
63608494 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
63608512 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63608529 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63608846 original size:66 final size:65
Alignment explanation
Indices: 63608774--63609331 Score: 268
Period size: 66 Copynumber: 9.2 Consensus size: 65
63608764 GAAATTCTTA
*
63608774 ATAATTAATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAA
1 ATAATTAATATTCTTATATTAATTTACT-AAATCATAATATATAATACTGTAAAATATAAATTAA
63608839 C
65 C
* ** * * *
63608840 ATAATTATTATT-AAATA-TAATTTAAT-AA--A-AATATATAAT-TTAGTAAAAT-T--CTT-A
1 ATAATTAATATTCTTATATTAATTTACTAAATCATAATATATAATACT-GTAAAATATAAATTAA
63608894 -
65 C
* * * *
63608894 AT-ATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAATTTA
1 ATAATT-AATATTCTTATATTAATTTACT-AAATCATAATATATAATACTGTAAAATATAAATTA
63608958 AC
64 AC
* ** * *
63608960 ATAATTATTATT-AAATA-TAATTTAAT-AA--A-AATATATAAT--T-T--AATA-AAATTCTT
1 ATAATTAATATTCTTATATTAATTTACTAAATCATAATATATAATACTGTAAAATATAAA-T-TA
63609013 A-
64 AC
* * *
63609014 AT-ATTAAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTA
1 ATAATT-AATATTCTTATATTAATTTACT-AAATCATAATATATAATACTGTAAAATATAAATTA
63609078 AC
64 AC
* ** *
63609080 ATAATTATTATT-AAATA-T-A-TTA-TAAAT-AAAATATATAAT--T-T--AATA-AAATTATT
1 ATAATTAATATTCTTATATTAATTTACTAAATCATAATATATAATACTGTAAAATATAAATTA--
63609133 A-
64 AC
* * * *
63609134 ATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTAA
1 ATAATTAATATTCTTATATTAATTTACT-AAATCATAATATATAATACTGTAAAATATAAATTAA
63609199 C
65 C
* ** * * * *
63609200 ATAATTATTATT-AAATA-T-A-TTA-T-AATTAAAATATATAAT--T-TAATAAAAT-TATT-A
1 ATAATTAATATTCTTATATTAATTTACTAAATCATAATATATAATACTGTAA-AATATAAATTAA
63609254 -
65 C
* * * * *
63609254 ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGA
1 ATAATTAATATTCTTATATTAATTTACT-AAATCATAATATATAATACTGTAAAATATAAATT-A
63609319 A-
64 AC
63609320 ATAATTAATATT
1 ATAATTAATATT
63609332 AAATATATTT
Statistics
Matches: 364, Mismatches: 64, Indels: 128
0.65 0.12 0.23
Matches are distributed among these distances:
53 14 0.04
54 44 0.12
55 17 0.05
56 23 0.06
57 9 0.02
58 12 0.03
59 51 0.14
60 12 0.03
61 50 0.14
62 12 0.03
63 9 0.02
64 23 0.06
65 16 0.04
66 57 0.16
67 15 0.04
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (65 bp):
ATAATTAATATTCTTATATTAATTTACTAAATCATAATATATAATACTGTAAAATATAAATTAAC
Found at i:63609113 original size:16 final size:17
Alignment explanation
Indices: 63609092--63609133 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
63609082 AATTATTATT
63609092 AAATATATTA-TAAATA
1 AAATATATTATTAAATA
* *
63609108 AAATATATAATTTAATA
1 AAATATATTATTAAATA
63609125 AAAT-TATTA
1 AAATATATTA
63609134 ATAATCAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATATTATTAAATA
Found at i:63609235 original size:18 final size:18
Alignment explanation
Indices: 63609214--63609261 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
63609204 TTATTATTAA
63609214 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
63609232 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
63609249 -TAT-TAATAATTAA
1 ATATATTATAATTAA
63609262 TATTCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:63609242 original size:14 final size:15
Alignment explanation
Indices: 63609193--63609244 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
63609183 ATAAAATATA
63609193 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
63609208 TATTAAATATATTAT
1 AATTAAATATATTAT
63609223 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
63609236 AATTTAATA
1 AATTAAATA
63609245 AAATTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:63609380 original size:120 final size:120
Alignment explanation
Indices: 63608477--63609369 Score: 1486
Period size: 120 Copynumber: 7.4 Consensus size: 120
63608467 ATCATATTTA
63608477 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
63608542 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
63608597 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
63608662 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
63608717 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
63608782 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * *
63608837 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAGTAAAATTCTTAAT-ATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATT-A
* * * *
63608901 ATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
63608957 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAAT-ATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATT-A
63609021 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * * *
63609077 AACATAATTATTATTAAATATATTATAAATAAAATATATAATTTAATAAAATTATTAATAATCAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
63609142 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
63609197 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
63609262 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
63609317 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
63609370 TAAAATAATT
Statistics
Matches: 738, Mismatches: 32, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
119 3 0.00
120 731 0.99
121 4 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Done.