Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 200 of 222
Found at i:63609416 original size:101 final size:93
Alignment explanation
Indices: 63609310--63609593 Score: 317
Period size: 91 Copynumber: 3.0 Consensus size: 93
63609300 ACTATAAAAG
* * * *
63609310 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
*
63609374 ATAATTACAACTAATAAATTATCTTATATGAATTTGT
62 -T-ATT--AA-TAATAAATTATCTTATATGAATTTAT
* * *
63609411 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
* *
63609474 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
* * *
63609502 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
* *
63609565 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
63609593 A
1 A
63609594 CAATAGATAT
Statistics
Matches: 168, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
91 112 0.67
92 1 0.01
94 2 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 48 0.29
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
AATAATAAATTATCTTATATGAATTTAT
Found at i:63609439 original size:26 final size:28
Alignment explanation
Indices: 63609410--63609470 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
63609400 TATGAATTTG
*
63609410 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
63609436 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
63609464 TAAAATT
1 TATAATT
63609471 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:63609468 original size:47 final size:46
Alignment explanation
Indices: 63609417--63609560 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
63609407 TTGTATAATT
63609417 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
63609464 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
63609508 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
63609555 TAAAAT
1 TAAAAT
63609561 TCTTGATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:63609480 original size:91 final size:91
Alignment explanation
Indices: 63609385--63609597 Score: 372
Period size: 91 Copynumber: 2.3 Consensus size: 91
63609375 TAATTACAAC
* * * * *
63609385 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
63609450 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
63609476 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
63609541 GATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
63609567 TAATAAATTTTCTTATATGAATTTATACAAT
1 TAATAAATTTTCTTATATGAATTTATACAAT
63609598 AGATATTTAA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 116 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTGA
Found at i:63609574 original size:47 final size:47
Alignment explanation
Indices: 63609435--63609574 Score: 139
Period size: 47 Copynumber: 3.0 Consensus size: 47
63609425 TTATTATTAC
*
63609435 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
* * * ** * *
63609482 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTGATAATAA
63609526 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
63609573 AT
1 AT
63609575 TTTCTTATAT
Statistics
Matches: 69, Mismatches: 15, Indels: 18
0.68 0.15 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
Found at i:63613193 original size:19 final size:19
Alignment explanation
Indices: 63613164--63613279 Score: 70
Period size: 19 Copynumber: 5.6 Consensus size: 19
63613154 CCCGATATAA
*
63613164 TAAATATATTTTTTTAATGT
1 TAAA-ATATTTTTTTAATTT
*
63613184 TAAAATATTTTTTACATACTTT
1 TAAAATATTTTTT---TAATTT
* *
63613206 TTAAATTTTTTTTTAAATTT
1 TAAAATATTTTTTT-AATTT
* *
63613226 TAAAATATTTTTAAAATACTTTT
1 TAAAATATTTTT---TTA-ATTT
** *
63613249 TTTAATTTTTTTTTAATTT
1 TAAAATATTTTTTTAATTT
63613268 TAAAATATTTTT
1 TAAAATATTTTT
63613280 AAAATACTTT
Statistics
Matches: 71, Mismatches: 17, Indels: 17
0.68 0.16 0.16
Matches are distributed among these distances:
19 22 0.31
20 20 0.28
22 16 0.23
23 13 0.18
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (19 bp):
TAAAATATTTTTTTAATTT
Found at i:63613229 original size:42 final size:42
Alignment explanation
Indices: 63613172--63613300 Score: 206
Period size: 42 Copynumber: 3.1 Consensus size: 42
63613162 AATAAATATA
* * * *
63613172 TTTTTTTAATGTTAAAATATTTTTTACATAC-TTTTTAAATT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
63613213 TTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
1 TTTTTTT-AATTTTAAAATATTTTTAAAATACTTTTTTTAATT
63613256 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
63613298 TTT
1 TTT
63613301 GAAAATTTTT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
41 7 0.09
42 59 0.72
43 16 0.20
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (42 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATT
Found at i:63613269 original size:31 final size:31
Alignment explanation
Indices: 63613234--63613316 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
63613224 TTTAAAATAT
** *
63613234 TTTTAAAATACTTTTTTTAAT-TTTTTTTTAA
1 TTTTAAAATA-TTTTTAAAATACTTTTTTTAA
63613265 TTTTAAAATATTTTTAAAATACTTTTTTTAA
1 TTTTAAAATATTTTTAAAATACTTTTTTTAA
*
63613296 TTTTTGAAA-ATTTTTAAAATA
1 -TTTTAAAATATTTTTAAAATA
63613317 AAAATGGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
30 8 0.17
31 31 0.67
32 7 0.15
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (31 bp):
TTTTAAAATATTTTTAAAATACTTTTTTTAA
Found at i:63616742 original size:106 final size:106
Alignment explanation
Indices: 63616619--63616885 Score: 430
Period size: 106 Copynumber: 2.5 Consensus size: 106
63616609 CAATTGTGGA
* ** *
63616619 TGTACTTCCTTTCTTTCCAAACAATCATGAAAAAGTTATTGCATGGTTGCTACTTTATTTTGATT
1 TGTACTACCTTTCTTTCCAAACAATCATGAAAAAGTTATCACATGGTTGCTGCTTTATTTTGATT
*
63616684 CATTCCAACATATATTCTGAATCAGCTTAGTTTTCTACTTT
66 CATTCCAACATATATTCTGAATCAGCTTAGTGTTCTACTTT
* *
63616725 TGTACTACCTTTCTTTCCAAACAATCATGAAAAATTTATCACATGGTTGCTGCTTTGTTTTGATT
1 TGTACTACCTTTCTTTCCAAACAATCATGAAAAAGTTATCACATGGTTGCTGCTTTATTTTGATT
63616790 CATTCCAACATATATTCTGAATCAGCTTAGTGTTCTACTTT
66 CATTCCAACATATATTCTGAATCAGCTTAGTGTTCTACTTT
* *
63616831 TGTACTCCCTTTCTTTCCAAACACA-AATG-AAAAGTTATCACATGGTTGCTGCTTT
1 TGTACTACCTTTCTTTCCAAACA-ATCATGAAAAAGTTATCACATGGTTGCTGCTTT
63616886 CACTTGCTCT
Statistics
Matches: 150, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
105 25 0.17
106 124 0.83
107 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (106 bp):
TGTACTACCTTTCTTTCCAAACAATCATGAAAAAGTTATCACATGGTTGCTGCTTTATTTTGATT
CATTCCAACATATATTCTGAATCAGCTTAGTGTTCTACTTT
Found at i:63620843 original size:91 final size:91
Alignment explanation
Indices: 63620717--63620924 Score: 310
Period size: 91 Copynumber: 2.3 Consensus size: 91
63620707 TTGATTTTAG
* *
63620717 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
63620782 ATTTAA-TATTAATTATTTTAAATTGTA
65 ATGTAACAATT-ATTATTTTAAATTATA
*
63620809 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
63620874 TGTAACAATTATTATTTTAAATTATA
66 TGTAACAATTATTATTTTAAATTATA
* * *
63620900 CAAATTCATATAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
63620925 GTTATAATTA
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
91 87 0.82
92 19 0.18
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAACAATTATTATTTTAAATTATA
Found at i:63620891 original size:47 final size:46
Alignment explanation
Indices: 63620749--63620892 Score: 104
Period size: 47 Copynumber: 3.1 Consensus size: 46
63620739 ATTATTAAGA
* *
63620749 ATTTTATGAAATTATATATCATTATTAAATTATATTTAA-TATTAATT
1 ATTTTATGAAATTATATATTATTATTAAATTATA-TTAACAATT-ATT
* * ** * *
63620796 ATTTTA--AATTGTATAAATTCATATAAGAAAATT-TATTATCAA-GA--
1 ATTTTATGAAAT-TATATATT-AT-T-ATTAAATTATATTAACAATTATT
63620840 ATTTTATGAAATTATATATTATTATTAAATTATATGTAACAATTATT
1 ATTTTATGAAATTATATATTATTATTAAATTATAT-TAACAATTATT
63620887 ATTTTA
1 ATTTTA
63620893 AATTATACAA
Statistics
Matches: 71, Mismatches: 14, Indels: 24
0.65 0.13 0.22
Matches are distributed among these distances:
42 6 0.08
43 4 0.06
44 13 0.18
45 11 0.15
46 10 0.14
47 17 0.24
48 4 0.06
49 6 0.08
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (46 bp):
ATTTTATGAAATTATATATTATTATTAAATTATATTAACAATTATT
Found at i:63620899 original size:44 final size:43
Alignment explanation
Indices: 63620757--63620899 Score: 103
Period size: 44 Copynumber: 3.2 Consensus size: 43
63620747 GAATTTTATG
* *
63620757 AAATTATATATCATTATTAAATTATATTTAA-TATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAACAATT-ATTATTTT
* ** * ** *
63620801 AAATTGTATAAATTCATATAAGAAAATT-TATTATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAACAATTATTATT-TT
63620848 AAATTATATATTATTATTAAATTATATGTAACAATTATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAACAATTATTATTTT
63620892 AAATTATA
1 AAATTATA
63620900 CAAATTCATA
Statistics
Matches: 73, Mismatches: 16, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 22 0.30
45 10 0.14
46 9 0.12
47 12 0.16
48 4 0.05
49 6 0.08
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAACAATTATTATTTT
Found at i:63621049 original size:66 final size:63
Alignment explanation
Indices: 63620978--63621174 Score: 173
Period size: 66 Copynumber: 3.2 Consensus size: 63
63620968 AAATGTATTT
63620978 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
63621043 G
63 G
* * * * * *
63621044 AATATTAATTATTAAGAATT-TTATTAA--ATTATATATTTTAATTAT-AATAAA-T--T-T---
1 AATATTAATTATTTA-AATTATTTTTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* *
63621098 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
63621163 G
63 G
63621164 AATATTAATTA
1 AATATTAATTA
63621175 CTAAGAATTT
Statistics
Matches: 100, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
54 14 0.14
55 3 0.03
56 4 0.04
57 2 0.02
58 2 0.02
59 18 0.18
60 2 0.02
61 18 0.18
62 2 0.02
63 2 0.02
64 4 0.04
65 2 0.02
66 27 0.27
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (63 bp):
AATATTAATTATTTAAATTATTTTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:63621064 original size:120 final size:120
Alignment explanation
Indices: 63620940--63621237 Score: 490
Period size: 120 Copynumber: 2.5 Consensus size: 120
63620930 AATTATTTTA
* * * * *
63620940 AATTTTATTAAATCATATATTTTAATTAAAATGTATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
* *
63621004 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAG
* *
63621060 AATTTTATTAAATTATATATTTTAATTATAATAAATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
63621125 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAG
63621180 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
63621238 ATGATTAAAT
Statistics
Matches: 165, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
120 158 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAG
Found at i:63621080 original size:61 final size:61
Alignment explanation
Indices: 63621013--63621200 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
63621003 TTATAGTATC
63621013 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
63621074 ATATATTTTAATTAT-AATAAATTTA-ATAATAATTATGTTAA-T-TT-A-TATTTTA-CAGTAT
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AAT
*
63621132 C
61 T
*
63621133 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTACTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
63621194 ATATATT
1 ATATATT
63621201 TTAATTATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 4 0.04
58 3 0.03
59 30 0.31
60 14 0.15
61 38 0.40
62 3 0.03
63 4 0.04
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:63621215 original size:16 final size:16
Alignment explanation
Indices: 63621194--63621235 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63621184 TTATTAAATT
*
63621194 ATATATTTTAATTATA
1 ATATATTTTAATAATA
63621210 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
63621225 AT-TATGTTTAA
1 ATATAT-TTTAA
63621236 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:63621220 original size:15 final size:15
Alignment explanation
Indices: 63621185--63621226 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63621175 CTAAGAATTT
*
63621185 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63621199 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63621213 TATTTAATAATAAT
1 TATTTAATTATAAT
63621227 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63621468 original size:45 final size:44
Alignment explanation
Indices: 63621361--63621470 Score: 113
Period size: 45 Copynumber: 2.6 Consensus size: 44
63621351 GTTTCCATTA
63621361 TGCTATTACACCTCTA-TTC----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTTCATTACATTCAACCAAACACAAGAT
* * * * ***
63621400 TACTATTACGCCTATATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTTCATTACATTCAACCAAACACAAGA-T
63621445 TGCTATTACACCTCTATTTCATTACA
1 TGCTATTACACCTCTATTTCATTACA
63621471 CCTCTATTCC
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
39 13 0.24
40 2 0.04
44 16 0.30
45 23 0.43
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTTCATTACATTCAACCAAACACAAGAT
Found at i:63621470 original size:16 final size:16
Alignment explanation
Indices: 63621449--63621502 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
63621439 TTGATTTGCT
*
63621449 ATTACACCTCTATTTC
1 ATTACACCTCTATTCC
63621465 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
63621481 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
63621497 AATACA
1 ATTACA
63621503 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.28, C:0.33, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:63622856 original size:30 final size:31
Alignment explanation
Indices: 63622820--63622877 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
63622810 GCCCGGTGTT
*
63622820 TTAAAT-AAAATTTTCAAATAATTTAATAAC
1 TTAAATAAAAACTTTCAAATAATTTAATAAC
*
63622850 TTAAATAAAAACTTTCAAATAGTTTAAT
1 TTAAATAAAAACTTTCAAATAATTTAAT
63622878 GACAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (31 bp):
TTAAATAAAAACTTTCAAATAATTTAATAAC
Found at i:63626620 original size:15 final size:15
Alignment explanation
Indices: 63626588--63626636 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
63626578 AAGAATTTTA
63626588 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
63626601 TTAATTATAATATAT
1 TTAATTATAATATAT
*
63626616 TTAATAATAAT-TAT
1 TTAATTATAATATAT
63626630 GTTAATT
1 -TTAATT
63626637 TATATTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.26
14 7 0.23
15 16 0.52
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:63626658 original size:119 final size:120
Alignment explanation
Indices: 63626524--63626752 Score: 451
Period size: 119 Copynumber: 1.9 Consensus size: 120
63626514 TTTGAGTAAA
63626524 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
63626589 T-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
63626643 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
63626708 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
63626753 TAAATATGAT
Statistics
Matches: 109, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 66 0.61
120 43 0.39
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (120 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:63626735 original size:16 final size:16
Alignment explanation
Indices: 63626714--63626755 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63626704 TTATTAAATT
*
63626714 ATATATTTTAATTATA
1 ATATATTTTAATAATA
63626730 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
63626745 AT-TATGTTTAA
1 ATATAT-TTTAA
63626756 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:63626740 original size:15 final size:15
Alignment explanation
Indices: 63626705--63626746 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63626695 TTAAGAATTT
*
63626705 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63626719 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63626733 TATTTAATAATAAT
1 TATTTAATTATAAT
63626747 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63626981 original size:45 final size:44
Alignment explanation
Indices: 63626900--63626990 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
63626890 ACTTCTATTC
* *
63626900 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCAATA
*** *
63626944 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCAATA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCAATA
63626989 CA
1 CA
63626991 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCAATA
Found at i:63626992 original size:16 final size:16
Alignment explanation
Indices: 63626971--63627022 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
63626961 GATTTGCTAT
*
63626971 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
63626987 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
*
63627003 TACAACTCTAATCCAA
1 TACACCTCTAATCCAA
63627019 TACA
1 TACA
63627023 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:63631002 original size:12 final size:12
Alignment explanation
Indices: 63630985--63631009 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63630975 CAAATAATAC
63630985 AAAAAAATTAAA
1 AAAAAAATTAAA
63630997 AAAAAAATTAAA
1 AAAAAAATTAAA
63631009 A
1 A
63631010 TAGTACAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAATTAAA
Found at i:63631126 original size:27 final size:27
Alignment explanation
Indices: 63631063--63631132 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
63631053 GTGGAGGGAC
* *
63631063 TGCCACAGGCGGCACCAATGGTGCCAG
1 TGCCACAGGCGGCACCAAAGGTGCAAG
* * * * *
63631090 TGGCAGAGGCAGCACCAAAGTTGCAAT
1 TGCCACAGGCGGCACCAAAGGTGCAAG
63631117 TGCCACAGGCGGCACC
1 TGCCACAGGCGGCACC
63631133 TCCCATTTAT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.31, G:0.31, T:0.11
Consensus pattern (27 bp):
TGCCACAGGCGGCACCAAAGGTGCAAG
Found at i:63631714 original size:161 final size:159
Alignment explanation
Indices: 63631504--63631868 Score: 540
Period size: 161 Copynumber: 2.3 Consensus size: 159
63631494 GGCGGCACCC
* * *
63631504 CCTTTGTTCGTATTTTTCTCTTTTTTCGGATTTTATTACTTTTAAAAAATATACTATTTTTGTAT
1 CCTTTGTTCGTATTTTTCTTTTTTTTCGAATTTTATTACTTTCAAAAAATATACTATTTTTGTAT
*
63631569 TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTATTGTT-GTGTG-TTTTTAT
66 TTTATTATTTTATATTATTTTAGTAAATAAAGTTTGAAATGTATTATT-TTAGTGTGTTTTTTAT
* * *
63631632 -ATAAATTTAGT-AAAAAGTCCTTATTTTGG
130 AAAAAAATTAGTGAAAAA-CCCTTATTTTGG
* *
63631661 CACTTTGTTCGTATTTTTCTATTTTTTTTTCAAATTTTATTACTTTCAAAAAATATATTATTTTT
1 C-CTTTGTTCGTATTTTTC---TTTTTTTTCGAATTTTATTACTTTCAAAAAATATACTATTTTT
*
63631726 GTATTTTATTATTTTATATTATTTTAGTAAATAATGTTTGAAATGTATTATTTTAGTGTGTTTTT
62 GTATTTTATTATTTTATATTATTTTAGTAAATAAAGTTTGAAATGTATTATTTTAGTGTGTTTTT
63631791 TATAAAAAAAATTAGTGAAAAACCCTTATTTTGG
127 TAT-AAAAAAATTAGTGAAAAACCCTTATTTTGG
63631825 CCATTTGTTCGTATTTTTCTTTTTTTTCGAATTTTATTACTTTC
1 CC-TTTGTTCGTATTTTTCTTTTTTTTCGAATTTTATTACTTTC
63631869 CGTAAATTTA
Statistics
Matches: 187, Mismatches: 11, Indels: 16
0.87 0.05 0.07
Matches are distributed among these distances:
157 1 0.01
158 17 0.09
160 2 0.01
161 117 0.63
162 7 0.04
163 1 0.01
164 37 0.20
165 5 0.03
ACGTcount: A:0.27, C:0.08, G:0.09, T:0.56
Consensus pattern (159 bp):
CCTTTGTTCGTATTTTTCTTTTTTTTCGAATTTTATTACTTTCAAAAAATATACTATTTTTGTAT
TTTATTATTTTATATTATTTTAGTAAATAAAGTTTGAAATGTATTATTTTAGTGTGTTTTTTATA
AAAAAATTAGTGAAAAACCCTTATTTTGG
Found at i:63631886 original size:34 final size:31
Alignment explanation
Indices: 63631846--63631917 Score: 81
Period size: 34 Copynumber: 2.2 Consensus size: 31
63631836 TATTTTTCTT
63631846 TTTTTTCGAATTTTATTACTTTCCGTAAATTTA
1 TTTTTTCGAATTTTATTACTTTCCGT--ATTTA
** * *
63631879 TTGTTTTCGTTTTTTATTTCTTTTCGTATTTA
1 TT-TTTTCGAATTTTATTACTTTCCGTATTTA
63631911 TTTTTTC
1 TTTTTTC
63631918 ATAAACATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 5 0.15
32 7 0.21
33 2 0.06
34 20 0.59
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (31 bp):
TTTTTTCGAATTTTATTACTTTCCGTATTTA
Found at i:63632049 original size:27 final size:28
Alignment explanation
Indices: 63632000--63632054 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
63631990 TAAAGAGAGA
* * * *
63632000 GTGCCGCCTGTGGCAGTGGCACC-TTTG
1 GTGCCGCCTCTGCCACTGACACCATTTG
63632027 GTGCCGCCTCTGCCACTGACACCATTTG
1 GTGCCGCCTCTGCCACTGACACCATTTG
63632055 CCACTGACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.11, C:0.35, G:0.29, T:0.25
Consensus pattern (28 bp):
GTGCCGCCTCTGCCACTGACACCATTTG
Found at i:63632058 original size:16 final size:16
Alignment explanation
Indices: 63632037--63632068 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63632027 GTGCCGCCTC
63632037 TGCCACTGACACCATT
1 TGCCACTGACACCATT
63632053 TGCCACTGACACCATT
1 TGCCACTGACACCATT
63632069 GATGCCGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (16 bp):
TGCCACTGACACCATT
Found at i:63637820 original size:329 final size:329
Alignment explanation
Indices: 63637222--63637882 Score: 1295
Period size: 329 Copynumber: 2.0 Consensus size: 329
63637212 CTTTTTTTCT
63637222 ATTTGATAGTTGTTGCTTAGGAGGGCTTCATCTCTGTAGTTTTAGCTTATTAACTGTGAATTCTC
1 ATTTGATAGTTGTTGCTTAGGAGGGCTTCATCTCTGTAGTTTTAGCTTATTAACTGTGAATTCTC
63637287 CTAAAGTTTATTAAATTATTACATGGAAAATTGAAGGAGCTTGGGAACTGAAATAGGGTAAAGTA
66 CTAAAGTTTATTAAATTATTACATGGAAAATTGAAGGAGCTTGGGAACTGAAATAGGGTAAAGTA
63637352 GTAAAAAATGTTTGTGCCACTTTGTTCTAGAATGAAGAGGATGATGAAACACCATTCATGGTATG
131 GTAAAAAATGTTTGTGCCACTTTGTTCTAGAATGAAGAGGATGATGAAACACCATTCATGGTATG
*
63637417 GACCCACTGTTATAATATGGATTTGTTTTTACCCTATAAAGTGTTTCTCTTGATCCTAAGCTTTC
196 GACCCACTGTTATAATATGGATTTGTTTTCACCCTATAAAGTGTTTCTCTTGATCCTAAGCTTTC
*
63637482 CTGAAGTGGTTTCTCAATTGTAGTAACAATTGAACTTACATTGGTAAATTTGAAAAGTGTATGGG
261 CTGAAGTGGTTTCTCAATTGTAGTAACAATTGAACTTACATTGGTAAATTTGAAAAATGTATGGG
63637547 TTAA
326 TTAA
63637551 ATTTGATAGTTGTTGCTTAGGAGGGCTTCATCTCTGTAGTTTTAGCTTATTAACTGTGAATTCTC
1 ATTTGATAGTTGTTGCTTAGGAGGGCTTCATCTCTGTAGTTTTAGCTTATTAACTGTGAATTCTC
63637616 CTAAAGTTTATTAAATTATTACATGGAAAATTGAAGGAGCTTGGGAACTGAAATAGGGTAAAGTA
66 CTAAAGTTTATTAAATTATTACATGGAAAATTGAAGGAGCTTGGGAACTGAAATAGGGTAAAGTA
63637681 GTAAAAAATGTTTGTGCCACTTTGTTCTAGAATGAAGAGGATGATGAAACACCATTCATGGTATG
131 GTAAAAAATGTTTGTGCCACTTTGTTCTAGAATGAAGAGGATGATGAAACACCATTCATGGTATG
*
63637746 GACCCGCTGTTATAATATGGATTTGTTTTCACCCTATAAAGTGTTTCTCTTGATCCTAAGCTTTC
196 GACCCACTGTTATAATATGGATTTGTTTTCACCCTATAAAGTGTTTCTCTTGATCCTAAGCTTTC
63637811 CTGAAGTGGTTTCTCAATTGTAGTAACAATTGAACTTACATTGGTAAATTTGAAAAATGTATGGG
261 CTGAAGTGGTTTCTCAATTGTAGTAACAATTGAACTTACATTGGTAAATTTGAAAAATGTATGGG
63637876 TTAA
326 TTAA
63637880 ATT
1 ATT
63637883 GTTTGAAATA
Statistics
Matches: 329, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
329 329 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (329 bp):
ATTTGATAGTTGTTGCTTAGGAGGGCTTCATCTCTGTAGTTTTAGCTTATTAACTGTGAATTCTC
CTAAAGTTTATTAAATTATTACATGGAAAATTGAAGGAGCTTGGGAACTGAAATAGGGTAAAGTA
GTAAAAAATGTTTGTGCCACTTTGTTCTAGAATGAAGAGGATGATGAAACACCATTCATGGTATG
GACCCACTGTTATAATATGGATTTGTTTTCACCCTATAAAGTGTTTCTCTTGATCCTAAGCTTTC
CTGAAGTGGTTTCTCAATTGTAGTAACAATTGAACTTACATTGGTAAATTTGAAAAATGTATGGG
TTAA
Found at i:63642522 original size:92 final size:91
Alignment explanation
Indices: 63642350--63642558 Score: 251
Period size: 92 Copynumber: 2.3 Consensus size: 91
63642340 TTGATTTTAC
* * * *
63642350 TAAATTGATATAAGAACATTGTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAC
1 TAAATTCATATAAGAAAATT-TATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAC
* * *
63642415 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAAAATTAATTATTTTAAATTATA
*
63642442 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
*
63642506 TATGTAAGAATT-ATTATTTTAAATTATA
64 CATGTAA-AATTAATTATTTTAAATTATA
* * * *
63642534 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
63642559 GTTATAATTA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 26 0.26
92 71 0.70
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTACA
TGTAAAATTAATTATTTTAAATTATA
Found at i:63642712 original size:120 final size:120
Alignment explanation
Indices: 63642574--63642986 Score: 697
Period size: 120 Copynumber: 3.4 Consensus size: 120
63642564 AATTATTTTA
* * *
63642574 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-AT
* * *
63642636 TTTATAGTATCATATATTATGATTGGAGTAAATTCATATAAGAATATTAATTTTTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63642694 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
* *
63642759 ACAGTATCATATATTATTATTTGAGTAAATTCATGTAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63642814 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
63642879 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAA
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63642934 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
63642987 TAAATATGAT
Statistics
Matches: 279, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
119 6 0.02
120 271 0.97
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:63642734 original size:15 final size:15
Alignment explanation
Indices: 63642699--63642750 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
63642689 TTAAGAATTT
*
63642699 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63642713 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63642727 TATTTAATAATAAT-
1 TATTTAATTATAATA
63642741 TATGTTAATT
1 TAT-TTAATT
63642751 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63642854 original size:15 final size:15
Alignment explanation
Indices: 63642819--63642870 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
63642809 TTAAGAATTT
*
63642819 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63642833 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63642847 TATTTAATAATAAT-
1 TATTTAATTATAATA
63642861 TATGTTAATT
1 TAT-TTAATT
63642871 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63642969 original size:16 final size:16
Alignment explanation
Indices: 63642948--63642989 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63642938 TTATTAAATT
*
63642948 ATATATTTTAATTATA
1 ATATATTTTAATAATA
63642964 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
63642979 AT-TATGTTTAA
1 ATATAT-TTTAA
63642990 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:63642974 original size:15 final size:15
Alignment explanation
Indices: 63642939--63642980 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63642929 TTAAAAATTT
*
63642939 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63642953 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63642967 TATTTAATAATAAT
1 TATTTAATTATAAT
63642981 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63643120 original size:18 final size:17
Alignment explanation
Indices: 63643092--63643126 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63643082 ATTATTAAGA
*
63643092 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
63643109 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
63643127 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:63643212 original size:157 final size:157
Alignment explanation
Indices: 63642923--63643239 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
63642913 ATAAGAATAT
*
63642923 TAATTATTAAAAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
63642988 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
63643053 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
63643080 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
63643145 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAATAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
63643210 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
63643237 TAA
1 TAA
63643240 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:63645189 original size:27 final size:27
Alignment explanation
Indices: 63645158--63645211 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
63645148 TTTATCGAGG
* *
63645158 TTATTAGTTTATTGATAAATGAATATT
1 TTATTAATTTATCGATAAATGAATATT
*
63645185 TTATTAATTTATCGATAAATTAATATT
1 TTATTAATTTATCGATAAATGAATATT
63645212 AATTTAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (27 bp):
TTATTAATTTATCGATAAATGAATATT
Found at i:63658756 original size:21 final size:21
Alignment explanation
Indices: 63658718--63658759 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63658708 TACACGGACA
**
63658718 ATACGAAATCAATAAAAAAAT
1 ATACGAAAGAAATAAAAAAAT
*
63658739 ATACGAAAGAAATCAAAAAAT
1 ATACGAAAGAAATAAAAAAAT
63658760 TTTAAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17
Consensus pattern (21 bp):
ATACGAAAGAAATAAAAAAAT
Found at i:63659479 original size:20 final size:21
Alignment explanation
Indices: 63659441--63659480 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
63659431 GTTTTTATAT
63659441 TATTTTCATATATTATTATTA
1 TATTTTCATATATTATTATTA
63659462 TATTTT-ATA-ATGTATTATT
1 TATTTTCATATAT-TATTATT
63659481 CTTTAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 10 0.56
21 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TATTTTCATATATTATTATTA
Found at i:63659789 original size:36 final size:35
Alignment explanation
Indices: 63659731--63659798 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
63659721 ATATATAATT
*
63659731 TTAAAACCTATTTTTATTTATACATGATTTGTATC
1 TTAAAACCTATTTTTATATATACATGATTTGTATC
* *
63659766 TTAAAACCCTA-TTTTATCATATACGTGGTTTGT
1 TTAAAA-CCTATTTTTAT-ATATACATGATTTGT
63659799 CTCAACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 12 0.43
36 16 0.57
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (35 bp):
TTAAAACCTATTTTTATATATACATGATTTGTATC
Found at i:63661630 original size:25 final size:24
Alignment explanation
Indices: 63661593--63661645 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
63661583 CCTATTTATG
63661593 GCTCTTATGAGCTTCCCGATAATTA
1 GCTCTTATGAGCTTCCCGAT-ATTA
63661618 GCTCTTCAT-AGCTTCCCGATATTA
1 GCTCTT-ATGAGCTTCCCGATATTA
63661642 GCTC
1 GCTC
63661646 GCTTGAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 8 0.30
25 17 0.63
26 2 0.07
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATATTA
Found at i:63663853 original size:19 final size:18
Alignment explanation
Indices: 63663823--63663863 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
63663813 AGAAGAGAAC
* *
63663823 AGAAAAAAAATAGAAGAG
1 AGAAAAAAAATAAAAAAG
63663841 AGAAAAGAAAATAAAAAAG
1 AGAAAA-AAAATAAAAAAG
63663860 AGAA
1 AGAA
63663864 TACAATAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (18 bp):
AGAAAAAAAATAAAAAAG
Found at i:63669799 original size:2 final size:2
Alignment explanation
Indices: 63669792--63669835 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
63669782 TTTTGGGAAA
63669792 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63669834 AG
1 AG
63669836 GAAGATGCAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63671679 original size:18 final size:18
Alignment explanation
Indices: 63671656--63671690 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63671646 TTTTAAATGT
63671656 TATTTTAATAAGTAATAA
1 TATTTTAATAAGTAATAA
* *
63671674 TATTTTATTAATTAATA
1 TATTTTAATAAGTAATA
63671691 TTATAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTTTAATAAGTAATAA
Found at i:63672048 original size:28 final size:28
Alignment explanation
Indices: 63672008--63672063 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63671998 TATTAGAAGT
63672008 GTGAAAAATGAATAAAAATGAATGGGGA
1 GTGAAAAATGAATAAAAATGAATGGGGA
*
63672036 GTGAAAAATGAATAAAAATGGATGGGGA
1 GTGAAAAATGAATAAAAATGAATGGGGA
63672064 AATAGAGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.18
Consensus pattern (28 bp):
GTGAAAAATGAATAAAAATGAATGGGGA
Found at i:63685447 original size:42 final size:42
Alignment explanation
Indices: 63685399--63685493 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
63685389 CTCGGTATCT
* *
63685399 CACACTTAGTGCCCGTTATTCAACATTATCATTTTAATTTCG
1 CACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCG
* *
63685441 CACACTTAGTGCCCATTATTCAACATCGTCATTTTAGTTTCG
1 CACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCG
63685483 CACACTTAGTG
1 CACACTTAGTG
63685494 TCGTTCATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (42 bp):
CACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCG
Found at i:63687204 original size:17 final size:17
Alignment explanation
Indices: 63687184--63687216 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63687174 TTTTAATTAG
63687184 TGAAATTTGTGATTTAT
1 TGAAATTTGTGATTTAT
*
63687201 TGAATTTTGTGATTTA
1 TGAAATTTGTGATTTA
63687217 AAAAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (17 bp):
TGAAATTTGTGATTTAT
Found at i:63688494 original size:46 final size:46
Alignment explanation
Indices: 63688441--63688624 Score: 314
Period size: 46 Copynumber: 4.0 Consensus size: 46
63688431 CCATGGAAAA
* *
63688441 TTGTGAAAAGTAGGTCTGGTGTTTCAGTGAAGAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
63688487 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
63688533 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* * *
63688579 TTGTGAAAAGTAGGTATGGTATTTCCGTAAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
63688625 CTATATCAAT
Statistics
Matches: 131, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 131 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:63693966 original size:21 final size:21
Alignment explanation
Indices: 63693942--63694074 Score: 110
Period size: 21 Copynumber: 6.3 Consensus size: 21
63693932 GTGTTTTTCT
*
63693942 TTCTGTTTAGCTCTTTCGAGC
1 TTCTGTTCAGCTCTTTCGAGC
* * *
63693963 TTCTGTTTAGTTCTTACGAGC
1 TTCTGTTCAGCTCTTTCGAGC
* **
63693984 TTCTGTTCAACTCTTAT-GAAT
1 TTCTGTTCAGCTCTT-TCGAGC
* *
63694005 TTTTGTTCAGCTCTTCCGAGC
1 TTCTGTTCAGCTCTTTCGAGC
* *
63694026 TGT-TGTTTAGCTCTTACGAGC
1 T-TCTGTTCAGCTCTTTCGAGC
*
63694047 TTCTGTTCAACTCTTAT-GAGC
1 TTCTGTTCAGCTCTT-TCGAGC
63694068 TTCTGTT
1 TTCTGTT
63694075 GACGTGTCTG
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
20 1 0.01
21 87 0.98
22 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTTCGAGC
Found at i:63694033 original size:63 final size:63
Alignment explanation
Indices: 63693945--63694065 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 63
63693935 TTTTTCTTTC
* * *
63693945 TGTTTAGCTCTTTCGAGCTTCTGTTTAGTTCTTACGAGCTTCTGTTCAACTCTTATGAATTTT
1 TGTTCAGCTCTTCCGAGCTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAATTTT
63694008 TGTTCAGCTCTTCCGAGCTGT-TGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGA
1 TGTTCAGCTCTTCCGAGCT-TCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGA
63694066 GCTTCTGTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.45
Consensus pattern (63 bp):
TGTTCAGCTCTTCCGAGCTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAATTTT
Found at i:63694054 original size:42 final size:42
Alignment explanation
Indices: 63693942--63694074 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 42
63693932 GTGTTTTTCT
* * *
63693942 TTCTGTTTAGCTCTTTCGAGCTTCTGTTTAGTTCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGCTTCTGTTCAGCTCTTACGAGC
* * * ** * *
63693984 TTCTGTTCAACTCTTATGAATTTTTGTTCAGCTCTTCCGAGC
1 TTCTGTTTAGCTCTTACGAGCTTCTGTTCAGCTCTTACGAGC
* *
63694026 TGT-TGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAGC
1 T-TCTGTTTAGCTCTTACGAGCTTCTGTTCAGCTCTTACGAGC
63694068 TTCTGTT
1 TTCTGTT
63694075 GACGTGTCTG
Statistics
Matches: 70, Mismatches: 19, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
41 1 0.01
42 68 0.97
43 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (42 bp):
TTCTGTTTAGCTCTTACGAGCTTCTGTTCAGCTCTTACGAGC
Found at i:63699208 original size:62 final size:62
Alignment explanation
Indices: 63699111--63699241 Score: 244
Period size: 62 Copynumber: 2.1 Consensus size: 62
63699101 CAAGTGTGAC
63699111 ATGTTGAGATAATAAGGTTATCGATGTTGAATTTATAGGAAATATGTTCAAGTATGCTAACA
1 ATGTTGAGATAATAAGGTTATCGATGTTGAATTTATAGGAAATATGTTCAAGTATGCTAACA
*
63699173 ATGTTGAGATAATAAGGTTATCGATGTTGAATTTATATGAAATATGTTCAAGTATGCTAACA
1 ATGTTGAGATAATAAGGTTATCGATGTTGAATTTATAGGAAATATGTTCAAGTATGCTAACA
63699235 AGTGTTG
1 A-TGTTG
63699242 TTGTTTGATG
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 62 0.93
63 5 0.07
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.37
Consensus pattern (62 bp):
ATGTTGAGATAATAAGGTTATCGATGTTGAATTTATAGGAAATATGTTCAAGTATGCTAACA
Found at i:63700064 original size:23 final size:23
Alignment explanation
Indices: 63700038--63700081 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
63700028 TTGGTAAACT
*
63700038 TTAGGTATAAATATGCATATAAG
1 TTAGGTATAAATATGAATATAAG
* *
63700061 TTAGTTATACATATGAATATA
1 TTAGGTATAAATATGAATATA
63700082 TTGAATACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.39
Consensus pattern (23 bp):
TTAGGTATAAATATGAATATAAG
Found at i:63702182 original size:43 final size:43
Alignment explanation
Indices: 63702147--63702313 Score: 171
Period size: 43 Copynumber: 3.8 Consensus size: 43
63702137 TCTTGCATGT
*
63702147 AATCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACGTA
1 AATCAAATA-CAATGCCAATGTCCCAGACAGGGTCTTACACGTA
* * *
63702191 AATCATATACGAA-GCCAATGTCCCAGACATGATCTTACACGTA
1 AATCAAATAC-AATGCCAATGTCCCAGACAGGGTCTTACACGTA
* * * *
63702234 AATCATATACGATGCCAATGTCCCAAACATGGTCTTACACGTA
1 AATCAAATACAATGCCAATGTCCCAGACAGGGTCTTACACGTA
*
63702277 GATCTCAAAT-CAATGCC-ATCGTCCCAGAC-GTGGTCTT
1 -A-ATCAAATACAATGCCAAT-GTCCCAGACAG-GGTCTT
63702314 TCACAATATT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
42 1 0.01
43 68 0.65
44 31 0.30
45 5 0.05
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
AATCAAATACAATGCCAATGTCCCAGACAGGGTCTTACACGTA
Found at i:63709844 original size:43 final size:43
Alignment explanation
Indices: 63709778--63709938 Score: 211
Period size: 43 Copynumber: 3.7 Consensus size: 43
63709768 AGATCTTACA
* * *
63709778 ATGCCTATGTCCCAGACGA-GGTCTTGCATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGAC-ATGGTCTTGCACGTAAATCATATA-CG
* *
63709821 ATGCCACTGTCCTAGACATGGTC-TGACACGTAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTG-CACGTAAATCATATACG
*
63709864 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTGCACGTAAATCATATACG
*
63709907 ATGCCAATGTCCCAGACATGGTCTTACACGTA
1 ATGCCAATGTCCCAGACATGGTCTTGCACGTA
63709939 GATCTCAAAT
Statistics
Matches: 106, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
42 3 0.03
43 94 0.89
44 9 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTGCACGTAAATCATATACG
Found at i:63712196 original size:19 final size:21
Alignment explanation
Indices: 63712172--63712214 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
63712162 GCACCTAAGA
63712172 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
63712191 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
63712212 TGA
1 TGA
63712215 ATTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:63722970 original size:17 final size:16
Alignment explanation
Indices: 63722935--63722973 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
63722925 TAATATATAA
* *
63722935 ATAAATTTAAAATTTT
1 ATAAATTTAAAAATAT
63722951 ATAAATTTAAAAAATAT
1 ATAAATTT-AAAAATAT
63722968 ATAAAT
1 ATAAAT
63722974 ATATAAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATAAATTTAAAAATAT
Found at i:63723175 original size:18 final size:19
Alignment explanation
Indices: 63723140--63723178 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63723130 AGTACATATT
63723140 TTTTAAAAAAATTATAAAA
1 TTTTAAAAAAATTATAAAA
* *
63723159 TTTTGAAAATATT-TAAAA
1 TTTTAAAAAAATTATAAAA
63723177 TT
1 TT
63723179 CGAAGAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTTAAAAAAATTATAAAA
Found at i:63725189 original size:65 final size:67
Alignment explanation
Indices: 63725074--63725205 Score: 164
Period size: 67 Copynumber: 2.0 Consensus size: 67
63725064 AGATGCACGA
63725074 GTCTGTAGGTGTTAAATATATATATGCGTGAGATTGGAGTCATAAATAT-A-ATATATATGAGTG
1 GTCTGTAGGTGTTAAATATATATATGCGTGAGATTGGAGTCATAAATATAATATATATATGAGTG
63725137 GG
66 GG
* * * ***
63725139 GTCTGTTGGTGTTAAACATATATATATGCGTGAGTTTGG-GT-TTTTTTATAATATATATATGAG
1 GTCTGTAGGTGTT-AA-ATATATATATGCGTGAGATTGGAGTCATAAATATAATATATATATGAG
63725202 TGGG
64 TGGG
63725206 TTTATATATA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
65 16 0.28
66 5 0.09
67 36 0.63
ACGTcount: A:0.30, C:0.05, G:0.26, T:0.40
Consensus pattern (67 bp):
GTCTGTAGGTGTTAAATATATATATGCGTGAGATTGGAGTCATAAATATAATATATATATGAGTG
GG
Found at i:63727067 original size:8 final size:8
Alignment explanation
Indices: 63727054--63727084 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
63727044 CATTTAGGCC
63727054 TTTTAAAA
1 TTTTAAAA
63727062 TTTTAAAA
1 TTTTAAAA
63727070 TTTTAAAA
1 TTTTAAAA
63727078 TTTTAAA
1 TTTTAAA
63727085 TTAGTGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:63744266 original size:27 final size:27
Alignment explanation
Indices: 63744228--63744284 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
63744218 TAACACTCAC
63744228 TCAACTTTGATGCAGCTGAGAAAACAA
1 TCAACTTTGATGCAGCTGAGAAAACAA
63744255 TCAACTTTGATGCAGCTGAGAAAACAA
1 TCAACTTTGATGCAGCTGAGAAAACAA
63744282 TCA
1 TCA
63744285 CTCTGGTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
TCAACTTTGATGCAGCTGAGAAAACAA
Found at i:63749205 original size:26 final size:27
Alignment explanation
Indices: 63749168--63749223 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
63749158 CTTAAATAAA
*
63749168 TTTATTTAACTTTACTCGATTTG-AAT
1 TTTATTTAACTTGACTCGATTTGTAAT
* * *
63749194 TTTATTTCACTTGATTCGGTTTGTAAT
1 TTTATTTAACTTGACTCGATTTGTAAT
63749221 TTT
1 TTT
63749224 TTAAAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (27 bp):
TTTATTTAACTTGACTCGATTTGTAAT
Found at i:63755967 original size:25 final size:25
Alignment explanation
Indices: 63755933--63755983 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
63755923 ACCAATACTT
63755933 AGCTCACATGAGCTTCCCGTTATTC
1 AGCTCACATGAGCTTCCCGTTATTC
*
63755958 AGCTCGCATGAGCTTCCCGTTATTC
1 AGCTCACATGAGCTTCCCGTTATTC
63755983 A
1 A
63755984 TCTGGGAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (25 bp):
AGCTCACATGAGCTTCCCGTTATTC
Found at i:63755995 original size:25 final size:25
Alignment explanation
Indices: 63755933--63755997 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
63755923 ACCAATACTT
* *
63755933 AGCTCACATGAGCTTCCCGTTATTC
1 AGCTCGCAAGAGCTTCCCGTTATTC
*
63755958 AGCTCGCATGAGCTTCCCGTTATTC
1 AGCTCGCAAGAGCTTCCCGTTATTC
* * *
63755983 ATCTGGGAAGAGCTT
1 AGCTCGCAAGAGCTT
63755998 ACTGTTTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (25 bp):
AGCTCGCAAGAGCTTCCCGTTATTC
Found at i:63760905 original size:27 final size:27
Alignment explanation
Indices: 63760875--63760984 Score: 87
Period size: 27 Copynumber: 4.0 Consensus size: 27
63760865 CAACTACTAT
*
63760875 TACAACAACAACAACAACAACAATGGC
1 TACAACAACAACTACAACAACAATGGC
* * *
63760902 TACACTCTCAGCAGCTACAACAACAATGGC
1 TACA---ACAACAACTACAACAACAATGGC
* ** *
63760932 TACAGCGGGC-ACTACAACACCAATGGC
1 TACAAC-AACAACTACAACAACAATGGC
**
63760959 TACAATGACAACTACAACAACAATGG
1 TACAACAACAACTACAACAACAATGG
63760985 GTATGAGACA
Statistics
Matches: 66, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
26 2 0.03
27 39 0.59
28 2 0.03
30 23 0.35
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.13
Consensus pattern (27 bp):
TACAACAACAACTACAACAACAATGGC
Found at i:63763319 original size:43 final size:42
Alignment explanation
Indices: 63763211--63763395 Score: 165
Period size: 42 Copynumber: 4.4 Consensus size: 42
63763201 TTACAAACAA
** * ** **
63763211 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTCTT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTCAC
* * * *
63763253 AAGCGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTT-TCAC
* *
63763296 AAACGCCACTAAAGAACATGACCTTTAGCGACGCTTCTTTAAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTT-TTTCAC
* * * ** *
63763339 AAACGCTGCAAAAGAACA-AACCTTTAGCGACGCTTGTAGCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTT-TTTCAC
63763381 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
63763396 CATAAGCTTT
Statistics
Matches: 115, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 62 0.54
43 51 0.44
44 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTCAC
Found at i:63763406 original size:42 final size:41
Alignment explanation
Indices: 63763256--63763395 Score: 136
Period size: 43 Copynumber: 3.3 Consensus size: 41
63763246 TTTTCTTAAG
* * * *
63763256 CGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTCACAAA
1 CGCCGCTAAAGAACAA-ACCTTTAGCGACGCTTCT-TCAAAAA
* * *
63763299 CGCCACTAAAGAACATGACCTTTAGCGACGCTTCTTTAACAAA
1 CGCCGCTAAAGAACA-AACCTTTAGCGACGCTTCTTCAA-AAA
* * * *
63763342 CGCTGCAAAAGAACAAACCTTTAGCGACGCTTGTAGCAAAAA
1 CGCCGCTAAAGAACAAACCTTTAGCGACGCTTCT-TCAAAAA
63763384 CGCCGCTAAAGA
1 CGCCGCTAAAGA
63763396 CATAAGCTTT
Statistics
Matches: 78, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 32 0.41
43 46 0.59
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (41 bp):
CGCCGCTAAAGAACAAACCTTTAGCGACGCTTCTTCAAAAA
Found at i:63764092 original size:16 final size:16
Alignment explanation
Indices: 63764067--63764134 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
63764057 TTTGGTTCGC
63764067 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
63764083 TGTGTTGGATTAGAGG
1 TGTATTGGATTAGAGG
63764099 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
63764115 TGTATTGGAATAGATG
1 TGTATTGGATTAGAGG
63764131 TGTA
1 TGTA
63764135 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:63764207 original size:44 final size:44
Alignment explanation
Indices: 63764148--63764249 Score: 204
Period size: 44 Copynumber: 2.3 Consensus size: 44
63764138 GCAAATCAAC
63764148 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
1 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
63764192 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
1 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
63764236 TGTTTGGTTGAATG
1 TGTTTGGTTGAATG
63764250 GAATAGAGGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (44 bp):
TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
Found at i:63764264 original size:39 final size:42
Alignment explanation
Indices: 63764148--63764266 Score: 172
Period size: 44 Copynumber: 2.8 Consensus size: 42
63764138 GCAAATCAAC
63764148 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
1 TGTTTGGTT--ATGTAATGGAATAGAGGCGTAATAGTAAAACTG
63764192 TGTTTGGTTGAATGTAATGGAATAGAGGCGTAATAGTAAAACTG
1 TGTTTGGTT--ATGTAATGGAATAGAGGCGTAATAGTAAAACTG
*
63764236 TGTTTGG-T-TG-AATGGAATAGAGGTGTAATAG
1 TGTTTGGTTATGTAATGGAATAGAGGCGTAATAG
63764267 CATAATGGAG
Statistics
Matches: 74, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
39 20 0.27
40 2 0.03
43 1 0.01
44 51 0.69
ACGTcount: A:0.33, C:0.03, G:0.31, T:0.33
Consensus pattern (42 bp):
TGTTTGGTTATGTAATGGAATAGAGGCGTAATAGTAAAACTG
Found at i:63764436 original size:18 final size:17
Alignment explanation
Indices: 63764415--63764449 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63764405 TTATTATTTA
*
63764415 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
63764433 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63764450 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63764443 original size:28 final size:27
Alignment explanation
Indices: 63764373--63764445 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
63764363 TTTATTATCA
*
63764373 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
63764401 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
63764428 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
63764446 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:63764583 original size:18 final size:17
Alignment explanation
Indices: 63764562--63764596 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63764552 TTATTATTAA
*
63764562 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
63764580 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
63764597 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:63764608 original size:147 final size:149
Alignment explanation
Indices: 63764334--63764608 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
63764324 ATGATTATTG
*
63764334 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTAATTATCAAAAATAAATAATTTAATCATATTTAA
*
63764399 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
63764464 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
* *
63764483 TTATT-TTATTTAAATTTTAATAAGATTATTAATT-TCAATAATAAATAATTTACTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTAATTATCAAAAATAAATAATTTAATCATATTTAA
63764546 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
63764609 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 89 0.73
148 28 0.23
149 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.48
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTAATTATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:63764704 original size:18 final size:17
Alignment explanation
Indices: 63764664--63764716 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
63764654 AAATATAAAT
63764664 TAAAATA-ATAA-TT-A
1 TAAAATATATAATTTAA
*
63764678 TTAAATATAT--TTTAA
1 TAAAATATATAATTTAA
63764693 TTAAAATATATAATTTAA
1 -TAAAATATATAATTTAA
63764711 TAAAAT
1 TAAAAT
63764717 TCTAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.26
15 3 0.10
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:63764774 original size:60 final size:59
Alignment explanation
Indices: 63764590--63764776 Score: 157
Period size: 60 Copynumber: 3.1 Consensus size: 59
63764580 ATATAATTTA
*
63764590 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTC-TAATAA-TAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * ** * * * ** * * * *
63764651 GTAAAATAT-AAATTAA-AATAATAATTAT-TAAATATATTTTAATTAAAATATATAAT-TT
1 ATAAAAT-TCTAA-TAATAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
63764709 AATAAAATTCTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAATTCTAATAAT-AATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
63764770 ATAAAAT
1 ATAAAAT
63764777 ATAATTTGAA
Statistics
Matches: 91, Mismatches: 26, Indels: 19
0.67 0.19 0.14
Matches are distributed among these distances:
58 5 0.05
59 37 0.41
60 38 0.42
61 10 0.11
62 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (59 bp):
ATAAAATTCTAATAATAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:63764775 original size:119 final size:120
Alignment explanation
Indices: 63764542--63764836 Score: 495
Period size: 119 Copynumber: 2.5 Consensus size: 120
63764532 TTACTCATAT
*
63764542 TTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAA-ATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
63764607 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
63764663 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAATC
1 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
*
63764727 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAT
66 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
* *
63764782 TTGAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTAAAATAA-TAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
63764837 TAAAATAATT
Statistics
Matches: 166, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
119 108 0.65
120 53 0.32
121 5 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
Found at i:63772248 original size:112 final size:112
Alignment explanation
Indices: 63772113--63772333 Score: 284
Period size: 113 Copynumber: 2.0 Consensus size: 112
63772103 AAAAATGTCG
* * * * * * *
63772113 TAAAAAATTATTTTATTTAGAATAAAACGATATTGTTTTGCTAT-AT-AAAATGACGTTAATTTT
1 TAAAAAATTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCT-ATTTT
* *
63772176 TTAAACTAAAATTACTTTTTGTGGCGTTTTTTATAAAAATGCCGCTAT
65 TTAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAT
* * *
63772224 TAAAAAATTTATTTCATTCGGAATAAAACGACACTATTTTGCTATGCTAAAAATCTCGCTATTTT
1 TAAAAAA-TTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCTATTTT
* *
63772289 TTAAAGTAAAACTATTTTTTGTGGCGTTTTTTATAAAAACGCCGC
65 TTAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGC
63772334 AAAAATTATT
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
111 7 0.08
112 31 0.33
113 47 0.51
114 8 0.09
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (112 bp):
TAAAAAATTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCTATTTTT
TAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAT
Found at i:63772637 original size:7 final size:7
Alignment explanation
Indices: 63772625--63772672 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
63772615 ACCCTTGAAT
63772625 CCCTAAA
1 CCCTAAA
63772632 CCCTAAA
1 CCCTAAA
63772639 CCCTAAA
1 CCCTAAA
*
63772646 TCCTAAA
1 CCCTAAA
**
63772653 CTATAAA
1 CCCTAAA
**
63772660 CTTTAAA
1 CCCTAAA
63772667 CCCTAA
1 CCCTAA
63772673 CCCGACCCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (7 bp):
CCCTAAA
Found at i:63772685 original size:62 final size:60
Alignment explanation
Indices: 63772601--63772803 Score: 239
Period size: 55 Copynumber: 3.5 Consensus size: 60
63772591 CTAATTAATC
63772601 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATCCTAAACTATAAACTT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAAT--TAAACTATAAACTT
* *
63772663 TAAACCCTAACCCGACCCTTGAATCCATAAACCCTAAA--C---ATTAAACTCTAAACTT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACTT
* * *
63772718 TAAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAA--ACAC--T-AACTCT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACT-T
*
63772774 T-AACCCATAACCTGACCCTTGAATCCCTAA
1 TAAACCC-TAACCCGACCCTTGAATCCCTAA
63772804 TTCCTAACCC
Statistics
Matches: 127, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
55 57 0.45
56 25 0.20
57 3 0.02
58 3 0.02
60 2 0.02
62 37 0.29
ACGTcount: A:0.37, C:0.36, G:0.04, T:0.23
Consensus pattern (60 bp):
TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACTT
Found at i:63772699 original size:27 final size:27
Alignment explanation
Indices: 63772663--63772757 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 27
63772653 CTATAAACTT
63772663 TAAACCCTAACCCGACCCTTGAATCCA
1 TAAACCCTAACCCGACCCTTGAATCCA
*** ** * **
63772690 TAAACCCTAAACATTAAACTCT-AAACTT
1 TAAACCCT-AACCCGACCCT-TGAATCCA
*
63772718 TAAACCCTAACCCGACCCTTGAATCCC
1 TAAACCCTAACCCGACCCTTGAATCCA
*
63772745 TAAATCCTAACCC
1 TAAACCCTAACCC
63772758 CTAAAACACT
Statistics
Matches: 48, Mismatches: 17, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 17 0.35
29 1 0.02
ACGTcount: A:0.37, C:0.37, G:0.04, T:0.22
Consensus pattern (27 bp):
TAAACCCTAACCCGACCCTTGAATCCA
Found at i:63772713 original size:14 final size:14
Alignment explanation
Indices: 63772690--63772727 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
63772680 CTTGAATCCA
63772690 TAAACCCTAAACAT
1 TAAACCCTAAACAT
* *
63772704 TAAACTCTAAACTT
1 TAAACCCTAAACAT
63772718 TAAACCCTAA
1 TAAACCCTAA
63772728 CCCGACCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAACCCTAAACAT
Found at i:63772798 original size:56 final size:54
Alignment explanation
Indices: 63772658--63772842 Score: 210
Period size: 56 Copynumber: 3.3 Consensus size: 54
63772648 CTAAACTATA
* * * * * *
63772658 AACTTTAAACCCTAACCCGACCCTTGAATCCATAAACCCTAA-ACATTAAACTCT
1 AACTTT-AACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
63772712 AAACTTTAAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
1 -AACTTT-AACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
* * * *
63772768 AACTCTTAACCCATAACCTGACCCTTGAATCCCTAATTCCTAACCCCTAGATCACT
1 AACT-TTAACCC-TAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
63772824 AACTATTAACCCCTAACCC
1 AACT-TTAA-CCCTAACCC
63772843 CTAACTACTA
Statistics
Matches: 114, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
55 49 0.43
56 62 0.54
57 3 0.03
ACGTcount: A:0.36, C:0.37, G:0.04, T:0.24
Consensus pattern (54 bp):
AACTTTAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
Found at i:63772848 original size:21 final size:21
Alignment explanation
Indices: 63772807--63772860 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
63772797 TCCCTAATTC
*
63772807 CTAACCCCTAGATCACTAACTA
1 CTAACCCCTA-ACCACTAACTA
* *
63772829 TTAACCCCTAACCCCTAACTA
1 CTAACCCCTAACCACTAACTA
63772850 CTAACCCCTAA
1 CTAACCCCTAA
63772861 ACCTTAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.35, C:0.41, G:0.02, T:0.22
Consensus pattern (21 bp):
CTAACCCCTAACCACTAACTA
Found at i:63773185 original size:8 final size:7
Alignment explanation
Indices: 63773113--63773190 Score: 52
Period size: 7 Copynumber: 10.9 Consensus size: 7
63773103 GTAGTTAATC
63773113 TAAACCT
1 TAAACCT
*
63773120 TAAACCA
1 TAAACCT
63773127 TAAA-CT
1 TAAACCT
63773133 TAAACCCT
1 TAAA-CCT
* *
63773141 AAAACCC
1 TAAACCT
*
63773148 TAAACTCA
1 TAAAC-CT
63773156 TAAACCT
1 TAAACCT
* *
63773163 TTAACACA
1 TAAAC-CT
63773171 T-AACCTT
1 TAAACC-T
63773178 TAAACCT
1 TAAACCT
63773185 TAAACC
1 TAAACC
63773191 CCAACTTTTG
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
6 6 0.11
7 32 0.58
8 17 0.31
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (7 bp):
TAAACCT
Found at i:63773570 original size:114 final size:114
Alignment explanation
Indices: 63773402--63773925 Score: 791
Period size: 114 Copynumber: 4.6 Consensus size: 114
63773392 AAAAAACTTT
* * * * ** *
63773402 AAAATGCCGCTAAATCCCCGAAAGCTTAG-AAACGGCACCGTTGGGCTTATGTTTTTTTGCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* * * *
63773466 CTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
* * * * * *
63773515 AAAACACCGCTAAATCCTCGAGAGCTCATAAAACGGCGTTGTTGGGCTTAGGTTTTTTTTCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* *
63773580 CTTTCCCAAAAACGCCACAAAAGACCTGAGCTTTAGCCGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
*
63773629 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGTG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* *
63773694 CTTTCCCAAAAACACCACTAAAGACCTGATCTTTAGCGGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
*
63773743 AAAACGCTGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
*
63773808 CTTTCCCAAAAACGCCACTAAAGACCTGATCTTTAGCGGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
* * *
63773857 AAAACGCTGCTAAATCCCCGAGAGCTCATAAAACAACGTCGTTGGGCTTAGG-TTTTTTGCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
63773921 CTTTC
66 CTTTC
63773926 TGGAAAACGC
Statistics
Matches: 377, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
113 40 0.11
114 337 0.89
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (114 bp):
AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
Found at i:63775031 original size:17 final size:17
Alignment explanation
Indices: 63774996--63775028 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
63774986 TACGATTTGG
63774996 TTGAGAAACTTATTTAA
1 TTGAGAAACTTATTTAA
63775013 TTGAGAAA-TTATTTAA
1 TTGAGAAACTTATTTAA
63775029 ATTAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (17 bp):
TTGAGAAACTTATTTAA
Found at i:63775952 original size:84 final size:84
Alignment explanation
Indices: 63775807--63775973 Score: 257
Period size: 84 Copynumber: 2.0 Consensus size: 84
63775797 TATGTTTTAT
* *
63775807 TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATGTTCAATATGG
1 TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATATCCAATATGG
63775872 TATTTGAACTATCAATATG
66 TATTTGAACTATCAATATG
* **
63775891 TATGGTACTTGGT-CTTTCATAAAATGTCAAATGT-AGTATTTGCACTTTGAAAATATCCAATAT
1 TATGGTACCT-GTACTTTCATAAAATGTCAAATGTGA-TACCTGCACTTTGAAAATATCCAATAT
63775954 GGTATTTGAACTATCAATAT
64 GGTATTTGAACTATCAATAT
63775974 ATGCTTTATT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
83 1 0.01
84 73 0.96
85 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (84 bp):
TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATATCCAATATGG
TATTTGAACTATCAATATG
Found at i:63788456 original size:6 final size:6
Alignment explanation
Indices: 63788445--63788483 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
63788435 GTCGAAACTT
63788445 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
1 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
63788484 ATAAAGAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.18, T:0.36
Consensus pattern (6 bp):
TTGCCC
Found at i:63793934 original size:97 final size:99
Alignment explanation
Indices: 63793759--63793957 Score: 244
Period size: 97 Copynumber: 2.0 Consensus size: 99
63793749 GGTTAGTTGC
* * * * *
63793759 ATTTCAATCAATTTTAGATTGGATTTTATTTAGAGGAGCTCTTGGGTTAAGTCAAATTTTAGGGG
1 ATTTCAATCAATTTTAGATTGGATTCTATCTAGAGGAGCTCGTGGGTCAAGTCAAATTTCAGGGG
* *
63793824 CGAACTTAGAAA-TTTTTTA-GGGCTAAAATTAA
66 CGAACTTAAAAATTTTTTTAGGGGCCAAAATTAA
* ** *
63793856 ATTTCAATCAATTTTAGATTGGATTCTATCTAGAAGTA-CTCGTGGGTCGGGTCAAA-TTCATGG
1 ATTTCAATCAATTTTAGATTGGATTCTATCTAG-AGGAGCTCGTGGGTCAAGTCAAATTTCAGGG
*
63793919 GCGAAGTTATAAAATTTTTTTAGGGGCCAAAATTAA
65 GCGAACTTA-AAAATTTTTTTAGGGGCCAAAATTAA
63793955 ATT
1 ATT
63793958 ATAATTTTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
96 13 0.15
97 48 0.56
98 10 0.12
99 15 0.17
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (99 bp):
ATTTCAATCAATTTTAGATTGGATTCTATCTAGAGGAGCTCGTGGGTCAAGTCAAATTTCAGGGG
CGAACTTAAAAATTTTTTTAGGGGCCAAAATTAA
Found at i:63806013 original size:20 final size:20
Alignment explanation
Indices: 63805988--63806028 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63805978 CCAAACCTTA
63805988 AGATACAAACCCTCTCAAAG
1 AGATACAAACCCTCTCAAAG
63806008 AGATACAAACCCTCTCAAAG
1 AGATACAAACCCTCTCAAAG
63806028 A
1 A
63806029 AATAATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.29, G:0.10, T:0.15
Consensus pattern (20 bp):
AGATACAAACCCTCTCAAAG
Found at i:63808460 original size:23 final size:22
Alignment explanation
Indices: 63808417--63808460 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
63808407 TTCTAAGTCG
63808417 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
63808440 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
63808461 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:63808570 original size:45 final size:45
Alignment explanation
Indices: 63808506--63808593 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
63808496 ACAGATACTC
* * * *
63808506 GGTGGATTCAGCACGTAGCAACCACCTTATTAATCAATAATGTCT
1 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTCT
*
63808551 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGT
63808594 TCGGTTCACA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTCT
Found at i:63808670 original size:51 final size:50
Alignment explanation
Indices: 63808604--63808790 Score: 189
Period size: 51 Copynumber: 3.7 Consensus size: 50
63808594 TCGGTTCACA
* *
63808604 TAGTAGCATGCACATAGTACTACACATGTGACCATTACCATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATTCGATACACG
* * * * * * * *
63808655 TAATAGCCTGCACATAGAACTACACACATGATCGAAACTA-TCTGATACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATTC-GATACACG
* * * *
63808706 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATT-CGATACACG
*
63808756 TAGTAGCCTGCACATAGTACTATACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
63808791 CACTTTCACT
Statistics
Matches: 106, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.37
51 63 0.59
52 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGATACACG
Found at i:63814933 original size:20 final size:20
Alignment explanation
Indices: 63814904--63814952 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
63814894 TTATTATTTA
*
63814904 AATTAATCTCT-AATCTTAAT
1 AATTATTCTCTAAAT-TTAAT
63814924 AATTATTCTCTCTAAATTTAAT
1 AATTA-T-TCTCTAAATTTAAT
63814946 AATTATT
1 AATTATT
63814953 TTCATCTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 6 0.24
21 1 0.04
22 15 0.60
23 3 0.12
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTATTCTCTAAATTTAAT
Found at i:63814938 original size:22 final size:22
Alignment explanation
Indices: 63814910--63814952 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
63814900 TTTAAATTAA
63814910 TCTCT-AATCTTAATAATTATTC
1 TCTCTAAAT-TTAATAATTATTC
63814932 TCTCTAAATTTAATAATTATT
1 TCTCTAAATTTAATAATTATT
63814953 TTCATCTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (22 bp):
TCTCTAAATTTAATAATTATTC
Found at i:63820952 original size:7 final size:7
Alignment explanation
Indices: 63820936--63820980 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
63820926 TCACATTTTG
63820936 AAAT-TC
1 AAATATC
63820942 AAATATC
1 AAATATC
63820949 AAATATC
1 AAATATC
63820956 AAATATC
1 AAATATC
*
63820963 AAATATA
1 AAATATC
63820970 AAATATC
1 AAATATC
63820977 AAAT
1 AAAT
63820981 TTTAAAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 4 0.11
7 32 0.89
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATATC
Found at i:63821781 original size:50 final size:50
Alignment explanation
Indices: 63821666--63821858 Score: 244
Period size: 50 Copynumber: 3.8 Consensus size: 50
63821656 GATAATAACA
* * ** *
63821666 TGCCAAAGCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGA-CCTCTCATCTCGG
* * **
63821717 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATCTCGG
* *
63821767 TGCCAACGCCATGTCCCATACATGGTCTTACATAGGG-CTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA-AGGGACCTCTCATCTCGG
* *
63821817 TGCTAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGACCTCT
63821859 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 3 0.02
50 84 0.68
51 36 0.29
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATCTCGG
Found at i:63821840 original size:100 final size:100
Alignment explanation
Indices: 63821666--63821858 Score: 271
Period size: 100 Copynumber: 1.9 Consensus size: 100
63821656 GATAATAACA
* * * *
63821666 TGCCAAAGCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATATCGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACAAGGGA-CTTCTCATATCGGTGCCAACGCCATGT
*
63821731 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
63821767 TGCCAACGCCATGTCCCATACATGGTCTTACATAGGG-CTTCTCATCTCGGTGCTAACGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACA-AGGGACTTCTCATATCGGTGCCAACGCCATGT
*
63821831 CCCAGACATGGTCTTACATGGGACCTCT
65 CCCAGACATGGTCTTACAGGGGACCTCT
63821859 TTACCCAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 48 0.59
101 30 0.37
102 3 0.04
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (100 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACAAGGGACTTCTCATATCGGTGCCAACGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:63826890 original size:100 final size:103
Alignment explanation
Indices: 63826714--63826963 Score: 344
Period size: 100 Copynumber: 2.4 Consensus size: 103
63826704 TGGTAAAAAC
** *
63826714 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCCATGCCATG
*
63826779 TCCCAGACATGGTCTTACGGGGGACCTCTC-ATCTC-GG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCGATCTCAGG
* * *
63826816 -TGCCAACGCCATGTCCTAGACATGGCCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
*
63826880 CCTAGACATGGTCTTACAGGGGACCTCTCGTGATCTCAAGG
66 CCCAGACATGGTCTTACAGGGGACCTCTC--GATCTC-AGG
* * *
63826921 ATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
63826964 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
100 51 0.40
101 34 0.26
103 5 0.04
105 2 0.02
106 37 0.29
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCGATCTCAGG
Found at i:63826931 original size:56 final size:50
Alignment explanation
Indices: 63826715--63826963 Score: 291
Period size: 50 Copynumber: 4.8 Consensus size: 50
63826705 GGTAAAAACA
* * ** *
63826715 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
* *
63826766 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
63826816 TGCCAACGCCATGTCCTAGACATGGCCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
63826866 TGCCCATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCGTGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATCTC--GG
* * *
63826921 ATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
63826964 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
50 93 0.55
51 33 0.19
53 5 0.03
55 2 0.01
56 37 0.22
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:63832022 original size:50 final size:50
Alignment explanation
Indices: 63831907--63832099 Score: 253
Period size: 50 Copynumber: 3.8 Consensus size: 50
63831897 GATAATAACA
* ** *
63831907 TGCCAA-AGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCATATCGG
1 TGCCAACA-CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* ** * ** *
63831958 TGCCGATGCCATGTCCCAGACCTGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
63832008 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
63832058 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCT
63832100 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
50 93 0.76
51 30 0.24
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:63832084 original size:100 final size:101
Alignment explanation
Indices: 63831907--63832099 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 101
63831897 GATAATAACA
* ** * *
63831907 TGCCAAAGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCATATCGGTGCCGATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATGT
* *
63831972 CCCAGACCTGGTCTTACGGGGGACCTCTCATCTTGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
*
63832008 TGCCAACA-CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAACGCCATG
1 TGCCAA-AGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATG
*
63832071 TCCCAGACATGGTCTTACATGGGACCTCT
65 TCCCAGACATGGTCTTACAGGGGACCTCT
63832100 TTACCCAAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
100 47 0.57
101 34 0.41
102 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
Found at i:63836895 original size:41 final size:41
Alignment explanation
Indices: 63836838--63836935 Score: 178
Period size: 41 Copynumber: 2.4 Consensus size: 41
63836828 CTTTGAATGT
*
63836838 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
*
63836879 AAGGGGTTGCTAAGTGCAGATTCCCCGAATTATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
63836920 AAGGGGTTGCTAAGTG
1 AAGGGGTTGCTAAGTG
63836936 TGTTATGGAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
Found at i:63837005 original size:13 final size:14
Alignment explanation
Indices: 63836981--63837009 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63836971 AGGTTGTTAG
63836981 TATCAGTTAGCAGT
1 TATCAGTTAGCAGT
63836995 TATCA-TTAGCAGT
1 TATCAGTTAGCAGT
63837008 TA
1 TA
63837010 ATAAACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (14 bp):
TATCAGTTAGCAGT
Found at i:63841052 original size:42 final size:41
Alignment explanation
Indices: 63840982--63841096 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
63840972 TCCCCGAATT
* *
63840982 ATTGTTTATAAAGGTGGTTCCTAAGTGCTGATTCCATCGTATC
1 ATTGATTATAAA-GTGGTTGCTAAGTGCTGATTCC-TCGTATC
* * *
63841025 CTTGATTGTGAAAG-GGTTGCTATGTGCTGATTCCTCGTATC
1 ATTGATTAT-AAAGTGGTTGCTAAGTGCTGATTCCTCGTATC
*
63841066 ATTGATTATAAGGTGGTTGCTAAGTGCTGAT
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGAT
63841097 CCACCGGGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 3 0.05
41 30 0.49
42 18 0.30
43 7 0.11
44 3 0.05
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (41 bp):
ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCTCGTATC
Found at i:63841071 original size:41 final size:42
Alignment explanation
Indices: 63840982--63841143 Score: 150
Period size: 43 Copynumber: 3.8 Consensus size: 42
63840972 TCCCCGAATT
* *
63840982 ATTGTTTATAAAGGTGGTTCCTAAGTGCTGATTCCATCGTATC
1 ATTGATTATAAA-GTGGTTGCTAAGTGCTGATTCCATCGTATC
* * *
63841025 CTTGATTGTGAAAG-GGTTGCTATGTGCTGATTCC-TCGTATC
1 ATTGATTAT-AAAGTGGTTGCTAAGTGCTGATTCCATCGTATC
* * *
63841066 ATTGATTATAAGGTGGTTGCTAAGTGCTGA-TCCACCGGGATCC
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCATC-GTAT-C
* ** * *
63841109 TTTGAACATGAGGTGGTTGCTAAGTGCTGATTCCA
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCA
63841144 CCGGGATCCT
Statistics
Matches: 98, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
40 6 0.06
41 30 0.31
42 21 0.21
43 34 0.35
44 7 0.07
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.36
Consensus pattern (42 bp):
ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCATCGTATC
Found at i:63841159 original size:44 final size:44
Alignment explanation
Indices: 63841076--63841190 Score: 214
Period size: 44 Copynumber: 2.6 Consensus size: 44
63841066 ATTGATTATA
63841076 AGGTGGTTGCTAAGTGCTGA-TCCACCGGGATCCTTTGAACATG
1 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
63841119 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
1 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
*
63841163 AGGTGGTTGCTAAGTGCTAATTCCACCG
1 AGGTGGTTGCTAAGTGCTGATTCCACCG
63841191 TGTAACGGTT
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
43 20 0.29
44 50 0.71
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (44 bp):
AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
Found at i:63849522 original size:96 final size:97
Alignment explanation
Indices: 63849422--63849639 Score: 264
Period size: 96 Copynumber: 2.3 Consensus size: 97
63849412 TTTTTAATAA
* * *
63849422 AAAAATTAATTAAATTAGGGTTTAGA-GTTACTTGAGTAATTTAATTAAAAATTATTTA-AAAAT
1 AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATT-AAAATTATTTATAAAAT
* *
63849485 TAGATAAGG-GTTTAGAGTTAAGGGTTTTTAAGG
65 TAGATAAGGAG-TTAGAGTTAAGGGGTTTTAAGC
* * *
63849518 AAAAATCAAATAAATTAGGG-TTAAATGTTACTTGAGTAAATTAATTATAATTTTTTATAAAATT
1 AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATTAAAATTATTTATAAAATT
* * * *
63849582 TGATTAGGAGTTAGTGTTTAGGGGTTTTAAGC
66 AGATAAGGAGTTAGAGTTAAGGGGTTTTAAGC
*
63849614 AAAAACTCAAATAAATTAAGGTTTAG
1 AAAAA-TCAAATAAATTAGGGTTTAG
63849640 GGTTTAGGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
95 13 0.13
96 72 0.70
97 15 0.15
98 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (97 bp):
AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATTAAAATTATTTATAAAATT
AGATAAGGAGTTAGAGTTAAGGGGTTTTAAGC
Found at i:63849901 original size:126 final size:126
Alignment explanation
Indices: 63849676--63850217 Score: 879
Period size: 126 Copynumber: 4.3 Consensus size: 126
63849666 TTGTTAATTT
* *
63849676 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
*
63849741 ATTTCTGAGCAAATAGTGTCAAAAAA-GCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGT-AAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * *
63849802 AAAGAAGCTCCCACATAGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
63849867 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
*
63849928 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * *
63849993 GTTTTTGAGCAAATAGTGTAAAAAATGCTTTAAGCAGGATGTTTTGTCAGCAGAAGTACTA
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * *
63850054 AAAGAAGATCCCACGTGGACGCGTTTTTTCTACAGTAGCTCCCGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* ** *
63850119 GTTTCTGAGAAAATAGTGTCTAAAACGCCTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
63850180 AAAGAAGATCCCACGTGGACGCGCTTTTGCTAGAGTAG
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
63850218 AGCATGTTTG
Statistics
Matches: 385, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
125 6 0.02
126 379 0.98
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:63852335 original size:11 final size:11
Alignment explanation
Indices: 63852319--63852385 Score: 66
Period size: 11 Copynumber: 6.0 Consensus size: 11
63852309 ATTTTAAATA
63852319 GAAATTTGAGAG
1 GAAA-TTGAGAG
*
63852331 GAATTTGAGAG
1 GAAATTGAGAG
*
63852342 GAAATTGAAAG
1 GAAATTGAGAG
*
63852353 GAAATTGA-AA
1 GAAATTGAGAG
63852363 GAATATT-AGAG
1 GAA-ATTGAGAG
63852374 AGAAATTGAGAG
1 -GAAATTGAGAG
63852386 AAAGGATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
10 5 0.11
11 31 0.67
12 10 0.22
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:63858017 original size:26 final size:26
Alignment explanation
Indices: 63857988--63858040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
63857978 TCTGGAGTGA
63857988 AACAAAGTACTGAGAAGCTCTAGTTC
1 AACAAAGTACTGAGAAGCTCTAGTTC
*
63858014 AACAATGTACTGAGAAGCTCTAGTTC
1 AACAAAGTACTGAGAAGCTCTAGTTC
63858040 A
1 A
63858041 CACCAATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (26 bp):
AACAAAGTACTGAGAAGCTCTAGTTC
Found at i:63859403 original size:14 final size:13
Alignment explanation
Indices: 63859384--63859447 Score: 71
Period size: 13 Copynumber: 4.9 Consensus size: 13
63859374 GATCCGATTC
63859384 AAAAAAATCAAAT
1 AAAAAAATCAAAT
63859397 AAAAAAATCAAAT
1 AAAAAAATCAAAT
63859410 AAAAAAAT-AAA-
1 AAAAAAATCAAAT
*
63859421 AAAAGCAAA-CAAAG
1 AAAA--AAATCAAAT
63859435 AAGAAAAATCAAA
1 AA-AAAAATCAAA
63859448 ATCAAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.09
12 3 0.07
13 30 0.67
14 6 0.13
15 2 0.04
ACGTcount: A:0.78, C:0.08, G:0.05, T:0.09
Consensus pattern (13 bp):
AAAAAAATCAAAT
Found at i:63859450 original size:6 final size:6
Alignment explanation
Indices: 63859439--63859483 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
63859429 ACAAAGAAGA
* *
63859439 AAAATC AAAATC AAAATC AAAATC AAAGTC AAAATG AAAAT- AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
63859484 AAGGAGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.69, C:0.11, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:63859497 original size:20 final size:20
Alignment explanation
Indices: 63859469--63859509 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
63859459 AATCAAAGTC
*
63859469 AAAATGAAAATAAAAAAGGAG
1 AAAATG-AAAGAAAAAAGGAG
63859490 AAAA-GAAAGAAAAAAGGAG
1 AAAATGAAAGAAAAAAGGAG
63859509 A
1 A
63859510 GGCCAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 1 0.05
21 4 0.21
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (20 bp):
AAAATGAAAGAAAAAAGGAG
Done.