Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 201 of 222
Found at i:63859897 original size:13 final size:13
Alignment explanation
Indices: 63859854--63859889 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
63859844 GGATTTCAAA
* *
63859854 AAAAAAGAAGATG
1 AAAAATGAAAATG
63859867 AAAAATGAAAATG
1 AAAAATGAAAATG
63859880 AAAAATGAAA
1 AAAAATGAAA
63859890 GAGTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:63861262 original size:87 final size:87
Alignment explanation
Indices: 63861116--63861539 Score: 513
Period size: 87 Copynumber: 4.8 Consensus size: 87
63861106 ATCAGTGAAA
63861116 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
63861181 TCCTACGTTAACAGCGAAGTAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
63861203 ATCGAAAATAAAGCCTTGCCTCCATTGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
63861268 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
63861290 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCC
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* **
63861355 TCCTGTGTCGACA--GAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * ** *
63861375 ATC-AAAGATTACAAGTCCTAT--ATCC-CTGGCCAGCAGTGGA-ATAGGTTAGAA-ACTACAGA
1 ATCGAAA-A-CA-AAG-CCT-TGCCTCCATTGG-TTGCAGTGGAGCT-GGTTA-AAGA-T--AG-
63861434 TCTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAG
54 -C-AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAG
* *
63861470 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCC
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
63861535 TCCTG
66 TCCTG
63861540 TGTCGACAGA
Statistics
Matches: 285, Mismatches: 30, Indels: 44
0.79 0.08 0.12
Matches are distributed among these distances:
84 3 0.01
85 11 0.04
86 4 0.01
87 189 0.66
88 7 0.02
89 1 0.00
90 4 0.01
91 1 0.00
92 7 0.02
93 40 0.14
94 4 0.01
95 11 0.04
96 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (87 bp):
ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
TCCTGCGTTAACAGCGAAGCAG
Found at i:63861488 original size:180 final size:180
Alignment explanation
Indices: 63861257--63861616 Score: 720
Period size: 180 Copynumber: 2.0 Consensus size: 180
63861247 TAAAGATAGC
63861257 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
63861322 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
66 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
63861387 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
131 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
63861437 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
63861502 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
66 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
63861567 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
131 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
63861617 TATCTCCCTA
Statistics
Matches: 180, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 180 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (180 bp):
AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
Found at i:63861614 original size:87 final size:88
Alignment explanation
Indices: 63861340--63861617 Score: 279
Period size: 87 Copynumber: 3.1 Consensus size: 88
63861330 TGGTTAAAGA
63861340 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
1 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
63861405 CAGCAGTGGAATAGGTTAGAAAC
66 CAGCAGTGGAATAGGTTAGAAAC
* * ** *
63861428 TACAGATCTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A--ACAAAG-CCT-TG
1 T--AG--C-AGATCTTGCCCTCCTGTGTCGACA--GAAGCAGATCAAAGATTAC-AAGTCCTAT-
* * ** *
63861488 CCTCCATCGG-TTGCAGTGGAGCT-GGTTA-AAGA-
57 -ATCCCT-GGCCAGCAGTGGA-ATAGGTTAGAA-AC
63861520 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
1 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
63861585 CAGCAGTGGAATAGGTTAGAAAC
66 CAGCAGTGGAATAGGTTAGAAAC
63861608 TA-CAGATCTT
1 TAGCAGATCTT
63861618 ATCTCCCTAA
Statistics
Matches: 148, Mismatches: 20, Indels: 45
0.69 0.09 0.21
Matches are distributed among these distances:
85 12 0.08
86 4 0.03
87 49 0.33
88 11 0.07
89 1 0.01
90 4 0.03
91 1 0.01
92 9 0.06
93 41 0.28
94 4 0.03
95 12 0.08
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (88 bp):
TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
CAGCAGTGGAATAGGTTAGAAAC
Found at i:63862086 original size:139 final size:141
Alignment explanation
Indices: 63861679--63862201 Score: 838
Period size: 139 Copynumber: 3.7 Consensus size: 141
63861669 AGTGTAATGA
* * * *
63861679 AGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AA-AAATGATCT
1 AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCT
* *
63861742 TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAATCCAGAAATCTTATCTCCATGA
66 TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGA
63861807 GATTACAGCGG
131 GATTACAGCGG
* *
63861818 AGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAATAAAGAATC
1 AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAATAAAGGATC
63861883 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTG
65 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTG
63861948 AGATTACAGCGG
130 AGATTACAGCGG
* * * *
63861960 AGCAGATGGAAGCTAGTAATCCTATCTCCTTGAGATTATAGTAGAGTGGATT-AA-AAAGGATCT
1 AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCT
* *
63862023 TATCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGA
66 TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGA
63862088 GATTACAGCGG
131 GATTACAGCGG
63862099 AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATC
1 AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAATAAAGGATC
* * **
63862164 TTATCTCTATAAAGTTACAACAGAGTAGATCGCATCAG
65 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
63862202 GTCTTATCTC
Statistics
Matches: 352, Mismatches: 26, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
139 178 0.51
140 2 0.01
141 4 0.01
142 168 0.48
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (141 bp):
AGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAATAAAGGATCT
TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGA
GATTACAGCGG
Found at i:63862125 original size:44 final size:44
Alignment explanation
Indices: 63862057--63862145 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
63862047 TAAATCGCAT
* *
63862057 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
* * *
63862101 CAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
63862145 C
1 C
63862146 GGATTAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (44 bp):
CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
Found at i:63862182 original size:281 final size:281
Alignment explanation
Indices: 63861679--63862201 Score: 902
Period size: 281 Copynumber: 1.9 Consensus size: 281
63861669 AGTGTAATGA
* * *
63861679 AGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAAATGATCTTA
1 AGCAGATGGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTAGAGTGGATTAAAAAGGATCTTA
* * *
63861744 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAATCCAGAAATCTTATCTCCATGAGA
66 TCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCATGAGA
63861809 TTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAA
131 TTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAA
* * **
63861874 TAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTT
196 TAAAGAATCTTATCTCTATAAAGTTACAACAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTT
63861939 ATCTCCCTGAGATTACAGCGG
261 ATCTCCCTGAGATTACAGCGG
* * *
63861960 AGCAGATGGAAGCTAGTAATCCTATCTCCTTGAGATTATAGTAGAGTGGATTAAAAAGGATCTTA
1 AGCAGATGGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTAGAGTGGATTAAAAAGGATCTTA
*
63862025 TCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
66 TCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCATGAGA
*
63862090 TTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAA
131 TTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAA
*
63862155 TAAAGGATCTTATCTCTATAAAGTTACAACAGAGTAGATCGCATCAG
196 TAAAGAATCTTATCTCTATAAAGTTACAACAGAGTAGATCGCATCAG
63862202 GTCTTATCTC
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
281 226 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (281 bp):
AGCAGATGGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTAGAGTGGATTAAAAAGGATCTTA
TCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCATGAGA
TTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAA
TAAAGAATCTTATCTCTATAAAGTTACAACAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTT
ATCTCCCTGAGATTACAGCGG
Found at i:63862323 original size:50 final size:50
Alignment explanation
Indices: 63862247--63862455 Score: 199
Period size: 50 Copynumber: 4.2 Consensus size: 50
63862237 AATAATTACA
* * * * *
63862247 GCGAATCTTACCTCCCAGGCGA-TGCAGTGGAACAGATTAATGCCACAACG
1 GCGAATCTTGCTTCCCAGGC-ATTGCAGTGAAAAAGATTAAAGCCACAACG
* * * *
63862297 GCGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAGATTAAAGCTACAACA
1 GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
* * * *
63862347 GCGAATCTTACCTT-CCAGGCAATGCAGTGGAACAA-ATTAATGCCACAACG
1 GCGAATCTT-GCTTCCCAGGCATTGCAGT-GAAAAAGATTAAAGCCACAACG
* * * * * *
63862397 GCGAATCTTGCATCCCCGACATTACAGTTAAAAAGATTAAAGCCACAATG
1 GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
63862447 GCGAATCTT
1 GCGAATCTT
63862456 ACTTTCCAAA
Statistics
Matches: 127, Mismatches: 27, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
49 7 0.06
50 113 0.89
51 7 0.06
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (50 bp):
GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
Found at i:63862425 original size:100 final size:100
Alignment explanation
Indices: 63862244--63862463 Score: 350
Period size: 100 Copynumber: 2.2 Consensus size: 100
63862234 CCGAATAATT
* * * *
63862244 ACAGCGAATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAATGCCACAACGGCGAATCTTGCT
1 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
* * *
63862309 TCCCCGGCATTGCAGTTAAAAAGATTAAAGCTACA
66 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
63862344 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
1 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
63862409 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
66 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
** *
63862444 ATGGCGAATCTTACTTTCCA
1 ACAGCGAATCTTACCTTCCA
63862464 AAAGTTACGA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 110 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (100 bp):
ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
Found at i:63866817 original size:19 final size:18
Alignment explanation
Indices: 63866780--63866818 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63866770 TTTTATAAAT
**
63866780 TGTGAATTATATTTGATA
1 TGTGAATTATATTCAATA
63866798 TGTGAATTAATATTCAATA
1 TGTGAATT-ATATTCAATA
63866817 TG
1 TG
63866819 GAAGGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (18 bp):
TGTGAATTATATTCAATA
Found at i:63867074 original size:23 final size:23
Alignment explanation
Indices: 63867048--63867091 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
63867038 TTATTGATCA
63867048 GTGGTAGCTTCGGCTACATATTT
1 GTGGTAGCTTCGGCTACATATTT
63867071 GTGGTAGCTTCGGCTACATAT
1 GTGGTAGCTTCGGCTACATAT
63867092 CAGTGTGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.36
Consensus pattern (23 bp):
GTGGTAGCTTCGGCTACATATTT
Found at i:63873452 original size:23 final size:23
Alignment explanation
Indices: 63873426--63873501 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
63873416 AGTGTTATTG
63873426 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
63873449 ATCAGTGGTAACTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
63873472 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
63873495 ATCAGTG
1 ATCAGTG
63873502 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:63874048 original size:12 final size:12
Alignment explanation
Indices: 63874031--63874072 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
63874021 AACTAATCCT
63874031 CTCTCAAATTTC
1 CTCTCAAATTTC
63874043 CTCTC-AATTTC
1 CTCTCAAATTTC
*
63874054 CT-TCAAAATT-
1 CTCTCAAATTTC
63874064 CTCTCAAAT
1 CTCTCAAAT
63874073 CCATATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 4 0.15
11 17 0.65
12 5 0.19
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:63874157 original size:13 final size:12
Alignment explanation
Indices: 63874128--63874168 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
63874118 TTAACTCCCC
*
63874128 TTTTTTAAAATA
1 TTTTTTAAAATT
* *
63874140 ATTTTAAAAATT
1 TTTTTTAAAATT
63874152 TTTTTTAAAATT
1 TTTTTTAAAATT
63874164 TTTTT
1 TTTTT
63874169 AAACCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTTTAAAATT
Found at i:63876722 original size:124 final size:123
Alignment explanation
Indices: 63876560--63876906 Score: 491
Period size: 121 Copynumber: 2.8 Consensus size: 123
63876550 CCCAAACATG
* *
63876560 CTACTCTAGCAAAAGCGAGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
63876625 TAGACGCGATTTTATACTATTTGCTTAGAAAAGTCAAAAAAAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAA-TATTTCTTCAATGAC
* * *
63876684 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGAGATTTCACAAATTCTTTTCAAATAGCATCCTGA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
63876749 TAGAAGCGA--TTATACTATTTTCTCAGAAACGTCAAAAAAAATATTTCTTCAATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAATATTTCTTCAATGAC
* * * *
63876805 CTACTGTAGCAAAAACACGCCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * * * *
63876870 TCGAAGCAATTTTGTACTATTTGATCACAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAA
63876907 CTCGAAATTA
Statistics
Matches: 198, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
121 79 0.40
122 29 0.15
123 22 0.11
124 68 0.34
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAATATTTCTTCAATGAC
Found at i:63877408 original size:3 final size:3
Alignment explanation
Indices: 63877400--63877441 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
63877390 ACAGAAAATG
63877400 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
63877442 AATGAAGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:63877489 original size:44 final size:44
Alignment explanation
Indices: 63877438--63877524 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
63877428 AAGAAGAAGA
*
63877438 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGCCAGAC
1 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGAC
*
63877482 AGAAAATGAAGTTACTTGGATTAACCAGAAACAAACAGACAGA
1 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGA
63877525 AAATGGAAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.49, C:0.17, G:0.18, T:0.15
Consensus pattern (44 bp):
AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGAC
Found at i:63883394 original size:18 final size:19
Alignment explanation
Indices: 63883371--63883423 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
63883361 AATCGTGTGG
63883371 TTCATTTTCAAAAT-ATTA
1 TTCATTTTCAAAATCATTA
* *
63883389 TTCATTTAC-AAATCGTTA
1 TTCATTTTCAAAATCATTA
*
63883407 TTCAATTTCAAAA-CATT
1 TTCATTTTCAAAATCATT
63883424 TTTTTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 3 0.11
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (19 bp):
TTCATTTTCAAAATCATTA
Found at i:63887667 original size:34 final size:34
Alignment explanation
Indices: 63887629--63887696 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
63887619 TTACCTATGC
63887629 CATACCATTTTGAAACAAGCCATTTTATTTCATT
1 CATACCATTTTGAAACAAGCCATTTTATTTCATT
63887663 CATACCATTTTGAAACAAGCCATTTTATTTCATT
1 CATACCATTTTGAAACAAGCCATTTTATTTCATT
63887697 TACCTATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (34 bp):
CATACCATTTTGAAACAAGCCATTTTATTTCATT
Found at i:63890072 original size:25 final size:25
Alignment explanation
Indices: 63890007--63890075 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
63889997 GTCCCGATAT
* *
63890007 ATGGCTTTTCGGAGCCTCCTAATTA
1 ATGGCTCTTCGGAGCTTCCTAATTA
* ** *
63890032 TTGGCTCTTATGAGCTTCCTGATTA
1 ATGGCTCTTCGGAGCTTCCTAATTA
63890057 ATGGCTCTTCGGAGCTTCC
1 ATGGCTCTTCGGAGCTTCC
63890076 CGATATTGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.38
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCTAATTA
Found at i:63890132 original size:25 final size:25
Alignment explanation
Indices: 63890104--63890180 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
63890094 ACTTCCCAAT
* *
63890104 TACAGCTCCTATGAGCTTCTCGTTA
1 TACAGCTCATATGAGCTTCCCGTTA
63890129 TACAGCTCGA-ATGAGCTTCCCGTTA
1 TACAGCTC-ATATGAGCTTCCCGTTA
* * *
63890154 CATAGCTTATATGAGCTTCCCGTTA
1 TACAGCTCATATGAGCTTCCCGTTA
63890179 TA
1 TA
63890181 TGGCTCAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (25 bp):
TACAGCTCATATGAGCTTCCCGTTA
Found at i:63895900 original size:35 final size:35
Alignment explanation
Indices: 63895861--63895954 Score: 143
Period size: 35 Copynumber: 2.7 Consensus size: 35
63895851 TCCAACCAAG
**
63895861 ACACACCAATGCTTGTAAGAGCTAATCCCTCTGAA
1 ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
* * *
63895896 ACACACCAATGCTCATAAAAGTTAATCCCTTTGAA
1 ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
63895931 ACACACCAATGCTCATAAGAGCTA
1 ACACACCAATGCTCATAAGAGCTA
63895955 GTCCAACCGA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.22
Consensus pattern (35 bp):
ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
Found at i:63895967 original size:35 final size:35
Alignment explanation
Indices: 63895849--63895970 Score: 120
Period size: 35 Copynumber: 3.5 Consensus size: 35
63895839 GTACATCGTC
**
63895849 AATCCAACC-AAGACACACCAATGCTTGTAAGAGCT
1 AATCCAACCGAA-ACACACCAATGCTCATAAGAGCT
** * * *
63895884 AATCCCTCTGAAACACACCAATGCTCATAAAAGTT
1 AATCCAACCGAAACACACCAATGCTCATAAGAGCT
****
63895919 AATCCCTTTGAAACACACCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACACCAATGCTCATAAGAGCT
*
63895954 AGTCCAACCGAAACACA
1 AATCCAACCGAAACACA
63895971 GCAAACAGAG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
35 69 0.97
36 2 0.03
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (35 bp):
AATCCAACCGAAACACACCAATGCTCATAAGAGCT
Found at i:63896730 original size:19 final size:19
Alignment explanation
Indices: 63896706--63896743 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
63896696 TCAATGTAAA
63896706 CTTAAAAAAATTTGAACAG
1 CTTAAAAAAATTTGAACAG
63896725 CTTAAAAAAATTTGAACAG
1 CTTAAAAAAATTTGAACAG
63896744 AATAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
CTTAAAAAAATTTGAACAG
Found at i:63896750 original size:18 final size:19
Alignment explanation
Indices: 63896708--63896752 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
63896698 AATGTAAACT
**
63896708 TAAAAAAATTTGAACAGCT
1 TAAAAAAATTTGAACAGAA
63896727 TAAAAAAATTTGAACAGAA
1 TAAAAAAATTTGAACAGAA
63896746 TAAAAAA
1 TAAAAAA
63896753 CGATGGTACG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.62, C:0.07, G:0.09, T:0.22
Consensus pattern (19 bp):
TAAAAAAATTTGAACAGAA
Found at i:63905042 original size:18 final size:18
Alignment explanation
Indices: 63905019--63905054 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
63905009 AATTTCACTT
63905019 TCATGGAAAACACTAAGA
1 TCATGGAAAACACTAAGA
63905037 TCATGGAAAACACTAAGA
1 TCATGGAAAACACTAAGA
63905055 AAAACATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
TCATGGAAAACACTAAGA
Found at i:63910134 original size:17 final size:16
Alignment explanation
Indices: 63910102--63910135 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
63910092 TTGGCTATTC
*
63910102 TGTTTCTTTCTTCTTT
1 TGTTTCTTTATTCTTT
63910118 TGTTTCTTTTATTCTTT
1 TGTTTC-TTTATTCTTT
63910135 T
1 T
63910136 ATTTTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTATTCTTT
Found at i:63910183 original size:14 final size:14
Alignment explanation
Indices: 63910124--63910174 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
63910114 CTTTTGTTTC
*
63910124 TTTTA-TTCTTTTA
1 TTTTATTTCCTTTA
* *
63910137 TTTTAACTTACTTTA
1 TTTT-ATTTCCTTTA
*
63910152 CTTTATTTCCTTTA
1 TTTTATTTCCTTTA
63910166 TTTTATTTC
1 TTTTATTTC
63910175 TTTTGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTCCTTTA
Found at i:63910343 original size:14 final size:17
Alignment explanation
Indices: 63910324--63910360 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
63910314 ATTTATTTCT
63910324 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
63910338 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
63910355 TAATAT
1 TAATAT
63910361 CCTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:63915856 original size:13 final size:13
Alignment explanation
Indices: 63915838--63915864 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63915828 CCTTTTGACA
63915838 CCCATTCTTGTAC
1 CCCATTCTTGTAC
63915851 CCCATTCTTGTAC
1 CCCATTCTTGTAC
63915864 C
1 C
63915865 AACATATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.07, T:0.37
Consensus pattern (13 bp):
CCCATTCTTGTAC
Found at i:63925417 original size:239 final size:239
Alignment explanation
Indices: 63924998--63925475 Score: 956
Period size: 239 Copynumber: 2.0 Consensus size: 239
63924988 AAGTTTGACA
63924998 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
1 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
63925063 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
66 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
63925128 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
131 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
63925193 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
196 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
63925237 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
1 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
63925302 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
66 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
63925367 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
131 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
63925432 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
196 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
63925476 TGGTTTGAGG
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 239 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (239 bp):
ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
Found at i:63937352 original size:16 final size:17
Alignment explanation
Indices: 63937331--63937368 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
63937321 TATATTTATG
*
63937331 TATTTA-AATTTTATTT
1 TATTTATAATTTAATTT
63937347 TATTTATAATTTAATTT
1 TATTTATAATTTAATTT
*
63937364 AATTT
1 TATTT
63937369 TTTAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTATAATTTAATTT
Found at i:63938497 original size:25 final size:26
Alignment explanation
Indices: 63938458--63938508 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
63938448 CTAATTTCTC
*
63938458 CTTTCTTTCTTTCCCTTTTTC-TTTT
1 CTTTCTTTCTTTCCCTATTTCATTTT
63938483 CTTTCTTT-TTCTCCCTATTTCATTTT
1 CTTTCTTTCTT-TCCCTATTTCATTTT
63938509 TATAATGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 2 0.09
25 17 0.74
26 4 0.17
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (26 bp):
CTTTCTTTCTTTCCCTATTTCATTTT
Found at i:63938585 original size:16 final size:15
Alignment explanation
Indices: 63938563--63938624 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 15
63938553 TTTACTTATT
63938563 ATAATATATAATATA
1 ATAATATATAATATA
*
63938578 AT-ATATATACTTAATA
1 ATAATATATA-AT-ATA
* *
63938594 ATGAAGATATAATATT
1 AT-AATATATAATATA
63938610 ATAATATTATAATAT
1 ATAATA-TATAATAT
63938625 TTATTTATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
14 7 0.19
15 6 0.16
16 17 0.46
17 1 0.03
18 6 0.16
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAATATATAATATA
Found at i:63938614 original size:8 final size:8
Alignment explanation
Indices: 63938601--63938625 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63938591 ATAATGAAGA
63938601 TATAATAT
1 TATAATAT
63938609 TATAATAT
1 TATAATAT
63938617 TATAATAT
1 TATAATAT
63938625 T
1 T
63938626 TATTTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TATAATAT
Found at i:63944706 original size:12 final size:12
Alignment explanation
Indices: 63944689--63944714 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63944679 CTTTCTTTCC
63944689 CTTTTTTCTTTT
1 CTTTTTTCTTTT
63944701 CTTTTTTCTTTT
1 CTTTTTTCTTTT
63944713 CT
1 CT
63944715 CCTTGTTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
CTTTTTTCTTTT
Found at i:63944728 original size:27 final size:25
Alignment explanation
Indices: 63944680--63944729 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
63944670 TTCTCCTTCC
* *
63944680 TTTCTTTCCCTTTTTTCTTTTCTTT
1 TTTCTTTCCCTTGTTTCGTTTCTTT
63944705 TTTCTTTTCTCCTTGTTTCGTTTCT
1 TTTC-TTTC-CCTTGTTTCGTTTCT
63944730 ATCATGTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 4 0.19
27 13 0.62
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTCTTTCCCTTGTTTCGTTTCTTT
Found at i:63945403 original size:15 final size:15
Alignment explanation
Indices: 63945354--63945405 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
63945344 CAATTCAAAT
*
63945354 AATCAATATATATTC
1 AATCAATATAAATTC
*
63945369 AATATATATATACCAATTC
1 AAT-CA-ATATA--AATTC
63945388 AATCAATATAAATTC
1 AATCAATATAAATTC
63945403 AAT
1 AAT
63945406 AAATTCATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 1 0.03
17 10 0.33
18 1 0.03
19 7 0.23
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
AATCAATATAAATTC
Found at i:63950406 original size:20 final size:20
Alignment explanation
Indices: 63950381--63950418 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
63950371 TTAATAAATA
*
63950381 ACATTATAATTATATGACAG
1 ACATTATAACTATATGACAG
63950401 ACATTATAACTATATGAC
1 ACATTATAACTATATGAC
63950419 TACGGGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
ACATTATAACTATATGACAG
Found at i:63951180 original size:22 final size:22
Alignment explanation
Indices: 63951153--63951195 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63951143 CAAAAATAAT
*
63951153 ATATATG-AATAAATTTATTAAA
1 ATATATGTAA-AAAATTATTAAA
63951175 ATATATGTAAAAAATTATTAA
1 ATATATGTAAAAAATTATTAA
63951196 TATGCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
ATATATGTAAAAAATTATTAAA
Found at i:63952585 original size:2 final size:2
Alignment explanation
Indices: 63952578--63952603 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63952568 CGAATAGGAA
63952578 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63952604 TAAGAAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63954418 original size:26 final size:24
Alignment explanation
Indices: 63954363--63954418 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
63954353 AAATTACCAT
** *
63954363 TTTTATTTTGAAAAGCTTTTAAAA
1 TTTTATTTTGAAAAAATGTTAAAA
63954387 TGTTTATTTTGAAAAAAATGTTAAATA
1 T-TTTATTTTG-AAAAAATGTTAAA-A
63954414 TTTTA
1 TTTTA
63954419 AAATTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.04
25 9 0.35
26 14 0.54
27 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (24 bp):
TTTTATTTTGAAAAAATGTTAAAA
Found at i:63954518 original size:28 final size:27
Alignment explanation
Indices: 63954468--63954523 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
63954458 CTTTTATTAA
*
63954468 TTTAATTTTAAATAAAATTAAAATCATG
1 TTTAATTTTAAATAAAATGAAAA-CATG
*
63954496 TTTAATATTTAATTAAAA-GAAAACATG
1 TTTAAT-TTTAAATAAAATGAAAACATG
63954523 T
1 T
63954524 CTACCCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.20
28 10 0.40
29 10 0.40
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (27 bp):
TTTAATTTTAAATAAAATGAAAACATG
Found at i:63956641 original size:21 final size:22
Alignment explanation
Indices: 63956617--63956657 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
63956607 TTAAAATATG
63956617 TAAATT-TATAAATT-CATTTAA
1 TAAATTAT-TAAATTGCATTTAA
63956638 TAAATTATTAAATTGCATTT
1 TAAATTATTAAATTGCATTT
63956658 TTCGATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (22 bp):
TAAATTATTAAATTGCATTTAA
Found at i:63956760 original size:17 final size:18
Alignment explanation
Indices: 63956730--63956769 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
63956720 AAAATGATAA
*
63956730 TTATATTTAATTATT-TT
1 TTATAGTTAATTATTCTT
*
63956747 TTATAGTTAGTTATTCTT
1 TTATAGTTAATTATTCTT
63956765 TTATA
1 TTATA
63956770 ACAATGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TTATAGTTAATTATTCTT
Found at i:63957220 original size:16 final size:15
Alignment explanation
Indices: 63957192--63957229 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
63957182 ATGAAAATTA
63957192 AATTTTA-TTGAAACT
1 AATTTTATTTGAAA-T
63957207 AATTTTATTTGAAAT
1 AATTTTATTTGAAAT
*
63957222 AATATTAT
1 AATTTTAT
63957230 GTATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (15 bp):
AATTTTATTTGAAAT
Found at i:63960722 original size:18 final size:19
Alignment explanation
Indices: 63960699--63960734 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
63960689 GGGCAAAATG
63960699 TAATAGAC-AAAATTAATA
1 TAATAGACTAAAATTAATA
*
63960717 TAATAGACTAATATTAAT
1 TAATAGACTAAAATTAAT
63960735 TTTTCCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (19 bp):
TAATAGACTAAAATTAATA
Found at i:63970470 original size:39 final size:39
Alignment explanation
Indices: 63970416--63970492 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
63970406 TAGAAGTGGT
63970416 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
1 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
63970455 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTA
1 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTA
63970493 TCTCATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (39 bp):
ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
Found at i:63973639 original size:21 final size:21
Alignment explanation
Indices: 63973606--63973651 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
63973596 CCTAGGGCTT
* *
63973606 CACACATATGGTTTGCATATA
1 CACACATAGGGTTTACATATA
*
63973627 CACAGATAGGGTTTACATATA
1 CACACATAGGGTTTACATATA
63973648 CACA
1 CACA
63973652 AATATGTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (21 bp):
CACACATAGGGTTTACATATA
Found at i:63973668 original size:23 final size:22
Alignment explanation
Indices: 63973606--63973668 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
63973596 CCTAGGGCTT
* *
63973606 CACACATA-TGGTTTGCATATA
1 CACAAATAGTGGTTAGCATATA
*
63973627 CACAGATAG-GGTTTA-CATATA
1 CACAAATAGTGG-TTAGCATATA
63973648 CACAAATATGTGGTTAGCATA
1 CACAAATA-GTGGTTAGCATA
63973669 ATAAACATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 22 0.65
22 6 0.18
23 6 0.18
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (22 bp):
CACAAATAGTGGTTAGCATATA
Found at i:63973744 original size:23 final size:22
Alignment explanation
Indices: 63973714--63973757 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
63973704 GGTTCGCTAC
*
63973714 TACAATATGA-AGGTTTTGCATG
1 TACAATAT-ATAGGGTTTGCATG
63973736 TACACATATATAGGGTTTGCAT
1 TACA-ATATATAGGGTTTGCAT
63973758 AATAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.36
Consensus pattern (22 bp):
TACAATATATAGGGTTTGCATG
Found at i:63973765 original size:23 final size:23
Alignment explanation
Indices: 63973739--63973860 Score: 68
Period size: 23 Copynumber: 5.0 Consensus size: 23
63973729 TTGCATGTAC
63973739 ACATATATAGGGTTTGCATAATA
1 ACATATATAGGGTTTGCATAATA
* * *
63973762 ACATGTATAAGGTTTGCATATACA
1 ACATATATAGGGTTTGCATA-ATA
*
63973786 CACGTATATATAAAGAGTTTGCATAGATA
1 -AC--ATATAT--AGGGTTTGCATA-ATA
* ** *
63973815 A-ACATGCAGGGTTCGCAT-ATA
1 ACATATATAGGGTTTGCATAATA
* *
63973836 CACATATATAGGGTTCGCATCATA
1 -ACATATATAGGGTTTGCATAATA
63973860 A
1 A
63973861 ACATTTTTGG
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
21 3 0.04
22 1 0.01
23 42 0.57
24 5 0.07
25 5 0.07
27 5 0.07
28 1 0.01
29 12 0.16
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (23 bp):
ACATATATAGGGTTTGCATAATA
Found at i:63977718 original size:34 final size:34
Alignment explanation
Indices: 63977672--63977742 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
63977662 TGCCACTGAG
*
63977672 TTGAACTATTATAAACGTATTAATTGCTACTGTA
1 TTGAACTATTATAAACATATTAATTGCTACTGTA
* * *
63977706 TTGAACTGTTATAAGCATATTGATTGCTACTGTA
1 TTGAACTATTATAAACATATTAATTGCTACTGTA
63977740 TTG
1 TTG
63977743 TTCTATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.42
Consensus pattern (34 bp):
TTGAACTATTATAAACATATTAATTGCTACTGTA
Found at i:63977756 original size:34 final size:34
Alignment explanation
Indices: 63977672--63977763 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
63977662 TGCCACTGAG
*
63977672 TTGAACTATTATAAA-CGTATTAATTGCTACTGTA
1 TTGAACTATTA-AAAGCATATTAATTGCTACTGTA
* * *
63977706 TTGAACTGTTATAAGCATATTGATTGCTACTGTA
1 TTGAACTATTAAAAGCATATTAATTGCTACTGTA
**
63977740 TTGTTCTATTAAAAGCATAATTAA
1 TTGAACTATTAAAAGCAT-ATTAA
63977764 ATACTATCGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 2 0.04
34 41 0.87
35 4 0.09
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (34 bp):
TTGAACTATTAAAAGCATATTAATTGCTACTGTA
Found at i:63979188 original size:33 final size:36
Alignment explanation
Indices: 63979142--63979223 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 36
63979132 AAAAAATTAT
*
63979142 TATTTATTATATTATT-AA-TTTGAA-ATTTGAATAA
1 TATTTATTATATTATTAAATTTTGAATA-TTGAAAAA
*
63979176 T-TTTATTTTATTATTAAATTTTGAATATTGAAAAA
1 TATTTATTATATTATTAAATTTTGAATATTGAAAAA
63979211 TATTTATTATATT
1 TATTTATTATATT
63979224 TAAGCTTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 13 0.32
34 3 0.07
35 14 0.34
36 11 0.27
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (36 bp):
TATTTATTATATTATTAAATTTTGAATATTGAAAAA
Found at i:63979259 original size:16 final size:17
Alignment explanation
Indices: 63979233--63979277 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
63979223 TTAAGCTTAA
63979233 GGTGAAAAAAAGTCTTT
1 GGTGAAAAAAAGTCTTT
63979250 GGTGAAAAAAAGTCTTT
1 GGTGAAAAAAAGTCTTT
*
63979267 AGTGAAAAAAA
1 GGTGAAAAAAA
63979278 TTCAATTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.22, T:0.24
Consensus pattern (17 bp):
GGTGAAAAAAAGTCTTT
Found at i:63979644 original size:21 final size:21
Alignment explanation
Indices: 63979618--63979657 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63979608 CATAATATTA
*
63979618 TAAAAAAATATTAAATAATTG
1 TAAAAAAATATAAAATAATTG
*
63979639 TAAAAAATTATAAAATAAT
1 TAAAAAAATATAAAATAAT
63979658 AAAAATTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
TAAAAAAATATAAAATAATTG
Found at i:63980092 original size:20 final size:21
Alignment explanation
Indices: 63980058--63980096 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63980048 GATCATTTTT
*
63980058 ATTATTTTATAATTTTTTACA
1 ATTATTTAATAATTTTTTACA
63980079 ATTATTTAAT-ATTTTTTA
1 ATTATTTAATAATTTTTTA
63980097 TAATATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTATTTAATAATTTTTTACA
Found at i:63982108 original size:23 final size:23
Alignment explanation
Indices: 63982053--63982109 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
63982043 ATTGGAATAG
* *
63982053 AATTAACATTTACTGTTTAAAAA
1 AATTAATATTTACTATTTAAAAA
* * *
63982076 AAATATTATTTACTATTTAACAA
1 AATTAATATTTACTATTTAAAAA
*
63982099 ACTTAATATTT
1 AATTAATATTT
63982110 TTGAAATTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
AATTAATATTTACTATTTAAAAA
Found at i:63994616 original size:11 final size:11
Alignment explanation
Indices: 63994600--63994625 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63994590 CTGTTTTTCC
63994600 TTCTCATCTTG
1 TTCTCATCTTG
63994611 TTCTCATCTTG
1 TTCTCATCTTG
63994622 TTCT
1 TTCT
63994626 TAGCTAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.27, G:0.08, T:0.58
Consensus pattern (11 bp):
TTCTCATCTTG
Found at i:64002182 original size:21 final size:21
Alignment explanation
Indices: 64002158--64002213 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
64002148 CATTGTTTTT
*
64002158 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
64002179 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
64002200 AATCTCACCGCTAC
1 AATCTCACCGCTAC
64002214 CGCTGTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:64003777 original size:10 final size:10
Alignment explanation
Indices: 64003762--64003786 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64003752 TCATTCTCCT
64003762 TTTTTTTTTC
1 TTTTTTTTTC
64003772 TTTTTTTTTC
1 TTTTTTTTTC
64003782 TTTTT
1 TTTTT
64003787 AATTACTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:64004380 original size:20 final size:18
Alignment explanation
Indices: 64004345--64004386 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
64004335 TTTTTTAGAA
64004345 TTTTTTAATTTCTTATATG
1 TTTTTTAATTTCTTATA-G
64004364 TTTTTCTAAGTTT-TTATAG
1 TTTTT-TAA-TTTCTTATAG
64004383 TTTT
1 TTTT
64004387 GCACTCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 10 0.48
20 8 0.38
21 3 0.14
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (18 bp):
TTTTTTAATTTCTTATAG
Found at i:64004455 original size:16 final size:17
Alignment explanation
Indices: 64004424--64004456 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64004414 ATGTACATTT
*
64004424 TATTTATTTTAAAAAAA
1 TATTTATTTGAAAAAAA
64004441 TATTT-TTTGAAAAAAA
1 TATTTATTTGAAAAAAA
64004457 AATATTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TATTTATTTGAAAAAAA
Found at i:64013054 original size:6 final size:7
Alignment explanation
Indices: 64013038--64013064 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
64013028 CACTTAAATC
64013038 TTTTTAT
1 TTTTTAT
64013045 TTTTTAT
1 TTTTTAT
64013052 TTTTTAT
1 TTTTTAT
64013059 TTTTTA
1 TTTTTA
64013065 ATAGAAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:64020064 original size:27 final size:29
Alignment explanation
Indices: 64020016--64020069 Score: 94
Period size: 27 Copynumber: 1.9 Consensus size: 29
64020006 TGATTTGACA
64020016 AAAAATATAAATTTAAAAGTTAAAATATG
1 AAAAATATAAATTTAAAAGTTAAAATATG
64020045 AAAAAT-TAAA-TTAAAAGTTAAAATA
1 AAAAATATAAATTTAAAAGTTAAAATA
64020070 AGTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.60
28 4 0.16
29 6 0.24
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (29 bp):
AAAAATATAAATTTAAAAGTTAAAATATG
Found at i:64020201 original size:8 final size:8
Alignment explanation
Indices: 64020188--64020212 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64020178 CAAAAGCCAA
64020188 ACATTATT
1 ACATTATT
64020196 ACATTATT
1 ACATTATT
64020204 ACATTATT
1 ACATTATT
64020212 A
1 A
64020213 TTATTCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (8 bp):
ACATTATT
Found at i:64022770 original size:29 final size:30
Alignment explanation
Indices: 64022695--64022770 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 30
64022685 ATTGGACTTG
*
64022695 ATTTTCAAATTTGAAAAGTAGAGGGACTAA
1 ATTTTCAAATTTGAAAAGTAGAAGGACTAA
* * *
64022725 ATTCTTGAAA-AT-AAAAGTATAAGGACTAA
1 ATT-TTCAAATTTGAAAAGTAGAAGGACTAA
*
64022754 ATTTT-AAATTTGTAAAG
1 ATTTTCAAATTTGAAAAG
64022771 AGTACATGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.08
28 3 0.08
29 22 0.59
30 4 0.11
31 5 0.14
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (30 bp):
ATTTTCAAATTTGAAAAGTAGAAGGACTAA
Found at i:64022930 original size:16 final size:16
Alignment explanation
Indices: 64022899--64022935 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
64022889 ATCTGAAGTA
64022899 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
64022915 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
64022931 TATTA
1 TATTA
64022936 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:64023035 original size:15 final size:16
Alignment explanation
Indices: 64023012--64023067 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 16
64023002 ATATGTATTT
64023012 TTAATAATATTTAAAA
1 TTAATAATATTTAAAA
* *
64023028 TT-ATAATATTTTATA
1 TTAATAATATTTAAAA
64023043 TTAATAAT-TTT-AAA
1 TTAATAATATTTAAAA
*
64023057 TAAATAATATT
1 TTAATAATATT
64023068 CTTCAAACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.26
15 18 0.53
16 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAATAATATTTAAAA
Found at i:64027847 original size:21 final size:21
Alignment explanation
Indices: 64027809--64027852 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 21
64027799 AGAAAAAAAG
64027809 AAATACAAAAAGAATAG-ATC
1 AAATACAAAAAGAATAGAATC
64027829 AAAT-CAAAAAGGAAATAGAATC
1 AAATACAAAAA-G-AATAGAATC
64027851 AA
1 AA
64027853 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.29
20 5 0.24
21 5 0.24
22 5 0.24
ACGTcount: A:0.66, C:0.09, G:0.11, T:0.14
Consensus pattern (21 bp):
AAATACAAAAAGAATAGAATC
Found at i:64031083 original size:14 final size:15
Alignment explanation
Indices: 64031066--64031094 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64031056 ATACTATTTT
64031066 AAAATTA-ATAAATA
1 AAAATTATATAAATA
64031080 AAAATTATATAAATA
1 AAAATTATATAAATA
64031095 TATAAAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATTATATAAATA
Found at i:64035630 original size:3 final size:3
Alignment explanation
Indices: 64035622--64035661 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
64035612 TTTTAAGCAC
64035622 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
64035662 TGACCCTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:64044315 original size:23 final size:24
Alignment explanation
Indices: 64044284--64044333 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
64044274 AATTTTGTGT
* *
64044284 CTATCTGTAATATCCCGGAAATTA
1 CTATCTGTAATACCCCGAAAATTA
64044308 CTAT-TGTAATACCCCGAAAATTA
1 CTATCTGTAATACCCCGAAAATTA
64044331 CTA
1 CTA
64044334 CAGTAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (24 bp):
CTATCTGTAATACCCCGAAAATTA
Found at i:64044339 original size:23 final size:23
Alignment explanation
Indices: 64044290--64044339 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
64044280 GTGTCTATCT
* * **
64044290 GTAATATCCCGGAAATTACTATT
1 GTAATACCCCGAAAATTACTACA
64044313 GTAATACCCCGAAAATTACTACA
1 GTAATACCCCGAAAATTACTACA
64044336 GTAA
1 GTAA
64044340 GAAAGTAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (23 bp):
GTAATACCCCGAAAATTACTACA
Found at i:64046696 original size:23 final size:23
Alignment explanation
Indices: 64046665--64046709 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
64046655 TACAATCAAC
64046665 ATTACACATATC-AACAAGCCATA
1 ATTACACAT-TCAAACAAGCCATA
*
64046688 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
64046710 AAATAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCATA
Found at i:64047904 original size:90 final size:90
Alignment explanation
Indices: 64047783--64047963 Score: 263
Period size: 90 Copynumber: 2.0 Consensus size: 90
64047773 AATTCATCCT
* ** *
64047783 TTACATTCGTAGTGCCATAACTTAGTCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
*
64047848 TTTACATATAAACACTACCATGGTC
66 CTTACATATAAACACTACCATGGTC
* * * *
64047873 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
* *
64047938 CTTACATATAAACACTGCCCTGGTC
66 CTTACATATAAACACTACCATGGTC
64047963 T
1 T
64047964 AACCATGGTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (90 bp):
TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
CTTACATATAAACACTACCATGGTC
Found at i:64051246 original size:39 final size:39
Alignment explanation
Indices: 64051070--64051238 Score: 257
Period size: 39 Copynumber: 4.3 Consensus size: 39
64051060 CATGTTTTGA
* * * *
64051070 GTATTGTGATATATTCTTGAATGTTATGTGATTAAATAT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
64051109 GTATTGTGATATATGCTTAAATGTTATGTGATTGTATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
**
64051148 GTATTGTGATATATGCTTAAATGTTACATGATTATATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
64051187 GTACTGTGATATATGCTTAAATGTTATGTGATTATATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
64051226 GTAATGTGATATA
1 GTATTGTGATATA
64051239 CGTTTAAAAG
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.47
Consensus pattern (39 bp):
GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
Found at i:64073519 original size:36 final size:36
Alignment explanation
Indices: 64073479--64073551 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
64073469 AACGAATCCT
64073479 ATATACTTGACATTGCAAAATCTCCACATCCAGATC
1 ATATACTTGACATTGCAAAATCTCCACATCCAGATC
64073515 ATATACTTGACATTGCAAAATCTCCACATCCAGATC
1 ATATACTTGACATTGCAAAATCTCCACATCCAGATC
64073551 A
1 A
64073552 CAATGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (36 bp):
ATATACTTGACATTGCAAAATCTCCACATCCAGATC
Found at i:64084100 original size:16 final size:15
Alignment explanation
Indices: 64084079--64084110 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
64084069 AAAAAAAAAC
64084079 AATAACAATAATTAAT
1 AATAACAATAA-TAAT
64084095 AATAACAATAATAAT
1 AATAACAATAATAAT
64084110 A
1 A
64084111 TGAAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
AATAACAATAATAAT
Found at i:64084530 original size:11 final size:11
Alignment explanation
Indices: 64084514--64084542 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
64084504 GTACCCCTAT
64084514 AAATTTCAAAA
1 AAATTTCAAAA
64084525 AAATTTC-AAA
1 AAATTTCAAAA
64084535 AAATTTCA
1 AAATTTCA
64084543 TTTTCCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (11 bp):
AAATTTCAAAA
Found at i:64085470 original size:55 final size:55
Alignment explanation
Indices: 64085387--64085677 Score: 217
Period size: 55 Copynumber: 5.4 Consensus size: 55
64085377 TAGACTAAGG
* * * *
64085387 GGGTGTCGGCTATCAGTGTCCCAGCACCCAATTTTTTTTAAAAAATTTGGTACAA
1 GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
** * ** * *
64085442 GGGTGTTGGTCATCAGTGTCTTAACACCCAATTTTTTTAAAAAAATCTGGTACTA
1 GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
* * *
64085497 GGGTGCCGGCCATCAGTGTCCCAACACCCTAATTTTTTTT--TAAATTTGATA-AA
1 GGGTGCCGGCCATCAGTGTCCCAACACCC-AATTTTTTTTAAAAAATCTGGTACAA
* * * *
64085550 TGGGTGTCGGCCATTAGTGTCCCAGCACCCAAAATGTTTTTTT---TAATCTGGTACAA
1 -GGGTGCCGGCCATCAGTGTCCCAACACCC--AAT-TTTTTTTAAAAAATCTGGTACAA
* * * * * * **
64085606 GGGTGTCAGG-CATCATTGTTCCAAAATCCAATTTTTTTT----AATATGGTACCG
1 GGGTG-CCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
64085657 GGGTGCCGGCCATCAGTGTCC
1 GGGTGCCGGCCATCAGTGTCC
64085678 TAGTGTCACG
Statistics
Matches: 189, Mismatches: 40, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
50 3 0.02
51 23 0.12
52 7 0.04
53 4 0.02
54 34 0.18
55 98 0.52
56 20 0.11
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (55 bp):
GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
Found at i:64098200 original size:27 final size:27
Alignment explanation
Indices: 64098162--64098231 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
64098152 AAAAATAAAA
64098162 ATTTATCAAAATAT-TATAATTTTTTTT
1 ATTTATCAAAATATATATAA-TTTTTTT
*
64098189 ATTTACCAAAATATATATAATTTTTTT
1 ATTTATCAAAATATATATAATTTTTTT
64098216 ATTTATCAAAATATAT
1 ATTTATCAAAATATAT
64098232 CAAAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 35 0.88
28 5 0.12
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTTATCAAAATATATATAATTTTTTT
Found at i:64098403 original size:18 final size:19
Alignment explanation
Indices: 64098372--64098407 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
64098362 TGGGGGGCAG
64098372 AAGGAGAGGGAAAGAAAAA
1 AAGGAGAGGGAAAGAAAAA
64098391 AAGGAGA-GGAAAGAAAA
1 AAGGAGAGGGAAAGAAAA
64098408 GGAAAGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
AAGGAGAGGGAAAGAAAAA
Found at i:64098409 original size:15 final size:15
Alignment explanation
Indices: 64098380--64098520 Score: 58
Period size: 15 Copynumber: 10.0 Consensus size: 15
64098370 AGAAGGAGAG
64098380 GGAAA-GAAA-AAAA
1 GGAAAGGAAAGAAAA
*
64098393 GGAGAGGAAAGAAAA
1 GGAAAGGAAAGAAAA
64098408 GGAAAGGATAAGAGAAA
1 GGAAAGGA-AAGA-AAA
* *
64098425 --AAAAGAAA-TAAA
1 GGAAAGGAAAGAAAA
*
64098437 -G-AAGAAGAAGAAAA
1 GGAAAGGA-AAGAAAA
* *
64098451 TGAAAAGAGAAG-AAA
1 GGAAAGGA-AAGAAAA
64098466 --AAA-GAAAG-AAA
1 GGAAAGGAAAGAAAA
64098477 -G-AAGGAAAGAAAA
1 GGAAAGGAAAGAAAA
*
64098490 GGAAAGGAGAAGAAGA
1 GGAAAGGA-AAGAAAA
* *
64098506 GGGAAGGAAGGAAAA
1 GGAAAGGAAAGAAAA
64098521 AAAAAAGGTA
Statistics
Matches: 100, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
11 8 0.08
12 13 0.13
13 12 0.12
14 10 0.10
15 30 0.30
16 24 0.24
17 3 0.03
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (15 bp):
GGAAAGGAAAGAAAA
Found at i:64098439 original size:16 final size:15
Alignment explanation
Indices: 64098420--64098489 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 15
64098410 AAAGGATAAG
64098420 AGAAAAAAAGAAATAA
1 AGAAAAAAAGAAA-AA
*
64098436 AGAAGAAGAAG-AAAA
1 AGAA-AAAAAGAAAAA
*
64098451 TGAAAAGAGAAGAAAAA
1 AGAAAA-A-AAGAAAAA
* *
64098468 AGAAAGAAAGAAGGAA
1 AGAAAAAAAGAA-AAA
64098484 AGAAAA
1 AGAAAA
64098490 GGAAAGGAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 17 0.40
17 13 0.31
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AGAAAAAAAGAAAAA
Found at i:64098447 original size:17 final size:16
Alignment explanation
Indices: 64098427--64098475 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 16
64098417 AAGAGAAAAA
64098427 AAGAAATAAAGAAGAAG
1 AAGAAATAAAGAAG-AG
*
64098444 AAGAAAATGAA-AAGAG
1 AAG-AAATAAAGAAGAG
64098460 AAGAAA-AAAGAA-AG
1 AAGAAATAAAGAAGAG
64098474 AA
1 AA
64098476 AGAAGGAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 6 0.21
15 5 0.18
16 5 0.18
17 6 0.21
18 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (16 bp):
AAGAAATAAAGAAGAG
Found at i:64098474 original size:44 final size:45
Alignment explanation
Indices: 64098381--64098503 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 45
64098371 GAAGGAGAGG
* * * * *
64098381 GAAAGAAAAAAAGGAGAGGAAAGAAAAGGAAAGGATAAGAGAAAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
* *
64098426 -AAAGAAATAAAGAAGAAG-AAGAAAATGAAAAGAGAAGAAAAAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
*
64098469 GAAAG----AAAGAAG--GAAAGAAAAGGAAAGGAGAAGAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAA
64098504 GAGGGAAGGA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 19 0.28
40 7 0.10
43 21 0.31
44 19 0.28
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.02
Consensus pattern (45 bp):
GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
Found at i:64098475 original size:33 final size:33
Alignment explanation
Indices: 64098420--64098490 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
64098410 AAAGGATAAG
64098420 AGAAAA-A-AAGAAATAAAGAAG-AAGAAGAAA
1 AGAAAAGAGAAGAAATAAAGAAGAAAGAAGAAA
*
64098450 ATGAAAAGAGAAGAAA-AAAGAAAGAAAGAAGGAA
1 A-GAAAAGAGAAGAAATAAAG-AAGAAAGAAGAAA
64098484 AGAAAAG
1 AGAAAAG
64098491 GAAAGGAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
30 1 0.03
31 5 0.14
32 5 0.14
33 15 0.43
34 9 0.26
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (33 bp):
AGAAAAGAGAAGAAATAAAGAAGAAAGAAGAAA
Found at i:64098512 original size:16 final size:15
Alignment explanation
Indices: 64098477--64098520 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
64098467 AAGAAAGAAA
64098477 GAAGGAAAGAAAAGG
1 GAAGGAAAGAAAAGG
* *
64098492 AAAGGAGAAGAAGAGG
1 GAAGGA-AAGAAAAGG
*
64098508 GAAGGAAGGAAAA
1 GAAGGAAAGAAAA
64098521 AAAAAAGGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGGAAAGAAAAGG
Found at i:64098552 original size:18 final size:19
Alignment explanation
Indices: 64098529--64098573 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
64098519 AAAAAAAAGG
64098529 TAATTTTATT-TATAAATT
1 TAATTTTATTGTATAAATT
*
64098547 TAATTTTTTTTGTATAAATT
1 TAA-TTTTATTGTATAAATT
64098567 TAATTTT
1 TAATTTT
64098574 TTTTGTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 3 0.12
19 10 0.42
20 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TAATTTTATTGTATAAATT
Found at i:64098574 original size:21 final size:20
Alignment explanation
Indices: 64098539--64098580 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
64098529 TAATTTTATT
64098539 TATAAATTTAATTTTTTTTG
1 TATAAATTTAATTTTTTTTG
64098559 TATAAATTTAATTTTTTTTG
1 TATAAATTTAATTTTTTTTG
64098579 TA
1 TA
64098581 ACATTTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TATAAATTTAATTTTTTTTG
Found at i:64102181 original size:3 final size:3
Alignment explanation
Indices: 64102173--64102204 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
64102163 TCTTAATACT
*
64102173 AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
64102205 TAATAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.28, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:64102196 original size:15 final size:15
Alignment explanation
Indices: 64102176--64102207 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
64102166 TAATACTAAC
64102176 AACAACAACAACAAT
1 AACAACAACAACAAT
64102191 AACAACAACAACAAT
1 AACAACAACAACAAT
64102206 AA
1 AA
64102208 TAATAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (15 bp):
AACAACAACAACAAT
Found at i:64102351 original size:10 final size:11
Alignment explanation
Indices: 64102334--64102362 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
64102324 AAAAAAATAC
64102334 CTTCTTTTTCT
1 CTTCTTTTTCT
64102345 C-TCTTTTTCT
1 CTTCTTTTTCT
64102355 CTTCTTTT
1 CTTCTTTT
64102363 CCGCAGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:64102535 original size:27 final size:27
Alignment explanation
Indices: 64102452--64102536 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
64102442 CCAATGAGTA
64102452 TGGCACCATTGGTGCCGCCAATGACAT
1 TGGCACCATTGGTGCCGCCAATGACAT
* ***
64102479 TGACACCATTGGTGCCGCCAATGGTTT
1 TGGCACCATTGGTGCCGCCAATGACAT
* *
64102506 TGGCACCTTTGGTGCCGCCAATGCCAT
1 TGGCACCATTGGTGCCGCCAATGACAT
64102533 TGGC
1 TGGC
64102537 GTGACAAAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCCAATGACAT
Found at i:64102623 original size:27 final size:27
Alignment explanation
Indices: 64102585--64102656 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
64102575 GCAGTTTTTT
*
64102585 TTAT-ATATTTTGGTAAAT-AAAAAAT
1 TTATAATATTTTGGTAAATAAAAAAAG
*
64102610 TTATATCTATTTTGGTAAATAAAAAAAG
1 TTATA-ATATTTTGGTAAATAAAAAAAG
64102638 TTATAATATTTTGGTAAAT
1 TTATAATATTTTGGTAAAT
64102657 TTTTATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 4 0.10
27 26 0.63
28 11 0.27
ACGTcount: A:0.44, C:0.01, G:0.10, T:0.44
Consensus pattern (27 bp):
TTATAATATTTTGGTAAATAAAAAAAG
Found at i:64103495 original size:22 final size:22
Alignment explanation
Indices: 64103470--64103511 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
64103460 AATTTAAGAG
64103470 TTTTTTAGAAAAAA-ATAATTAA
1 TTTTTTA-AAAAAATATAATTAA
64103492 TTTTTTAAAAAAATATAATT
1 TTTTTTAAAAAAATATAATT
64103512 TTAAATGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
TTTTTTAAAAAAATATAATTAA
Found at i:64107050 original size:27 final size:26
Alignment explanation
Indices: 64107020--64107084 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
64107010 TTTAACAGTA
* *
64107020 ACAGTACAGTGTGGGCCTTAGCCCAAT
1 ACAGTACAGTGT-GACCTAAGCCCAAT
*
64107047 ACAGAAACAGTGTGACCTAAGCCCAAT
1 ACAG-TACAGTGTGACCTAAGCCCAAT
64107074 ACAGTATCAGT
1 ACAGTA-CAGT
64107085 ATGGTGCAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 24 0.75
28 7 0.22
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (26 bp):
ACAGTACAGTGTGACCTAAGCCCAAT
Found at i:64107060 original size:28 final size:27
Alignment explanation
Indices: 64107025--64107077 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
64107015 CAGTAACAGT
* *
64107025 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGT-GACCTAAGCCCAATACAGAA
64107053 ACAGTGTGACCTAAGCCCAATACAG
1 ACAGTGTGACCTAAGCCCAATACAG
64107078 TATCAGTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (27 bp):
ACAGTGTGACCTAAGCCCAATACAGAA
Found at i:64107267 original size:22 final size:21
Alignment explanation
Indices: 64107213--64107275 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
64107203 TGCCAGTAGT
*
64107213 CAGAATGGCTAAGAGCCGTAAA
1 CAGAATGGCTAA-AGCCATAAA
* * *
64107235 CAGGATAGCTATAAGCTATAAA
1 CAGAATGGCTA-AAGCCATAAA
64107257 CAGAATGGCTACAAGCCAT
1 CAGAATGGCTA-AAGCCAT
64107276 CAGTACAGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.17
Consensus pattern (21 bp):
CAGAATGGCTAAAGCCATAAA
Found at i:64107354 original size:32 final size:32
Alignment explanation
Indices: 64107269--64107471 Score: 221
Period size: 32 Copynumber: 6.4 Consensus size: 32
64107259 GAATGGCTAC
* * * *
64107269 AAGCCATCAGT-ACAGTAGTATGATTGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* ** * **
64107300 AAGCCATCAGTAGCAATGATATGGCCGGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
64107332 CAA-CCATCAGTAACGGTAATATGATCGGTACA
1 -AAGCCATCAGTAACGGTAATATGATCGGTACA
* *
64107364 AAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* * **
64107396 AAGCTATAAGTAACGGTAATATGATTAGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* *
64107428 AAGCCATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
64107460 AAGCCATCAGTA
1 AAGCCATCAGTA
64107472 GCATCCCAGC
Statistics
Matches: 141, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
31 13 0.09
32 126 0.89
33 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGGTACA
Found at i:64107545 original size:27 final size:27
Alignment explanation
Indices: 64107515--64107571 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
64107505 AACAAAGCTG
*
64107515 CCAGTAATAGT-ATATGTGGTCA-AGCCA
1 CCAGTAACAGTAAT-TGTGG-CAGAGCCA
64107542 CCAGTAACAGTAATTGTGGCAGAGCCA
1 CCAGTAACAGTAATTGTGGCAGAGCCA
64107569 CCA
1 CCA
64107572 ATATAATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 23 0.85
28 2 0.07
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGTAACAGTAATTGTGGCAGAGCCA
Found at i:64107670 original size:24 final size:23
Alignment explanation
Indices: 64107643--64107724 Score: 83
Period size: 24 Copynumber: 3.5 Consensus size: 23
64107633 CCATGCTCAG
*
64107643 AATCAGTCATTCAAATCACAGACA
1 AATCAATCATTCAAA-CACAGACA
* *
64107667 AATCAATCATACCAAACACAGACG
1 AATCAATCAT-TCAAACACAGACA
* * * *
64107691 AATCAGTCATTTAACCACAGGCA
1 AATCAATCATTCAAACACAGACA
64107714 AATCAATCATT
1 AATCAATCATT
64107725 TGACCTCGAG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 18 0.38
24 25 0.53
25 4 0.09
ACGTcount: A:0.45, C:0.26, G:0.09, T:0.21
Consensus pattern (23 bp):
AATCAATCATTCAAACACAGACA
Found at i:64107796 original size:27 final size:26
Alignment explanation
Indices: 64107764--64107941 Score: 167
Period size: 27 Copynumber: 6.6 Consensus size: 26
64107754 TCACTAGGGC
* *
64107764 ATTACGATCATTTTACCTTACATAGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* *
64107791 ATTACGGTCATTCTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* * * *
64107818 ATTACGATTATTTTACCTTATAGAGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* *
64107845 ATTATGGTTATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAA-GGT
* * *
64107872 AATACGGTCATTTTACCCTACAGGGAC
1 ATTACGGTCATTTTACCCTACAAGG-T
64107899 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAA-GGT
**
64107926 ATTATAGTCATTTTAC
1 ATTACGGTCATTTTAC
64107942 AACCTTTTCA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.02
27 118 0.96
28 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (26 bp):
ATTACGGTCATTTTACCCTACAAGGT
Found at i:64107824 original size:54 final size:53
Alignment explanation
Indices: 64107759--64107929 Score: 207
Period size: 54 Copynumber: 3.2 Consensus size: 53
64107749 TTTACTCACT
* *
64107759 AGGGCATTACGATCATTTTACCTTACATAGGTATTACGGTCATTCTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACA-AGGTATTACGGTCATTTTACCCTACA
* * * * *
64107813 GGGGTATTACGATTATTTTACCTTATAGAGGTATTATGGTTATTTTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACA-AGGTATTACGGTCATTTTACCCTACA
* * * * *
64107867 AGGGTAATACGGTCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACAAGG-TATTACGGTCATTTTACCCTACA
64107921 AGGGTATTA
1 AGGGTATTA
64107930 TAGTCATTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.02
54 95 0.98
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (53 bp):
AGGGTATTACGATCATTTTACCTTACAAGGTATTACGGTCATTTTACCCTACA
Found at i:64107879 original size:81 final size:81
Alignment explanation
Indices: 64107771--64107941 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
64107761 GGCATTACGA
* * ** * *
64107771 TCATTTTACCTTACATAGGTATTACGGTCATTCTACCCTACAGGGGTATTACGATTATTTTACCT
1 TCATTTTACCCTACATAGGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACCC
* *
64107836 TA-TAGAGGTATTATGG
66 TACAAG-GGTATTATAG
* * *
64107852 TTATTTTACCCTACA-AGGGTAATACGGTCATTTTACCCTACAGGGACATTACGGTCATTTTACC
1 TCATTTTACCCTACATA-GGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACC
64107916 CTACAAGGGTATTATAG
65 CTACAAGGGTATTATAG
64107933 TCATTTTAC
1 TCATTTTAC
64107942 AACCTTTTCA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 73 0.96
82 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (81 bp):
TCATTTTACCCTACATAGGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACCC
TACAAGGGTATTATAG
Found at i:64119037 original size:18 final size:18
Alignment explanation
Indices: 64119016--64119053 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
64119006 CTTCTACCCT
64119016 TTCCCCTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
*
64119034 TTCCCTTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
64119052 TT
1 TT
64119054 GGATTGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (18 bp):
TTCCCCTTTCCCTTCCCC
Found at i:64119147 original size:25 final size:25
Alignment explanation
Indices: 64119113--64119162 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
64119103 CAGGTAAGGC
*
64119113 TCCTTCTTCTTCTTCCGTTTTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
* *
64119138 TCCTTTTTCTTCTTCTGTTCTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
64119163 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.30, G:0.04, T:0.62
Consensus pattern (25 bp):
TCCTTCTTCTTCTTCCGTTCTTCAT
Found at i:64122532 original size:15 final size:15
Alignment explanation
Indices: 64122493--64122545 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
64122483 GAACATTTGG
64122493 AATTTAATTAGATAAAA
1 AATTT-ATTA-ATAAAA
64122510 AACTTTTATTAATAAAA
1 AA--TTTATTAATAAAA
*
64122527 AATTTATTTATAAATA
1 AATTTATTAATAAA-A
64122543 AAT
1 AAT
64122546 CATTGCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 10 0.31
18 4 0.12
19 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATTTATTAATAAAA
Found at i:64122600 original size:22 final size:21
Alignment explanation
Indices: 64122576--64122619 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
64122566 TAATTTAAAA
*
64122576 TATAAAAATTTATTA-ATATG
1 TATATAAATTTATTAGATATG
64122596 TATATAAATTTATTAGTATATG
1 TATATAAATTTATTAG-ATATG
64122618 TA
1 TA
64122620 AAAACAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
22 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (21 bp):
TATATAAATTTATTAGATATG
Found at i:64122738 original size:20 final size:20
Alignment explanation
Indices: 64122713--64122752 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
64122703 AATATTTTCC
*
64122713 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
64122733 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
64122753 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:64122758 original size:34 final size:35
Alignment explanation
Indices: 64122701--64122767 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
64122691 CAAACACTAG
*
64122701 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
64122736 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
64122768 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:64122759 original size:14 final size:14
Alignment explanation
Indices: 64122736--64122775 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
64122726 ACAGAAAAGT
*
64122736 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
64122750 AAATCATTTTACGG
1 AAAACATTTTACAG
64122764 AAAACATTTTAC
1 AAAACATTTTAC
64122776 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:64130593 original size:12 final size:12
Alignment explanation
Indices: 64130576--64130600 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64130566 AAATTTGATG
64130576 TTGTTATTATTA
1 TTGTTATTATTA
64130588 TTGTTATTATTA
1 TTGTTATTATTA
64130600 T
1 T
64130601 AATTGCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGTTATTATTA
Found at i:64132641 original size:109 final size:109
Alignment explanation
Indices: 64132428--64132858 Score: 645
Period size: 109 Copynumber: 4.0 Consensus size: 109
64132418 AAGGAAAATT
* * * * *
64132428 TTTCTAAATGAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
64132493 CGATTTTTCTCATTCAACCAAATAGCTAAGTATCCTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
* * *
64132537 TTTCAAAATAAGACAATGTTTTGCGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * * *
64132602 TGATTTTTCTCGTTCAACCAAATAGCTAAGTATCCTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
*
64132646 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
64132711 CGATTTTTCTCATTTAACCAAATAGCCAAATATCCTTTCAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
*
64132755 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
64132819 CGATTTCTTGT--TT-AACCAAATAGCCAAATATCCTCTTAAA
66 CGATTT-TTCTCATTCAACCAAATAGCCAAATATCCTTTTAAA
64132859 TTTTAATCCA
Statistics
Matches: 296, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
106 25 0.08
107 2 0.01
108 29 0.10
109 240 0.81
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:64137336 original size:3 final size:3
Alignment explanation
Indices: 64137328--64137353 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
64137318 TTCAGAAGCT
64137328 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
64137354 TTTGTGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:64148477 original size:25 final size:25
Alignment explanation
Indices: 64148426--64148477 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
64148416 ATAATGATAT
* * * *
64148426 ATCCTGATAATGAAATGTTATTTTG
1 ATCCTGATAATCAAATATAATTCTG
64148451 ATCCTGATAATCAAATATAATTCTG
1 ATCCTGATAATCAAATATAATTCTG
64148476 AT
1 AT
64148478 TTTGATCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (25 bp):
ATCCTGATAATCAAATATAATTCTG
Found at i:64158443 original size:41 final size:41
Alignment explanation
Indices: 64158381--64158515 Score: 207
Period size: 41 Copynumber: 3.3 Consensus size: 41
64158371 AATTTAACAT
* * *
64158381 ATTCAGATCACCGGCACTTAGCCTGTTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
* * * *
64158422 ATTCATATCACCGACATTTAGCCTACTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
64158463 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
64158504 ATTCAGATCACC
1 ATTCAGATCACC
64158516 AATTCCAAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
Found at i:64158730 original size:41 final size:41
Alignment explanation
Indices: 64158685--64158779 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
64158675 TTCGTTCCTT
64158685 TGATTCAGATCACCGGCACTTAGCCTGCTAAGCTTATAGCC
1 TGATTCAGATCACCGGCACTTAGCCTGCTAAGCTTATAGCC
*
64158726 TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
1 TGATTCAGATCACCGGCACTTAGCCTGCTAAGCTTATAGCC
*
64158767 CGATTCAGATCAC
1 TGATTCAGATCAC
64158780 AAATTTCAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (41 bp):
TGATTCAGATCACCGGCACTTAGCCTGCTAAGCTTATAGCC
Done.