Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 215 of 222
Found at i:67914201 original size:18 final size:18
Alignment explanation
Indices: 67914175--67914212 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
67914165 ATCCCAATGA
* *
67914175 TCGCCACCACCTTCTTCT
1 TCGCAACCACATTCTTCT
67914193 TCGCAACCACATTCTTCT
1 TCGCAACCACATTCTTCT
67914211 TC
1 TC
67914213 ACCACCAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.45, G:0.05, T:0.34
Consensus pattern (18 bp):
TCGCAACCACATTCTTCT
Found at i:67914219 original size:18 final size:18
Alignment explanation
Indices: 67914178--67914219 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
67914168 CCAATGATCG
* *
67914178 CCACCACCTTCTTCTTCG
1 CCACCACATTCTTCTTCA
*
67914196 CAACCACATTCTTCTTCA
1 CCACCACATTCTTCTTCA
67914214 CCACCA
1 CCACCA
67914220 ACCATATCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (18 bp):
CCACCACATTCTTCTTCA
Found at i:67915471 original size:28 final size:28
Alignment explanation
Indices: 67915438--67915492 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
67915428 TTTTTTTTAT
*
67915438 ATATTTTGGTAAATAAAAAAATTTATAA
1 ATATTTTGGTAAATAAAAAAAATTATAA
67915466 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
67915493 GCATTTTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAATTATAA
Found at i:67915498 original size:27 final size:28
Alignment explanation
Indices: 67915440--67915504 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
67915430 TTTTTTATAT
* *
67915440 ATTTTGGTAAATAAAAAAATTTATAAAT
1 ATTTTGGTAAATAAAAAAAATTATAAAC
*
67915468 ATTTTGGTAAATAAAAAAAATTAT-AGC
1 ATTTTGGTAAATAAAAAAAATTATAAAC
67915495 ATTTTGGTAA
1 ATTTTGGTAA
67915505 TTTTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 11 0.32
28 23 0.68
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (28 bp):
ATTTTGGTAAATAAAAAAAATTATAAAC
Found at i:67923601 original size:31 final size:30
Alignment explanation
Indices: 67923564--67923644 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 30
67923554 TACAAGCTAG
67923564 TGACTTAAATAGAAACTTTTAAATAGTTAAA
1 TGACTTAAAT-GAAACTTTTAAATAGTTAAA
* * *
67923595 TGACTTAAATGAAAATTTTTGAATAGTTTAA
1 TGACTTAAATG-AAACTTTTAAATAGTTAAA
*
67923626 TGAC-TAAATTGTAACTTTT
1 TGACTTAAA-TGAAACTTTT
67923645 TTAATTAAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
30 11 0.26
31 32 0.74
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (30 bp):
TGACTTAAATGAAACTTTTAAATAGTTAAA
Found at i:67927343 original size:21 final size:19
Alignment explanation
Indices: 67927319--67927357 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
67927309 GATTATATTC
67927319 AAATTATTAAAAAAAGTATAA
1 AAATTA-TAAAAAAA-TATAA
67927340 AAATTATAAAAAAATATA
1 AAATTATAAAAAAATATA
67927358 TTTTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
AAATTATAAAAAAATATAA
Found at i:67930452 original size:3 final size:3
Alignment explanation
Indices: 67930444--67930468 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67930434 AAGGCGGAAA
67930444 CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC C
67930469 GCCGCCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:67933877 original size:8 final size:9
Alignment explanation
Indices: 67933858--67933910 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
67933848 AATTTATTTT
67933858 AAAAATTAA
1 AAAAATTAA
67933867 AAAAATTAA
1 AAAAATTAA
**
67933876 AAAATATATTT
1 AAAA-AT-TAA
*
67933887 TAAAATTAA
1 AAAAATTAA
*
67933896 AAAAATTTA
1 AAAAATTAA
67933905 AAAAAT
1 AAAAAT
67933911 AAATATATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
9 27 0.77
10 4 0.11
11 4 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAAATTAA
Found at i:67933886 original size:30 final size:30
Alignment explanation
Indices: 67933845--67933911 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
67933835 ATAAAATACC
*
67933845 AAAAATTTATTTTAAAAATTAAAAAAA-TTA
1 AAAAATATATTTT-AAAATTAAAAAAATTTA
67933875 AAAAATATATTTTAAAATTAAAAAAATTTA
1 AAAAATATATTTTAAAATTAAAAAAATTTA
67933905 AAAAATA
1 AAAAATA
67933912 AATATATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 13 0.37
30 22 0.63
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAAATATATTTTAAAATTAAAAAAATTTA
Found at i:67933920 original size:17 final size:17
Alignment explanation
Indices: 67933877--67933921 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
67933867 AAAAATTAAA
* *
67933877 AAATATATTTTAAAATT
1 AAATATATTTAAAAAAT
* *
67933894 AAAAAAATTTAAAAAAT
1 AAATATATTTAAAAAAT
67933911 AAATATATTTA
1 AAATATATTTA
67933922 TTATATTGGG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATATTTAAAAAAT
Found at i:67936073 original size:16 final size:17
Alignment explanation
Indices: 67936052--67936094 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
67936042 AGGGTGTAGT
67936052 AAAAAATA-AAAAATAA
1 AAAAAATATAAAAATAA
*
67936068 AAAAAATATAAATAT-A
1 AAAAAATATAAAAATAA
*
67936084 AATAAATATAA
1 AAAAAATATAA
67936095 TACTTGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATATAAAAATAA
Found at i:67936920 original size:10 final size:11
Alignment explanation
Indices: 67936903--67936972 Score: 51
Period size: 10 Copynumber: 6.7 Consensus size: 11
67936893 AGGCCTGTTC
67936903 ATATTATTTTT
1 ATATTATTTTT
67936914 A-ATTATTTTT
1 ATATTATTTTT
*
67936924 ATATTA-TATT
1 ATATTATTTTT
* *
67936934 ATTTTAATATTT
1 ATATT-ATTTTT
67936946 A-ATTA-TTTT
1 ATATTATTTTT
**
67936955 ATACAATTTTT
1 ATATTATTTTT
67936966 AT-TTATT
1 ATATTATT
67936973 AAAATTTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 11
0.68 0.15 0.17
Matches are distributed among these distances:
9 4 0.09
10 23 0.52
11 14 0.32
12 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:67936932 original size:26 final size:27
Alignment explanation
Indices: 67936903--67936972 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 27
67936893 AGGCCTGTTC
67936903 ATATTATTTTTAATTATTT-TTATATT
1 ATATTATTTTTAATTATTTATTATATT
*
67936929 ATATTA-TTTTAA-TATTTAATTATTTT
1 ATATTATTTTTAATTATTT-ATTATATT
** *
67936955 ATACAATTTTTATTTATT
1 ATATTATTTTTAATTATT
67936973 AAAATTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 5 0.14
25 6 0.17
26 16 0.44
27 5 0.14
28 4 0.11
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (27 bp):
ATATTATTTTTAATTATTTATTATATT
Found at i:67936934 original size:16 final size:16
Alignment explanation
Indices: 67936911--67936955 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
67936901 TCATATTATT
*
67936911 TTTAATTATTTTTATA
1 TTTAATTATTTTAATA
67936927 -TTATATTATTTTAATA
1 TTTA-ATTATTTTAATA
67936943 TTTAATTATTTTA
1 TTTAATTATTTTA
67936956 TACAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 3 0.12
16 20 0.77
17 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTAATTATTTTAATA
Found at i:67939835 original size:6 final size:6
Alignment explanation
Indices: 67939824--67939852 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
67939814 GTAATAGGAG
67939824 AGAGAT AGAGAT AGAGAT AGAGAT AGAGA
1 AGAGAT AGAGAT AGAGAT AGAGAT AGAGA
67939853 GAGAACAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.34, T:0.14
Consensus pattern (6 bp):
AGAGAT
Found at i:67948161 original size:27 final size:28
Alignment explanation
Indices: 67948109--67948171 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
67948099 TCGGTCAGGG
*
67948109 TCGGTTAATAATTTTTTGAAAGTTCGGT
1 TCGGTTAATAATTTTTTGAAAGTTCGAT
* * *
67948137 TCGGTTAAT-TTTTTTTTAAATTTCGAT
1 TCGGTTAATAATTTTTTGAAAGTTCGAT
*
67948164 TTGGTTAA
1 TCGGTTAA
67948172 CAGTTTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 21 0.70
28 9 0.30
ACGTcount: A:0.24, C:0.06, G:0.17, T:0.52
Consensus pattern (28 bp):
TCGGTTAATAATTTTTTGAAAGTTCGAT
Found at i:67948817 original size:6 final size:6
Alignment explanation
Indices: 67948806--67948832 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
67948796 AGAAATTGAT
67948806 GCTCAA GCTCAA GCTCAA GCTCAA GCT
1 GCTCAA GCTCAA GCTCAA GCTCAA GCT
67948833 TATCACTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.19
Consensus pattern (6 bp):
GCTCAA
Found at i:67953837 original size:30 final size:31
Alignment explanation
Indices: 67953803--67953862 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
67953793 AAAAATCCGA
*
67953803 AAGCTCTAACTA-AATTTTTAAAACTTTTGG
1 AAGCTCTAACTAGAAATTTTAAAACTTTTGG
* * *
67953833 AAGCTTTAATTAGAAATTTTAAAAGTTTTG
1 AAGCTCTAACTAGAAATTTTAAAACTTTTG
67953863 AAGGACCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (31 bp):
AAGCTCTAACTAGAAATTTTAAAACTTTTGG
Found at i:67956175 original size:23 final size:24
Alignment explanation
Indices: 67956134--67956182 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
67956124 GGTCCACGTG
67956134 TATTAATAATTATATATTTTTATAA
1 TATTAATAA-TATATATTTTTATAA
*
67956159 TATTAATAA-ATATATTTTTTTAA
1 TATTAATAATATATATTTTTATAA
67956182 T
1 T
67956183 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.61
25 9 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TATTAATAATATATATTTTTATAA
Found at i:67961633 original size:18 final size:20
Alignment explanation
Indices: 67961591--67961635 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
67961581 AAAATTTCAT
67961591 TTATAAAATTATATATTAAA
1 TTATAAAATTATATATTAAA
67961611 -T-TAAAATT-TATA-TAAA
1 TTATAAAATTATATATTAAA
67961627 TTATAAAAT
1 TTATAAAAT
67961636 AATGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 13 0.57
19 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATAAAATTATATATTAAA
Found at i:67968403 original size:31 final size:31
Alignment explanation
Indices: 67968368--67968432 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
67968358 AATAGCTCAA
* *
67968368 TGACTTAGATAAAAACTTTTGTATAGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
* *
67968399 TGACTTAAATGAAAACTTTTGAATGGTTTAG
1 TGACTTAAATAAAAACTTTTGAATAGTTTAG
67968430 TGA
1 TGA
67968433 TCAATTTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.40
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTGAATAGTTTAG
Found at i:67984278 original size:51 final size:51
Alignment explanation
Indices: 67984213--67984321 Score: 141
Period size: 51 Copynumber: 2.1 Consensus size: 51
67984203 TGTGCAAATG
* * *
67984213 TTGACAGAATATGTAAATGTTGTAGGTT-AATTTCGTTAAATC-GTGATTAAA
1 TTGACAGAACATGTAAATGTTATAGGTTAAATTT-GTTAAATCAATG-TTAAA
* *
67984264 TTGACAGAACATGTAAGTGTTATGGGTTAAATTTGTTAAATCAATGTTAAA
1 TTGACAGAACATGTAAATGTTATAGGTTAAATTTGTTAAATCAATGTTAAA
67984315 TTGACAG
1 TTGACAG
67984322 GAAGTATAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
51 44 0.86
52 7 0.14
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (51 bp):
TTGACAGAACATGTAAATGTTATAGGTTAAATTTGTTAAATCAATGTTAAA
Found at i:67985483 original size:15 final size:16
Alignment explanation
Indices: 67985458--67985496 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
67985448 ATATATTATA
67985458 TTCTTTCAAATTA-CTT
1 TTCTTT-AAATTATCTT
*
67985474 TTCTTTAAATTATTTT
1 TTCTTTAAATTATCTT
67985490 TTCTTTA
1 TTCTTTA
67985497 TTTTAATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (16 bp):
TTCTTTAAATTATCTT
Found at i:67988361 original size:210 final size:215
Alignment explanation
Indices: 67987585--67988632 Score: 1499
Period size: 210 Copynumber: 4.9 Consensus size: 215
67987575 CTGTGAGCCT
* **
67987585 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAGTATATATCCAT-TTGTATATCTCAATATA
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATAT--ATATTCCATATCTC-ATATA
* ** *
67987649 TATATATAACATACGCCTGTCTAGTTAGAATATTTGGACAAGTTGTCGGCCACCTTATCTGTAAA
63 TATATAT-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAA
* * *
67987714 ATGTGATCATTTTGGCGAATATTCCATATTTAAGAACTTTCCTGGAAAA-TTTCTGAAACTATGA
127 ATGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGA
*
67987778 CCCATCAAGGCTCTTGGCAGAATCG
191 CCCATCAAGGCTCTTAGCAGAATCG
* **
67987803 TGAGATAAAACCTGAAGCAGAATTGAGACACATCAATATATATATCCATTTGTATATCTCA-ATA
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATAT--A-TTCCATATCTCATATA
* * *
67987867 TATATATACAGACGCATGTGTAGTTAGAATATTTGGACAAGTTGTCCTCTACCTTATCTGTAAAA
63 TATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAA
* *
67987932 TGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCT-TAACTATGACC
128 TGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACC
*
67987996 CATCAAGGCTCTTAGCAGAATGG
193 CATCAAGGCTCTTAGCAGAATCG
* * * **
67988019 TGAGATAAAACCCGAAGCAGAATTGCGACACTTCAATATGTATCCA-ATTGTATATCTCA-ATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATAT--ATATTCCATATCTCATATAT
* *
67988082 ATATATACATAGGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
64 ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
*
67988147 GTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
129 GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
* *
67988212 ATCAAGACTCTTAGCAGAGTCG
194 ATCAAGGCTCTTAGCAGAATCG
* * *
67988234 TGAGATAGAACCCGAAGCAGAGTTGAGACACATCAATATATATATA-TCCAT-T-T-GT-TATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATATTCCATATCTCATATATAT
*
67988294 ATATACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATCTACCTTATCTGTAAAATGT
66 ATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAATGT
*
67988359 GATCATTTTAGCAAATATTCCATCTTAAGAACTTTGCTGGAAAATTTTCTGAAACTATGACCCAT
131 GATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCCAT
*
67988424 CAAGGCTCTTAGCAGAGTCG
196 CAAGGCTCTTAGCAGAATCG
* * **
67988444 TGAGATAAAACCCAAAGCAGAATTGAGCCACATCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATAT--A-TTCCATATCTC-ATAT
* *
67988509 ATATATATACATACGCGTGTCTAGTTAGAAT-TTTGGACAAGTTGTCATCAACCTTATCTGTAAA
62 ATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAA
*
67988573 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACT
127 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACT
67988633 TTTTTTTCCC
Statistics
Matches: 755, Mismatches: 56, Indels: 38
0.89 0.07 0.04
Matches are distributed among these distances:
210 190 0.25
211 1 0.00
212 2 0.00
213 4 0.01
214 130 0.17
215 70 0.09
216 92 0.12
217 81 0.11
218 142 0.19
219 32 0.04
220 11 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (215 bp):
TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATATATTCCATATCTCATATATAT
ATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTACCTTATCTGTAAAATGT
GATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCCAT
CAAGGCTCTTAGCAGAATCG
Found at i:67988515 original size:431 final size:426
Alignment explanation
Indices: 67987585--67988632 Score: 1613
Period size: 431 Copynumber: 2.4 Consensus size: 426
67987575 CTGTGAGCCT
*
67987585 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAGTATATATCCATTTGTATATCTCAATATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATCCATTTGTATATCTCAATATAT
* ** *
67987650 ATATATAACATACGCCTGTCTAGTTAGAATATTTGGACAAGTTGTCGGCCACCTTATCTGTAAAA
66 ATATAT-ACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCAACCTTATCTGTAAAA
* * *
67987715 TGTGATCATTTTGGCGAATATTCCATATTTAAGAACTTTCCTGGAAAA-TTTCTGAAACTATGAC
130 TGTGATCATTTTAGCAAATATTCCAT-CTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGAC
* * *
67987779 CCATCAAGGCTCTTGGCAGAATCGTGAGATAAAACCTGAAGCAGAATTGAGACACATCAATATAT
194 CCATCAAGACTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATAT
*
67987844 ATATCCATTTGTATATCTCAATATATATATACAGACGCATGTGTAGTTAGAATATTTGGACAAGT
259 ATATCCATTTG----T-T--ATATATATATACAGACGCATGTCTAGTTAGAATATTTGGACAAGT
*
67987909 TGTCCTCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTG
317 TGTCATCTACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTG
* * *
67987974 GAAATTTTTCTTAACTATGACCCATCAAGGCTCTTAGCAGAATGG
382 GAAAATTTTCTAAACTATGACCCATCAAGGCTCTTAGCAGAATCG
* * * *
67988019 TGAGATAAAACCCGAAGCAGAATTGCGACACTTCAATATGTATCCAATTGTATATCTC-A-ATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATCCATTTGTATATCTCAATATAT
* * *
67988082 ATATATACATAGGCATGTCTAGTTAGACTATTTGGACAAGTTGTCATCTACCTTATCTGTAAAAT
66 ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCAACCTTATCTGTAAAAT
*
67988147 GTGATTATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
131 GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
* * *
67988212 ATCAAGACTCTTAGCAGAGTCGTGAGATAGAACCCGAAGCAGAGTTGAGACACATCAATATATAT
196 ATCAAGACTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATC-A-ATATAT
* *
67988277 ATATCCATTTG-T-TATATATATACATACGCATGTCTAGTTAGAATATTTGGTCAAGTTGTCATC
259 ATATCCATTTGTTATATATATATACAGACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATC
*
67988340 TACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTGCTGGAAAATT
324 TACCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATT
*
67988405 TTCTGAAACTATGACCCATCAAGGCTCTTAGCAGAGTCG
389 TTCT-AAACTATGACCCATCAAGGCTCTTAGCAGAATCG
* *
67988444 TGAGATAAAACCCAAAGCAGAATTGAGCCACATCAATATATATATCCATTTGTATATCTCAATAT
1 TGAGATAAAACCCGAAGCAGAATTGAGACACATC-A-ATATATATCCATTTGTATATCTCAATAT
*
67988509 ATATATATACATACGCGTGTCTAGTTAGAAT-TTTGGACAAGTTGTCATCAACCTTATCTGTAAA
64 ATATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCAACCTTATCTGTAAA
*
67988573 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAATTTTTCTGAAACT
129 ATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACT
67988633 TTTTTTTCCC
Statistics
Matches: 564, Mismatches: 42, Indels: 22
0.90 0.07 0.04
Matches are distributed among these distances:
424 114 0.20
425 61 0.11
426 1 0.00
427 22 0.04
428 91 0.16
429 30 0.05
430 20 0.04
431 143 0.25
432 11 0.02
433 18 0.03
434 53 0.09
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (426 bp):
TGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATATCCATTTGTATATCTCAATATAT
ATATATACATACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCAACCTTATCTGTAAAAT
GTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTTCTGAAACTATGACCC
ATCAAGACTCTTAGCAGAATCGTGAGATAAAACCCGAAGCAGAATTGAGACACATCAATATATAT
ATCCATTTGTTATATATATATACAGACGCATGTCTAGTTAGAATATTTGGACAAGTTGTCATCTA
CCTTATCTGTAAAATGTGATCATTTTAGCAAATATTCCATCTTAAGAACTTTCCTGGAAAATTTT
CTAAACTATGACCCATCAAGGCTCTTAGCAGAATCG
Found at i:67989209 original size:37 final size:37
Alignment explanation
Indices: 67989168--67989243 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
67989158 ACGGATTAAA
67989168 TTACTTCAAA-TTTTTTAGAGGATTCAATATGCTCAAT
1 TTACTT-AAATTTTTTTAGAGGATTCAATATGCTCAAT
*
67989205 TTACTTAAATTTTTTTAGAGGATTCAATATGTTCAAT
1 TTACTTAAATTTTTTTAGAGGATTCAATATGCTCAAT
67989242 TT
1 TT
67989244 TAAAATTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (37 bp):
TTACTTAAATTTTTTTAGAGGATTCAATATGCTCAAT
Found at i:67992114 original size:28 final size:29
Alignment explanation
Indices: 67992049--67992118 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
67992039 AGTTTCAAGT
67992049 TCCTTAAAAGTTGAAGAAAAAAAAATTTGG
1 TCCTTAAAAGTTG-AGAAAAAAAAATTTGG
* *
67992079 TCCCTAAAAGTTG-GTAAAAAAAATTTGG
1 TCCTTAAAAGTTGAGAAAAAAAAATTTGG
67992107 -CCTTTAAAAGTT
1 TCC-TTAAAAGTT
67992119 AAAAATAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 2 0.06
28 22 0.61
30 12 0.33
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (29 bp):
TCCTTAAAAGTTGAGAAAAAAAAATTTGG
Found at i:67993839 original size:94 final size:89
Alignment explanation
Indices: 67993680--67993872 Score: 269
Period size: 94 Copynumber: 2.1 Consensus size: 89
67993670 TAAATAATAA
* * **
67993680 AATTGCACATCCTATTTGATATTTTTGAGCAAAAGAAAAGAAAAGAATAATGACCTTGGATACAT
1 AATTGCACATCCTATATGATATTTTTGAGCAAAAGAAAAGAAAAGAATAATAACCTTAAATACAT
*
67993745 GGTATTAGAGCGACTTATGATTGC
66 GGTATTAGAGCGACCTATGATTGC
* *
67993769 AATTGCACATCCTATATGATATTTTTTTAGCAAAAAAAAGAAGAGAAAAGAATAATAACCTTAAA
1 AATTGCACATCCTATATGATA-TTTTTGAGC----AAAAGAAAAGAAAAGAATAATAACCTTAAA
67993834 TACATGGTATTAGAGCGACCTATGATTGC
61 TACATGGTATTAGAGCGACCTATGATTGC
*
67993863 AATTCCACAT
1 AATTGCACAT
67993873 TGACTTCCCA
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
89 20 0.22
90 8 0.09
94 63 0.69
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (89 bp):
AATTGCACATCCTATATGATATTTTTGAGCAAAAGAAAAGAAAAGAATAATAACCTTAAATACAT
GGTATTAGAGCGACCTATGATTGC
Found at i:67997819 original size:18 final size:17
Alignment explanation
Indices: 67997792--67997828 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
67997782 ATTTTTTATT
67997792 TTAAAAAATATTTAAAA
1 TTAAAAAATATTTAAAA
*
67997809 TTAATAAAATATTTATAA
1 TTAA-AAAATATTTAAAA
67997827 TT
1 TT
67997829 TTCAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAAAAAATATTTAAAA
Found at i:67997936 original size:13 final size:14
Alignment explanation
Indices: 67997920--67997961 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
67997910 TTTTAATTTT
67997920 ATTTTAAAAATA-A
1 ATTTTAAAAATATA
*
67997933 ATTTGAAAAATAATA
1 ATTTTAAAAAT-ATA
67997948 ATTTTAAATAATAT
1 ATTTTAAA-AATAT
67997962 TCTTCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (14 bp):
ATTTTAAAAATATA
Found at i:68006443 original size:21 final size:20
Alignment explanation
Indices: 68006417--68006456 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
68006407 AACACTTTTT
68006417 TGTTGAAAATTTTATATTATA
1 TGTTGAAAATTTTA-ATTATA
68006438 TGTTGAAAATTTTAATTAT
1 TGTTGAAAATTTTAATTAT
68006457 CAATAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (20 bp):
TGTTGAAAATTTTAATTATA
Found at i:68009134 original size:20 final size:21
Alignment explanation
Indices: 68009111--68009160 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
68009101 AATGTTTGAT
68009111 GTTTAGGGTTTGAG-TTTAAG
1 GTTTAGGGTTTGAGATTTAAG
* *
68009131 GTTTTGGGTTTGAGATTTATG
1 GTTTAGGGTTTGAGATTTAAG
68009152 GTTTAGGGT
1 GTTTAGGGT
68009161 AAAAAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (21 bp):
GTTTAGGGTTTGAGATTTAAG
Found at i:68011420 original size:30 final size:30
Alignment explanation
Indices: 68011385--68011517 Score: 169
Period size: 30 Copynumber: 4.4 Consensus size: 30
68011375 CCCCCAGTTT
* *
68011385 CAACTCCTCCACCCAG-TTCTCCTCCTCCTG
1 CAACTCCACCA-CCAGCTTCTCCACCTCCTG
* *
68011415 CAACTCCACCACCTGCTTCTCCTCCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCTG
*
68011445 CAACTCCACCTCCAGCTTCTCCACCTCCTG
1 CAACTCCACCACCAGCTTCTCCACCTCCTG
* * *
68011475 CCACTCCTCCACCAGCTTCTCCACCTCCCG
1 CAACTCCACCACCAGCTTCTCCACCTCCTG
*
68011505 CCACTCCACCACC
1 CAACTCCACCACC
68011518 TGCAACCCCA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 3 0.03
30 89 0.97
ACGTcount: A:0.15, C:0.56, G:0.06, T:0.23
Consensus pattern (30 bp):
CAACTCCACCACCAGCTTCTCCACCTCCTG
Found at i:68011421 original size:15 final size:15
Alignment explanation
Indices: 68011403--68011550 Score: 107
Period size: 15 Copynumber: 9.9 Consensus size: 15
68011393 CCACCCAGTT
*
68011403 CTCCTCCTCCTGCAA
1 CTCCACCTCCTGCAA
* **
68011418 CTCCACCACCTGCTT
1 CTCCACCTCCTGCAA
*
68011433 CTCCTCCTCCTGCAA
1 CTCCACCTCCTGCAA
* **
68011448 CTCCACCTCCAGCTT
1 CTCCACCTCCTGCAA
*
68011463 CTCCACCTCCTGCCA
1 CTCCACCTCCTGCAA
* * * **
68011478 CTCCTCCACCAGCTT
1 CTCCACCTCCTGCAA
* *
68011493 CTCCACCTCCCGCCA
1 CTCCACCTCCTGCAA
*
68011508 CTCCACCACCTGCAA
1 CTCCACCTCCTGCAA
* * *
68011523 CCCCACCGCCAGCAA
1 CTCCACCTCCTGCAA
*
68011538 CTCCTCCTCCTGC
1 CTCCACCTCCTGC
68011551 TACCCCACCA
Statistics
Matches: 98, Mismatches: 35, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 98 1.00
ACGTcount: A:0.15, C:0.57, G:0.07, T:0.21
Consensus pattern (15 bp):
CTCCACCTCCTGCAA
Found at i:68011439 original size:45 final size:45
Alignment explanation
Indices: 68011387--68011520 Score: 121
Period size: 45 Copynumber: 3.0 Consensus size: 45
68011377 CCCAGTTTCA
* * *
68011387 ACTCCTCCACCCAGTTCTCCTCCTCCTGCAACTCCACCACCTGCT
1 ACTCCTCCACCCAGTTCTCCACCTCCAGCAACTCCACCACCTGCC
* * * ** *
68011432 TCTCCTCCTCCTGCA--ACTCCACCTCCAGCTTCTCCACCTCCTGCC
1 ACTCCTCCACC--CAGTTCTCCACCTCCAGCAACTCCACCACCTGCC
* *
68011477 ACTCCTCCA-CCAGCTTCTCCACCTCCCGCCACTCCACCACCTGC
1 ACTCCTCCACCCAG-TTCTCCACCTCCAGCAACTCCACCACCTGC
68011521 AACCCCACCG
Statistics
Matches: 68, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.03
44 1 0.01
45 63 0.93
47 2 0.03
ACGTcount: A:0.14, C:0.56, G:0.07, T:0.23
Consensus pattern (45 bp):
ACTCCTCCACCCAGTTCTCCACCTCCAGCAACTCCACCACCTGCC
Found at i:68011529 original size:30 final size:30
Alignment explanation
Indices: 68011465--68011565 Score: 103
Period size: 30 Copynumber: 3.4 Consensus size: 30
68011455 TCCAGCTTCT
* * * *
68011465 CCACCTCCTGCCACTCCTCCACCAGCTTCT
1 CCACCTCCAGCCACTCCTCCACCTGCTACC
* * *
68011495 CCACCTCCCGCCACTCCACCACCTGCAACC
1 CCACCTCCAGCCACTCCTCCACCTGCTACC
* * *
68011525 CCACCGCCAGCAACTCCTCCTCCTGCTACC
1 CCACCTCCAGCCACTCCTCCACCTGCTACC
*
68011555 CCACCACCAGC
1 CCACCTCCAGC
68011566 TCCATTGGCT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.18, C:0.59, G:0.08, T:0.15
Consensus pattern (30 bp):
CCACCTCCAGCCACTCCTCCACCTGCTACC
Found at i:68011535 original size:45 final size:45
Alignment explanation
Indices: 68011403--68011562 Score: 122
Period size: 45 Copynumber: 3.6 Consensus size: 45
68011393 CCACCCAGTT
* * * ** * * * *
68011403 CTCCTCCTCCTGCAACTCCACCACCTGCTTCTCCTCCTCCTGCAA
1 CTCCACCTCCAGCTACTCCACCACCTGCAACCCCACCACCAGCAA
* * * * * **
68011448 CTCCACCTCCAGCTTCTCCACCTCCTGCCACTCCTCCACCAGCTT
1 CTCCACCTCCAGCTACTCCACCACCTGCAACCCCACCACCAGCAA
* * *
68011493 CTCCACCTCCCGCCACTCCACCACCTGCAACCCCACCGCCAGCAA
1 CTCCACCTCCAGCTACTCCACCACCTGCAACCCCACCACCAGCAA
* * *
68011538 CTCCTCCTCCTGCTACCCCACCACC
1 CTCCACCTCCAGCTACTCCACCACC
68011563 AGCTCCATTG
Statistics
Matches: 90, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.16, C:0.57, G:0.07, T:0.20
Consensus pattern (45 bp):
CTCCACCTCCAGCTACTCCACCACCTGCAACCCCACCACCAGCAA
Found at i:68019832 original size:20 final size:21
Alignment explanation
Indices: 68019807--68019845 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68019797 TTTCAACTAC
*
68019807 AATTTAA-TTCCAAAACCAAA
1 AATTTAATTTACAAAACCAAA
68019827 AATTTAATTTACAAAACCA
1 AATTTAATTTACAAAACCA
68019846 TGAAAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (21 bp):
AATTTAATTTACAAAACCAAA
Found at i:68023525 original size:13 final size:13
Alignment explanation
Indices: 68023507--68023532 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68023497 TTGTCCTAGT
68023507 GATTAAATTAAAA
1 GATTAAATTAAAA
68023520 GATTAAATTAAAA
1 GATTAAATTAAAA
68023533 ATAAGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
GATTAAATTAAAA
Found at i:68026496 original size:16 final size:16
Alignment explanation
Indices: 68026477--68026509 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
68026467 AATTATGAAA
*
68026477 ATGTAAAAATCTATGT
1 ATGTAAAAATATATGT
68026493 ATGTAAAAATATATGT
1 ATGTAAAAATATATGT
68026509 A
1 A
68026510 AAAATGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.36
Consensus pattern (16 bp):
ATGTAAAAATATATGT
Found at i:68026687 original size:15 final size:17
Alignment explanation
Indices: 68026666--68026703 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
68026656 TATACAAGGA
68026666 TATATAAA-TAAATAAG
1 TATATAAAGTAAATAAG
*
68026682 -ATATAAAGTATATAAG
1 TATATAAAGTAAATAAG
68026698 TATATA
1 TATATA
68026704 TTTATGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 7 0.37
16 7 0.37
17 5 0.26
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (17 bp):
TATATAAAGTAAATAAG
Found at i:68027041 original size:19 final size:19
Alignment explanation
Indices: 68027011--68027050 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
68027001 GTGTAAATGG
*
68027011 ATAAACAATAAAGGCAAATA
1 ATAAACAATAAAAGC-AATA
68027031 ATAAA-AATAAAAGCAATA
1 ATAAACAATAAAAGCAATA
68027049 AT
1 AT
68027051 GACAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 8 0.42
20 5 0.26
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.17
Consensus pattern (19 bp):
ATAAACAATAAAAGCAATA
Found at i:68027057 original size:18 final size:19
Alignment explanation
Indices: 68027014--68027058 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
68027004 TAAATGGATA
*
68027014 AACAATAAAGGCAAATAAT
1 AACAATAAAAGCAAATAAT
*
68027033 AAAAATAAAAGC-AATAAT
1 AACAATAAAAGCAAATAAT
*
68027051 GACAATAA
1 AACAATAA
68027059 TAATAATGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.67, C:0.09, G:0.09, T:0.16
Consensus pattern (19 bp):
AACAATAAAAGCAAATAAT
Found at i:68028852 original size:21 final size:20
Alignment explanation
Indices: 68028828--68028872 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
68028818 TTTACCCTCC
68028828 CTGTTTTACCCTCTGCCTCTT
1 CTGTTTTACCCT-TGCCTCTT
*
68028849 CTG--TTCCCCTTGCCTCTT
1 CTGTTTTACCCTTGCCTCTT
68028867 CTGTTT
1 CTGTTT
68028873 CGCCCGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 11 0.52
19 6 0.29
20 1 0.05
21 3 0.14
ACGTcount: A:0.02, C:0.38, G:0.11, T:0.49
Consensus pattern (20 bp):
CTGTTTTACCCTTGCCTCTT
Found at i:68028864 original size:18 final size:19
Alignment explanation
Indices: 68028836--68028871 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
68028826 CCCTGTTTTA
68028836 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
68028855 CCCT-TGCCTCTTCTGTT
1 CCCTCTGCCTCTTCTGTT
68028872 TCGCCCGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.00, C:0.44, G:0.11, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTCTGTTC
Found at i:68028945 original size:33 final size:33
Alignment explanation
Indices: 68028908--68028975 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
68028898 TTTCTTTTCT
* *
68028908 TTTCTGCTGATTTGCTCCCTTTGTTTCTCACAG
1 TTTCTGCCGATTTGCTCCCTCTGTTTCTCACAG
*
68028941 TTTCTGCCGATTTGCTCCCTCTGTTTCTCATAG
1 TTTCTGCCGATTTGCTCCCTCTGTTTCTCACAG
68028974 TT
1 TT
68028976 CTCCACACGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.09, C:0.28, G:0.15, T:0.49
Consensus pattern (33 bp):
TTTCTGCCGATTTGCTCCCTCTGTTTCTCACAG
Found at i:68031605 original size:17 final size:16
Alignment explanation
Indices: 68031578--68031620 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
68031568 ATATAAGAAC
*
68031578 ATTTTATTATTAAATT
1 ATTTTAATATTAAATT
68031594 ATATTTAATATT-AATT
1 AT-TTTAATATTAAATT
68031610 ATTTTAA-ATTA
1 ATTTTAATATTA
68031621 TATAAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 3 0.12
15 5 0.21
16 8 0.33
17 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTAATATTAAATT
Found at i:68031700 original size:91 final size:91
Alignment explanation
Indices: 68031583--68031829 Score: 458
Period size: 91 Copynumber: 2.7 Consensus size: 91
68031573 AGAACATTTT
*
68031583 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
68031648 TCAAGAATTTTATGAAATTATATATC
66 TCAAGAATTTTATGAAATTATATATC
68031674 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
* *
68031739 TCATGAATTTTATGAAATTATATATT
66 TCAAGAATTTTATGAAATTATATATC
*
68031765 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
68031830 GTTATAATAA
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 152 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
TCAAGAATTTTATGAAATTATATATC
Found at i:68031796 original size:47 final size:46
Alignment explanation
Indices: 68031583--68031804 Score: 157
Period size: 47 Copynumber: 4.9 Consensus size: 46
68031573 AGAACATTTT
*
68031583 ATTATTAAATTATATTTAATATTAATTA-TTT-TAAATTATATA-A
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
* * ** *
68031626 ATTCATATAAGA--AAATTT-ATTATCAAGAATTTTATGAAATTATATATC
1 ATT-AT-TAA-ATTATATTTAATAAT-AATTATTTTAT-AAATTATATATA
68031674 ATTATTAAATTATATTTAATAATAATTA-TTT-TAAATTATATA-A
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
* * * * *
68031717 ATTCATATAAGA--AAATTT-ATTATCATGAATTTTATGAAATTATATATT
1 ATT-AT-TAA-ATTATATTTAATAATAAT-TATTTTAT-AAATTATATATA
68031765 ATTATTAAATTATATTTAATAATAATTA-TTT-TAAATTATA
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATA
68031805 CAAATTCATA
Statistics
Matches: 137, Mismatches: 20, Indels: 43
0.69 0.10 0.22
Matches are distributed among these distances:
43 15 0.11
44 36 0.26
45 16 0.12
46 16 0.12
47 38 0.28
48 16 0.12
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (46 bp):
ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
Found at i:68031910 original size:59 final size:61
Alignment explanation
Indices: 68031845--68032014 Score: 152
Period size: 59 Copynumber: 2.8 Consensus size: 61
68031835 AATAAATTTA
*
68031845 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA-AATT-A-
1 AATTTTATTAAATCATATATTTTAATTATAATATATTTAATA-TAATTATTTCATAATTAAG
* * * * * * * ** * *
68031904 TATTTTA-TAGTATCATATATTATAATTTTAGTA-AATTCATATAAGAATTTTGATTATTAAG
1 AATTTTATTA-AATCATATATTTTAATTATAATATATTTAATATAATTA-TTTCATAATTAAG
*
68031965 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
1 AATTTTATTAAATCATATATTTTAATTATAATATATTTAAT-ATAATTAT
68032015 GTTTAAATAT
Statistics
Matches: 81, Mismatches: 22, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
57 4 0.05
58 12 0.15
59 27 0.33
60 1 0.01
61 24 0.30
62 8 0.10
63 5 0.06
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (61 bp):
AATTTTATTAAATCATATATTTTAATTATAATATATTTAATATAATTATTTCATAATTAAG
Found at i:68031966 original size:16 final size:15
Alignment explanation
Indices: 68031945--68031974 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68031935 TAAATTCATA
68031945 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
68031961 TAAGAATTTTATTA
1 TAAGAATTTTATTA
68031975 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:68032000 original size:16 final size:16
Alignment explanation
Indices: 68031979--68032020 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
68031969 TTATTAAATT
*
68031979 ATATATTTTAATTATA
1 ATATATTTTAATAATA
68031995 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
68032010 AT-TATGTTTAA
1 ATATAT-TTTAA
68032021 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:68032005 original size:15 final size:15
Alignment explanation
Indices: 68031970--68032011 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
68031960 TTAAGAATTT
*
68031970 TATTAAATTAT-ATA
1 TATTTAATTATAATA
68031984 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
68031998 TATTTAATAATAAT
1 TATTTAATTATAAT
68032012 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:68032240 original size:40 final size:39
Alignment explanation
Indices: 68032145--68032245 Score: 134
Period size: 39 Copynumber: 2.6 Consensus size: 39
68032135 TTTTTCCATT
*
68032145 ATGCTATTACACCTCTATTCCATTCAAGCAAACACAAAA
1 ATGCTATTACGCCTCTATTCCATTCAAGCAAACACAAAA
*
68032184 ATGCTATTACGCCTCTATTCCATTCAA-CTAAACA-ATTAAT
1 ATGCTATTACGCCTCTATTCCATTCAAGC-AAACACA--AAA
*
68032224 TTGCTATTACGCCTCTATTCCA
1 ATGCTATTACGCCTCTATTCCA
68032246 ATACAACGAA
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
38 2 0.04
39 31 0.55
40 23 0.41
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.33
Consensus pattern (39 bp):
ATGCTATTACGCCTCTATTCCATTCAAGCAAACACAAAA
Found at i:68032753 original size:24 final size:23
Alignment explanation
Indices: 68032716--68032765 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
68032706 AATTTAAGAT
*
68032716 AAAATTTGAAATATGAAAAATAA
1 AAAATTTAAAATATGAAAAATAA
*
68032739 AAAATATTAAAATATTAAAAATAA
1 AAAAT-TTAAAATATGAAAAATAA
68032763 AAA
1 AAA
68032766 TACAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (23 bp):
AAAATTTAAAATATGAAAAATAA
Found at i:68032780 original size:23 final size:24
Alignment explanation
Indices: 68032724--68032774 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
68032714 ATAAAATTTG
* **
68032724 AAATATGAAAAATAAAAAATATTA
1 AAATATTAAAAATAAAAAATACAA
68032748 AAATATTAAAAAT-AAAAATACAA
1 AAATATTAAAAATAAAAAATACAA
68032771 AAAT
1 AAAT
68032775 TATAAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (24 bp):
AAATATTAAAAATAAAAAATACAA
Found at i:68033125 original size:11 final size:11
Alignment explanation
Indices: 68033111--68033153 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
68033101 AAATAACAAC
*
68033111 AAAACAATGAG
1 AAAACAATAAG
* *
68033122 AAAATAACAAG
1 AAAACAATAAG
*
68033133 AAAATAATAAG
1 AAAACAATAAG
68033144 AAAACAATAA
1 AAAACAATAA
68033154 TTTTCCTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.12
Consensus pattern (11 bp):
AAAACAATAAG
Found at i:68033126 original size:22 final size:22
Alignment explanation
Indices: 68033101--68033147 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
68033091 CATAATAATT
*
68033101 AAATAACAACAAAACAATGAGA
1 AAATAACAACAAAACAATAAGA
* *
68033123 AAATAACAAGAAAATAATAAGA
1 AAATAACAACAAAACAATAAGA
68033145 AAA
1 AAA
68033148 CAATAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.11
Consensus pattern (22 bp):
AAATAACAACAAAACAATAAGA
Found at i:68044119 original size:30 final size:31
Alignment explanation
Indices: 68044066--68044151 Score: 97
Period size: 30 Copynumber: 2.8 Consensus size: 31
68044056 AGAAAAAGCA
* *
68044066 GTTTAATT-AAAGTTTTAAAAAATTTTGAGG
1 GTTTAATTGAAACTTTTAAAAAATTTAGAGG
* *
68044096 GTTTGA-TGAGAA-TTTTTAAAAATTTAGAGG
1 GTTTAATTGA-AACTTTTAAAAAATTTAGAGG
*
68044126 GTTTAATTGAAACTTTTCAAAAATTT
1 GTTTAATTGAAACTTTTAAAAAATTT
68044152 GAAAGGTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.02
30 29 0.62
31 17 0.36
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.43
Consensus pattern (31 bp):
GTTTAATTGAAACTTTTAAAAAATTTAGAGG
Found at i:68049973 original size:16 final size:15
Alignment explanation
Indices: 68049932--68049977 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
68049922 AATAAAATTT
68049932 TATTTTTA-TTTA-A
1 TATTTTTATTTTATA
68049945 TATTTATTAATTTTATA
1 TATTT-TT-ATTTTATA
68049962 TACTTTTTATTTTATA
1 TA-TTTTTATTTTATA
68049978 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.18
14 2 0.07
15 1 0.04
16 12 0.43
17 5 0.18
18 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:68058552 original size:3 final size:3
Alignment explanation
Indices: 68058544--68058568 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
68058534 TCAGAAATTC
68058544 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
68058569 AATCAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:68059455 original size:37 final size:36
Alignment explanation
Indices: 68059395--68059464 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
68059385 AATATAATAA
*
68059395 TTTTATATTTTTTACAAATTTTATA-TTTATTTACAT
1 TTTTATATTTTTTACAAACTTTATAGTTT-TTTACAT
68059431 TTTTATAATTTTCTTAC-AACTTTATAGTTTTTTA
1 TTTTAT-ATTTT-TTACAAACTTTATAGTTTTTTA
68059465 TAATTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
36 6 0.20
37 17 0.57
38 7 0.23
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (36 bp):
TTTTATATTTTTTACAAACTTTATAGTTTTTTACAT
Found at i:68059466 original size:10 final size:9
Alignment explanation
Indices: 68059451--68059529 Score: 58
Period size: 10 Copynumber: 8.6 Consensus size: 9
68059441 TTCTTACAAC
68059451 TTTATAGTTT
1 TTTATA-TTT
68059461 TTTATAATTT
1 TTTAT-ATTT
68059471 TCTTATA-TT
1 T-TTATATTT
* *
68059480 TCTATATAT
1 TTTATATTT
68059489 TTTATAATTT
1 TTTAT-ATTT
68059499 TTCTA-ATTT
1 TT-TATATTT
68059508 TTTA-A-TT
1 TTTATATTT
68059515 TTTATAATTT
1 TTTAT-ATTT
68059525 TTTAT
1 TTTAT
68059530 TAAAATTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
7 6 0.11
8 7 0.12
9 15 0.26
10 22 0.39
11 7 0.12
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (9 bp):
TTTATATTT
Found at i:68059482 original size:38 final size:39
Alignment explanation
Indices: 68059397--68059482 Score: 88
Period size: 37 Copynumber: 2.3 Consensus size: 39
68059387 TATAATAATT
* * *
68059397 TTATATTTTTTACAAATTTTATATTTATTTACATTTTTA
1 TTATATTTCTTACAAACTTTATATTTATTTACAATTTTA
* * *
68059436 TAAT-TTTCTTAC-AACTTTATAGTTT-TTTATAATTTTC
1 TTATATTTCTTACAAACTTTATA-TTTATTTACAATTTTA
68059473 TTATATTTCT
1 TTATATTTCT
68059483 ATATATTTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
37 20 0.53
38 15 0.39
39 3 0.08
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (39 bp):
TTATATTTCTTACAAACTTTATATTTATTTACAATTTTA
Found at i:68059485 original size:29 final size:28
Alignment explanation
Indices: 68059430--68059499 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
68059420 TTTATTTACA
68059430 TTTTTATAATTTTCTTACAACTTTATAGT
1 TTTTTATAATTTTCTTACAACTTTATA-T
* *
68059459 TTTTTATAATTTTCTTA-TATTTCTATAT
1 TTTTTATAATTTTCTTACAACTT-TATAT
*
68059487 ATTTTATAATTTT
1 TTTTTATAATTTT
68059500 TCTAATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.43
29 21 0.57
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (28 bp):
TTTTTATAATTTTCTTACAACTTTATAT
Found at i:68059500 original size:9 final size:9
Alignment explanation
Indices: 68059391--68059581 Score: 96
Period size: 9 Copynumber: 21.0 Consensus size: 9
68059381 TTTTAATATA
68059391 ATAA-TTTT
1 ATAATTTTT
*
68059399 ATATTTTTT
1 ATAATTTTT
* *
68059408 ACAAATTTT
1 ATAATTTTT
68059417 AT-ATTTATT
1 ATAATTT-TT
68059426 -TACATTTTT
1 ATA-ATTTTT
68059435 ATAATTTTCT
1 ATAATTTT-T
**
68059445 -TACAACTTT
1 ATA-ATTTTT
*
68059454 ATAGTTTTTT
1 ATA-ATTTTT
68059464 ATAATTTTCT
1 ATAATTTT-T
*
68059474 -TATATTTCT
1 ATA-ATTTTT
68059483 AT-ATATTTT
1 ATAAT-TTTT
68059492 ATAATTTTT
1 ATAATTTTT
*
68059501 CTAATTTTT
1 ATAATTTTT
68059510 -TAATTTTT
1 ATAATTTTT
68059518 ATAATTTTTT
1 ATAA-TTTTT
*
68059528 ATTAAAATTTTA
1 A-T--AATTTTT
68059540 ATAA-TTTT
1 ATAATTTTT
*
68059548 ATAACTTTT
1 ATAATTTTT
*
68059557 ATTATTTTT
1 ATAATTTTT
68059566 AT--TTTTT
1 ATAATTTTT
*
68059573 ATCATTTTT
1 ATAATTTTT
68059582 GCCACATGTC
Statistics
Matches: 142, Mismatches: 20, Indels: 41
0.70 0.10 0.20
Matches are distributed among these distances:
7 7 0.05
8 24 0.17
9 70 0.49
10 32 0.23
11 2 0.01
12 5 0.04
13 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:68070451 original size:26 final size:25
Alignment explanation
Indices: 68070400--68070451 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
68070390 AAATTGATCA
**
68070400 ATTGTTAATTAATTATTTAATTATT
1 ATTGTTAATTAATTATTTAAGCATT
* *
68070425 ATTGTTTATTTAATTTTTTAAGCATT
1 ATTG-TTAATTAATTATTTAAGCATT
68070451 A
1 A
68070452 ATCTCATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.60
Consensus pattern (25 bp):
ATTGTTAATTAATTATTTAAGCATT
Found at i:68071173 original size:13 final size:13
Alignment explanation
Indices: 68071155--68071179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68071145 TAAATATGAA
68071155 AAATTGTGGGTAT
1 AAATTGTGGGTAT
68071168 AAATTGTGGGTA
1 AAATTGTGGGTA
68071180 GAAAAATCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (13 bp):
AAATTGTGGGTAT
Found at i:68073034 original size:21 final size:21
Alignment explanation
Indices: 68073010--68073049 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
68073000 ATAGAGGTGT
*
68073010 TACATTAAAAT-TTATATTTAA
1 TACAATAAAATATT-TATTTAA
68073031 TACAATAAAATATTTATTT
1 TACAATAAAATATTTATTT
68073050 GTATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
TACAATAAAATATTTATTTAA
Found at i:68073554 original size:16 final size:16
Alignment explanation
Indices: 68073533--68073566 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68073523 GAGTAAACGT
68073533 GGAAGAAAG-GAAGAAG
1 GGAAGAAAGTG-AGAAG
68073549 GGAAGAAAGTGAGAAG
1 GGAAGAAAGTGAGAAG
68073565 GG
1 GG
68073567 GCAAAGGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03
Consensus pattern (16 bp):
GGAAGAAAGTGAGAAG
Found at i:68082101 original size:3 final size:3
Alignment explanation
Indices: 68082093--68082119 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
68082083 AGAAATCCTT
68082093 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
68082120 ATCTATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:68083398 original size:220 final size:220
Alignment explanation
Indices: 68082957--68083400 Score: 789
Period size: 221 Copynumber: 2.0 Consensus size: 220
68082947 GACTTACAAG
68082957 AATCCTCCATGCTTTTTGGTTTCTCTATAAGCTTTAGAAGCCAATTTTACCCTTCAATTGTATCA
1 AATCCTCCATGCTTTTTGGTTTCTCTATAAGCTTTAGAAGCCAATTTTACCCTTCAATTGTATCA
*
68083022 TTTTCGTGGGAGGTTTTGAACTTCTATAAAATAGCTCTCGGGCAATTATTTGGAACCTTTTGGTG
66 TTTTCGTGGGAGGTTTTGAACTTCTATAAAATAGCTCTCGGGCAATTATTTGGAACCTCTTGGTG
* *
68083087 GTTGTTACACCCACGATGTGGGTGAAAGAAAATATTTTATATACTTTTTAAAAAGAAATTAATGA
131 GTTGTTACACCCACGACGTGGATGAAAGAAAATATTTTATATACTTTTTAAAAAGAAATTAATGA
68083152 TGATCAATGGTGGAGTGGTAAAAAA
196 TGATCAATGGTGGAGTGGTAAAAAA
*
68083177 AATCCTCCATGCTTTTTGGTTTCTCTATAAGCTTTAGAAGCCAATTTTACCCTTCCATTGTATCA
1 AATCCTCCATGCTTTTTGGTTTCTCTATAAGCTTTAGAAGCCAATTTTACCCTTCAATTGTATCA
* *
68083242 TTTTGCGTGGGAGGTTTTGAACTTCTATAGAATAGCTCTCGGGCAATTCTTTGGAACCTCTTGGT
66 TTTT-CGTGGGAGGTTTTGAACTTCTATAAAATAGCTCTCGGGCAATTATTTGGAACCTCTTGGT
* ** *
68083307 GGTTGTTACACCTATTACGTGGATGAAAGAAAATATTTTATATACTTTTTAAAATGAAATTAATG
130 GGTTGTTACACCCACGACGTGGATGAAAGAAAATATTTTATATACTTTTTAAAAAGAAATTAATG
68083372 ATGATCAATGGTGGAGTGGTAAAAAA
195 ATGATCAATGGTGGAGTGGTAAAAAA
68083398 AAT
1 AAT
68083401 TGTGCTTAAA
Statistics
Matches: 213, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
220 68 0.32
221 145 0.68
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (220 bp):
AATCCTCCATGCTTTTTGGTTTCTCTATAAGCTTTAGAAGCCAATTTTACCCTTCAATTGTATCA
TTTTCGTGGGAGGTTTTGAACTTCTATAAAATAGCTCTCGGGCAATTATTTGGAACCTCTTGGTG
GTTGTTACACCCACGACGTGGATGAAAGAAAATATTTTATATACTTTTTAAAAAGAAATTAATGA
TGATCAATGGTGGAGTGGTAAAAAA
Found at i:68083529 original size:6 final size:6
Alignment explanation
Indices: 68083518--68083567 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
68083508 CAAAAGTTTT
68083518 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG
68083566 AT
1 AT
68083568 GCAAATTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
ATATAG
Found at i:68083929 original size:20 final size:20
Alignment explanation
Indices: 68083890--68083929 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68083880 CCGTAAAATG
**
68083890 ATTTCTGGAAAATGTTTTAC
1 ATTTCTGGAAAATGACTTAC
*
68083910 ATTTCTGTAAAATGACTTAC
1 ATTTCTGGAAAATGACTTAC
68083930 TGGAAAATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
ATTTCTGGAAAATGACTTAC
Found at i:68083937 original size:35 final size:34
Alignment explanation
Indices: 68083877--68083942 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 34
68083867 AGTAAAATAT
*
68083877 TTTCCGTAAAATGATTTCTGGAAAATGTTTTACA
1 TTTCCGTAAAATGATTACTGGAAAATGTTTTACA
*
68083911 TTTCTGTAAAATGACTTACTGGAAAATGTTTT
1 TTTCCGTAAAATGA-TTACTGGAAAATGTTTT
68083943 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (34 bp):
TTTCCGTAAAATGATTACTGGAAAATGTTTTACA
Found at i:68085132 original size:18 final size:18
Alignment explanation
Indices: 68085080--68085124 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
68085070 GCTTCGAAAC
68085080 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGGAAGGAGAAG
68085098 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGGAAGGAGAAG
68085116 GGGAAAGGG
1 GGGAAAGGG
68085125 GAGAAGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (18 bp):
GGGAAAGGGAAGGAGAAG
Found at i:68086076 original size:21 final size:19
Alignment explanation
Indices: 68086033--68086080 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
68086023 TATTTAAAGG
* *
68086033 ATTTAAAATAAATATAAAT
1 ATTTAAAATAAAAATAAAA
68086052 ATTTAAAACTAAACAATAAAA
1 ATTTAAAA-TAAA-AATAAAA
68086073 ATTTAAAA
1 ATTTAAAA
68086081 GTTGAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 4 0.16
21 13 0.52
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (19 bp):
ATTTAAAATAAAAATAAAA
Found at i:68093604 original size:45 final size:45
Alignment explanation
Indices: 68093534--68093970 Score: 367
Period size: 52 Copynumber: 9.6 Consensus size: 45
68093524 TTTGAGTACT
* * **
68093534 TCTGATCAAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
68093579 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
68093631 TCTGATCAAGTGATAAAGTGATAAGT-ATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
68093676 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTT-AGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTTCGGCTACACTTA
68093721 TCTGATCAAGTGACAAGTGGA-AAGTGATAAGTATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAAGT-GATAA--G-T--G-ATAGCTTCGGCTACACTTA
68093772 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTTCGGCTACACTTA
**
68093818 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTTCGGCTACACTTA
*
68093870 TCTGATCAA--GA-AA--CA-AAGTGATAAG--T-GGCTACACTTA
1 TCTGATCAAGTGACAAGTGATAAGTGAT-AGCTTCGGCTACACTTA
* *
68093907 TCTGATCAA--GA-AA--CA-AAGTGATAG-GT-GGCTACACTTA
1 TCTGATCAAGTGACAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
68093944 TCTGATC-AGGGACAAGTGATAAGTGAT
1 TCTGATCAAGTGACAAGTGATAAGTGAT
68093971 CATACGTAAG
Statistics
Matches: 342, Mismatches: 16, Indels: 71
0.80 0.04 0.17
Matches are distributed among these distances:
36 3 0.01
37 51 0.15
38 3 0.01
39 9 0.03
40 3 0.01
41 1 0.00
42 9 0.03
44 6 0.02
45 81 0.24
46 52 0.15
47 2 0.01
49 2 0.01
50 10 0.03
51 26 0.08
52 84 0.25
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:68093618 original size:52 final size:51
Alignment explanation
Indices: 68093540--68093879 Score: 437
Period size: 52 Copynumber: 6.9 Consensus size: 51
68093530 TACTTCTGAT
* **
68093540 CAAGTGAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
1 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
68093592 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG-
1 CAAGT-GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
68093643 --A-T-AAAGTGATAAGT-ATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
68093689 C-----AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
68093734 CAAGTGGAAAGTGATAAGT-ATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGT-GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
68093785 C-----AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
**
68093831 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
1 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAG
68093880 AAACAAAGTG
Statistics
Matches: 260, Mismatches: 10, Indels: 36
0.85 0.03 0.12
Matches are distributed among these distances:
45 78 0.30
46 52 0.20
48 1 0.00
49 1 0.00
50 7 0.03
51 36 0.14
52 84 0.32
53 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (51 bp):
CAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:68093649 original size:46 final size:46
Alignment explanation
Indices: 68093599--68093896 Score: 386
Period size: 45 Copynumber: 6.3 Consensus size: 46
68093589 TGACAAGTGG
* * *
68093599 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAT
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
*
68093645 AAAGTGATAAGT-ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
*
68093690 AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
68093735 AAGTGGAAAGTGATAAGT-ATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
68093786 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
** **
68093832 AAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAAAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
68093884 AAAGTGATAAGTG
1 AAAGTGATAAGTG
68093897 GCTACACTTA
Statistics
Matches: 229, Mismatches: 8, Indels: 30
0.86 0.03 0.11
Matches are distributed among these distances:
45 79 0.34
46 65 0.28
50 7 0.03
51 36 0.16
52 42 0.18
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:68093803 original size:142 final size:143
Alignment explanation
Indices: 68093534--68093879 Score: 572
Period size: 142 Copynumber: 2.4 Consensus size: 143
68093524 TTTGAGTACT
*
68093534 TCTGATCAAGTGA-AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
68093598 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTATAGCT
66 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTATAGCT
*
68093663 TCGGCTATACTTA
131 TCGGCTACACTTA
68093676 TCTGATCAAGTGACAAAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
68093740 GAAAGTGATAAGT-ATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-ATAGC
68093804 TTCGGCTACACTTA
130 TTCGGCTACACTTA
68093818 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
68093880 AAACAAAGTG
Statistics
Matches: 191, Mismatches: 4, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
141 43 0.23
142 90 0.47
143 17 0.09
148 18 0.09
149 23 0.12
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (143 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTATAGCT
TCGGCTACACTTA
Found at i:68093904 original size:37 final size:37
Alignment explanation
Indices: 68093860--68093968 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
68093850 GATAGCTTTA
68093860 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
68093897 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
68093934 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
68093969 ATCATACGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 53 0.78
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:68095282 original size:49 final size:49
Alignment explanation
Indices: 68095223--68095415 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
68095213 CATGTGACAT
68095223 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
68095273 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
68095322 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
68095371 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
68095416 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:68098614 original size:46 final size:45
Alignment explanation
Indices: 68098589--68098844 Score: 298
Period size: 46 Copynumber: 5.4 Consensus size: 45
68098579 GATCAAGTGA
* * *
68098589 CAAGTGGA-AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
* * *
68098634 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
68098680 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
* *
68098726 CAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
* *
68098778 CAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
*
68098824 CAAGAGACAAAGTGATAAGTG
1 CAAGTGAC-AAGTGATAAGTG
68098845 GCTACACTTA
Statistics
Matches: 192, Mismatches: 10, Indels: 17
0.88 0.05 0.08
Matches are distributed among these distances:
44 2 0.01
45 5 0.03
46 142 0.74
52 43 0.22
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (45 bp):
CAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGAT
Found at i:68098650 original size:98 final size:92
Alignment explanation
Indices: 68098596--68098844 Score: 381
Period size: 98 Copynumber: 2.6 Consensus size: 92
68098586 TGACAAGTGG
* * *
68098596 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
68098661 TCGGCTATACTTATCTGATCAAGTGAC
66 TCGGCTATACTTATCTGATCAAGTGAC
68098688 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTG---A-T--AAAGTGATAAGTG
*
68098753 ATAGCTTCGGCTATACTTATCTGATCAAGAGAC
60 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
* * *
68098786 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTG
68098845 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
92 54 0.38
95 2 0.01
96 1 0.01
98 87 0.60
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (92 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCT
TCGGCTATACTTATCTGATCAAGTGAC
Found at i:68098790 original size:144 final size:144
Alignment explanation
Indices: 68098530--68098844 Score: 531
Period size: 144 Copynumber: 2.2 Consensus size: 144
68098520 TTTGAGTACT
* * *
68098530 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
68098595 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
* *
68098660 TTCGGCTATACTTA
131 TTCAGCTACACTTA
68098674 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
68098739 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
*
68098804 TTTAGCTACACTTA
131 TTCAGCTACACTTA
*
68098818 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
68098845 GCTACACTTA
Statistics
Matches: 160, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
144 160 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
TTCAGCTACACTTA
Found at i:68098852 original size:37 final size:37
Alignment explanation
Indices: 68098808--68098953 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
68098798 GATAGCTTTA
*
68098808 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
68098845 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
68098882 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
68098919 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
68098954 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:68101788 original size:18 final size:17
Alignment explanation
Indices: 68101755--68101793 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
68101745 TTGTATAAAT
68101755 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
68101773 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
68101790 TGTG
1 TGTG
68101794 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:68102046 original size:23 final size:23
Alignment explanation
Indices: 68102019--68102116 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
68102009 AGTGTTATTG
68102019 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
68102042 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
68102065 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
68102087 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
68102110 ATCAGTG
1 ATCAGTG
68102117 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:68102085 original size:45 final size:45
Alignment explanation
Indices: 68102021--68102109 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
68102011 TGTTATTGAT
* *
68102021 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
68102066 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
68102110 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:68121375 original size:22 final size:22
Alignment explanation
Indices: 68121342--68121397 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
68121332 ATAAATTATT
68121342 TTTACTATTTTAAAT-ATAAAATA
1 TTTA-TATTTTAAATGAT-AAATA
*
68121365 TTTATATTTTACATGATAAATA
1 TTTATATTTTAAATGATAAATA
*
68121387 ATTATAATTTT
1 TTTAT-ATTTT
68121398 TTAATTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTATATTTTAAATGATAAATA
Found at i:68124942 original size:21 final size:21
Alignment explanation
Indices: 68124912--68124957 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
68124902 ATATTAAATT
68124912 TTTTTAAATATAATATAATAAA
1 TTTTTAAATATAATA-AATAAA
* *
68124934 TTTTT-AATATTATAAATATA
1 TTTTTAAATATAATAAATAAA
68124954 TTTT
1 TTTT
68124958 ATGCTTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 8 0.36
22 5 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTTTAAATATAATAAATAAA
Found at i:68125128 original size:12 final size:12
Alignment explanation
Indices: 68125111--68125136 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68125101 TTATTTTTTT
68125111 ATTTTAGAAATA
1 ATTTTAGAAATA
68125123 ATTTTAGAAATA
1 ATTTTAGAAATA
68125135 AT
1 AT
68125137 AGATATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
ATTTTAGAAATA
Found at i:68126388 original size:21 final size:20
Alignment explanation
Indices: 68126362--68126406 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
68126352 TTTTATAAGC
68126362 TTATATGAATTTTAATATTTT
1 TTATATGAATTTT-ATATTTT
***
68126383 TTATATTTCTTTTATATTTT
1 TTATATGAATTTTATATTTT
68126403 TTAT
1 TTAT
68126407 GATTTTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTATATGAATTTTATATTTT
Found at i:68126401 original size:20 final size:22
Alignment explanation
Indices: 68126371--68126411 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
68126361 CTTATATGAA
68126371 TTTTAATATTTTTTAT-ATTTC
1 TTTTAATATTTTTTATGATTTC
68126392 TTTT-ATATTTTTTATGATTT
1 TTTTAATATTTTTTATGATTT
68126412 TTAAGATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTAATATTTTTTATGATTTC
Found at i:68126404 original size:9 final size:9
Alignment explanation
Indices: 68126371--68126413 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
68126361 CTTATATGAA
*
68126371 TTTTAATAT
1 TTTTTATAT
68126380 TTTTTATATT
1 TTTTTATA-T
68126390 TCTTTTATAT
1 T-TTTTATAT
68126400 TTTTTATGAT
1 TTTTTAT-AT
68126410 TTTT
1 TTTT
68126414 AAGATTTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 13 0.43
10 10 0.33
11 7 0.23
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTTTATAT
Found at i:68126574 original size:20 final size:19
Alignment explanation
Indices: 68126530--68126597 Score: 70
Period size: 18 Copynumber: 3.6 Consensus size: 19
68126520 TATGTCAATC
* *
68126530 TTAATTCTTTT-AATATTT
1 TTAATTTTTTTAAATTTTT
*
68126548 ATAATTTTTTTACAATTTTT
1 TTAATTTTTTTA-AATTTTT
68126568 TTAA--TTTTTAAATTTTT
1 TTAATTTTTTTAAATTTTT
68126585 TTAATTATTTTTA
1 TTAATT-TTTTTA
68126598 TTGGAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 11 0.27
18 15 0.37
20 15 0.37
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTAATTTTTTTAAATTTTT
Found at i:68126575 original size:17 final size:17
Alignment explanation
Indices: 68126554--68126590 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 17
68126544 ATTTATAATT
68126554 TTTTTACAATTTTTTTAA
1 TTTTTA-AATTTTTTTAA
68126572 TTTTTAAATTTTTTTAA
1 TTTTTAAATTTTTTTAA
68126589 TT
1 TT
68126591 ATTTTTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTAAATTTTTTTAA
Found at i:68126596 original size:29 final size:29
Alignment explanation
Indices: 68126532--68126587 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
68126522 TGTCAATCTT
*
68126532 AATTCTTTTAATATTTATAATTTTTTTAC
1 AATTTTTTTAATATTTATAATTTTTTTAC
*
68126561 AATTTTTTTAATTTTTA-AATTTTTTTA
1 AATTTTTTTAATATTTATAATTTTTTTA
68126588 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (29 bp):
AATTTTTTTAATATTTATAATTTTTTTAC
Found at i:68136745 original size:15 final size:16
Alignment explanation
Indices: 68136720--68136749 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
68136710 AGAAAAATTG
68136720 AAAATCGAATCAAATC
1 AAAATCGAATCAAATC
68136736 AAAA-CGAATCAAAT
1 AAAATCGAATCAAAT
68136750 TATTATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.17, G:0.07, T:0.17
Consensus pattern (16 bp):
AAAATCGAATCAAATC
Found at i:68148337 original size:13 final size:13
Alignment explanation
Indices: 68148319--68148343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68148309 CAACATTAAT
68148319 TTTTATTTATTTC
1 TTTTATTTATTTC
68148332 TTTTATTTATTT
1 TTTTATTTATTT
68148344 ATTTATGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTATTTC
Found at i:68150400 original size:80 final size:80
Alignment explanation
Indices: 68150268--68150771 Score: 834
Period size: 80 Copynumber: 6.3 Consensus size: 80
68150258 TAATCTTTTT
* * *
68150268 ACTCTATCAAGTAAAATCTAAATATCATACACACCTCCCTCCACCGCCAACACTTAACACCAATT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATT
*
68150333 CTAAAACTCCTTAAT
66 CTAAAACTCCTTAAC
*
68150348 ACTCTATCAAGTAAAACCTAAATATCATACAC-CTCTCTCTCCGCTGCCAACACTTAACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACAC-CTCTCTCCGCCGCCAACACTTAACACCAAT
* *
68150412 CCTAAAACTCTTTAAC
65 TCTAAAACTCCTTAAC
* *
68150428 ACTCTATCTAGTAAAACCTAAATATCATACACACCTCCCTCCGCCGCCAACACTTAACACCAATT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATT
68150493 CTAAAACTCCTTAAC
66 CTAAAACTCCTTAAC
*
68150508 ACTCTATCAAGTAAAACCTAAATATCATACACATCTCTCTCCGCCGCCAACACTTAACACCAATT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATT
*
68150573 CTAAAACTCCTTAAT
66 CTAAAACTCCTTAAC
*
68150588 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATC
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATT
*
68150653 CTAAAACTCTTTAAC
66 CTAAAACTCCTTAAC
*
68150668 ACTCTATCTAGTAAAACCTAAATATCATACACACCT-TCCTCCGCCGCCAACACTT-ACACCAAT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCT-CTCCGCCGCCAACACTTAACACCAAT
*
68150731 ACTAAAACTCCTTAAC
65 TCTAAAACTCCTTAAC
68150747 ACTCTATCAAGTAAAACCTAAATAT
1 ACTCTATCAAGTAAAACCTAAATAT
68150772 TCCTTGATAC
Statistics
Matches: 397, Mismatches: 24, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
79 48 0.12
80 348 0.88
81 1 0.00
ACGTcount: A:0.38, C:0.34, G:0.04, T:0.25
Consensus pattern (80 bp):
ACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAACACCAATT
CTAAAACTCCTTAAC
Found at i:68150691 original size:240 final size:239
Alignment explanation
Indices: 68150268--68150771 Score: 920
Period size: 240 Copynumber: 2.1 Consensus size: 239
68150258 TAATCTTTTT
*
68150268 ACTCTATCAAGTAAAATCTAAATATCATACACACCTCCCTCCACCGCCAACACTTAACACCAATT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCCCTCCACCGCCAACACTTAACACCAATT
*
68150333 CTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACACCTCTCTCTCCGCTGCCAA
66 CTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACACCTCTCTCTCCGCCGCCAA
68150398 CACTTAACACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACACC
131 CACTTAACACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACACC
*
68150463 TCCCTCCGCCGCCAACACTTAACACCAATTCTAAAACTCCTTAAC
196 TCCCTCCGCCGCCAACACTT-ACACCAATACTAAAACTCCTTAAC
* * *
68150508 ACTCTATCAAGTAAAACCTAAATATCATACACATCTCTCTCCGCCGCCAACACTTAACACCAATT
1 ACTCTATCAAGTAAAACCTAAATATCATACACACCTCCCTCCACCGCCAACACTTAACACCAATT
68150573 CTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACACAC-CTCTCTCCGCCGCCA
66 CTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACAC-CTCTCTCTCCGCCGCCA
68150637 ACACTTAACACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACAC
130 ACACTTAACACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACAC
*
68150702 CTTCCTCCGCCGCCAACACTTACACCAATACTAAAACTCCTTAAC
195 CTCCCTCCGCCGCCAACACTTACACCAATACTAAAACTCCTTAAC
68150747 ACTCTATCAAGTAAAACCTAAATAT
1 ACTCTATCAAGTAAAACCTAAATAT
68150772 TCCTTGATAC
Statistics
Matches: 256, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
239 48 0.19
240 207 0.81
241 1 0.00
ACGTcount: A:0.38, C:0.34, G:0.04, T:0.25
Consensus pattern (239 bp):
ACTCTATCAAGTAAAACCTAAATATCATACACACCTCCCTCCACCGCCAACACTTAACACCAATT
CTAAAACTCCTTAATACTCTATCAAGTAAAACCTAAATATCATACACCTCTCTCTCCGCCGCCAA
CACTTAACACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACACC
TCCCTCCGCCGCCAACACTTACACCAATACTAAAACTCCTTAAC
Found at i:68150776 original size:33 final size:33
Alignment explanation
Indices: 68150739--68150801 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
68150729 ATACTAAAAC
68150739 TCCTTAACACTCTATCAAGTAAAACCTAAATAT
1 TCCTTAACACTCTATCAAGTAAAACCTAAATAT
* * *
68150772 TCCTTGATACTCTATTAAGTAAAACCTAAA
1 TCCTTAACACTCTATCAAGTAAAACCTAAA
68150802 GATCATTCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (33 bp):
TCCTTAACACTCTATCAAGTAAAACCTAAATAT
Found at i:68150799 original size:112 final size:113
Alignment explanation
Indices: 68150668--68150884 Score: 303
Period size: 112 Copynumber: 1.9 Consensus size: 113
68150658 ACTCTTTAAC
* * * * *
68150668 ACTCTATCTAGTAAAACCTAAATATCATACACACCTTCCTCCGCCGCCAACACTT-ACACCAATA
1 ACTCTATCTAGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAAAAACAATA
68150732 CTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATTCCTTGAT
66 CTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATTCCTTGAT
* *
68150780 ACTCTAT-TAAGTAAAACCTAAAGATCATTCACACCTCCCTCAGCCGTCAACACTTAAAAACAAT
1 ACTCTATCT-AGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAAAAACAAT
* * * * *
68150844 CCTAAAACTCCTTAATACTTTATCGAGTGAAACCTAAATAT
65 ACTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATAT
68150885 CATGCGAACC
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
111 1 0.01
112 48 0.53
113 42 0.46
ACGTcount: A:0.39, C:0.29, G:0.06, T:0.27
Consensus pattern (113 bp):
ACTCTATCTAGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAAAAACAATA
CTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATATTCCTTGAT
Found at i:68150881 original size:80 final size:80
Alignment explanation
Indices: 68150793--68150940 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
68150783 CTATTAAGTA
* *
68150793 AAACCTAAAGATCATTC-ACACCTCCCTCAGCCGTCAACACTTAAAAACAATCCTAAAACTCCTT
1 AAACCTAAAGATCATGCGA-ACCTCCCTCAGCCGCCAACACTTAAAAACAATCCTAAAACTCCTT
68150857 AATACTTTATCGAGTG
65 AATACTTTATCGAGTG
* ** * * * *
68150873 AAACCTAAATATCATGCGAACCTTTCTCCGCCGCCAACACTTAACACCAATCCTCAAACTCCTTA
1 AAACCTAAAGATCATGCGAACCTCCCTCAGCCGCCAACACTTAAAAACAATCCTAAAACTCCTTA
68150938 ATA
66 ATA
68150941 ACATTAAGAC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 57 0.98
81 1 0.02
ACGTcount: A:0.36, C:0.32, G:0.07, T:0.24
Consensus pattern (80 bp):
AAACCTAAAGATCATGCGAACCTCCCTCAGCCGCCAACACTTAAAAACAATCCTAAAACTCCTTA
ATACTTTATCGAGTG
Found at i:68150913 original size:192 final size:193
Alignment explanation
Indices: 68150580--68150938 Score: 533
Period size: 192 Copynumber: 1.9 Consensus size: 193
68150570 ATTCTAAAAC
* * *
68150580 TCCTTAATACTCTATCAAGTAAAACCTAAATATCATACACACCTCTCTCCGCCGCCAACACTTAA
1 TCCTTAATACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAA
* * * *
68150645 CACCAATCCTAAAACTCTTTAACACTCTATCTAGTAAAACCTAAATATCATACACACCTTCCTCC
66 AAACAATCCTAAAACTCCTTAACACTCTATCGAGTAAAACCTAAATATCATACACACCTTCCTCC
68150710 GCCGCCAACACTT-ACACCAATACTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATAT
131 GCCGCCAACACTTAACACCAATACTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATAT
* * * *
68150772 TCCTTGATACTCTATTAAGTAAAACCTAAAGATCATTCACACCTCCCTCAGCCGTCAACACTTAA
1 TCCTTAATACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAA
* * * * *
68150837 AAACAATCCTAAAACTCCTTAATACTTTATCGAGTGAAACCTAAATATCATGCGA-ACCTTTCTC
66 AAACAATCCTAAAACTCCTTAACACTCTATCGAGTAAAACCTAAATATCATAC-ACACCTTCCTC
* *
68150901 CGCCGCCAACACTTAACACCAATCCTCAAACTCCTTAA
130 CGCCGCCAACACTTAACACCAATACTAAAACTCCTTAA
68150939 TAACATTAAG
Statistics
Matches: 147, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
192 125 0.85
193 22 0.15
ACGTcount: A:0.37, C:0.32, G:0.05, T:0.26
Consensus pattern (193 bp):
TCCTTAATACTCTATCAAGTAAAACCTAAAGATCATACACACCTCCCTCAGCCGCCAACACTTAA
AAACAATCCTAAAACTCCTTAACACTCTATCGAGTAAAACCTAAATATCATACACACCTTCCTCC
GCCGCCAACACTTAACACCAATACTAAAACTCCTTAACACTCTATCAAGTAAAACCTAAATAT
Found at i:68154285 original size:18 final size:19
Alignment explanation
Indices: 68154249--68154286 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
68154239 CCTCACGTAA
68154249 TTAAACTCTCCTAAGACTT
1 TTAAACTCTCCTAAGACTT
*
68154268 TTAAACTCT-CTTAGACTT
1 TTAAACTCTCCTAAGACTT
68154286 T
1 T
68154287 ACCGAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAACTCTCCTAAGACTT
Found at i:68166002 original size:142 final size:142
Alignment explanation
Indices: 68165746--68166030 Score: 543
Period size: 142 Copynumber: 2.0 Consensus size: 142
68165736 CAGCAATGAA
*
68165746 TGTCCACTGAAATAGCTTGAAGCTAAAGTTTGGTTCCTTAAAAGGGTAAACTGTTGAAATTGCAG
1 TGTCCACTGAAATAGCTTGAAGCTAAAGTTTGGATCCTTAAAAGGGTAAACTGTTGAAATTGCAG
*
68165811 TCAATGCACTTGCCCTGCTTTAGTACAACAGGGTTCTATAGAGAGAAAAATGCTCTTAACCGCAC
66 TCAATGCACCTGCCCTGCTTTAGTACAACAGGGTTCTATAGAGAGAAAAATGCTCTTAACCGCAC
68165876 TCAAATTCACGT
131 TCAAATTCACGT
*
68165888 TGTCCGCTGAAATAGCTTGAAGCTAAAGTTTGGATCCTTAAAAGGGTAAACTGTTGAAATTGCAG
1 TGTCCACTGAAATAGCTTGAAGCTAAAGTTTGGATCCTTAAAAGGGTAAACTGTTGAAATTGCAG
68165953 TCAATGCACCTGCCCTGCTTTAGTACAACAGGGTTCTATAGAGAGAAAAATGCTCTTAACCGCAC
66 TCAATGCACCTGCCCTGCTTTAGTACAACAGGGTTCTATAGAGAGAAAAATGCTCTTAACCGCAC
68166018 TCAAATTCACGT
131 TCAAATTCACGT
68166030 T
1 T
68166031 CTCAAGCTCG
Statistics
Matches: 140, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
142 140 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (142 bp):
TGTCCACTGAAATAGCTTGAAGCTAAAGTTTGGATCCTTAAAAGGGTAAACTGTTGAAATTGCAG
TCAATGCACCTGCCCTGCTTTAGTACAACAGGGTTCTATAGAGAGAAAAATGCTCTTAACCGCAC
TCAAATTCACGT
Found at i:68181505 original size:14 final size:12
Alignment explanation
Indices: 68181462--68181500 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
68181452 AATGAAACAT
* *
68181462 ACATACATATAT
1 ACATACAGATAC
68181474 ACATACAGATAC
1 ACATACAGATAC
68181486 ACATACAGATAC
1 ACATACAGATAC
68181498 ACA
1 ACA
68181501 CATACTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.23, G:0.05, T:0.21
Consensus pattern (12 bp):
ACATACAGATAC
Found at i:68203439 original size:18 final size:18
Alignment explanation
Indices: 68203416--68203451 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68203406 AGGAGGAACC
68203416 GGCTCTTCCTACAAATTA
1 GGCTCTTCCTACAAATTA
68203434 GGCTCTTCCTACAAATTA
1 GGCTCTTCCTACAAATTA
68203452 TCCTCTGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (18 bp):
GGCTCTTCCTACAAATTA
Found at i:68203457 original size:18 final size:18
Alignment explanation
Indices: 68203418--68203457 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
68203408 GAGGAACCGG
*
68203418 CTCTTCCTACAAATTAGG
1 CTCTTCCTACAAATTAGC
*
68203436 CTCTTCCTACAAATTATC
1 CTCTTCCTACAAATTAGC
68203454 CTCT
1 CTCT
68203458 GCCAGCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.25, C:0.33, G:0.05, T:0.38
Consensus pattern (18 bp):
CTCTTCCTACAAATTAGC
Found at i:68209627 original size:63 final size:63
Alignment explanation
Indices: 68209550--68209676 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
68209540 TTAATGGATA
68209550 TTTAGAACTGCTCGAGCTCGAGTTCAGTTTAATAATTATCAAATTAAATTCGAATAATTTACG
1 TTTAGAACTGCTCGAGCTCGAGTTCAGTTTAATAATTATCAAATTAAATTCGAATAATTTACG
68209613 TTTAGAACTGCTCGAGCTCGAGTTCAGTTTAATAATTATCAAATTAAATTCGAATAATTTACG
1 TTTAGAACTGCTCGAGCTCGAGTTCAGTTTAATAATTATCAAATTAAATTCGAATAATTTACG
68209676 T
1 T
68209677 ACACCTATAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (63 bp):
TTTAGAACTGCTCGAGCTCGAGTTCAGTTTAATAATTATCAAATTAAATTCGAATAATTTACG
Found at i:68210348 original size:31 final size:31
Alignment explanation
Indices: 68210313--68210371 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
68210303 TATTTAGAGT
*
68210313 TTAAATTTGTTAATTATTCTCATATTAAAGC
1 TTAAATTTGATAATTATTCTCATATTAAAGC
*
68210344 TTAAATTTGATAATTATTTTCATATTAA
1 TTAAATTTGATAATTATTCTCATATTAA
68210372 TGTTTGAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (31 bp):
TTAAATTTGATAATTATTCTCATATTAAAGC
Found at i:68215566 original size:12 final size:12
Alignment explanation
Indices: 68215549--68215586 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
68215539 TACACTTCCC
*
68215549 CCACCTCCACCT
1 CCACCTCCGCCT
68215561 CCACCTCCGCCT
1 CCACCTCCGCCT
*
68215573 CCGCCTCCGCCT
1 CCACCTCCGCCT
68215585 CC
1 CC
68215587 TGTACCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.68, G:0.08, T:0.16
Consensus pattern (12 bp):
CCACCTCCGCCT
Found at i:68215579 original size:18 final size:18
Alignment explanation
Indices: 68215552--68215586 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68215542 ACTTCCCCCA
68215552 CCTCCACCTCCACCTCCG
1 CCTCCACCTCCACCTCCG
* *
68215570 CCTCCGCCTCCGCCTCC
1 CCTCCACCTCCACCTCC
68215587 TGTACCAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.69, G:0.09, T:0.17
Consensus pattern (18 bp):
CCTCCACCTCCACCTCCG
Found at i:68215600 original size:60 final size:60
Alignment explanation
Indices: 68215504--68215647 Score: 207
Period size: 60 Copynumber: 2.4 Consensus size: 60
68215494 ACTTCCACCC
* * *
68215504 CCGCCTCCACCTCCTCCCCCTCCTGTACCAAAATGTACACTTCCCCCACCTCCACCTCCA
1 CCGCCGCCACCACCTCCACCTCCTGTACCAAAATGTACACTTCCCCCACCTCCACCTCCA
* * * * * *
68215564 CCTCCGCCTCCGCCTCCGCCTCCTGTACCAAAATGTACATTTCCCCCACCTCCACCTCCT
1 CCGCCGCCACCACCTCCACCTCCTGTACCAAAATGTACACTTCCCCCACCTCCACCTCCA
68215624 CCGCCGCCACCACCTCCACCTCCT
1 CCGCCGCCACCACCTCCACCTCCT
68215648 CCGCCGCCTC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 73 1.00
ACGTcount: A:0.16, C:0.57, G:0.07, T:0.20
Consensus pattern (60 bp):
CCGCCGCCACCACCTCCACCTCCTGTACCAAAATGTACACTTCCCCCACCTCCACCTCCA
Found at i:68215638 original size:24 final size:24
Alignment explanation
Indices: 68215609--68215655 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
68215599 TACATTTCCC
68215609 CCACCTCCACCTCCTCCGCCGCCA
1 CCACCTCCACCTCCTCCGCCGCCA
68215633 CCACCTCCACCTCCTCCGCCGCC
1 CCACCTCCACCTCCTCCGCCGCC
68215656 TCCTTGTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.11, C:0.68, G:0.09, T:0.13
Consensus pattern (24 bp):
CCACCTCCACCTCCTCCGCCGCCA
Found at i:68218160 original size:27 final size:27
Alignment explanation
Indices: 68218130--68218197 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
68218120 ACCATTAAAC
* *
68218130 CGTGGCTAAAATGTTACAACACGAAAA
1 CGTGACTAAAACGTTACAACACGAAAA
*
68218157 CGTGACTAAAACGTTATAACACGAAAA
1 CGTGACTAAAACGTTACAACACGAAAA
*
68218184 CATGACTAAAACGT
1 CGTGACTAAAACGT
68218198 AAGATTTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.46, C:0.19, G:0.16, T:0.19
Consensus pattern (27 bp):
CGTGACTAAAACGTTACAACACGAAAA
Found at i:68221569 original size:11 final size:11
Alignment explanation
Indices: 68221553--68221609 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
68221543 ATATATACTA
68221553 AATAAAATAAT
1 AATAAAATAAT
68221564 AATAAAATAAT
1 AATAAAATAAT
*
68221575 ATTTAAAATCAA-
1 A-ATAAAAT-AAT
* *
68221587 ATTAAAATATT
1 AATAAAATAAT
*
68221598 AATAAACTAAT
1 AATAAAATAAT
68221609 A
1 A
68221610 TTTATTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 1 0.03
11 28 0.74
12 7 0.18
13 2 0.05
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAAAATAAT
Done.