Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 216 of 222
Found at i:68222079 original size:23 final size:23
Alignment explanation
Indices: 68222053--68222099 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
68222043 TTTCTTACTG
*
68222053 TAGTAATTTTCGGGGTATTACAA
1 TAGTAATTTTCGGGATATTACAA
*
68222076 TAGTAATTTTTGGGATATTACAA
1 TAGTAATTTTCGGGATATTACAA
68222099 T
1 T
68222100 TAGGGTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAA
Found at i:68223075 original size:14 final size:14
Alignment explanation
Indices: 68223056--68223082 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68223046 AAGAAAGACG
68223056 TATGAAAATTTTAT
1 TATGAAAATTTTAT
68223070 TATGAAAATTTTA
1 TATGAAAATTTTA
68223083 CCAATTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TATGAAAATTTTAT
Found at i:68224528 original size:25 final size:25
Alignment explanation
Indices: 68224497--68224562 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
68224487 GGCTCTCATG
*
68224497 AGCTTCCCGTTATATGACCCAGATA
1 AGCTTCCCGTTATATGACCCACATA
* * * * * *
68224522 AGTTTCCTGTAACATGACTCACATG
1 AGCTTCCCGTTATATGACCCACATA
68224547 AGCTTCCCGTTATATG
1 AGCTTCCCGTTATATG
68224563 GCTTGAGAGG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (25 bp):
AGCTTCCCGTTATATGACCCACATA
Found at i:68231979 original size:21 final size:20
Alignment explanation
Indices: 68231953--68232002 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
68231943 ATATCAATTT
68231953 TTTTAAAAAATATTCATATAA
1 TTTTAAAAAATATTCA-ATAA
** *
68231974 TTTTAATTTAATATTTAATAA
1 TTTTAA-AAAATATTCAATAA
68231995 TTTTAAAA
1 TTTTAAAA
68232003 TATTTTTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTAAAAAATATTCAATAA
Found at i:68232004 original size:18 final size:19
Alignment explanation
Indices: 68231959--68232007 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
68231949 ATTTTTTTAA
*
68231959 AAAATATTCATATAATTTT
1 AAAATATTTATATAATTTT
68231978 AATTTAATATTTA-ATAATTTT
1 AA---AATATTTATATAATTTT
68231999 AAAATATTT
1 AAAATATTT
68232008 TTCATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 7 0.27
19 2 0.08
21 10 0.38
22 7 0.27
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAATATTTATATAATTTT
Found at i:68234622 original size:32 final size:33
Alignment explanation
Indices: 68234580--68234664 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 33
68234570 TTAGGCCTCC
68234580 TATATTTATTTTT-AT-TTTAATATATATTTATAT
1 TATATTTATTTTTAATATTTAATA-AT-TTTATAT
68234613 TATA-TTATTTTTAATATTTAATAATTTTATACT
1 TATATTTATTTTTAATATTTAATAATTTTATA-T
*
68234646 T-T-TTTATTTATTAAAATTT
1 TATATTTATTT-TTAATATTT
68234665 TTTTATATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
32 21 0.46
33 18 0.39
34 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (33 bp):
TATATTTATTTTTAATATTTAATAATTTTATAT
Found at i:68234625 original size:16 final size:16
Alignment explanation
Indices: 68234580--68234643 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
68234570 TTAGGCCTCC
*
68234580 TATATTTATTTTTATTT
1 TATA-TTATTTTTATAT
*
68234597 TA-ATATATATTTATAT
1 TATAT-TATTTTTATAT
68234613 TATATTATTTTTAATAT
1 TATATTATTTTT-ATAT
* *
68234630 T-TAATAATTTTATA
1 TATATTATTTTTATA
68234644 CTTTTTTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
15 4 0.10
16 26 0.67
17 9 0.23
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTATTTTTATAT
Found at i:68234629 original size:23 final size:22
Alignment explanation
Indices: 68234602--68234705 Score: 72
Period size: 23 Copynumber: 4.7 Consensus size: 22
68234592 TATTTTAATA
68234602 TATATTTATATTATATTATTTT
1 TATATTTATATTATATTATTTT
*
68234624 TAATATTTAATAATTTTA-TACTTTT
1 T-ATATTT-AT-ATTATATTA-TTTT
* *
68234649 T-TATTTAT-TAAAATT-TTTT
1 TATATTTATATTATATTATTTT
* *
68234668 TATATTTATCTTAACATTATTTT
1 TATATTTATATT-ATATTATTTT
* *
68234691 AATGTTTATATTATA
1 TATATTTATATTATA
68234706 ATAATATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
19 5 0.08
20 9 0.14
21 2 0.03
22 9 0.14
23 24 0.38
24 4 0.06
25 10 0.16
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (22 bp):
TATATTTATATTATATTATTTT
Found at i:68234642 original size:27 final size:26
Alignment explanation
Indices: 68234594--68234651 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
68234584 TTTATTTTTA
* * *
68234594 TTTTAATATATATTTATATTATATTAT
1 TTTTAATATATAATAATATTATACT-T
* *
68234621 TTTTAATATTTAATAATTTTATACTT
1 TTTTAATATATAATAATATTATACTT
68234647 TTTTA
1 TTTTA
68234652 TTTATTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTTAATATATAATAATATTATACTT
Found at i:68240953 original size:27 final size:28
Alignment explanation
Indices: 68240897--68240957 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
68240887 TTGAACCCCG
68240897 AACTCCGAACTTAGAACCTTGAATCCTA
1 AACTCCGAACTTAGAACCTTGAATCCTA
*
68240925 AACTCCGAACTT-GAATCTTGAA-CCTTA
1 AACTCCGAACTTAGAACCTTGAATCC-TA
68240952 AACTCC
1 AACTCC
68240958 AAAATCGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 2 0.06
27 17 0.55
28 12 0.39
ACGTcount: A:0.34, C:0.30, G:0.10, T:0.26
Consensus pattern (28 bp):
AACTCCGAACTTAGAACCTTGAATCCTA
Found at i:68240967 original size:27 final size:26
Alignment explanation
Indices: 68240914--68240974 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
68240904 AACTTAGAAC
* * *
68240914 CTTGAATCCTAAACTCCGAACTTGAAT
1 CTTGAA-CCTAAACTCCAAAATCGAAT
68240941 CTTGAACCTTAAACTCCAAAATCGAAT
1 CTTGAACC-TAAACTCCAAAATCGAAT
*
68240968 CTCGAAC
1 CTTGAAC
68240975 TCGAATACTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (26 bp):
CTTGAACCTAAACTCCAAAATCGAAT
Found at i:68255060 original size:60 final size:63
Alignment explanation
Indices: 68254987--68255110 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 63
68254977 TTGCAAATTC
* *
68254987 AAATATATTTTAA-T-T-TGTCATAATTTTAGAATTTCTTTTTTAGGTTAGAATTAACTTGGG
1 AAATATATTTTAATTATATATCATAATTTTAGAATTTCTTTTGTAGGTTAGAATTAACTTGGG
68255047 AAATATATTTTAATTTATATATCATAATTTTAGAATTTCTTTTGTAGGTTAGAATTAACTTGGG
1 AAATATATTTTAA-TTATATATCATAATTTTAGAATTTCTTTTGTAGGTTAGAATTAACTTGGG
68255111 GTTTCACCTA
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
60 13 0.22
62 1 0.02
63 1 0.02
64 43 0.74
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (63 bp):
AAATATATTTTAATTATATATCATAATTTTAGAATTTCTTTTGTAGGTTAGAATTAACTTGGG
Found at i:68255470 original size:21 final size:21
Alignment explanation
Indices: 68255440--68255489 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 21
68255430 TTTATCCTTT
*
68255440 TTTTTCTTAATTAAAATATTA
1 TTTTTATTAATTAAAATATTA
68255461 TTTTTATT-A--AAAATATTA
1 TTTTTATTAATTAAAATATTA
*
68255479 ATTTTA-TAATT
1 TTTTTATTAATT
68255490 GATACTGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
17 1 0.04
18 15 0.62
20 1 0.04
21 7 0.29
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTTATTAATTAAAATATTA
Found at i:68273900 original size:21 final size:21
Alignment explanation
Indices: 68273874--68273929 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
68273864 AATAGCGGTG
*
68273874 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
68273895 GCGGTGAAATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
68273916 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
68273930 AACAATGGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:68274135 original size:30 final size:29
Alignment explanation
Indices: 68274098--68274254 Score: 224
Period size: 30 Copynumber: 5.2 Consensus size: 29
68274088 ATTCATTTAA
68274098 TAAAATACACTACATATATTTTTTTATTT
1 TAAAATACACTACATATATTTTTTTATTT
*
68274127 CTAGAATACACTACATATATTTTTTTTATTT
1 -TAAAATACACTACATATA-TTTTTTTATTT
68274158 TGAAAATACACTACATATATTTTTTTATTTT
1 T-AAAATACACTACATATATTTTTTTA-TTT
*
68274189 TAAAATACACTACATGTATTTTTTTATTAT
1 TAAAATACACTACATATATTTTTTTATT-T
* *
68274219 TAAAATCCATTACATATATTTTTTTATTTT
1 TAAAATACACTACATATATTTTTTTA-TTT
68274249 TAAAAT
1 TAAAAT
68274255 TTTAAATACA
Statistics
Matches: 116, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
29 2 0.02
30 81 0.70
31 33 0.28
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (29 bp):
TAAAATACACTACATATATTTTTTTATTT
Found at i:68274164 original size:61 final size:60
Alignment explanation
Indices: 68274098--68274254 Score: 235
Period size: 61 Copynumber: 2.6 Consensus size: 60
68274088 ATTCATTTAA
*
68274098 TAAAATACACTACATATATTTTTTTATTTCTAGAATACACTACATATATTTTTTTTATT-T
1 TAAAATACACTACATATATTTTTTTATTTCTAAAATACACTACATATA-TTTTTTTATTAT
* *
68274158 TGAAAATACACTACATATATTTTTTTATTTTTAAAATACACTACATGTATTTTTTTATTAT
1 T-AAAATACACTACATATATTTTTTTATTTCTAAAATACACTACATATATTTTTTTATTAT
* * *
68274219 TAAAATCCATTACATATATTTTTTTATTTTTAAAAT
1 TAAAATACACTACATATATTTTTTTATTTCTAAAAT
68274255 TTTAAATACA
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
60 44 0.49
61 46 0.51
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (60 bp):
TAAAATACACTACATATATTTTTTTATTTCTAAAATACACTACATATATTTTTTTATTAT
Found at i:68275218 original size:22 final size:23
Alignment explanation
Indices: 68275192--68275237 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
68275182 AAATATTAGC
*
68275192 ATTATAA-AAATTGAATGATAAA
1 ATTATAATAAATTAAATGATAAA
*
68275214 ATTATAATAAATTAAATTATAAA
1 ATTATAATAAATTAAATGATAAA
68275237 A
1 A
68275238 ATTTGAACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
ATTATAATAAATTAAATGATAAA
Found at i:68286804 original size:49 final size:49
Alignment explanation
Indices: 68286747--68286845 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
68286737 AATCGCGTAC
68286747 TAATCAATTTGAAACCTGTATAAGTTTTACCATTGAA-CTCGTGGTGTGA
1 TAATCAATTTGAAACCTGTATAAGTTTTACCATTGAATCT-GTGGTGTGA
**
68286796 TAATCAATTTGAAATTTGTATAAGTTTTACCATTGAATCTGTGGTGTGA
1 TAATCAATTTGAAACCTGTATAAGTTTTACCATTGAATCTGTGGTGTGA
68286845 T
1 T
68286846 GATACGCTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 45 0.96
50 2 0.04
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40
Consensus pattern (49 bp):
TAATCAATTTGAAACCTGTATAAGTTTTACCATTGAATCTGTGGTGTGA
Found at i:68293094 original size:20 final size:21
Alignment explanation
Indices: 68293054--68293094 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
68293044 TTTATTTATT
*
68293054 TGATTTTTTTTGAAATATTTA
1 TGATTTTTTTTAAAATATTTA
68293075 TGATTTTTTTTAAAAT-TTTA
1 TGATTTTTTTTAAAATATTTA
68293095 CTAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (21 bp):
TGATTTTTTTTAAAATATTTA
Found at i:68298639 original size:42 final size:40
Alignment explanation
Indices: 68298574--68298682 Score: 110
Period size: 42 Copynumber: 2.6 Consensus size: 40
68298564 AGCTGCATAA
* * *
68298574 TTGGCAAGAAAGCTCGTCAAACTGAGCAAGTTTTCTACACAG
1 TTGGCAAGAAAGCTCATCCAACTGAG-AA-CTTTCTACACAG
* *
68298616 TTGGCAAGAAAACTCATCCAACTGGGAGAACTTTCTACATAG
1 TTGGCAAGAAAGCTCATCCAACT--GAGAACTTTCTACACAG
* * *
68298658 TTGACAGGAAAGCTCTTCCAACTGA
1 TTGGCAAGAAAGCTCATCCAACTGA
68298683 ACGAGCTTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
40 2 0.04
42 49 0.88
43 2 0.04
44 3 0.05
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (40 bp):
TTGGCAAGAAAGCTCATCCAACTGAGAACTTTCTACACAG
Found at i:68298692 original size:42 final size:42
Alignment explanation
Indices: 68298578--68298696 Score: 107
Period size: 42 Copynumber: 2.9 Consensus size: 42
68298568 GCATAATTGG
* * * * * *
68298578 CAAGAAAGCTCGTCAAACTGAGCAAGTTTTCTACACAGTTGG
1 CAAGAAAGCTCATCCAACTGAACGAGCTTTCTACACAGTTGA
* * * *
68298620 CAAGAAAACTCATCCAACTGGGA-GAACTTTCTACATAGTTGA
1 CAAGAAAGCTCATCCAACT-GAACGAGCTTTCTACACAGTTGA
* *
68298662 CAGGAAAGCTCTTCCAACTGAACGAGCTTTC-ACAC
1 CAAGAAAGCTCATCCAACTGAACGAGCTTTCTACAC
68298697 CCTCTAAAAA
Statistics
Matches: 59, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
41 5 0.08
42 53 0.90
43 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
CAAGAAAGCTCATCCAACTGAACGAGCTTTCTACACAGTTGA
Found at i:68303117 original size:30 final size:29
Alignment explanation
Indices: 68303054--68303117 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
68303044 TAAGAATTAT
* *
68303054 AAATTTAGTTTCTATATTTTTATTTTTAG
1 AAATTTAATTTCTATATTTTTAATTTTAG
*
68303083 AAATTTAATTTCTCTAATTTTTAGATTTTA-
1 AAATTTAATTTCTAT-ATTTTTA-ATTTTAG
68303113 AAATT
1 AAATT
68303118 CAAGTCCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 13 0.43
30 12 0.40
31 5 0.17
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (29 bp):
AAATTTAATTTCTATATTTTTAATTTTAG
Found at i:68305350 original size:28 final size:27
Alignment explanation
Indices: 68305314--68305385 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
68305304 TTTCTTTATA
*
68305314 TATATATTTTAGAATTTTTAAAAAATAT
1 TATAAATTTTAGAATTTTT-AAAAATAT
*
68305342 TATAAATTTT-GAAATTTTTATAAATAT
1 TATAAATTTTAG-AATTTTTAAAAATAT
* * *
68305369 TTTGAATTTTAAAATTT
1 TATAAATTTTAGAATTT
68305386 ATTTTGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (27 bp):
TATAAATTTTAGAATTTTTAAAAATAT
Found at i:68309229 original size:21 final size:20
Alignment explanation
Indices: 68309183--68309230 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
68309173 AACCCTACTG
* * *
68309183 TTTTCGTTGTTGTTTTTTCA
1 TTTTTGTTGTTATTTTATCA
68309203 TATTTTGTTGTTATTTTATCA
1 T-TTTTGTTGTTATTTTATCA
68309224 CTTTTTG
1 -TTTTTG
68309231 CCACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.10, C:0.08, G:0.12, T:0.69
Consensus pattern (20 bp):
TTTTTGTTGTTATTTTATCA
Found at i:68309484 original size:16 final size:17
Alignment explanation
Indices: 68309453--68309486 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
68309443 TATATTTTAA
*
68309453 AAAATTATATAAAAAAT
1 AAAATTATAAAAAAAAT
68309470 AAAATT-TAAAAAAAAT
1 AAAATTATAAAAAAAAT
68309486 A
1 A
68309487 CGAGTCCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATTATAAAAAAAAT
Found at i:68310211 original size:15 final size:13
Alignment explanation
Indices: 68310185--68310219 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
68310175 TTTATTAGTA
68310185 TTTATTTTAAATT
1 TTTATTTTAAATT
68310198 TTTATTTGTAAAATT
1 TTTATTT-T-AAATT
68310213 TTTATTT
1 TTTATTT
68310220 AATATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 1 0.05
15 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (13 bp):
TTTATTTTAAATT
Found at i:68312026 original size:75 final size:74
Alignment explanation
Indices: 68311937--68312090 Score: 299
Period size: 75 Copynumber: 2.1 Consensus size: 74
68311927 ACATTAACCT
68311937 CCTATTTATGAGTTGAGGATGGGCTATGGGTAATTTTAGGCATTCTGTAAAAAAAAAAAACAAAT
1 CCTATTTATGAGTTGAGGATGGGCTATGGGTAATTTTAGGCATTCTGT-AAAAAAAAAAACAAAT
68312002 ATGATCAGAA
65 ATGATCAGAA
68312012 CCTATTTATGAGTTGAGGATGGGCTATGGGTAATTTTAGGCATTCTGTAAAAAAAAAAACAAATA
1 CCTATTTATGAGTTGAGGATGGGCTATGGGTAATTTTAGGCATTCTGTAAAAAAAAAAACAAATA
68312077 TGATCAGAA
66 TGATCAGAA
68312086 CCTAT
1 CCTAT
68312091 AATAAGATTG
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 31 0.39
75 48 0.61
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (74 bp):
CCTATTTATGAGTTGAGGATGGGCTATGGGTAATTTTAGGCATTCTGTAAAAAAAAAAACAAATA
TGATCAGAA
Found at i:68312486 original size:21 final size:19
Alignment explanation
Indices: 68312439--68312487 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
68312429 TTTTAGATAC
*
68312439 ATATTTTTTTTTATAATTT
1 ATATTTTATTTTATAATTT
* *
68312458 ATAGTTTATTTTATATTTT
1 ATATTTTATTTTATAATTT
68312477 AAATATTTTAT
1 --ATATTTTAT
68312488 AAGTACCGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.67
21 8 0.33
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
ATATTTTATTTTATAATTT
Found at i:68312605 original size:21 final size:22
Alignment explanation
Indices: 68312561--68312608 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
68312551 TATAATTAAA
68312561 TATAAAAACATATAATATTATT
1 TATAAAAACATATAATATTATT
*
68312583 TATATAAACA-ATAAT-TTATTT
1 TATAAAAACATATAATATTA-TT
68312604 TATAA
1 TATAA
68312609 CTTTTCGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 3 0.13
21 11 0.48
22 9 0.39
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
TATAAAAACATATAATATTATT
Found at i:68320145 original size:42 final size:42
Alignment explanation
Indices: 68320050--68320151 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 42
68320040 TTATTAAATC
68320050 ATTAA-CATAAAAATCAATCGTTCAACAATTTATAAGCAAAAA
1 ATTAACCA-AAAAATCAATCGTTCAACAATTTATAAGCAAAAA
** * * * * *
68320092 ACGAACAAAAAAATCAA-CAGTTTAATAATTTATATGCAACAA
1 ATTAACCAAAAAATCAATC-GTTCAACAATTTATAAGCAAAAA
*
68320134 ATTAACCAAAAAAACAAT
1 ATTAACCAAAAAATCAAT
68320152 AATTTAAGTT
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.02
42 44 0.96
43 1 0.02
ACGTcount: A:0.57, C:0.15, G:0.05, T:0.24
Consensus pattern (42 bp):
ATTAACCAAAAAATCAATCGTTCAACAATTTATAAGCAAAAA
Found at i:68321593 original size:22 final size:22
Alignment explanation
Indices: 68321550--68321593 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
68321540 AGATACTCAC
*
68321550 ACTTTGGAGAAACGTACTAAAT
1 ACTTTGGAGAAACGTACCAAAT
*
68321572 ACTTTGGAGAAACGTCCCAAAT
1 ACTTTGGAGAAACGTACCAAAT
68321594 TTTCCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (22 bp):
ACTTTGGAGAAACGTACCAAAT
Found at i:68331261 original size:47 final size:47
Alignment explanation
Indices: 68331192--68331285 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
68331182 CAGGTGCCCT
* *
68331192 AATCGATACGTATCTCTCGTTTGTTACAAGGAAAGATGGAAAGCATG
1 AATCGATACGTAGCTCTCGTTTGTGACAAGGAAAGATGGAAAGCATG
* *
68331239 AATCGATACGTAGCTCTGGTTTGTGACAAGGAAATATGGAAAGCATG
1 AATCGATACGTAGCTCTCGTTTGTGACAAGGAAAGATGGAAAGCATG
68331286 GGTCAGCCGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27
Consensus pattern (47 bp):
AATCGATACGTAGCTCTCGTTTGTGACAAGGAAAGATGGAAAGCATG
Found at i:68333187 original size:109 final size:109
Alignment explanation
Indices: 68332996--68333203 Score: 346
Period size: 109 Copynumber: 1.9 Consensus size: 109
68332986 TGAGTTTAAA
* *
68332996 TTCAATAGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
*
68333061 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGCAAAACATTGCCCTATTTTTGAAAAGTT
* *
68333105 TTCAAAAGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
1 TTCAAAAGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
*
68333169 CCTCGAATTTCCAAACGCAAAATATTGCCCTATTT
65 CCTCGAATTTCCAAACGCAAAACATTGCCCTATTT
68333204 GGAAATATTT
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
108 1 0.01
109 91 0.99
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (109 bp):
TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
CTCGAATTTCCAAACGCAAAACATTGCCCTATTTTTGAAAAGTT
Found at i:68333227 original size:18 final size:18
Alignment explanation
Indices: 68333187--68333229 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
68333177 TTCCAAACGC
68333187 AAAATATTGCCCTATTTG
1 AAAATATTGCCCTATTTG
* * * *
68333205 GAAATATTTCCCTTTTTT
1 AAAATATTGCCCTATTTG
68333223 AAAATAT
1 AAAATAT
68333230 GATATTCATG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (18 bp):
AAAATATTGCCCTATTTG
Found at i:68333739 original size:8 final size:8
Alignment explanation
Indices: 68333642--68333751 Score: 50
Period size: 8 Copynumber: 14.0 Consensus size: 8
68333632 ATATATGCAT
68333642 TATA-AAA
1 TATATAAA
*
68333649 TATATATA
1 TATATAAA
*
68333657 TATATATA
1 TATATAAA
68333665 TA-AGTAAA
1 TATA-TAAA
* *
68333673 TATGTACA
1 TATATAAA
**
68333681 TATATACG
1 TATATAAA
**
68333689 TATATACG
1 TATATAAA
*
68333697 TATATAAC
1 TATATAAA
68333705 TATCATAAA
1 TAT-ATAAA
68333714 -ATATAAA
1 TATATAAA
**
68333721 -A-AGTATG
1 TATA-TAAA
68333728 TATATAAA
1 TATATAAA
68333736 TATATAAA
1 TATATAAA
*
68333744 AATATAAA
1 TATATAAA
68333752 AAAATATATA
Statistics
Matches: 82, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
6 1 0.01
7 13 0.16
8 63 0.77
9 5 0.06
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (8 bp):
TATATAAA
Found at i:68333746 original size:10 final size:10
Alignment explanation
Indices: 68333714--68333761 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
68333704 CTATCATAAA
68333714 ATATAAAAAGT
1 ATATAAAAA-T
*
68333725 ATGTATATAAAT
1 A--TATAAAAAT
68333737 ATATAAAAAT
1 ATATAAAAAT
*
68333747 ATAAAAAAAT
1 ATATAAAAAT
68333757 ATATA
1 ATATA
68333762 CTCCTATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 21 0.68
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:68335540 original size:88 final size:88
Alignment explanation
Indices: 68335469--68335981 Score: 818
Period size: 88 Copynumber: 5.8 Consensus size: 88
68335459 TCTTTGATCT
* * *
68335469 GCTCCA-CTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGAA
1 GCTCCATC-ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAA
*
68335533 GGCAAGATCTGTTGTCTTCAACCA
65 GGCAAGATCTTTTGTCTTCAACCA
* *
68335557 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
*
68335622 GAAAGATCTTTTGTCTTCAACCA
66 GCAAGATCTTTTGTCTTCAACCA
*
68335645 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAAT-ACAAGAA
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGA-AGGAA
**
68335709 GGCAAGATC-TTTAACTTCAACCA
65 GGCAAGATCTTTTGTCTTCAACCA
*
68335732 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGTAGGAAG
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
68335797 GCAAGATCTTTTGTCTTCAACCA
66 GCAAGATCTTTTGTCTTCAACCA
* * *
68335820 GCTTCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
*
68335885 GAAAGATCTTTTGTCTTCAACCA
66 GCAAGATCTTTTGTCTTCAACCA
* *
68335908 GTTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAAT-ACAAGAA
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGA-AGGAA
68335972 GGCAAGATCT
65 GGCAAGATCT
68335982 GTAACTTCAT
Statistics
Matches: 395, Mismatches: 25, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
87 82 0.21
88 312 0.79
89 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (88 bp):
GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
GCAAGATCTTTTGTCTTCAACCA
Found at i:68335782 original size:175 final size:175
Alignment explanation
Indices: 68335469--68335981 Score: 841
Period size: 175 Copynumber: 2.9 Consensus size: 175
68335459 TCTTTGATCT
* *
68335469 GCTCCA-CTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGA-AGGA
1 GCTCCATC-ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAT-ACAGGA
68335532 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
64 AGGCAAGATCT-TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGA
* *
68335597 TCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCA
128 CCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCA
* *
68335645 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAG
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAG
**
68335710 GCAAGATCTTTAACTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCT
66 GCAAGATCTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCT
*
68335775 GCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCA
131 GCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCA
* *
68335820 GCTTCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAG
* *
68335885 GAAAGATCTTTTGTCTTCAACCAGTTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACC
66 GCAAGATC-TTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACC
* *
68335950 TGCTTCGCTGTCAATACAAGAAGGCAAGATCT
130 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
68335982 GTAACTTCAT
Statistics
Matches: 314, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
175 165 0.53
176 148 0.47
177 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (175 bp):
GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAG
GCAAGATCTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCT
GCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCA
Found at i:68335813 original size:263 final size:263
Alignment explanation
Indices: 68335469--68335990 Score: 956
Period size: 263 Copynumber: 2.0 Consensus size: 263
68335459 TCTTTGATCT
* *
68335469 GCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGAAG
1 GCTCCACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
68335534 GCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATC
66 GCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATC
68335599 TGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
131 TGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
68335664 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAGGCAAGATCTTTAACTTCAA
196 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAGGCAAGATCTGTAACTTCAA
68335729 CCA
261 CCA
* *
68335732 GCTCCA-TCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGTAGGAA
1 GCTCCACT-ACAACCGAGAGAGGCAAGGCTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAA
* *
68335796 GGCAAGATCTTTTGTCTTCAACCAGCTTCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGAT
65 GGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGAT
*
68335861 CTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCAGTTCCATCACAACCGAGA
130 CTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGA
68335926 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAGGCAAGATCTGTAACTTCA
195 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAGGCAAGATCTGTAACTTCA
68335991 TTGATCTGTC
Statistics
Matches: 250, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
262 1 0.00
263 249 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (263 bp):
GCTCCACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGACCTGCTTCGCTGTCAATGAAGGAAG
GCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATC
TGCTTCGCTGTCAATGCAGGAAGGAAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAAGAAGGCAAGATCTGTAACTTCAA
CCA
Found at i:68340708 original size:19 final size:20
Alignment explanation
Indices: 68340679--68340727 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
68340669 CACTTCGTGA
* *
68340679 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
68340698 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
68340718 AAATG-AATGC
1 AAATGTAATGC
68340728 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:68342285 original size:109 final size:109
Alignment explanation
Indices: 68342094--68342301 Score: 346
Period size: 109 Copynumber: 1.9 Consensus size: 109
68342084 TGAGTTTAAA
* *
68342094 TTCAATAGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
*
68342159 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGCAAAACATTGCCCTATTTTTGAAAAGTT
* *
68342203 TTCAAAAGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
1 TTCAAAAGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
*
68342267 CCTCGAATTTCCAAACGCAAAATATTGCCCTATTT
65 CCTCGAATTTCCAAACGCAAAACATTGCCCTATTT
68342302 GGAAATATTT
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
108 1 0.01
109 91 0.99
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (109 bp):
TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
CTCGAATTTCCAAACGCAAAACATTGCCCTATTTTTGAAAAGTT
Found at i:68342325 original size:18 final size:18
Alignment explanation
Indices: 68342285--68342327 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
68342275 TTCCAAACGC
68342285 AAAATATTGCCCTATTTG
1 AAAATATTGCCCTATTTG
* * * *
68342303 GAAATATTTCCCTTTTTT
1 AAAATATTGCCCTATTTG
68342321 AAAATAT
1 AAAATAT
68342328 GATATTCATG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (18 bp):
AAAATATTGCCCTATTTG
Found at i:68342838 original size:8 final size:8
Alignment explanation
Indices: 68342739--68342850 Score: 52
Period size: 8 Copynumber: 14.0 Consensus size: 8
68342729 ATATATGCAT
68342739 TATA-AAA
1 TATATAAA
*
68342746 TATATATA
1 TATATAAA
*
68342754 TATATATA
1 TATATAAA
68342762 TATAAGTAAA
1 TAT-A-TAAA
* *
68342772 TATGTACA
1 TATATAAA
**
68342780 TATATACG
1 TATATAAA
**
68342788 TATATACG
1 TATATAAA
*
68342796 TATATAAC
1 TATATAAA
68342804 TATCATAAA
1 TAT-ATAAA
68342813 -ATATAAA
1 TATATAAA
**
68342820 -A-AGTATG
1 TATA-TAAA
68342827 TATATAAA
1 TATATAAA
68342835 TATATAAA
1 TATATAAA
*
68342843 AATATAAA
1 TATATAAA
68342851 AAAATATATA
Statistics
Matches: 84, Mismatches: 14, Indels: 13
0.76 0.13 0.12
Matches are distributed among these distances:
6 1 0.01
7 12 0.14
8 59 0.70
9 6 0.07
10 6 0.07
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.36
Consensus pattern (8 bp):
TATATAAA
Found at i:68342845 original size:10 final size:10
Alignment explanation
Indices: 68342813--68342860 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
68342803 CTATCATAAA
68342813 ATATAAAAAGT
1 ATATAAAAA-T
*
68342824 ATGTATATAAAT
1 A--TATAAAAAT
68342836 ATATAAAAAT
1 ATATAAAAAT
*
68342846 ATAAAAAAAT
1 ATATAAAAAT
68342856 ATATA
1 ATATA
68342861 CTCCTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 21 0.68
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:68343014 original size:30 final size:30
Alignment explanation
Indices: 68342940--68343016 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 30
68342930 AAAAGTGTTA
* * **
68342940 AAAAGGGACTAGATCG-AAGTAAAAGCAAC
1 AAAAGGGACTAAATCGAAAATAAAAAAAAC
* * *
68342969 AACACGGGGCAAAATCGAAAATAAAAAAAAC
1 AA-AAGGGACTAAATCGAAAATAAAAAAAAC
68343000 AAAAGGGACTAAATCGA
1 AAAAGGGACTAAATCGA
68343017 GAGAAAAGTA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
29 2 0.06
30 22 0.61
31 12 0.33
ACGTcount: A:0.56, C:0.14, G:0.21, T:0.09
Consensus pattern (30 bp):
AAAAGGGACTAAATCGAAAATAAAAAAAAC
Found at i:68347236 original size:57 final size:57
Alignment explanation
Indices: 68347173--68347284 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
68347163 AAACTAAGTG
* *
68347173 TAATGAAACATTTAAAATACAAAAAGAATTTTCATGTCACCTGTTACATATCAGTCA
1 TAATGAAACATTTAAAATAAAAAAAGAATTTTCATGACACCTGTTACATATCAGTCA
68347230 TAATGAAACATTTAAAATAAAAAAAGAATTTTCATGACACCTGTTACATATCAGT
1 TAATGAAACATTTAAAATAAAAAAAGAATTTTCATGACACCTGTTACATATCAGT
68347285 ATTTTAATTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (57 bp):
TAATGAAACATTTAAAATAAAAAAAGAATTTTCATGACACCTGTTACATATCAGTCA
Found at i:68347464 original size:27 final size:25
Alignment explanation
Indices: 68347437--68347486 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
68347427 AAATTTAAAT
*
68347437 TTAGATACTAAATTAAATAAAAAAAA
1 TTAGATACCAAATTAAA-AAAAAAAA
* *
68347463 TTAGGTGCCAAATTAAAAAAAAAA
1 TTAGATACCAAATTAAAAAAAAAA
68347487 TTGTCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.62, C:0.06, G:0.08, T:0.24
Consensus pattern (25 bp):
TTAGATACCAAATTAAAAAAAAAAA
Found at i:68348345 original size:304 final size:298
Alignment explanation
Indices: 68347730--68348637 Score: 931
Period size: 304 Copynumber: 3.0 Consensus size: 298
68347720 TATAATAAAT
* * * * * * *
68347730 AATGAAGTTTTGATTGAGTGATAAATTTAAAGTTTTACTAATACATTTAGAGCGA-GTCCAACCC
1 AATGAAGTTTTGGTTGAGTGATAAATTTAAAATTTTACTAATGCAATT-G-GTGAGGTTCAA--A
* * * * *
68347794 GCACCATATGCATA-TTTTATTGGTTTTTGTTAAAATAAAAAGATTAAAATACCCTCGAATAAT-
62 TCACCATATGCAAATTTTTATTGGTTTTTGTTAAAATGAAAAGACTAAAATA-CCTTGAATAATA
* * * * * * *
68347857 -ATGACTTTGATCACGGAA-GACATTTTCGTAATTTCTCTAACCGAGTTGGTGTATGGTTGACTT
126 GATTACTTTAATTACGAAAGGACATTTTCGTAATTTTTCTAATCGAGTTGGTGTATGGTTGACTC
* * *
68347920 GTGACACCAACTCAATCAGAGATTTTATT--AAT-AG--TACAT--ATATACAACTGATGGAAAT
191 GTGACACCAACTCAGTTAGAGATTTTATTAAAATAAGTATATATAGATATACAACTGAT-GAAAT
* * **
68347978 AGTAAATTGTGCATATTAAAATAAAAATGTATAGAATATACAAA
255 AATAAATTGTGCATATTAAAATAAAAATGTATAAAATATATTAA
* ** *
68348022 AATGAAATTTCAGTTGAGTGATAAATTTAAAATTTTACTAATGCAATTGGTGAGGTTCAATTTTC
1 AATGAAGTTTTGGTTGAGTGATAAATTTAAAATTTTACTAATGCAATTGGTGAGGTTCAA--ATC
* * * * *
68348087 ACCTTATGCAAATTTTTATTGGTTTTTGTCAGAATGAAATGGCTAAAATACACTTGAATAATACG
64 ACCATATGCAAATTTTTATTGGTTTTTGTTAAAATGAAAAGACTAAAATAC-CTTGAATAATA-G
* * * *
68348152 ATTACTTTAATTACGAAAGGACATTTTTGTAATTTTTCTAATCGAGTTTGTGTTTGGTTGACTCA
127 ATTACTTTAATTACGAAAGGACATTTTCGTAATTTTTCTAATCGAGTTGGTGTATGGTTGACTCG
*
68348217 TGACACCAACTCAGTTAGAGGTTTTATTAAAATTAAGTATATATAGATATACAACTGATGAATAT
192 TGACACCAACTCAGTTAGAGATTTTATTAAAA-TAAGTATATATAGATATACAACTGATGAA-AT
* * * *
68348282 AATAAAATGTGCATAGTAAAATAAGAATGCATAAAATATATTAA
255 AATAAATTGTGCATATTAAAATAAAAATGTATAAAATATATTAA
* * ** * *
68348326 AATGAAGTTTTGGTTGAGTGGTAAATTTAAGATTTTACTAATGCAATTATTGCGGGTTCAAATCC
1 AATGAAGTTTTGGTTGAGTGATAAATTTAAAATTTTACTAATGCAATTGGTG-AGGTTCAAATCA
* * *
68348391 CCCTATGCAAATTTTAATTGGTTTTTGTTAAAATGAAAAGACTAAAATGCCTTCGAATAATATGG
65 CCATATGCAAATTTTTATTGGTTTTTGTTAAAATGAAAAGACTAAAATACCTT-GAATAATA--G
* * * *****
68348456 CTTACTTTAATTACGAAAGGGCATTTTCATAATTTTTCTAATCGAGTTGGTACCCAGTTGACTCG
127 ATTACTTTAATTACGAAAGGACATTTTCGTAATTTTTCTAATCGAGTTGGTGTATGGTTGACTCG
* * * * *
68348521 TGACACCAACTTAGTTAGCGATTTTATTAATAGTAAGTATAGATATAGATATACAACTAATGGAG
192 TGACACCAACTCAGTTAGAGATTTTATTAA-AATAAGTAT--ATATAGATATACAACTGAT-GAA
* * *
68348586 ATAATAATTTGTACATATTAAAATAAAAATATATAAAATATATTAA
253 ATAATAAATTGTGCATATTAAAATAAAAATGTATAAAATATATTAA
68348632 AATGAA
1 AATGAA
68348638 ACGTTAGTTG
Statistics
Matches: 506, Mismatches: 87, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
290 3 0.01
291 18 0.04
292 81 0.16
295 14 0.03
296 64 0.13
298 2 0.00
299 1 0.00
300 2 0.00
302 7 0.01
303 56 0.11
304 185 0.37
305 8 0.02
306 63 0.12
307 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (298 bp):
AATGAAGTTTTGGTTGAGTGATAAATTTAAAATTTTACTAATGCAATTGGTGAGGTTCAAATCAC
CATATGCAAATTTTTATTGGTTTTTGTTAAAATGAAAAGACTAAAATACCTTGAATAATAGATTA
CTTTAATTACGAAAGGACATTTTCGTAATTTTTCTAATCGAGTTGGTGTATGGTTGACTCGTGAC
ACCAACTCAGTTAGAGATTTTATTAAAATAAGTATATATAGATATACAACTGATGAAATAATAAA
TTGTGCATATTAAAATAAAAATGTATAAAATATATTAA
Found at i:68350198 original size:22 final size:21
Alignment explanation
Indices: 68350171--68350257 Score: 99
Period size: 22 Copynumber: 4.2 Consensus size: 21
68350161 TAGATTAGAA
*
68350171 TTTTGTATGAATATTTTAAATT
1 TTTTGTATGAATATTAT-AATT
68350193 TTTTGTATGAATATTATAATT
1 TTTTGTATGAATATTATAATT
*
68350214 TTTT-TATGAATATTGTAA--
1 TTTTGTATGAATATTATAATT
* *
68350232 TGTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTATAATT
68350253 ATTTT
1 -TTTT
68350258 ATAATTAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
18 3 0.05
19 14 0.25
20 13 0.23
21 8 0.14
22 19 0.33
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (21 bp):
TTTTGTATGAATATTATAATT
Found at i:68350242 original size:19 final size:19
Alignment explanation
Indices: 68350195--68350251 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
68350185 TTTAAATTTT
* *
68350195 TTGTATGAATATTATAATTT
1 TTGTATGAATATTGTAA-TG
*
68350215 TTTTATGAATATTGTAATG
1 TTGTATGAATATTGTAATG
68350234 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
68350252 TATTTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (19 bp):
TTGTATGAATATTGTAATG
Found at i:68350338 original size:19 final size:19
Alignment explanation
Indices: 68350316--68350373 Score: 55
Period size: 22 Copynumber: 2.9 Consensus size: 19
68350306 ATATTGTAAT
*
68350316 AATATTATAGTTTTGTATG
1 AATATTATAATTTTGTATG
68350335 AATATTGCA-AATTTTTTGTATG
1 AATATT--ATAA--TTTTGTATG
*
68350357 AATATTGTAATTTTGTA
1 AATATTATAATTTTGTA
68350374 ATTTTGTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
19 13 0.41
20 1 0.03
21 3 0.09
22 15 0.47
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.52
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:68350368 original size:21 final size:21
Alignment explanation
Indices: 68350326--68350462 Score: 121
Period size: 21 Copynumber: 6.0 Consensus size: 21
68350316 AATATTATAG
*
68350326 TTTTGTATGAATATTGCAAATT
1 TTTTGTATGAATATTG-TAATT
68350348 TTTTGTATGAATATTGTAATTTTGT
1 TTTTGTATGAATATTGTAA---T-T
* *
68350373 AATTTTGTATGAATATTATATTT
1 --TTTTGTATGAATATTGTAATT
*
68350396 TTTTGTATGAATGTTGTAATATT
1 TTTTGTATGAATATTGT-A-ATT
*
68350419 ATAATTTGTATGAATATTGCAATT
1 -T--TTTGTATGAATATTGTAATT
68350443 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
68350463 ATTGTAAATT
Statistics
Matches: 95, Mismatches: 9, Indels: 23
0.75 0.07 0.18
Matches are distributed among these distances:
21 35 0.37
22 17 0.18
23 4 0.04
24 6 0.06
25 2 0.02
26 14 0.15
27 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:68350428 original size:47 final size:46
Alignment explanation
Indices: 68350292--68350474 Score: 213
Period size: 47 Copynumber: 3.8 Consensus size: 46
68350282 TTGGATTAGT
*
68350292 AATTTTTTGTATGAATATTGTAATAATATTATAGTTTTGTATGAATATTGCA
1 AATTTTTTGTATGAATATTG---TAATATTATA-ATTTGTATGAATATT--A
* *
68350344 AATTTTTTGTATGAATATTGTAATTTTGTAATTTTGTATGAATATTA
1 AATTTTTTGTATGAATATTGTAATATTATAA-TTTGTATGAATATTA
* * *
68350391 TATTTTTTTGTATGAATGTTGTAATATTATAATTTGTATGAATATTGC
1 -AATTTTTTGTATGAATATTGTAATATTATAATTTGTATGAATATT-A
*
68350439 AATTTTTTGTATGAATATTGTAATATTGTAAATTTG
1 AATTTTTTGTATGAATATTGTAATATTAT-AATTTG
68350475 CAATTTTTAT
Statistics
Matches: 116, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
47 41 0.35
48 33 0.28
49 22 0.19
52 20 0.17
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (46 bp):
AATTTTTTGTATGAATATTGTAATATTATAATTTGTATGAATATTA
Found at i:68350491 original size:47 final size:46
Alignment explanation
Indices: 68350382--68350491 Score: 100
Period size: 47 Copynumber: 2.4 Consensus size: 46
68350372 TAATTTTGTA
* * *
68350382 TGAA-TATTATAT-TTTTTTGTATGAATGTTGTAATATTAT-AATT
1 TGAATTATTATGTATTTTTTGTATGAATATTGTAATATTGTAAATT
* * * *
68350425 TGTATGAATATTGCAATTTTTTGTATGAATATTGTAATATTGTAAATT
1 TGAATTATTA-TG-TATTTTTTGTATGAATATTGTAATATTGTAAATT
*
68350473 TGCAATTTTTATGTATTTT
1 TG-AATTATTATGTATTTT
68350492 GTTTACATTT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 1 0.02
47 30 0.61
48 8 0.16
49 4 0.08
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.55
Consensus pattern (46 bp):
TGAATTATTATGTATTTTTTGTATGAATATTGTAATATTGTAAATT
Found at i:68350491 original size:95 final size:97
Alignment explanation
Indices: 68350294--68350476 Score: 273
Period size: 95 Copynumber: 1.9 Consensus size: 97
68350284 GGATTAGTAA
*
68350294 TTTTTTGTATGAATATTGTAATAATATTATAGTTTTGTATGAATATTGCAAATTTTTTGTATGAA
1 TTTTTTGTATGAATATTG--ATAATATTATAGATTTGTATGAATATTGCAAATTTTTTGTATGAA
* * *
68350359 TATTGTAATTTTGTAATTTTGTATGAATATTATAT
64 TATTGTAATATTGTAAATTTGCA-GAATATTATAT
*
68350394 TTTTTTGTATGAATGTTG-TAATATTATA-ATTTGTATGAATATTGC-AATTTTTTGTATGAATA
1 TTTTTTGTATGAATATTGATAATATTATAGATTTGTATGAATATTGCAAATTTTTTGTATGAATA
68350456 TTGTAATATTGTAAATTTGCA
66 TTGTAATATTGTAAATTTGCA
68350477 ATTTTTATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
95 35 0.45
96 16 0.21
97 10 0.13
100 17 0.22
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.53
Consensus pattern (97 bp):
TTTTTTGTATGAATATTGATAATATTATAGATTTGTATGAATATTGCAAATTTTTTGTATGAATA
TTGTAATATTGTAAATTTGCAGAATATTATAT
Found at i:68354744 original size:16 final size:15
Alignment explanation
Indices: 68354713--68354754 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
68354703 ACAAAATCAA
*
68354713 ATAAAATTTAATTAT
1 ATAAAAGTTAATTAT
68354728 ATAAAAGTTACATTAT
1 ATAAAAGTTA-ATTAT
*
68354744 ATAAAAATTAA
1 ATAAAAGTTAA
68354755 ATAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
ATAAAAGTTAATTAT
Found at i:68355168 original size:27 final size:26
Alignment explanation
Indices: 68355135--68355330 Score: 193
Period size: 27 Copynumber: 7.8 Consensus size: 26
68355125 ATATCCTCAC
*
68355135 ATTACAATATTCATGCAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
68355162 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
68355184 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
68355211 ATTACAACATTCATACAAAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
*
68355235 A-T--AATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTA-AAT
68355259 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
68355281 ATTGCAATATTCATACAAAACTATAATATT
1 ATTACAATATTCATACAAAA-T-TAA-A-T
68355311 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
68355331 AATTACTAAT
Statistics
Matches: 142, Mismatches: 8, Indels: 35
0.77 0.04 0.19
Matches are distributed among these distances:
21 14 0.10
22 30 0.21
23 12 0.08
24 9 0.06
25 3 0.02
26 8 0.06
27 46 0.32
28 1 0.01
30 19 0.13
ACGTcount: A:0.54, C:0.14, G:0.02, T:0.31
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATTAAAT
Found at i:68355203 original size:49 final size:49
Alignment explanation
Indices: 68355139--68355332 Score: 286
Period size: 49 Copynumber: 3.9 Consensus size: 49
68355129 CCTCACATTA
*
68355139 CAATATTCATGCAAAATTACAATATTACAATATTCATACAAAAAAATTG
1 CAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTG
* *
68355188 CAATATTCATACAAAATTATAATATTACAACATTCATACAAAAAAATAT-
1 CAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAAT-TG
*
68355237 -AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTG
1 CAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTG
68355285 CAATATTCATACAAAACTATA-ATATTATTACAATATTCATACAAAAAA
1 CAATATTCATACAAAA-T-TACA-A-TATTACAATATTCATACAAAAAA
68355333 TTACTAATCC
Statistics
Matches: 131, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
47 1 0.01
48 43 0.33
49 59 0.45
50 3 0.02
51 3 0.02
52 22 0.17
ACGTcount: A:0.54, C:0.14, G:0.02, T:0.30
Consensus pattern (49 bp):
CAATATTCATACAAAATTACAATATTACAATATTCATACAAAAAAATTG
Found at i:68355253 original size:97 final size:100
Alignment explanation
Indices: 68355140--68355332 Score: 329
Period size: 97 Copynumber: 2.0 Consensus size: 100
68355130 CTCACATTAC
* *
68355140 AATATTCATGCAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAA-
1 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
68355204 T-T-ATAATATTACAACATTCATACAAAAAAATAT
66 TATAATAATATTACAACATTCATACAAAAAAATAT
68355237 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
1 AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
* *
68355302 TATAATATTATTACAATATTCATACAAAAAA
66 TATAATAATATTACAACATTCATACAAAAAA
68355333 TTACTAATCC
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
97 62 0.70
98 1 0.01
99 1 0.01
100 25 0.28
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.31
Consensus pattern (100 bp):
AATATTCATACAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAC
TATAATAATATTACAACATTCATACAAAAAAATAT
Found at i:68355277 original size:19 final size:19
Alignment explanation
Indices: 68355156--68355213 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 19
68355146 CATGCAAAAT
*
68355156 TACAATATTACAATATTCA
1 TACAAAATTACAATATTCA
*
68355175 TACAAAAAAATTGCAATATTCA
1 TAC---AAAATTACAATATTCA
*
68355197 TACAAAATTATAATATT
1 TACAAAATTACAATATT
68355214 ACAACATTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 15 0.47
22 17 0.53
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (19 bp):
TACAAAATTACAATATTCA
Found at i:68355278 original size:19 final size:19
Alignment explanation
Indices: 68355253--68355310 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 19
68355243 CATACAAAAT
68355253 TACAAAATTACAATATTCA
1 TACAAAATTACAATATTCA
*
68355272 TACAAAAAAATTGCAATATTCA
1 TAC---AAAATTACAATATTCA
* *
68355294 TACAAAACTATAATATT
1 TACAAAATTACAATATT
68355311 ATTACAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.44
22 18 0.56
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (19 bp):
TACAAAATTACAATATTCA
Found at i:68355444 original size:22 final size:21
Alignment explanation
Indices: 68355369--68355455 Score: 99
Period size: 20 Copynumber: 4.2 Consensus size: 21
68355359 ATTTAATTAT
*
68355369 AAAATAATTACAATATTCATAC
1 AAAA-AATTAAAATATTCATAC
* *
68355391 --AACATTACAATATTCATA-
1 AAAAAATTAAAATATTCATAC
*
68355409 AAAAAATTATAATATTCATAC
1 AAAAAATTAAAATATTCATAC
68355430 AAAAAATTTAAAATATTCATAC
1 AAAAAA-TTAAAATATTCATAC
68355452 AAAA
1 AAAA
68355456 TTCTAATCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
19 15 0.26
20 18 0.32
21 6 0.11
22 18 0.32
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAAATTAAAATATTCATAC
Found at i:68376218 original size:39 final size:41
Alignment explanation
Indices: 68376159--68376240 Score: 123
Period size: 39 Copynumber: 2.0 Consensus size: 41
68376149 TTAAAAATAT
* * *
68376159 TTATATTAAAAAACATTACCATTAATATAATAAAT-TTTTA
1 TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
68376199 TTATA-TAAAAAACACTACCATAAACATAATAAATATTTTA
1 TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
68376239 TT
1 TT
68376241 GTATCAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 26 0.68
40 12 0.32
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (41 bp):
TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
Found at i:68379966 original size:38 final size:38
Alignment explanation
Indices: 68379923--68380000 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
68379913 TATGAGGATT
68379923 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
1 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
68379961 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
1 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
68379999 AA
1 AA
68380001 AGTTTCACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (38 bp):
AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
Found at i:68396033 original size:10 final size:10
Alignment explanation
Indices: 68396015--68396047 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
68396005 TTTTCAATTC
*
68396015 TCATACAATA
1 TCATCCAATA
68396025 TCATCCAATA
1 TCATCCAATA
68396035 TCATCCAATA
1 TCATCCAATA
68396045 TCA
1 TCA
68396048 ATCATAGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.30
Consensus pattern (10 bp):
TCATCCAATA
Found at i:68414722 original size:131 final size:132
Alignment explanation
Indices: 68414523--68414791 Score: 373
Period size: 131 Copynumber: 2.0 Consensus size: 132
68414513 TTAAAACATT
* * * *
68414523 TGAAAAGCTATCGATTCGAAAACGGGATAGTGTGAGCTTCTGAACAATCAGCCTGATATATTCCA
1 TGAAAAGCTACCGATTCGAAAACAGGA-AGTGTGAGCTTCTGAACAATCAGCCTAACATATTCCA
* *
68414588 CAAAGTGACAATGCACAAGGAAAAAGGAAACA-CTGGAGTAAGCACATTGAATGCTTAGTAAGTT
65 CAAAGTGACAATGCACAAGGAAAAAGGAAACATC-GAAGTAAGCACATTGAATGCTTAGTAAGTC
68414652 CATA
129 CATA
* * * *
68414656 TGAAAAGCTACCGATTCGAAAACAGG-AGTGTGAGCTTCTGAACGATCCGTCTAACATATTCTAC
1 TGAAAAGCTACCGATTCGAAAACAGGAAGTGTGAGCTTCTGAACAATCAGCCTAACATATTCCAC
* * * *
68414720 AAAGTGACAATGTACAAGGAAAAGGGAAACATCGAAGTAAGTATATTGAATGCTTAGTAAGTCCA
66 AAAGTGACAATGCACAAGGAAAAAGGAAACATCGAAGTAAGCACATTGAATGCTTAGTAAGTCCA
68414785 TA
131 TA
68414787 T-AAAA
1 TGAAAA
68414792 TTTACTTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
130 4 0.03
131 92 0.76
132 1 0.01
133 24 0.20
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (132 bp):
TGAAAAGCTACCGATTCGAAAACAGGAAGTGTGAGCTTCTGAACAATCAGCCTAACATATTCCAC
AAAGTGACAATGCACAAGGAAAAAGGAAACATCGAAGTAAGCACATTGAATGCTTAGTAAGTCCA
TA
Found at i:68416951 original size:39 final size:39
Alignment explanation
Indices: 68416902--68417011 Score: 114
Period size: 39 Copynumber: 2.8 Consensus size: 39
68416892 TCGTTACCTG
* * *
68416902 AGGATATGCAACAAAGGCTACATCTTATTATATTACCCA
1 AGGATCTGCAACAAAGGCTAGATCTCATTATATTACCCA
* * * * *
68416941 AGGGTCTGCAACGAATGCTAGATCTCGTTATATTACCTA
1 AGGATCTGCAACAAAGGCTAGATCTCATTATATTACCCA
* *
68416980 AGGATCTACAA-AAAGTGCTAGATCTCGTTATA
1 AGGATCTGCAACAAAG-GCTAGATCTCATTATA
68417012 ATCTATACAA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
38 2 0.03
39 56 0.97
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (39 bp):
AGGATCTGCAACAAAGGCTAGATCTCATTATATTACCCA
Found at i:68427723 original size:22 final size:22
Alignment explanation
Indices: 68427705--68427747 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
68427695 ATAAATATTT
*
68427705 TTTAAAAA-ATATAATAATAAA
1 TTTAAAAATATATAAAAATAAA
68427726 TTTAAAAATATATAAAAATAAA
1 TTTAAAAATATATAAAAATAAA
68427748 AATATTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAAATATATAAAAATAAA
Found at i:68427812 original size:21 final size:21
Alignment explanation
Indices: 68427788--68427828 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68427778 AAATTCAAAG
68427788 TAATATATAAAAATA-AATAAA
1 TAATATA-AAAAATATAATAAA
*
68427809 TAATTTAAAAAATATAATAA
1 TAATATAAAAAATATAATAA
68427829 TTTATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TAATATAAAAAATATAATAAA
Found at i:68427819 original size:20 final size:21
Alignment explanation
Indices: 68427796--68427838 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
68427786 AGTAATATAT
68427796 AAAAATA-AATAAATAATTTA
1 AAAAATATAATAAATAATTTA
* *
68427816 AAAAATATAATAATTTATTTA
1 AAAAATATAATAAATAATTTA
68427837 AA
1 AA
68427839 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAATATAATAAATAATTTA
Found at i:68428532 original size:22 final size:20
Alignment explanation
Indices: 68428496--68428553 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
68428486 GGGCCGGCCC
68428496 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
68428518 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
*
68428539 A-GTATTTTAAAAATA
1 ATTTATTTTAAAAATA
68428554 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 2 0.06
20 11 0.33
21 5 0.15
22 7 0.21
23 8 0.24
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:68428564 original size:30 final size:30
Alignment explanation
Indices: 68428521--68428609 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
68428511 ACCAAAAATT
* **
68428521 TATTTTAAAAATTAAAAAAGTATTTTAAAAA-
1 TATTTT-AAAATTAAAAAA-TAATAAAAAAAG
68428552 TATTTTAAAATTAAAAAATAATAAAAAAAG
1 TATTTTAAAATTAAAAAATAATAAAAAAAG
68428582 TATTTTAAAATTGAAAAAAT--TAAAAAAA
1 TATTTTAAAATT-AAAAAATAATAAAAAAA
68428610 TAAATATATT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
29 16 0.30
30 24 0.45
31 13 0.25
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (30 bp):
TATTTTAAAATTAAAAAATAATAAAAAAAG
Found at i:68431072 original size:21 final size:19
Alignment explanation
Indices: 68430974--68431115 Score: 90
Period size: 20 Copynumber: 7.7 Consensus size: 19
68430964 CAACTTTTTC
*
68430974 TTTTTTTGAAAATACGAAT
1 TTTTTTTGAAAACACGAAT
*
68430993 TTTTTTT-AAATACAAGAA-
1 TTTTTTTGAAA-ACACGAAT
*
68431011 ---TTTTAAAAACACGAA-
1 TTTTTTTGAAAACACGAAT
**
68431026 -AATTTTG-AAACACGAGAT
1 TTTTTTTGAAAACACGA-AT
68431044 TTTTTTTGAAAACACGAATT
1 TTTTTTTGAAAACACGAA-T
68431064 TTCTTTTTG-AAACACGAA-
1 TT-TTTTTGAAAACACGAAT
* *
68431082 ATTTTTT-AAAACACAAAAT
1 TTTTTTTGAAAACAC-GAAT
68431101 TTATTTTTGAAAACA
1 TT-TTTTTGAAAACA
68431116 TAAAAATTTT
Statistics
Matches: 99, Mismatches: 9, Indels: 28
0.73 0.07 0.21
Matches are distributed among these distances:
15 10 0.10
16 11 0.11
17 16 0.16
18 6 0.06
19 19 0.19
20 25 0.25
21 12 0.12
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (19 bp):
TTTTTTTGAAAACACGAAT
Found at i:68431100 original size:17 final size:17
Alignment explanation
Indices: 68431067--68431102 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
68431057 ACGAATTTTC
* *
68431067 TTTTTGAAACACGAAAT
1 TTTTTAAAACACAAAAT
68431084 TTTTTAAAACACAAAAT
1 TTTTTAAAACACAAAAT
68431101 TT
1 TT
68431103 ATTTTTGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (17 bp):
TTTTTAAAACACAAAAT
Found at i:68431108 original size:37 final size:40
Alignment explanation
Indices: 68431028--68431112 Score: 113
Period size: 37 Copynumber: 2.2 Consensus size: 40
68431018 AACACGAAAA
* * * *
68431028 TTTTGAAACACGAGATTTTTTTTGAAAACACGAATTTTCT
1 TTTTGAAACACGAGATATTTTTTGAAAACACAAAATTTAT
68431068 TTTTGAAACACGA-A-ATTTTTT-AAAACACAAAATTTAT
1 TTTTGAAACACGAGATATTTTTTGAAAACACAAAATTTAT
68431105 TTTTGAAA
1 TTTTGAAA
68431113 ACATAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
37 21 0.51
38 6 0.15
39 1 0.02
40 13 0.32
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (40 bp):
TTTTGAAACACGAGATATTTTTTGAAAACACAAAATTTAT
Found at i:68431121 original size:22 final size:21
Alignment explanation
Indices: 68431082--68431124 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68431072 GAAACACGAA
* *
68431082 ATTTTTTAAAACACAAAATTT
1 ATTTTTGAAAACAAAAAATTT
68431103 ATTTTTGAAAACATAAAAATTT
1 ATTTTTGAAAACA-AAAAATTT
68431125 TGATAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (21 bp):
ATTTTTGAAAACAAAAAATTT
Found at i:68431261 original size:56 final size:54
Alignment explanation
Indices: 68431186--68431299 Score: 156
Period size: 56 Copynumber: 2.1 Consensus size: 54
68431176 AAACGGTCAA
* * *
68431186 TTTTTTGAAAACACGAAAATTTTTGAAAGACGGGAATTTTTAAAAACACGGGAAAT
1 TTTTTTGAAAACACAAAAATTTTTGAAACACGGGAA-TTTTAAAAACAC-GAAAAT
* * *
68431242 TTTTTTGAAAATACAAAAATTTTTGAAACACTGGAATTTTGAAAACACGAAAAT
1 TTTTTTGAAAACACAAAAATTTTTGAAACACGGGAATTTTAAAAACACGAAAAT
68431296 TTTT
1 TTTT
68431300 GAAACATGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 9 0.17
55 11 0.21
56 32 0.62
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (54 bp):
TTTTTTGAAAACACAAAAATTTTTGAAACACGGGAATTTTAAAAACACGAAAAT
Found at i:68431279 original size:17 final size:18
Alignment explanation
Indices: 68431151--68431391 Score: 142
Period size: 18 Copynumber: 13.5 Consensus size: 18
68431141 ACGAGGATTT
68431151 TTTTTG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
68431168 TTTATT-AAAA-ACGGTCAAT
1 TTT-TTGAAAACAC-G-AAAA
68431187 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* **
68431205 TTTTTG-AAAGACGGGAA
1 TTTTTGAAAACACGAAAA
* *
68431222 TTTTTAAAAACACGGGAAATT
1 TTTTTGAAAACAC--GAAA-A
* *
68431243 TTTTTGAAAATACAAAAA
1 TTTTTGAAAACACGAAAA
*
68431261 TTTTTG-AAACACTG-GAA
1 TTTTTGAAAACAC-GAAAA
68431278 -TTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
68431295 TTTTTG-AAACATGAGAA
1 TTTTTGAAAACACGAAAA
*
68431312 TTTTTGAAAACACGAAAT
1 TTTTTGAAAACACGAAAA
* *
68431330 TTTTTTAAAATAC-AAGAA
1 TTTTTGAAAACACGAA-AA
* **
68431348 TTTTAG-AAACACGAATT
1 TTTTTGAAAACACGAAAA
* * *
68431365 TTTTTGGAAACGCGATAA
1 TTTTTGAAAACACGAAAA
*
68431383 TTCTTGAAA
1 TTTTTGAAA
68431392 CGATAAATTT
Statistics
Matches: 166, Mismatches: 40, Indels: 35
0.69 0.17 0.15
Matches are distributed among these distances:
16 6 0.04
17 60 0.36
18 72 0.43
19 13 0.08
20 4 0.02
21 11 0.07
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.33
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:68431324 original size:35 final size:35
Alignment explanation
Indices: 68431243--68431334 Score: 134
Period size: 34 Copynumber: 2.7 Consensus size: 35
68431233 ACGGGAAATT
* *
68431243 TTTTTGAAAATACAAAAATTTTTGAAACACTGGAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACTGGAA
68431278 -TTTTGAAAACACGAAAATTTTTGAAACA-TGAGAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACTG-GAA
*
68431312 TTTTTGAAAACACGAAATTTTTT
1 TTTTTGAAAACACGAAAATTTTT
68431335 TAAAATACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 2 0.04
34 29 0.56
35 21 0.40
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACTGGAA
Found at i:68431358 original size:35 final size:34
Alignment explanation
Indices: 68431244--68431369 Score: 107
Period size: 34 Copynumber: 3.7 Consensus size: 34
68431234 CGGGAAATTT
* * * * *
68431244 TTTTGAAAATACAAAAATTTTTGAAACACT-GGAA
1 TTTTGAAAACACGAAATTTTTTTAAACA-TAAGAA
* * *
68431278 TTTTGAAAACACGAAAATTTTTGAAACATGAGAA
1 TTTTGAAAACACGAAATTTTTTTAAACATAAGAA
68431312 TTTTTGAAAACACGAAATTTTTTTAAA-ATACAAGAA
1 -TTTTGAAAACACGAAATTTTTTTAAACAT--AAGAA
68431348 TTTT-AGAAACACG-AATTTTTTT
1 TTTTGA-AAACACGAAATTTTTTT
68431370 GGAAACGCGA
Statistics
Matches: 81, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
33 1 0.01
34 41 0.51
35 35 0.43
36 4 0.05
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (34 bp):
TTTTGAAAACACGAAATTTTTTTAAACATAAGAA
Found at i:68432217 original size:13 final size:13
Alignment explanation
Indices: 68432201--68432250 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
68432191 TTCCTTTCCC
*
68432201 TTTCTTCTTCCTT
1 TTTCTTCTTCTTT
68432214 TTTCTTCTTTCTTT
1 TTTCTTC-TTCTTT
68432228 TTTC-TC-TCTTT
1 TTTCTTCTTCTTT
*
68432239 TTTATTCTTCTT
1 TTTCTTCTTCTT
68432251 CGGCAACCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 8 0.25
12 2 0.06
13 13 0.41
14 9 0.28
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTCTTCTTCTTT
Found at i:68432227 original size:24 final size:25
Alignment explanation
Indices: 68432200--68432247 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
68432190 TTTCCTTTCC
*
68432200 CTTTCTTCT-TCCTTTTTCTTCTTT
1 CTTTCTTCTCTCCTTTTTATTCTTT
* *
68432224 CTTTTTTCTCTCTTTTTTATTCTT
1 CTTTCTTCTCTCCTTTTTATTCTT
68432248 CTTCGGCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (25 bp):
CTTTCTTCTCTCCTTTTTATTCTTT
Found at i:68432362 original size:16 final size:16
Alignment explanation
Indices: 68432330--68432374 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
68432320 TCTCCGCCCC
*
68432330 TTTTCCTTTTC-TTCT
1 TTTTCTTTTTCTTTCT
68432345 TTTTCTTTTTCTTTCT
1 TTTTCTTTTTCTTTCT
* *
68432361 TTGTCTTTCTCTTT
1 TTTTCTTTTTCTTT
68432375 TATTTTTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 10 0.38
16 16 0.62
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTTCTTTTTCTTTCT
Found at i:68432911 original size:29 final size:29
Alignment explanation
Indices: 68432781--68432912 Score: 70
Period size: 29 Copynumber: 4.5 Consensus size: 29
68432771 AAATATGAGG
* * *
68432781 CCAAAATGTAATTTTTG-GAAAGTTTAGGAA
1 CCAAAATGTAA--TTTGAAAAAATTTAGGGA
* *
68432811 CCCAAATGTAATTT-ATAAAAATTTAGGGG
1 CCAAAATGTAATTTGA-AAAAATTTAGGGA
** * * * * * *
68432840 TTAAGATGAAAATTCAAAAAAATTAGGGG
1 CCAAAATGTAATTTGAAAAAATTTAGGGA
* * *
68432869 TCAAAATATAAATTTGAAAAAGTTTAGGGA
1 CCAAAATGT-AATTTGAAAAAATTTAGGGA
68432899 CCAAAATGTAATTT
1 CCAAAATGTAATTT
68432913 TTTTTATATT
Statistics
Matches: 75, Mismatches: 23, Indels: 9
0.70 0.21 0.08
Matches are distributed among these distances:
28 3 0.04
29 39 0.52
30 33 0.44
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (29 bp):
CCAAAATGTAATTTGAAAAAATTTAGGGA
Found at i:68444537 original size:31 final size:31
Alignment explanation
Indices: 68444470--68444539 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
68444460 TTGAAATTTA
* *
68444470 AAATTCAAAAATTAAATGGACTAAAATTAAC
1 AAATTTAAAAATTAAATGGACGAAAATTAAC
* * *
68444501 CAATTTAAAAATTACAT-GACGAAAATTGATC
1 AAATTTAAAAATTAAATGGACGAAAATT-AAC
68444532 AAATTTAA
1 AAATTTAA
68444540 GTATATGGCC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (31 bp):
AAATTTAAAAATTAAATGGACGAAAATTAAC
Found at i:68444715 original size:21 final size:21
Alignment explanation
Indices: 68444691--68444731 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68444681 TCATACATTG
* *
68444691 CATAATTTTATTATAAAAAAT
1 CATAATGTAATTATAAAAAAT
68444712 CATAATGTAATTATAAAAAA
1 CATAATGTAATTATAAAAAA
68444732 AAATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (21 bp):
CATAATGTAATTATAAAAAAT
Found at i:68453346 original size:20 final size:21
Alignment explanation
Indices: 68453308--68453351 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
68453298 AAAAAATATA
* *
68453308 TAAAATTTAGTCTTTAATT-T
1 TAAAATTTAGGCTTCAATTGT
*
68453328 TAAAATTTAGGGTTCAATTGT
1 TAAAATTTAGGCTTCAATTGT
68453349 TAA
1 TAA
68453352 TACTGTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (21 bp):
TAAAATTTAGGCTTCAATTGT
Found at i:68454987 original size:33 final size:33
Alignment explanation
Indices: 68454927--68454993 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
68454917 CATTAAGTGT
* * *
68454927 ATTTTTTTGTTTTAATTGTAAATTGGTCCTTAA
1 ATTTTTTTGTTTTAATTGAAAAGTGGTCCCTAA
*
68454960 ATTTTGTTTGTTTTGATT-AAAAGTGGTCCCTAA
1 ATTTT-TTTGTTTTAATTGAAAAGTGGTCCCTAA
68454993 A
1 A
68454994 CTATCAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 18 0.62
34 11 0.38
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.52
Consensus pattern (33 bp):
ATTTTTTTGTTTTAATTGAAAAGTGGTCCCTAA
Found at i:68457796 original size:19 final size:19
Alignment explanation
Indices: 68457769--68457835 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
68457759 GAAATTAGAA
*
68457769 AGATCAAATTATAGTAAAG
1 AGATTAAATTATAGTAAAG
* * *
68457788 AGATTAAATTCGTA-AAAAA
1 AGATTAAATT-ATAGTAAAG
*
68457807 AAATTAAATTATAGTAAAG
1 AGATTAAATTATAGTAAAG
* *
68457826 GGATTCAATT
1 AGATTAAATT
68457836 CGTGAAAAAT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
18 2 0.06
19 31 0.89
20 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.13, T:0.30
Consensus pattern (19 bp):
AGATTAAATTATAGTAAAG
Found at i:68463410 original size:47 final size:48
Alignment explanation
Indices: 68463296--68463429 Score: 139
Period size: 47 Copynumber: 2.8 Consensus size: 48
68463286 AACAAGAGGA
* *
68463296 GAACATTCTTAATCAGTTGGCAACTAATTTATGAACATGAGGATAAGG
1 GAACATTATTAATCAGTTGGCAACTAATTTATGAACATGAAGATAAGG
* * * * *
68463344 GAACATCACTAATCGGTTGGCAACTAATTT-TGAGCTTGAA-AGT-AGG
1 GAACATTATTAATCAGTTGGCAACTAATTTATGAACATGAAGA-TAAGG
* * *
68463390 GAAACATTGTTAATCAGTTGGAAACTAATTTAGGAACATG
1 G-AACATTATTAATCAGTTGGCAACTAATTTATGAACATG
68463430 TGACATATCT
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
46 5 0.07
47 32 0.47
48 31 0.46
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (48 bp):
GAACATTATTAATCAGTTGGCAACTAATTTATGAACATGAAGATAAGG
Found at i:68484926 original size:15 final size:15
Alignment explanation
Indices: 68484907--68484942 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
68484897 ATTTTAATAG
68484907 AAAAATGAATATTGT
1 AAAAATGAATATTGT
* *
68484922 GAAAATGAATGTTGT
1 AAAAATGAATATTGT
68484937 AAAAAT
1 AAAAAT
68484943 TTTGGTTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (15 bp):
AAAAATGAATATTGT
Found at i:68486378 original size:33 final size:33
Alignment explanation
Indices: 68486331--68486397 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
68486321 CCTTCACTCC
**
68486331 TTAGCCTTTTCTTTTCCCTTTTCTTCAATTAGG
1 TTAGCCTTCACTTTTCCCTTTTCTTCAATTAGG
*
68486364 TTAGCCTTCACTTTTCCTTTTTCTTCAATTAGG
1 TTAGCCTTCACTTTTCCCTTTTCTTCAATTAGG
68486397 T
1 T
68486398 CCTCTCCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.13, C:0.24, G:0.09, T:0.54
Consensus pattern (33 bp):
TTAGCCTTCACTTTTCCCTTTTCTTCAATTAGG
Found at i:68488738 original size:22 final size:22
Alignment explanation
Indices: 68488677--68488740 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
68488667 TGCTGATCAA
* **
68488677 AGAGCATCAAAGTGCTAAGTAG
1 AGAGCACCAAAGTGCTAAACAG
*
68488699 AGAGCACCAAAGTACTAAACAG
1 AGAGCACCAAAGTGCTAAACAG
* *
68488721 AGAGCACCGAGGTGCTAAAC
1 AGAGCACCAAAGTGCTAAAC
68488741 CCGTACAAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.12
Consensus pattern (22 bp):
AGAGCACCAAAGTGCTAAACAG
Found at i:68490142 original size:25 final size:25
Alignment explanation
Indices: 68490114--68490165 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
68490104 AAAATTGGTA
68490114 AGACATTTTCCATTCT-TCTCTAAGC
1 AGACATTTTCCATTCTCT-TCTAAGC
68490139 AGACATTTTCCATTCTCTTCTAAGC
1 AGACATTTTCCATTCTCTTCTAAGC
68490164 AG
1 AG
68490166 CAGACACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (25 bp):
AGACATTTTCCATTCTCTTCTAAGC
Found at i:68492626 original size:14 final size:14
Alignment explanation
Indices: 68492607--68492634 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68492597 ATAATTTATT
68492607 AATATATATTAATA
1 AATATATATTAATA
68492621 AATATATATTAATA
1 AATATATATTAATA
68492635 TATGTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:68492790 original size:14 final size:14
Alignment explanation
Indices: 68492767--68492806 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
68492757 ACAGAAAAGT
*
68492767 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
68492781 AAATCATTTTACGG
1 AAAACATTTTACAG
68492795 AAAACATTTTAC
1 AAAACATTTTAC
68492807 TGCCAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:68492798 original size:34 final size:35
Alignment explanation
Indices: 68492732--68492798 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
68492722 CAAACACCAG
* *
68492732 AAAATATTTTCCAGTAAATTATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
68492767 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
68492799 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:68500426 original size:275 final size:269
Alignment explanation
Indices: 68499793--68500568 Score: 837
Period size: 275 Copynumber: 2.8 Consensus size: 269
68499783 TTCATGTGAG
* * *
68499793 CCATCAACTCATTC-TCACACTAGTAGTAAACATTATTTTCAGCTATCATTTTCGAAAC-GCTCG
1 CCATCAACTCATTCACCATAC-AGTAGTTAACATTATTTTCAGCTATCATTTTCGAAACAGCTC-
* * * * ** *
68499856 GA-TCCCAAACCAAACCACTTCTTGCTGACATCGTATCCTTTATTCCCCATCC-CAATAACTAAA
64 CACCCCCAAACCAAACCACTTCTAGCTGATATTATATCC-TTATTTCCCATCCTCAATAACT-AA
* * * *
68499919 AC-TAAATCTTACTTTTCCACAAACAATTACTTTTGATTGCCAAAAGGAAGTCCTAAAATAAACC
127 ACTTAAATCTTCCTTTTCCACAAACAATCACTTTTGATTGCCAAAA-TAAGTCTTAAAATAAA-C
* * * * *
68499983 CCATTCGAATACCCCAATAATACAATTATCAGTCATTACCACTCTTTCAACAAGTCACATCTTCC
190 CCATTCAAACACCCCAATAATACAATTATCAGTCATTACCACTCTTCCAACAAGTCACATCTACA
68500048 ATGTGTTCTATGTAA
255 ATGTGTTCTATGTAA
* * * * *
68500063 -GATCAATTCATTCACCATACCAGTAGTTAACATTATTGTCGGCTATCATTTTCGAAACAACTCC
1 CCATCAACTCATTCACCATA-CAGTAGTTAACATTATTTTCAGCTATCATTTTCGAAACAGCTCC
* *
68500127 ACCCCCAAACCAAACCATTTCTAGCTGATATTATATCCTTACTTTCCCATCCTCAATAACTGAAC
65 ACCCCCAAACCAAACCACTTCTAGCTGATATTATATCCTTA-TTTCCCATCCTCAATAACTAAAC
* * * *
68500192 TTAAATCTTCCTTTTCCACAGACAATGACTTTTGGTTGCCAAATTATAGTCTTAAAATAAACCCA
129 TTAAATCTTCCTTTTCCACAAACAATCACTTTTGATTGCCAAAATA-AGTCTTAAAATAAACCCA
* * * *
68500257 TTCAAACGCCCCAATAATAGAATTATCACAGTCATTATCACTCTTCCAACAAG-CTGCATCTACA
193 TTCAAACACCCCAATAATACAATTAT--CAGTCATTACCACTCTTCCAACAAGTC-ACATCTACA
*
68500321 ATGTGTTCTTTGTAA
255 ATGTGTTCTATGTAA
* * *
68500336 TCCATCAACTCATTCACCATATCAGTAGTTAACTTTCTTTTCAGCTATCATTTTTGAAACAGCTC
1 -CCATCAACTCATTCACCATA-CAGTAGTTAACATTATTTTCAGCTATCATTTTCGAAACAGCTC
* *
68500401 CACCCCCAAACCTAACCACTTCTAGCTGATATTATATGATTATATCCTTATTTTTCCATCCTCAA
64 CACCCCCAAACCAAACCACTTCTAGCTG-------AT-ATTATATCCTTA-TTTCCCATCCTCAA
* * * * *
68500466 TAACTAAAATTAGATCTTCCCTTTCCACAAACAACCACTTTTGATTGCCAAAATACAGTTCTAAA
120 TAACTAAACTTAAATCTTCCTTTTCCACAAACAATCACTTTTGATTGCCAAAATA-AG-TCTTAA
* * * *
68500531 AATAAACCCATTCAAAAACCCTAATGATACAATCATCA
183 AATAAACCCATTCAAACACCCCAATAATACAATTATCA
68500569 CAATCATTAG
Statistics
Matches: 420, Mismatches: 64, Indels: 32
0.81 0.12 0.06
Matches are distributed among these distances:
269 11 0.03
270 41 0.10
271 73 0.17
272 60 0.14
273 43 0.10
275 80 0.19
282 4 0.01
283 73 0.17
284 35 0.08
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (269 bp):
CCATCAACTCATTCACCATACAGTAGTTAACATTATTTTCAGCTATCATTTTCGAAACAGCTCCA
CCCCCAAACCAAACCACTTCTAGCTGATATTATATCCTTATTTCCCATCCTCAATAACTAAACTT
AAATCTTCCTTTTCCACAAACAATCACTTTTGATTGCCAAAATAAGTCTTAAAATAAACCCATTC
AAACACCCCAATAATACAATTATCAGTCATTACCACTCTTCCAACAAGTCACATCTACAATGTGT
TCTATGTAA
Found at i:68502232 original size:32 final size:29
Alignment explanation
Indices: 68502196--68502260 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
68502186 TTAATAAATG
*
68502196 AATATACATAATTATTAAATATTAAATTAAAA
1 AATATAAAT-ATTATTAAA-A-TAAATTAAAA
* *
68502228 AATATAAATATTTTTAAAATAAATTTAAA
1 AATATAAATATTATTAAAATAAATTAAAA
68502257 AATA
1 AATA
68502261 ATATGAGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 13 0.43
30 1 0.03
31 8 0.27
32 8 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
AATATAAATATTATTAAAATAAATTAAAA
Found at i:68502264 original size:32 final size:34
Alignment explanation
Indices: 68502178--68502264 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 34
68502168 TTATTTATTT
* *
68502178 ATATAATTTTAATAAATGAATATACATAATTATTAA
1 ATATAAATTTAA-AAAT-AATATAAATAATTATTAA
*
68502214 ATATTAAA-TT-AAAA-AATATAAAT-ATTTTTAA
1 ATA-TAAATTTAAAAATAATATAAATAATTATTAA
68502245 A-ATAAATTTAAAAATAATAT
1 ATATAAATTTAAAAATAATAT
68502265 GAGTGGACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
29 4 0.09
30 3 0.07
31 12 0.27
32 13 0.30
34 3 0.07
35 1 0.02
36 5 0.11
37 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (34 bp):
ATATAAATTTAAAAATAATATAAATAATTATTAA
Found at i:68510929 original size:13 final size:13
Alignment explanation
Indices: 68510913--68510937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68510903 ATGTATATAA
68510913 TATATATATAAAC
1 TATATATATAAAC
68510926 TATATATATAAA
1 TATATATATAAA
68510938 AAAATATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:68511059 original size:3 final size:3
Alignment explanation
Indices: 68511044--68511101 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
68511034 GTATGCAAGT
*
68511044 ATA ATA A-A A-A ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
68511087 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
68511102 ACTAAAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 7 0.15
3 39 0.83
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:68512596 original size:132 final size:132
Alignment explanation
Indices: 68512359--68513790 Score: 2459
Period size: 132 Copynumber: 10.8 Consensus size: 132
68512349 CACCATCGTC
* * * *
68512359 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
*
68512424 TTCCTATCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68512489 AA
131 AA
* * *
68512491 GATCTGCTTTTTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
68512556 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
*
68512621 CA
131 AA
68512623 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* *
68512688 TTCCAATCATTATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68512753 AA
131 AA
* * *
68512755 GATCTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* *
68512820 TTCCAATCATTATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68512885 AA
131 AA
68512887 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
*
68512952 TTCCTATCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513017 AA
131 AA
* * * *
68513019 GATCTGCTTTCTGTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* *
68513084 TTCCAATCATTATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513149 AA
131 AA
68513151 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
68513216 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513281 AA
131 AA
* * * *
68513283 GATCTGCTTTCTGTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* *
68513348 TTCCAATCATTATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513413 AA
131 AA
*
68513415 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* * *
68513480 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513545 AA
131 AA
* *
68513547 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAT
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* * *
68513612 TTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
68513677 AA
131 AA
* * *
68513679 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAT
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
* * * *
68513744 TTCCTACCAATATAAGAAGATAGGATCAGCTATCTTCGATCTACTTC
66 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC
68513791 TTGCCCCGGG
Statistics
Matches: 1244, Mismatches: 56, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 1244 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:68514004 original size:134 final size:134
Alignment explanation
Indices: 68513798--68514269 Score: 809
Period size: 134 Copynumber: 3.5 Consensus size: 134
68513788 TTCTTGCCCC
** * ** * * *
68513798 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTC
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
* * * * * *
68513863 AACCTGCTTTGCTGCCAAATACAAGAAGGTAAGATCTGCAATCTTCAATCTATTCCATTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
68513928 TACA
131 TACA
*
68513932 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTTAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
68513997 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
68514062 TACA
131 TACA
68514066 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
68514131 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
68514196 TACA
131 TACA
68514200 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
68514265 GATCT
66 GATCT
68514270 TCAATCTATT
Statistics
Matches: 322, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 322 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (134 bp):
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
TACA
Found at i:68514058 original size:46 final size:46
Alignment explanation
Indices: 68514008--68514201 Score: 148
Period size: 46 Copynumber: 4.3 Consensus size: 46
68513998 ATCTGCTTCG
68514008 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* ** * * ** * *
68514054 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
*** * * * * ** * *
68514099 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
68514142 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
68514188 CTGCCAAATACAGG
1 CTGCCAAATACAGG
68514202 GAGATAGAGT
Statistics
Matches: 105, Mismatches: 35, Indels: 16
0.67 0.22 0.10
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 11 0.10
44 1 0.01
45 19 0.18
46 57 0.54
47 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:68514235 original size:45 final size:45
Alignment explanation
Indices: 68514173--68514330 Score: 115
Period size: 45 Copynumber: 3.4 Consensus size: 45
68514163 GATCTGCAAT
*
68514173 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
* *** * * * *
68514218 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGT-T---ATC---G-G
* *
68514268 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
*
68514313 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
68514331 TAGTCACAGG
Statistics
Matches: 81, Mismatches: 21, Indels: 22
0.65 0.17 0.18
Matches are distributed among these distances:
42 11 0.14
43 2 0.02
45 32 0.40
46 3 0.04
49 4 0.05
50 16 0.20
52 2 0.02
53 11 0.14
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
Found at i:68514276 original size:95 final size:96
Alignment explanation
Indices: 68514171--68514360 Score: 346
Period size: 95 Copynumber: 2.0 Consensus size: 96
68514161 AAGATCTGCA
*
68514171 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTG
*
68514236 TGGT-CAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTACAGGGAGGTAAAATCTGCCATCTTTG
68514266 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTG
68514331 TAGTCACAGGGAGGTAAAATCTGCCATCTT
66 TAGT-ACAGGGAGGTAAAATCTGCCATCTT
68514361 CAATCTGCTT
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
95 67 0.74
97 24 0.26
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (96 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTG
TAGTACAGGGAGGTAAAATCTGCCATCTTTG
Found at i:68514480 original size:42 final size:42
Alignment explanation
Indices: 68514433--68514566 Score: 96
Period size: 42 Copynumber: 3.1 Consensus size: 42
68514423 AAACTAGAGT
68514433 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
* * * * * * * * *
68514475 GGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGAGT
1 GGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA-A
68514519 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
*
68514561 AGCAAG
1 GGCAAG
68514567 ATCTGATAAC
Statistics
Matches: 63, Mismatches: 19, Indels: 20
0.62 0.19 0.20
Matches are distributed among these distances:
41 12 0.19
42 18 0.29
43 8 0.13
44 13 0.21
45 12 0.19
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
Found at i:68514503 original size:86 final size:86
Alignment explanation
Indices: 68514357--68514620 Score: 411
Period size: 86 Copynumber: 3.1 Consensus size: 86
68514347 AAATCTGCCA
* * *
68514357 TCTTCAATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTA
*
68514422 CAAACTAGAGTGGCAAGGTTTG
65 CAAACGAGAGTGGCAAGGTTTG
* *
68514444 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
68514509 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGTGGCAAGGTTTG
* *
68514530 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAAGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
* * * *
68514595 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGTGGCAAGGTTTG
68514616 TCTTC
1 TCTTC
68514621 AATTTTTACT
Statistics
Matches: 163, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
86 144 0.88
87 19 0.12
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
AAACGAGAGTGGCAAGGTTTG
Found at i:68521133 original size:13 final size:13
Alignment explanation
Indices: 68521117--68521141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68521107 ATGTATATAA
68521117 TATATATATAAAC
1 TATATATATAAAC
68521130 TATATATATAAA
1 TATATATATAAA
68521142 AAAAATATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:68521264 original size:3 final size:3
Alignment explanation
Indices: 68521249--68521306 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
68521239 GTATGCAAGT
*
68521249 ATA ATA A-A A-A ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
68521292 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
68521307 ACTAAAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 7 0.15
3 39 0.83
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:68524097 original size:10 final size:10
Alignment explanation
Indices: 68524082--68524133 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
68524072 CATTAATTTG
68524082 TATTTTAAAT
1 TATTTTAAAT
*
68524092 TATTTTTTATAT
1 TA--TTTTAAAT
68524104 GTATTTTAAAT
1 -TATTTTAAAT
*
68524115 TATTTT-TAT
1 TATTTTAAAT
68524124 TATTTTAAAT
1 TATTTTAAAT
68524134 ATAAAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 8 0.24
10 10 0.29
11 7 0.21
12 7 0.21
13 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TATTTTAAAT
Found at i:68524159 original size:20 final size:21
Alignment explanation
Indices: 68524126--68524166 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
68524116 ATTTTTATTA
*
68524126 TTTTAAATATAAAATATTTAT
1 TTTTAAATATAAAATAGTTAT
*
68524147 TTTTACATA-AAAATAGTTAT
1 TTTTAAATATAAAATAGTTAT
68524167 AAAAACTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTTAAATATAAAATAGTTAT
Found at i:68527117 original size:6 final size:6
Alignment explanation
Indices: 68527101--68527130 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
68527091 GGGCCTTAAG
68527101 AGAAAA A-AAAA AGAAAA AGAAAA AGAAAA A
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
68527131 AAGGTGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:68527118 original size:12 final size:12
Alignment explanation
Indices: 68527098--68527132 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
68527088 AAGGGGCCTT
68527098 AAGAGAAAAAAAA
1 AAGA-AAAAAAAA
*
68527111 AAGAAAAAGAAA
1 AAGAAAAAAAAA
68527123 AAGAAAAAAA
1 AAGAAAAAAA
68527133 GGTGTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:68533249 original size:26 final size:26
Alignment explanation
Indices: 68533213--68533264 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
68533203 ATAGATTATG
68533213 GTGCATTGTAATGAGCTAGCGGCACT
1 GTGCATTGTAATGAGCTAGCGGCACT
68533239 GTGCATTGTAATGAGCTAGCGGCACT
1 GTGCATTGTAATGAGCTAGCGGCACT
68533265 CTCTTAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
GTGCATTGTAATGAGCTAGCGGCACT
Found at i:68538615 original size:16 final size:17
Alignment explanation
Indices: 68538594--68538626 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
68538584 GACTCGAGTA
68538594 ATTTTAAATTT-AAATT
1 ATTTTAAATTTGAAATT
*
68538610 ATTTTAAGTTTGAAATT
1 ATTTTAAATTTGAAATT
68538627 TAAGTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTTTAAATTTGAAATT
Found at i:68540746 original size:18 final size:17
Alignment explanation
Indices: 68540699--68540748 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
68540689 TAAAAATAAC
*
68540699 TATAATAATAGTAAAGA
1 TATAATAATAATAAAGA
*
68540716 TGATAATAGTAATAATAGA
1 T-ATAATAATAATAA-AGA
68540735 TATAATAATAATAA
1 TATAATAATAATAA
68540749 CTAAATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 1 0.04
18 23 0.82
19 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (17 bp):
TATAATAATAATAAAGA
Found at i:68546325 original size:88 final size:87
Alignment explanation
Indices: 68546227--68547788 Score: 792
Period size: 87 Copynumber: 17.8 Consensus size: 87
68546217 CTATTCTACT
* * * *
68546227 GCCAGTACATGAAGACAAGATTTGCTTTCTTGGATCCACTCTCTACCAATATAGGGAGACAGGAC
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACT-TCTACCAATATAGGAAGACAGGAC
*
68546292 CTGTTATCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * *
68546315 GCCAATACATGAAGACAAGATCTGC-ATCTTGGATCCACTTCCTATCAATATAGGAAGACAGGAC
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGGAC
* *
68546379 CAGCCATCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * * * * * *
68546402 GCCAATACGTGAAGATAAGATCTTCTTTCTTTGATCTACTTCGCCACCAATAT-GGAAAGACAAG
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT--CTACCAATATAGG-AAGACAGG
* * *
68546466 ATCTGC-ATCTTGGATCCACTTC-C
63 ACCTGCTATCTTCGATCTACTTCAC
** * * * * * * * * * * *
68546489 TATCAATATAGGAAGATAGGACCTGCTATCTTCAATCTACTTC-ACGCCAATACATGAAGACAAG
1 -GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTA--CCAATATAGGAAGACAGG
* * * *
68546553 ATCTGCTTTCTGCGATCTACTTCGCC
63 ACCTGCTATCTTCGATCTACTTC-AC
* * *** * * *
68546579 ACCAGTATGGGAAGACAAGATCTGC-GTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGAC
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGGAC
68546643 CTGCTATCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * * * *
68546666 GCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACCA-G
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT--CTACCAATATAGGAAGA-CAGG
* * ** *
68546730 ATCTGC-GTCGCCGATCCACTTC-C
63 ACCTGCTATCTTCGATCTACTTCAC
* * * * * * * * * * *
68546753 TACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 -GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTA--CCAATATAGGAAGACAGG
* * *
68546817 ATCTGC-ATCTTGGATCCACTTC-C
63 ACCTGCTATCTTCGATCTACTTCAC
** * * *** * * * * * *
68546840 TATCAATATAGGAAGATTGGACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 -GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTA--CCAATATAGGAAGACAGG
* * * * *
68546904 ATCTGTTTTCTGCGATCTACTTCGCC
63 ACCTGCTATCTTCGATCTACTTC-AC
* *** * * * * *
68546930 ACCAATATGGGAAGACCAGATCTGC-ATCGTCGATCCACTTCCTACCAATATAGGAAGATAAGAC
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGGAC
68546994 CTGCTATCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * * * *
68547017 GCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT-GGAAGACAAGA
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT--CTACCAATATAGGAAGACAGGA
* * * *
68547081 TCTGC-ATCTTTGATCCAGTTC-C
64 CCTGCTATCTTCGATCTACTTCAC
* * * ** * * * * * *
68547103 TACCAATATAGGAAGGTAGGACCTG-TTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAA
1 -GCCAATACATGAAGACAAGATCTGCTT-TCTTCGATCCACTTCTA--CCAATATAGGAAGACAG
* * *
68547166 GATCTGC-ATCTTGGATCCACTTC-C
62 GACCTGCTATCTTCGATCTACTTCAC
** * * * * * ** * * * *
68547190 TATCAATATAGGAAGACAGGACCAGCCATCTTCGATCTACTTC-ACGCCAATA-CGTGAAGATAA
1 -GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTA--CCAATATAG-GAAGACAG
* * * * *
68547253 GATCTTCTTTCTTTGATCTACTTCGCC
62 GACCTGCTATCTTCGATCTACTTC-AC
* * * * *
68547280 ACCAAT--ATGGAAAGACAAGATCTGC-ATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
1 GCCAATACAT-G-AAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGG
*
68547342 ACCTGCTATCTTCAATCTACTTCAC
63 ACCTGCTATCTTCGATCTACTTCAC
* * * * * * *
68547367 GCCAATACATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAGTATGGGAAGACAAGA
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT--CTACCAATATAGGAAGACAGGA
* * * *
68547432 TCTGC-GTCGTCGATCCACTTC-C
64 CCTGCTATCTTCGATCTACTTCAC
* * * * * * * * * * *
68547454 TACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAG
1 -GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTA--CCAATATAGGAAGACAGG
* * * * *
68547518 ATCTGTTTTCTGCGATCTACTTCGCC
63 ACCTGCTATCTTCGATCTACTTC-AC
* *** * * * *
68547544 ACCAATATGGGAAGACCAGATCTGC-GTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGAC
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGGAC
68547608 CTGCTATCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * * * *
68547631 GCCAATACATGAAGACAAGATCTGC-ATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGAT
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT-CTACCAATATAGGAAGACAGGAC
*
68547695 CTGCTACCTTCGATCTACTTCAC
65 CTGCTATCTTCGATCTACTTCAC
* * * * *
68547718 GCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGA
1 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTT--CTACCAATATAGGAAGACAGGA
*
68547783 TCTGCT
64 CCTGCT
68547789 TTAATGATTT
Statistics
Matches: 1171, Mismatches: 247, Indels: 111
0.77 0.16 0.07
Matches are distributed among these distances:
84 1 0.00
85 4 0.00
86 15 0.01
87 510 0.44
88 459 0.39
89 173 0.15
90 9 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (87 bp):
GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCTACCAATATAGGAAGACAGGACC
TGCTATCTTCGATCTACTTCAC
Found at i:68546968 original size:219 final size:219
Alignment explanation
Indices: 68546589--68547257 Score: 898
Period size: 219 Copynumber: 3.1 Consensus size: 219
68546579 ACCAGTATGG
* * *
68546589 GAAGACAAGATCTGCGTCGTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTC
68546654 GATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
* *
68546719 GGGAAGACCAGATCTGCGTCGCCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCT
131 GGGAAGACCAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCT
68546784 TCGATCTACTTCACGCCAATACAT
196 TCGATCTACTTCACGCCAATACAT
* *
68546808 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATTGGACCTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTC
68546873 GATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
*
68546938 GGGAAGACCAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAAGACCTGCTATCT
131 GGGAAGACCAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCT
68547003 TCGATCTACTTCACGCCAATACAT
196 TCGATCTACTTCACGCCAATACAT
* * * * * * *
68547027 GAAGACAAGATCTG-TTTTCTGCGATCTACTTCGCCACCAATAT-GGAAGACAAGATCTGC-ATC
1 GAAGACAAGATCTGCATCT-TG-GATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATC
* * * * * * ** * * * * * *
68547089 TTTGATCCAGTTC-CTACCAATATAGGAAGGTAGGACCTGTTATCTTCGATCTACTTC-ACGCCA
63 TTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCA
*** * * * * * * *
68547152 ATACATGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGACAGGACCAGCC
127 ATATGGGAAGACCAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCT
*
68547217 ATCTTCGATCTACTTCACGCCAATACGT
192 ATCTTCGATCTACTTCACGCCAATACAT
*
68547245 GAAGATAAGATCT
1 GAAGACAAGATCT
68547258 TCTTTCTTTG
Statistics
Matches: 402, Mismatches: 44, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
218 100 0.25
219 273 0.68
220 21 0.05
221 8 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (219 bp):
GAAGACAAGATCTGCATCTTGGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATAT
GGGAAGACCAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCT
TCGATCTACTTCACGCCAATACAT
Done.