Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 217 of 222
Found at i:68547768 original size:132 final size:132
Alignment explanation
Indices: 68546237--68547787 Score: 1100
Period size: 132 Copynumber: 11.8 Consensus size: 132
68546227 GCCAGTACAT
* * * * * * * * * * *
68546237 GAAGACAAGATTTGCTTTCTTGGATCCACTCTC-TACCAATATAGGGAGACAGGACCTGTTATCT
1 GAAGACAAGATCTGCTATCTTCGATCTACT-TCACACCAATACATGAAGACAAGATCTGCTATCT
* * * * * * *
68546301 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCATCTTGGATCCACTTC-CTATCAATA
65 TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCACTACCAATA
68546365 TAG
130 TAG
* * * * * * * * *
68546368 GAAGACAGGACCAGCCATCTTCGATCTACTTCACGCCAATACGTGAAGATAAGATCTTCTTTCTT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
* * * *
68546433 TGATCTACTTCGCCACCAATAT-GGAAAGACAAGATCTGCATCTTGGATCCACTTC-CTATCAAT
66 CGATCTACTTC-CCACCAATATAGG-AAGACAAGATCTGCATCTTCGATCTACTTCACTACCAAT
68546496 ATAG
129 ATAG
* * * * * * *
68546500 GAAGATAGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
* * * * *
68546565 CGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCGTCGTCGATCCACTTC-CTACCAATA
66 CGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCACTACCAATA
68546629 TAG
130 TAG
* * * * * * *
68546632 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
* * * ** *
68546697 CGATCTACTTCGCCACCAATATGGGAAGACCAGATCTGCGTCGCCGATCCACTTC-CTACCAATA
66 CGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCACTACCAATA
68546761 TAG
130 TAG
* * * *
68546764 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATCTT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
* * * * *** * *
68546828 GGATCCACTTCCTATCAATATAGGAAGATTGGACCTGCTATCTTCGATCTACTTCAC-GCCAATA
66 CGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACTACCAATA
* *
68546892 CAT
130 TAG
* * * * *** * *
68546895 GAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACCAGATCTGC-ATCG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATACATGAAGACAAGATCTGCTATCT
* * * * *
68546959 TCGATCCACTTCCTACCAATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCAC-GCCAAT
65 TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACTACCAAT
* *
68547023 ACAT
129 ATAG
* * * *
68547027 GAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAAT--ATGGAAGACAAGATCTGC-ATC
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATACAT-GAAGACAAGATCTGCTATC
* * * * ** * * * *
68547089 TTTGATCCAGTTCCTACCAATATAGGAAGGTAGGACCTGTTATCTTCGATCTACTTCAC-GCCAA
64 TTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTG-CATCTTCGATCTACTTCACTACCAA
* *
68547153 TACAT
128 TATAG
* * * * * * * * *
68547158 GAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGACAGGACCAGCCATCT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTATCT
* * * * * * * * *
68547221 TCGATCTACTTCACGCCAATA-CGTGAAGATAAGATCTTCTTTCTTTGATCTACTTCGCCACCAA
65 TCGATCTACTTCCCACCAATATAG-GAAGACAAGATCTGC-ATCTTCGATCTACTTCACTACCAA
68547285 TAT-G
128 TATAG
* * * * * * * *
68547289 GAAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTATC
1 G-AAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTATC
* * * * * * * * * * *
68547352 TTCAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCAATCTACTTCGCCACCAG
64 TTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACTACCAA
*
68547417 TATGG
128 TATAG
* * * * * * * *
68547422 GAAGACAAGATCTGC-GTCGTCGATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTATCT
* * * * ** * * *
68547485 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTTTCTGCGATCTACTTCGCCACCAAT
65 TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTG-CATCTTCGATCTACTTCACTACCAAT
*
68547550 ATGG
129 ATAG
* * * * * * * * *
68547554 GAAGACCAGATCTGC-GTCGTCGATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTATCT
* * * * * * *
68547617 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCATCTTGGATCCACTTC-CTATCAATA
65 TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCACTACCAATA
68547681 TAG
130 TAG
* * * * * *
68547684 GAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
*
68547749 CGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC
66 CGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGC
68547788 TTTAATGATT
Statistics
Matches: 1231, Mismatches: 166, Indels: 45
0.85 0.12 0.03
Matches are distributed among these distances:
128 1 0.00
129 5 0.00
130 68 0.06
131 307 0.25
132 846 0.69
133 4 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (132 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTT
CGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCACTACCAATAT
AG
Found at i:68565632 original size:27 final size:27
Alignment explanation
Indices: 68565580--68565632 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
68565570 ATTTAGGTCT
* * *
68565580 ATTTATGATTTTAGTCCCTCTATTAAA
1 ATTTAAGATTTTAATCCCTCCATTAAA
68565607 ATTTAAGA-TTTAATCCCTCCACTTAA
1 ATTTAAGATTTTAATCCCTCCA-TTAA
68565633 TTTGATCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (27 bp):
ATTTAAGATTTTAATCCCTCCATTAAA
Found at i:68571225 original size:12 final size:12
Alignment explanation
Indices: 68571208--68571237 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
68571198 TATTTTATAT
68571208 AAATTCTTTAAA
1 AAATTCTTTAAA
68571220 AAATTCTTTAAA
1 AAATTCTTTAAA
68571232 AAATTC
1 AAATTC
68571238 ATGTCATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATTCTTTAAA
Found at i:68574217 original size:46 final size:46
Alignment explanation
Indices: 68574150--68574358 Score: 305
Period size: 46 Copynumber: 4.6 Consensus size: 46
68574140 TTTGAGTACT
* * * *
68574150 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACATTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * *
68574196 TCTGATCAAGTGACAAAGTGATAAGTGTTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
68574242 TCTGATCAAGTGACAAAGTGATAAGTGATAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
68574288 TCTAATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
68574334 TTTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
68574359 ATAATACGTA
Statistics
Matches: 150, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
44 12 0.08
45 5 0.03
46 133 0.89
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:68576036 original size:17 final size:17
Alignment explanation
Indices: 68576014--68576047 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68576004 CGTAAACCAA
*
68576014 ACCATGTCAGATTAAAG
1 ACCATGTCAAATTAAAG
68576031 ACCATGTCAAATTAAAG
1 ACCATGTCAAATTAAAG
68576048 TATAGATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.24
Consensus pattern (17 bp):
ACCATGTCAAATTAAAG
Found at i:68582472 original size:21 final size:21
Alignment explanation
Indices: 68582454--68582497 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
68582444 AAAATTAATT
68582454 AATTTA-TTTTTATTTTTAAG
1 AATTTATTTTTTATTTTTAAG
68582474 AATTTATTTTTTA-TTTTAA-
1 AATTTATTTTTTATTTTTAAG
68582493 AATTT
1 AATTT
68582498 TAAAATGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.22
20 12 0.52
21 6 0.26
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
AATTTATTTTTTATTTTTAAG
Found at i:68582675 original size:23 final size:21
Alignment explanation
Indices: 68582634--68582681 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
68582624 TTTAAATTTA
68582634 AAAATTTAAAAATAAAATAACT
1 AAAATTTAAAAATAAAATAA-T
* *
68582656 AAAATTTAAAAGTATTAATAAT
1 AAAATTTAAAAATA-AAATAAT
68582678 AAAA
1 AAAA
68582682 GGATTTAGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATTTAAAAATAAAATAAT
Found at i:68583825 original size:21 final size:21
Alignment explanation
Indices: 68583785--68583824 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68583775 AATTAAATTA
*
68583785 TACAAATAGAAACTTTAAAAT
1 TACAAAAAGAAACTTTAAAAT
68583806 TACAAAAAGAAA-TTTAAAA
1 TACAAAAAGAAACTTTAAAA
68583825 AATATATCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (21 bp):
TACAAAAAGAAACTTTAAAAT
Found at i:68587244 original size:21 final size:20
Alignment explanation
Indices: 68587206--68587247 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
68587196 AATAATGTTC
68587206 AAAAAATATATTACTAATAT
1 AAAAAATATATTACTAATAT
68587226 AAAAAATACTATATA-TAATAT
1 AAAAAATA-TAT-TACTAATAT
68587247 A
1 A
68587248 TATTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 10 0.50
22 2 0.10
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAATATATTACTAATAT
Found at i:68588867 original size:17 final size:17
Alignment explanation
Indices: 68588826--68588867 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
68588816 TTATATGGTG
68588826 TTTTTT-TAAAATACTT
1 TTTTTTATAAAATACTT
*
68588842 TTTTATATAAAATA-TT
1 TTTTTTATAAAATACTT
68588858 TATTTTTATA
1 T-TTTTTATA
68588868 TCATAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTTTATAAAATACTT
Found at i:68590431 original size:24 final size:24
Alignment explanation
Indices: 68590382--68590432 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
68590372 ATTTGATATT
**
68590382 TATTAGAATAAGGAGTTTCACTCC
1 TATTAGAATAAGGAGTTTCAAGCC
*
68590406 TATTAGAATAAGG-TTTTACAAGCC
1 TATTAGAATAAGGAGTTT-CAAGCC
68590430 TAT
1 TAT
68590433 AAATAGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (24 bp):
TATTAGAATAAGGAGTTTCAAGCC
Found at i:68590896 original size:33 final size:34
Alignment explanation
Indices: 68590859--68590974 Score: 114
Period size: 32 Copynumber: 3.3 Consensus size: 34
68590849 ACCAAAAATT
68590859 TATTTTAAAAATTAAAATAAAAATTAAAAAAA-G
1 TATTTTAAAAATTAAAATAAAAATTAAAAAAAGG
*
68590892 TATTTT-AAAATTAAAA-AAATTAA-AAAAAAAAGG
1 TATTTTAAAAATTAAAATAAA--AATTAAAAAAAGG
*
68590925 TATTTTAAAAAATTTTAAAATTAAAAAAATTAAAAAAATG
1 TATTTT-AAAAA--TTAAAA-T--AAAAATTAAAAAAAGG
68590965 TATTTTAAAA
1 TATTTTAAAA
68590975 GTATTTTAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 18
0.76 0.03 0.20
Matches are distributed among these distances:
31 3 0.04
32 17 0.25
33 15 0.22
35 4 0.06
37 6 0.09
39 6 0.09
40 14 0.21
41 3 0.04
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (34 bp):
TATTTTAAAAATTAAAATAAAAATTAAAAAAAGG
Found at i:68590912 original size:41 final size:41
Alignment explanation
Indices: 68590865--68591009 Score: 163
Period size: 41 Copynumber: 3.5 Consensus size: 41
68590855 AATTTATTTT
* *
68590865 AAAAATTAAAATAAAAATTAAAAAAAGTATTTTAAAATTAA
1 AAAAATTAAAAAAAAAATTATAAAAAGTATTTTAAAATTAA
*
68590906 AAAAATTAAAAAAAAAAGGTATTTTAAAAA--ATTTTAAAATTAA
1 AAAAATT-AAAAAAAAA---ATTATAAAAAGTATTTTAAAATTAA
** *
68590949 AAAAATTAAAAAAATGTATT-TTAAAAGTATTTTAAAATTAA
1 AAAAATTAAAAAAA-AAATTATAAAAAGTATTTTAAAATTAA
68590990 AAAAA-TAAAAAAAAAATTAT
1 AAAAATTAAAAAAAAAATTAT
68591010 TATTCGAGCC
Statistics
Matches: 88, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
39 8 0.09
40 12 0.14
41 25 0.28
42 15 0.17
43 20 0.23
45 8 0.09
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.30
Consensus pattern (41 bp):
AAAAATTAAAAAAAAAATTATAAAAAGTATTTTAAAATTAA
Found at i:68590920 original size:32 final size:33
Alignment explanation
Indices: 68590859--68590934 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 33
68590849 ACCAAAAATT
*
68590859 TATTTTAAAAATTAAAATAAAAATTAAAAAAA-G
1 TATTTT-AAAATTAAAATAAAAATAAAAAAAAGG
68590892 TATTTTAAAATTAAAA-AAATTAA-AAAAAAAAGG
1 TATTTTAAAATTAAAATAAA--AATAAAAAAAAGG
68590925 TATTTTAAAA
1 TATTTTAAAA
68590935 AATTTTAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
31 3 0.08
32 17 0.44
33 19 0.49
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (33 bp):
TATTTTAAAATTAAAATAAAAATAAAAAAAAGG
Found at i:68590921 original size:20 final size:20
Alignment explanation
Indices: 68590865--68590921 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
68590855 AATTTATTTT
68590865 AAAAATTAAAATAAAAATTAA
1 AAAAATTAAAA-AAAAATTAA
* ****
68590886 AAAAAGTATTTTAAAATTAA
1 AAAAATTAAAAAAAAATTAA
68590906 AAAAATTAAAAAAAAA
1 AAAAATTAAAAAAAAA
68590922 AGGTATTTTA
Statistics
Matches: 26, Mismatches: 10, Indels: 1
0.70 0.27 0.03
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAATTAAAAAAAAATTAA
Found at i:68606433 original size:381 final size:381
Alignment explanation
Indices: 68605730--68606618 Score: 1652
Period size: 381 Copynumber: 2.3 Consensus size: 381
68605720 AGAAAGCTTG
68605730 AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
1 AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
68605795 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGACGA
66 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGACGA
*
68605860 ACAACTTGCAGAATCAGCGGAGGCGATCTTGAGTAAGGATGCTCTTTTGATCAACCAAGCTACCA
131 ACAACTTGCAGAATCAGCAGAGGCGATCTTGAGTAAGGATGCTCTTTTGATCAACCAAGCTACCA
68605925 TGATTGAAGAAGCAGAAAAACATATTCATTCCCTTGAAACTGAAGTTGAAAAGTCAGAGGAAGCT
196 TGATTGAAGAAGCAGAAAAACATATTCATTCCCTTGAAACTGAAGTTGAAAAGTCAGAGGAAGCT
*
68605990 TGCACTGAACTTAGCCAGAGGCTTCTGGAGGAGGAGCAGCGTGCTGCTGCTATTGAACAAAAGCT
261 TGCACTGAACTTAGCAAGAGGCTTCTGGAGGAGGAGCAGCGTGCTGCTGCTATTGAACAAAAGCT
* *
68606055 TGAAGATATGGTGGAGAATGACATTTTGAAGACACAGGAGGAGCTGTCTAATCTTA
326 TGAAGATATGGTGGAGAATGACATTTTGAACACACAGGAGGAGCTGTCTAAACTTA
* *
68606111 AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGCGCAACCGTTGCTTTT
1 AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
68606176 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGACGA
66 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGACGA
*
68606241 ACAACTTTCAGAATCAGCAGAGGCGATCTTGAGTAAGGATGCTCTTTTGATCAACCAAGCTACCA
131 ACAACTTGCAGAATCAGCAGAGGCGATCTTGAGTAAGGATGCTCTTTTGATCAACCAAGCTACCA
* *
68606306 TGATTGAAGAAGCAGAAACACGTATTCATTCCCTTGAAACTGAAGTTGAAAAGTCAGAGGAAGCT
196 TGATTGAAGAAGCAGAAAAACATATTCATTCCCTTGAAACTGAAGTTGAAAAGTCAGAGGAAGCT
* *
68606371 TGCACTGAACTTCGCAAGAGGCTTCTGGAGGAGGAGCAGTGTGCTGCTGCTATTGAACAAAAGCT
261 TGCACTGAACTTAGCAAGAGGCTTCTGGAGGAGGAGCAGCGTGCTGCTGCTATTGAACAAAAGCT
* *
68606436 TGAAGATATGGTGGAGAATGACTTTTTGAACACACAGGAGGAGCTGTCTAAACTTG
326 TGAAGATATGGTGGAGAATGACATTTTGAACACACAGGAGGAGCTGTCTAAACTTA
*
68606492 AGGACAGAATGAAGATGGCTGAAGATGACCTAAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
1 AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
68606557 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGA
66 GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGA
68606619 TGCTCTTCTA
Statistics
Matches: 492, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
381 492 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (381 bp):
AGGACAGAATGAAGATGGCTGAAGATGACCTGAGAAATGCATCTACTTGTGCAACTGTTGCTTTT
GTACTTGTGAATAGATTATCAGAGGCAAACCATAATCATCTCAATGCATTGAAGGGTAAGGACGA
ACAACTTGCAGAATCAGCAGAGGCGATCTTGAGTAAGGATGCTCTTTTGATCAACCAAGCTACCA
TGATTGAAGAAGCAGAAAAACATATTCATTCCCTTGAAACTGAAGTTGAAAAGTCAGAGGAAGCT
TGCACTGAACTTAGCAAGAGGCTTCTGGAGGAGGAGCAGCGTGCTGCTGCTATTGAACAAAAGCT
TGAAGATATGGTGGAGAATGACATTTTGAACACACAGGAGGAGCTGTCTAAACTTA
Found at i:68609195 original size:222 final size:222
Alignment explanation
Indices: 68608916--68609479 Score: 853
Period size: 222 Copynumber: 2.5 Consensus size: 222
68608906 TTGTCCACTT
*
68608916 AGCTGACTCTGGGAAAAAGCTTACCAATGCTTATGCTGTC-CTTGATGGTTTAAAGAAAGAAATG
1 AGCTGACTCTGGAAAAAAGCTTACCAATGCTTATGCTGTCAC-TGATGGTTTAAAGAAAGAAATG
* * *
68608980 ACTTTTACAAAATTAGATGCATGTTTGAAAGAGCAGCTATTGGTGGAGCGGGAAAGTGAGTTGTC
65 ATTTTTGCAAAATTAGATGCATGTTTGAAAGAGCAGCTATTGGTGGAGCAGGAAAGTGAGTTGTC
* * * * * *
68609045 TTTTCTCCAAGAAAAAGTTGAAGAAGCACAGATTGAGTTAAGAATGTTGAAGAAAGAGAACTGTC
130 TTTTCTACAAGAAAAAGTTGAAGAAGCACAAATTGAGGTAAGAAAGATGAAGAAAGAAAACTGTC
* * *
68609110 TACTTCTCCAGGATTTGGAGGAGCAGAA
195 TACTTCTCCAGAATTTGGACGAGAAGAA
* *
68609138 AGCTGACTCTGGAAAAAAGCTTGCCAATGCTTATTCTGTCACTGATGGTTTAAAGAAAGAAATGA
1 AGCTGACTCTGGAAAAAAGCTTACCAATGCTTATGCTGTCACTGATGGTTTAAAGAAAGAAATGA
* *
68609203 TTTTTGCAAAATTAGATGCATGCTTGAAAGGGCAGCTATTGGTGGAGCAGGACAA-TGAGTTGTC
66 TTTTTGCAAAATTAGATGCATGTTTGAAAGAGCAGCTATTGGTGGAGCAGGA-AAGTGAGTTGTC
*
68609267 TTTTCTACAAGAAAAAGTTGAAGAAGCACAAATTGAGGTAAGAAAGATGCAGAAAGAAAACTGTC
130 TTTTCTACAAGAAAAAGTTGAAGAAGCACAAATTGAGGTAAGAAAGATGAAGAAAGAAAACTGTC
* *
68609332 TGCTTCTCCAGAATTTGGACGAGAAGGA
195 TACTTCTCCAGAATTTGGACGAGAAGAA
* * * * *
68609360 AGCAGACACCGGAAAAAAGCTTACCAATGCTTATGCTGTCATTGATGGTTTAAAGAAAGAAATAA
1 AGCTGACTCTGGAAAAAAGCTTACCAATGCTTATGCTGTCACTGATGGTTTAAAGAAAGAAATGA
* *
68609425 TTTTTGCAAAAGTAGATGCATGTTTGAAAGAGCAACTATTGGTGGAGCAGGAAAG
66 TTTTTGCAAAATTAGATGCATGTTTGAAAGAGCAGCTATTGGTGGAGCAGGAAAG
68609480 GATATCAAAG
Statistics
Matches: 308, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
221 2 0.01
222 303 0.98
223 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (222 bp):
AGCTGACTCTGGAAAAAAGCTTACCAATGCTTATGCTGTCACTGATGGTTTAAAGAAAGAAATGA
TTTTTGCAAAATTAGATGCATGTTTGAAAGAGCAGCTATTGGTGGAGCAGGAAAGTGAGTTGTCT
TTTCTACAAGAAAAAGTTGAAGAAGCACAAATTGAGGTAAGAAAGATGAAGAAAGAAAACTGTCT
ACTTCTCCAGAATTTGGACGAGAAGAA
Found at i:68620731 original size:41 final size:42
Alignment explanation
Indices: 68620657--68620738 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
68620647 AGTTAAACCG
*
68620657 ATTTATCAGTTTTTAGTTTTTTACACTTTTTATGAATTTTTT
1 ATTTATCAGTTTTTAATTTTTTACACTTTTTATGAATTTTTT
68620699 ATTTATCAGTTTTTAATTTTTTACA-TTTTTATGAATTTTT
1 ATTTATCAGTTTTTAATTTTTTACACTTTTTATGAATTTTT
68620739 AAGTATTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 15 0.38
42 24 0.62
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (42 bp):
ATTTATCAGTTTTTAATTTTTTACACTTTTTATGAATTTTTT
Found at i:68622791 original size:60 final size:63
Alignment explanation
Indices: 68622695--68622884 Score: 177
Period size: 60 Copynumber: 3.1 Consensus size: 63
68622685 TAAATTTAGA
* * *
68622695 TACCAATTTGATCCTAAA-AAAAGCTTAGGTACCAAATTAGGAAAAAAAAAGGTCAAGTTCAAG
1 TACCAAATTGAGCC-AAATAAAAGTTTAGGTACCAAATTAGGAAAAAAAAAGGTCAAGTTCAAG
* *
68622758 TACCAAATTGAG-CTAA-AAAA-TTTAGGTACCAAATTAGG----AAAAAGTGTCAAGTTCAGG
1 TACCAAATTGAGCCAAATAAAAGTTTAGGTACCAAATTAGGAAAAAAAAAG-GTCAAGTTCAAG
* * * * *
68622815 TACCAATTTGGGCCAAATAAAAGTTCATGTACCAAAATA-GAAAAAAAAA--TACAAAGTTCAAG
1 TACCAAATTGAGCCAAATAAAAGTTTAGGTACCAAATTAGGAAAAAAAAAGGT-C-AAGTTCAAG
68622877 TACCAAAT
1 TACCAAAT
68622885 GTTATATTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
56 6 0.06
57 21 0.20
58 3 0.03
59 5 0.05
60 31 0.30
61 7 0.07
62 16 0.15
63 15 0.14
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (63 bp):
TACCAAATTGAGCCAAATAAAAGTTTAGGTACCAAATTAGGAAAAAAAAAGGTCAAGTTCAAG
Found at i:68625565 original size:9 final size:9
Alignment explanation
Indices: 68625549--68625591 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
68625539 GGTATTTTTC
68625549 GGTAATTCG
1 GGTAATTCG
* *
68625558 GTTAATTCA
1 GGTAATTCG
*
68625567 GTTAATTCG
1 GGTAATTCG
68625576 GGTAATTCG
1 GGTAATTCG
68625585 GGTAATT
1 GGTAATT
68625592 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (9 bp):
GGTAATTCG
Found at i:68628622 original size:66 final size:66
Alignment explanation
Indices: 68628516--68628708 Score: 241
Period size: 66 Copynumber: 3.0 Consensus size: 66
68628506 TGAAGACAAC
* *
68628516 GATGATTCTGCATCCATGAATGCTGAAAGTGCGAAGGGAGAAGTGAAAGAAGAGGAAAAGG-AGA
1 GATGATTCTGAATCCATGAATGCTGAAAGTGCGAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAG-
68628580 AA
65 AA
* * *
68628582 GATGATTCTGTATCCATGAATGCTGAAAGTGCGAAGGGAGAAGAGAACGAAGAGGGAAAGGAAGA
1 GATGATTCTGAATCCATGAATGCTGAAAGTGCGAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAGA
68628647 A
66 A
* ** * * * *
68628648 GATGACTCTGAATCTTTAAATGCTGAAAATTC-AA--AAGAAGAGAAAGAAGAGGAAAAGGAAG
1 GATGATTCTGAATCCATGAATGCTGAAAGTGCGAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAG
68628709 GGGAGCAGGA
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
63 24 0.21
65 2 0.02
66 84 0.75
67 2 0.02
ACGTcount: A:0.44, C:0.09, G:0.31, T:0.16
Consensus pattern (66 bp):
GATGATTCTGAATCCATGAATGCTGAAAGTGCGAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAGA
A
Found at i:68633612 original size:16 final size:16
Alignment explanation
Indices: 68633591--68633621 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
68633581 AAATATTAAA
68633591 TTTATCAAGATATTTT
1 TTTATCAAGATATTTT
68633607 TTTATCAAGATATTT
1 TTTATCAAGATATTT
68633622 GTATGTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
TTTATCAAGATATTTT
Found at i:68635871 original size:13 final size:13
Alignment explanation
Indices: 68635849--68635881 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
68635839 TATAAATATG
68635849 GTAC-AATTATCC
1 GTACAAATTATCC
68635861 GTACAAATTATCC
1 GTACAAATTATCC
68635874 GTACAAAT
1 GTACAAAT
68635882 ATATGCTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (13 bp):
GTACAAATTATCC
Found at i:68636733 original size:6 final size:6
Alignment explanation
Indices: 68636724--68636757 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
68636714 GTTGTAGTAG
* *
68636724 TGGTAA TGGTAA TGGTAA TGGCAA TGGCAA TGGT
1 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA TGGT
68636758 GTGACGTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (6 bp):
TGGTAA
Found at i:68640730 original size:24 final size:24
Alignment explanation
Indices: 68640684--68640730 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
68640674 AAGAAGAAGA
* * * *
68640684 AGGAAGAATAAGGAAGAAGAAAAG
1 AGGAAGAAGAAAGAAAAAAAAAAG
68640708 AGGAAGAAGAAAGAAAAAAAAAA
1 AGGAAGAAGAAAGAAAAAAAAAA
68640731 AGAAAATCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (24 bp):
AGGAAGAAGAAAGAAAAAAAAAAG
Found at i:68640851 original size:21 final size:21
Alignment explanation
Indices: 68640827--68640867 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68640817 AAAACAACAA
68640827 AAACAAAAACAAAAAAAAAGG
1 AAACAAAAACAAAAAAAAAGG
***
68640848 AAACAAGCCCAAAAAAAAAG
1 AAACAAAAACAAAAAAAAAG
68640868 AAGAGCAGGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.76, C:0.15, G:0.10, T:0.00
Consensus pattern (21 bp):
AAACAAAAACAAAAAAAAAGG
Found at i:68641022 original size:15 final size:15
Alignment explanation
Indices: 68641002--68641066 Score: 62
Period size: 15 Copynumber: 4.2 Consensus size: 15
68640992 GGCCCAGCAG
68641002 AGAAAAAAA-AAGAAA
1 AGAAAAAAAGAA-AAA
68641017 AGAAAAAGAAGAAAAA
1 AGAAAAA-AAGAAAAA
* *
68641033 GAGAAGGAAAA-AAGAA
1 -AGAA-AAAAAGAAAAA
68641049 AGAAAAAAAGAAAAA
1 AGAAAAAAAGAAAAA
68641064 AGA
1 AGA
68641067 GGTTCAATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
14 4 0.10
15 18 0.44
16 9 0.22
17 8 0.20
18 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAGAAAAA
Found at i:68641024 original size:11 final size:11
Alignment explanation
Indices: 68641002--68641062 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
68640992 GGCCCAGCAG
68641002 AGAAAA-AAAA
1 AGAAAAGAAAA
68641012 AGAAAAGAAAA
1 AGAAAAGAAAA
68641023 AG--AAGAAAA
1 AGAAAAGAAAA
*
68641032 AGAGAAGGAAAAA
1 AGA-AAAG-AAAA
*
68641045 AGAAAGAAAAAA
1 AGAAA-AGAAAA
68641057 AGAAAA
1 AGAAAA
68641063 AAGAGGTTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
9 9 0.21
10 6 0.14
11 7 0.17
12 13 0.31
13 7 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:68641042 original size:12 final size:10
Alignment explanation
Indices: 68641002--68641066 Score: 62
Period size: 10 Copynumber: 6.3 Consensus size: 10
68640992 GGCCCAGCAG
*
68641002 AGAAAAAAAA
1 AGAAGAAAAA
*
68641012 AGAAAAGAAAA
1 AGAAGA-AAAA
68641023 AGAAGAAAAA
1 AGAAGAAAAA
68641033 GAGAAGGAAAAA
1 -AGAA-GAAAAA
68641045 AGAA-AGAAAA
1 AGAAGA-AAAA
68641055 A-AAGAAAAA
1 AGAAGAAAAA
68641064 AGA
1 AGA
68641067 GGTTCAATTC
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
9 8 0.17
10 17 0.35
11 17 0.35
12 6 0.12
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AGAAGAAAAA
Found at i:68641238 original size:16 final size:17
Alignment explanation
Indices: 68641212--68641249 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
68641202 TTATATTTAT
68641212 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
68641229 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
68641245 ATTTT
1 ATTTT
68641250 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:68641447 original size:21 final size:20
Alignment explanation
Indices: 68641415--68641456 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
68641405 TCGGGTTTCG
68641415 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTCAAAA
*
68641435 AAATTTCTCGTGTTTTCAAAA
1 AAATTT-TCGTGTCTTCAAAA
68641456 A
1 A
68641457 TAAGGTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (20 bp):
AAATTTTCGTGTCTTCAAAA
Found at i:68641457 original size:19 final size:19
Alignment explanation
Indices: 68641415--68641456 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
68641405 TCGGGTTTCG
68641415 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTC-AAA
*
68641435 AAATTTCTCGTGTTTTCAAA
1 AAATTT-TCGTGTCTTCAAA
68641455 AA
1 AA
68641457 TAAGGTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
AAATTTTCGTGTCTTCAAA
Found at i:68641615 original size:36 final size:35
Alignment explanation
Indices: 68641562--68641630 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
68641552 AAAAAATCGG
* *
68641562 AAAATTTTTCGTGTTTTCAAAAATTCCCGTGTTGC
1 AAAAATTTTCATGTTTTCAAAAATTCCCGTGTTGC
*
68641597 AAAAATTTTCATGTTTTTCAAAAATTCTCGTGTT
1 AAAAATTTTCATG-TTTTCAAAAATTCCCGTGTT
68641631 TTCAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (35 bp):
AAAAATTTTCATGTTTTCAAAAATTCCCGTGTTGC
Found at i:68641701 original size:17 final size:17
Alignment explanation
Indices: 68641562--68641913 Score: 180
Period size: 17 Copynumber: 19.9 Consensus size: 17
68641552 AAAAAATCGG
*
68641562 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
** *
68641580 AAAAATTCCCGTGTTGC
1 AAAAATTTTCGTGTTTC
*
68641597 AAAAATTTTCATGTTTTTC
1 AAAAATTTTC--GTGTTTC
*
68641616 AAAAATTCTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* * *
68641634 AAAAAAATTCCAAT-TTTC
1 -AAAAATTTTC-GTGTTTC
*
68641652 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
68641670 TAAAAA-CTTCTGTGTTTC
1 -AAAAATTTTC-GTGTTTC
68641688 AAAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
* *
68641705 TAAAATTTTCGTATTTC
1 AAAAATTTTCGTGTTTC
*
68641722 AAAAATTTTCTTGTTTTC
1 AAAAATTTTCGTG-TTTC
* * *
68641740 -AAATTTTTCGTATTTA
1 AAAAATTTTCGTGTTTC
**
68641756 AAAAATCCTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
68641774 -AAAA-TTCCAGTGTTTC
1 AAAAATTTTC-GTGTTTC
*
68641790 AAAATTTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
** *
68641807 AAAAAAAAATTCCCGTTTTTC
1 ----AAAAATTTTCGTGTTTC
* *
68641828 AAAAACTTTCGCGCTTT-
1 AAAAATTTTCGTG-TTTC
**
68641845 AAGAAATTGACCGTGTTTC
1 AA-AAATT-TTCGTGTTTC
*
68641864 ATAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
*
68641881 GAAGAAA-TCTCGTGTTTC
1 -AA-AAATTTTCGTGTTTC
*
68641899 -AAAATTTTCATGTTT
1 AAAAATTTTCGTGTTT
68641914 TTTTAAAAAT
Statistics
Matches: 247, Mismatches: 60, Indels: 56
0.68 0.17 0.15
Matches are distributed among these distances:
15 3 0.01
16 18 0.07
17 109 0.44
18 68 0.28
19 35 0.14
20 1 0.00
21 13 0.05
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:68641939 original size:15 final size:16
Alignment explanation
Indices: 68641856--68641964 Score: 60
Period size: 18 Copynumber: 6.4 Consensus size: 16
68641846 AGAAATTGAC
**
68641856 CGTGTTTCATAAATTTT
1 CGTGTTTC-TAAAAATT
*
68641873 CGTGTTTCGAAGAAATCT
1 CGTGTTTCTAA-AAAT-T
*
68641891 CGTGTTTC-AAAATTTT
1 CGTGTTTCTAAAA-ATT
* *
68641907 CATGTTTTTTTAAAAATT
1 C--GTGTTTCTAAAAATT
68641925 CGTGTTTCT-AAAATT
1 CGTGTTTCTAAAAATT
* *
68641940 CTTGTATTTTAAAAAATT
1 CGTGT-TTCT-AAAAATT
68641958 CGTGTTT
1 CGTGTTT
68641965 AAAAAAAAGG
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
15 10 0.14
16 15 0.21
17 15 0.21
18 27 0.38
19 4 0.06
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.49
Consensus pattern (16 bp):
CGTGTTTCTAAAAATT
Found at i:68641959 original size:33 final size:33
Alignment explanation
Indices: 68641885--68641969 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 33
68641875 TGTTTCGAAG
* *
68641885 AAATCTCGTGTTTCAAAATTTTCATGTTTTTTTAA
1 AAAT-TCGTGTTTCAAAA-TTTCATGTATTTTAAA
*
68641920 AAATTCGTGTTTCTAAAA-TTCTTGTATTTTAAA
1 AAATTCGTGTTTC-AAAATTTCATGTATTTTAAA
*
68641953 AAATTCGTGTTTAAAAA
1 AAATTCGTGTTTCAAAA
68641970 AAAGGAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
32 4 0.09
33 24 0.53
34 9 0.20
35 8 0.18
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (33 bp):
AAATTCGTGTTTCAAAATTTCATGTATTTTAAA
Found at i:68641967 original size:15 final size:15
Alignment explanation
Indices: 68641918--68641970 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
68641908 ATGTTTTTTT
*
68641918 AAAAATTCGTGTTTC
1 AAAAATTCGTGTTTA
* *
68641933 TAAAATTCTTGTATTTTA
1 AAAAATTC--GT-GTTTA
68641951 AAAAATTCGTGTTTA
1 AAAAATTCGTGTTTA
68641966 AAAAA
1 AAAAA
68641971 AAGGAAAAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 16 0.53
16 2 0.07
17 2 0.07
18 10 0.33
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (15 bp):
AAAAATTCGTGTTTA
Found at i:68643958 original size:4 final size:4
Alignment explanation
Indices: 68643949--68643984 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
68643939 CATTTACTTG
*
68643949 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TTAT TCAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
68643985 GTATTGCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (4 bp):
TCAT
Found at i:68647957 original size:1 final size:1
Alignment explanation
Indices: 68647951--68648040 Score: 54
Period size: 1 Copynumber: 90.0 Consensus size: 1
68647941 TATTATGCTT
* * * * * * * * * * *
68647951 AAAAAAACAAAAAAAAAAAGAAAAAAACAGAAAAAACAGAAAAAACAGACAAAACAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
68648016 AAAAAACAAAAAAAAGAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
68648041 TCAAGATGAA
Statistics
Matches: 61, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:68647965 original size:9 final size:9
Alignment explanation
Indices: 68647951--68648040 Score: 92
Period size: 9 Copynumber: 9.8 Consensus size: 9
68647941 TATTATGCTT
68647951 AAAAAAACAA
1 AAAAAAAC-A
*
68647961 AAAAAAAAA
1 AAAAAAACA
68647970 GAAAAAAACA
1 -AAAAAAACA
*
68647980 GAAAAAACA
1 AAAAAAACA
*
68647989 GAAAAAACA
1 AAAAAAACA
* *
68647998 GACAAAACA
1 AAAAAAACA
68648007 AAAAAAAC-
1 AAAAAAACA
68648015 AAAAAAACA
1 AAAAAAACA
*
68648024 AAAAAAAGA
1 AAAAAAACA
68648033 AAGAAAAA
1 AA-AAAAA
68648041 TCAAGATGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
8 8 0.11
9 42 0.60
10 20 0.29
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:68649115 original size:77 final size:77
Alignment explanation
Indices: 68648892--68649578 Score: 920
Period size: 77 Copynumber: 8.8 Consensus size: 77
68648882 TTTCAAGAAA
* * **
68648892 TATTTTTTAAAATTCTATTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
1 TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
68648957 GTCACGCTGAGG
66 GTCACGCTGAGG
68648969 TATTTTTTTAATTTAATTTCTG-TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGC
1 TA---TTTT--TTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGC
* *
68649033 ATCGGGTCACGCTGAAG
61 CTCGGGTCACGCTGAGG
*
68649050 TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATATAGAGGTGAGTTGAGCCTCGG
1 TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
68649115 GTCACGCTGAGG
66 GTCACGCTGAGG
* * *
68649127 TATTTTTTAAATTTTTGCTTTTTTTTCAAAAAATCAACTCATAATACAAAGGTGAGTTGAGCCTC
1 TATTTTTTTAATTTCTGC--TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTC
68649192 GGGTCACGCTGAGG
64 GGGTCACGCTGAGG
* * ** ***
68649206 TATTTTTAATTTATGTCTTTTTTTTTCTTTCAAATCAACTCATAATACAGAGGTGAGTTGAGCCT
1 TATTTTT--TTAATTTCTGCTTTTTTC-AAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCT
68649271 CGGGTCACGCTGAGG
63 CGGGTCACGCTGAGG
* *
68649286 TATTTTTTTTAATTTCT-ATTTTTTCAAAAAATTAACTCATAATACAGAGGTGAGTTGAGCCTCG
1 TA-TTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCG
68649350 GGTCACGCTGAGG
65 GGTCACGCTGAGG
* *
68649363 TA-TTTTTAAATTTCTACTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
1 TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
68649427 GTCACGCTGAGG
66 GTCACGCTGAGG
* * * * *
68649439 TATTTTTTTTAAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCC
1 TA-TTTTTTT-AATTTCTGCTTTTTTC-AAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCC
68649504 TCGGGTCACGCTGAGG
62 TCGGGTCACGCTGAGG
* * *
68649520 TA-TTTTTCAATTTCTG--TTTTTC-AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT
1 TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCT
68649579 TGGGCCACAT
Statistics
Matches: 549, Mismatches: 43, Indels: 39
0.87 0.07 0.06
Matches are distributed among these distances:
74 34 0.06
75 12 0.02
76 77 0.14
77 124 0.23
78 24 0.04
79 97 0.18
80 72 0.13
81 101 0.18
82 8 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (77 bp):
TATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
GTCACGCTGAGG
Found at i:68649325 original size:236 final size:232
Alignment explanation
Indices: 68648895--68649578 Score: 997
Period size: 236 Copynumber: 2.9 Consensus size: 232
68648885 CAAGAAATAT
*
68648895 TTTTTAAAATTCTA-TTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAAATTTCTACTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
*
68648959 CACGCTGAGGTATTTTTTTAATTTAATTTC-TGTTTTTTCAAAAAATCAACTCATAATACAGAGG
66 CACGCTGAGGTA--TTTTTAATTTAATTTCTTTTTTTTTCAAAAAATCAACTCATAATACAGAGG
* *
68649023 TGAGTTGAGCATCGGGTCACGCTGAAGTATTTTTTTAATTTCTGCTTTTTTCAAAAAATCAACTC
129 TGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTTTAATTTCT--TTTTTTCAAAAAATCAACTC
68649088 ATAATATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
192 ATAATATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
* * *
68649129 TTTTTTAAATTTTTGCTTTTTTTTCAAAAAATCAACTCATAATACAAAGGTGAGTTGAGCCTCGG
1 -TTTTTAAATTTCTAC-TTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
* ***
68649194 GTCACGCTGAGGTATTTTTAATTT-ATGTCTTTTTTTTTCTTTCAAATCAACTCATAATACAGAG
64 GTCACGCTGAGGTATTTTTAATTTAATTTCTTTTTTTTTC-AAAAAATCAACTCATAATACAGAG
*
68649258 GTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTTTTAATTTCTATTTTTTCAAAAAATTAACT
128 GTGAGTTGAGCCTCGGGTCACGCTGAGGTA-TTTTTTTAATTTCT-TTTTTTCAAAAAATCAACT
*
68649323 CATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
191 CATAATATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
68649365 TTTTTAAATTTCTAC-TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAAATTTCTACTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
* * * *
68649429 CACGCTGAGGTATTTTT--TTTAAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAA
66 CACGCTGAGGTATTTTTAATTT-AATTTCTTTTTTTTTC-AAAAAATCAACTCATAATAC-AGAG
* * *
68649492 GTGAGTTAAGCCTCGGGTCACGCTGAGGTA-TTTTTCAATTTCTGTTTTTC-AAAAATCAACTCA
128 GTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTTTAATTTCTTTTTTTCAAAAAATCAACTCA
* *
68649555 TATTGCTAGAGGTGAGTTGAGCCT
193 TAAT-ATAGAGGTGAGTTGAGCCT
68649579 TGGGCCACAT
Statistics
Matches: 407, Mismatches: 33, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
230 15 0.04
231 26 0.06
232 12 0.03
233 93 0.23
234 36 0.09
235 42 0.10
236 108 0.27
237 75 0.18
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (232 bp):
TTTTTAAATTTCTACTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
CACGCTGAGGTATTTTTAATTTAATTTCTTTTTTTTTCAAAAAATCAACTCATAATACAGAGGTG
AGTTGAGCCTCGGGTCACGCTGAGGTATTTTTTTAATTTCTTTTTTTCAAAAAATCAACTCATAA
TATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
Found at i:68649366 original size:157 final size:156
Alignment explanation
Indices: 68648910--68649578 Score: 905
Period size: 157 Copynumber: 4.3 Consensus size: 156
68648900 AAAATTCTAT
68648910 TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTT
1 TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--TT
* *
68648975 TTTAATTTAATTTCTGTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCATCGGGT
64 TTT--TTTAATTTCTTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
* * * *
68649040 CACGCTGAAGTATTTTT--TTAATTTCTGC
127 CACGCTGAGGTATTTTTAATTTATGTCTTC
*
68649068 TTTTTTCAAAAAATCAACTCATAATATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA-TTT
1 TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTT
* *
68649132 TTTAAATTTTTGCTTTTTTTTCAAAAAATCAACTCATAATACAAAGGTGAGTTGAGCCTCGGGTC
66 TTTTAA--TTT-CTTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTC
*
68649197 ACGCTGAGGTATTTTTAATTTATGTCTTT
128 ACGCTGAGGTATTTTTAATTTATGTCTTC
***
68649226 TTTTTTCTTTCAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 TTTTTTC-AAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
* *
68649291 TTTTTAATTTCTATTTTTTCAAAAAATTAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCAC
65 TTTTTAATTTCTTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCAC
* *
68649356 GCTGAGGTATTTTTAA---ATTTCTAC
130 GCTGAGGTATTTTTAATTTATGTCTTC
68649380 TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTT
1 TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTT
* * * *
68649445 TTTTAAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCGGGT
66 TTTT-AATTTCT-TTTTTTTC-AAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT
68649510 CACGCTGAGGTATTTTTCAA--T-T-TC-T-
127 CACGCTGAGGTATTTTT-AATTTATGTCTTC
* * *
68649535 GTTTTTC-AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT
1 TTTTTTCAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCT
68649579 TGGGCCACAT
Statistics
Matches: 463, Mismatches: 34, Indels: 31
0.88 0.06 0.06
Matches are distributed among these distances:
153 63 0.14
154 36 0.08
155 37 0.08
156 82 0.18
157 107 0.23
158 80 0.17
159 50 0.11
160 8 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (156 bp):
TTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTT
TTTTAATTTCTTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCACG
CTGAGGTATTTTTAATTTATGTCTTC
Found at i:68649813 original size:30 final size:30
Alignment explanation
Indices: 68649763--68649901 Score: 183
Period size: 30 Copynumber: 4.7 Consensus size: 30
68649753 AAAAAATTTG
*
68649763 CATTTTGACCCCTAAATTTTTTCAAAATTA
1 CATTTTGACCCCTAAACTTTTTCAAAATTA
*
68649793 CA-TTTGACCCCTAAACTTTTT-GAAATTA
1 CATTTTGACCCCTAAACTTTTTCAAAATTA
*
68649821 CATTTTGACCCCTAAACTTTCTCAAAATTA
1 CATTTTGACCCCTAAACTTTTTCAAAATTA
** *
68649851 CATTTTGACCCCTAAACTTCCTCGAAATTA
1 CATTTTGACCCCTAAACTTTTTCAAAATTA
* * *
68649881 CATTTTGGCCCCAAAAATTTT
1 CATTTTGACCCCTAAACTTTT
68649902 CCTGTGTTTG
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
28 8 0.08
29 36 0.38
30 52 0.54
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (30 bp):
CATTTTGACCCCTAAACTTTTTCAAAATTA
Found at i:68650260 original size:3 final size:3
Alignment explanation
Indices: 68650252--68650302 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
68650242 GCTAGACTTT
* *
68650252 GAA GAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAAA GAA AAA GAA
1 GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA
68650298 -AA GAA
1 GAA GAA
68650303 AAATCCTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 30 0.75
4 6 0.15
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:68650282 original size:14 final size:13
Alignment explanation
Indices: 68650252--68650288 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
68650242 GCTAGACTTT
*
68650252 GAAGAAGAAGAAG
1 GAAGAAGAAAAAG
68650265 GAAGAAGAAAAGAG
1 GAAGAAGAAAA-AG
68650279 GAAGAAGAAA
1 GAAGAAGAAA
68650289 GAAAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAAAAG
Found at i:68650287 original size:24 final size:24
Alignment explanation
Indices: 68650255--68650301 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
68650245 AGACTTTGAA
* *
68650255 GAAGAAGAAGGAAGAAGAAAAGAG
1 GAAGAAGAAAGAAAAAGAAAAGAG
68650279 GAAGAAGAAAGAAAAAGAAAAGA
1 GAAGAAGAAAGAAAAAGAAAAGA
68650302 AAAATCCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (24 bp):
GAAGAAGAAAGAAAAAGAAAAGAG
Found at i:68650593 original size:11 final size:11
Alignment explanation
Indices: 68650571--68650639 Score: 58
Period size: 10 Copynumber: 6.5 Consensus size: 11
68650561 GGCCCAGCAG
68650571 AGAAAA-AAAA
1 AGAAAAGAAAA
68650581 AGAAAAGAAAA
1 AGAAAAGAAAA
68650592 AG--AAGAAAA
1 AGAAAAGAAAA
*
68650601 AGAGAAGGAAAA
1 AGA-AAAGAAAA
* *
68650613 A-AGAAGGAAA
1 AGAAAAGAAAA
68650623 A-AAAAGAAAAA
1 AGAAAAG-AAAA
68650634 AGAAAA
1 AGAAAA
68650640 AAGAGAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
9 9 0.19
10 16 0.34
11 11 0.23
12 11 0.23
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:68650597 original size:9 final size:9
Alignment explanation
Indices: 68650585--68650669 Score: 52
Period size: 9 Copynumber: 9.0 Consensus size: 9
68650575 AAAAAAAGAA
68650585 AAGAAAAAG
1 AAGAAAAAG
68650594 AAGAAAAAGAG
1 AAG-AAAA-AG
68650605 AAGGAAAAAAG
1 AA-G-AAAAAG
*
68650616 AAGGAAAAAA
1 AA-GAAAAAG
68650626 AAG-AAAA-
1 AAGAAAAAG
68650633 AAGAAAAA-
1 AAGAAAAAG
68650641 AGAGAAAAA-
1 A-AGAAAAAG
68650650 AGAGAAAAAAG
1 A-AG-AAAAAG
*
68650661 AAAAAAAAG
1 AAGAAAAAG
68650670 GTTCAATTCG
Statistics
Matches: 67, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
7 3 0.04
8 9 0.13
9 21 0.31
10 17 0.25
11 11 0.16
12 6 0.09
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AAGAAAAAG
Found at i:68650650 original size:11 final size:11
Alignment explanation
Indices: 68650569--68650659 Score: 78
Period size: 11 Copynumber: 7.9 Consensus size: 11
68650559 TTGGCCCAGC
68650569 AGAGAAAAAAA
1 AGAGAAAAAAA
68650580 A-AGAAAAGAAA
1 AGAGAAAA-AAA
*
68650591 A-AGAAGAAAA
1 AGAGAAAAAAA
68650601 AGAGAAGGAAAAA
1 AGAGAA--AAAAA
68650614 AGAAGGAAAAAAA
1 AG-A-GAAAAAAA
*
68650627 AGAAAAAAGAAA
1 AGAGAAAA-AAA
* *
68650639 AAAGAGAAAAA
1 AGAGAAAAAAA
68650650 AGAGAAAAAA
1 AGAGAAAAAA
68650660 GAAAAAAAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
10 10 0.15
11 29 0.45
12 9 0.14
13 13 0.20
14 1 0.02
15 3 0.05
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AGAGAAAAAAA
Found at i:68650658 original size:32 final size:30
Alignment explanation
Indices: 68650578--68650666 Score: 74
Period size: 32 Copynumber: 2.8 Consensus size: 30
68650568 CAGAGAAAAA
*
68650578 AAAAGAAAAGAAAAAGAAG-AAAAAGAGAAGGA
1 AAAAAAAAAGAAAAA-AAGAAAAAAGAGAA--A
* *
68650610 AAAAAGAAGGAAAAAAAAGAAAAAAGA-AAA
1 AAAAAAAAAG-AAAAAAAGAAAAAAGAGAAA
68650640 AAGAGAAAAAAGAGAAAAAAGAAAAAA
1 AA-A-AAAAAAGA-AAAAAAGAAAAAA
68650667 AAGGTTCAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
30 3 0.06
31 2 0.04
32 30 0.64
33 12 0.26
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (30 bp):
AAAAAAAAAGAAAAAAAGAAAAAAGAGAAA
Found at i:68650840 original size:16 final size:17
Alignment explanation
Indices: 68650814--68650851 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
68650804 TTATATTTAT
68650814 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
68650831 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
68650847 ATTTT
1 ATTTT
68650852 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:68651050 original size:21 final size:20
Alignment explanation
Indices: 68651018--68651059 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
68651008 TCGGGTTTCG
68651018 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTCAAAA
68651038 AAATTTCTCGTGTCTTCAAAA
1 AAATTT-TCGTGTCTTCAAAA
68651059 A
1 A
68651060 TAAGGTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
AAATTTTCGTGTCTTCAAAA
Found at i:68651060 original size:19 final size:19
Alignment explanation
Indices: 68651018--68651059 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 19
68651008 TCGGGTTTCG
68651018 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTC-AAA
68651038 AAATTTCTCGTGTCTTCAAA
1 AAATTT-TCGTGTCTTCAAA
68651058 AA
1 AA
68651060 TAAGGTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
AAATTTTCGTGTCTTCAAA
Found at i:68651195 original size:18 final size:18
Alignment explanation
Indices: 68651165--68651517 Score: 196
Period size: 17 Copynumber: 19.9 Consensus size: 18
68651155 AAAAAATCAG
*
68651165 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
** *
68651183 AAAAATTCCCGTG-TTGC
1 AAAAATTTTCGTGTTTTC
* *
68651200 AAAAATTTTCATATTTTTC
1 AAAAATTTTCGT-GTTTTC
*
68651219 AAAAATTCTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
** ***
68651237 AAAAAAATTCCAATTTTC
1 AAAAATTTTCGTGTTTTC
*
68651255 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
68651273 TAAAAACTTCCGTG-TTTC
1 -AAAAATTTTCGTGTTTTC
*
68651291 AAAAATTTTCATG-TTTC
1 AAAAATTTTCGTGTTTTC
* *
68651308 TAAAATTTTCGT-ATTTC
1 AAAAATTTTCGTGTTTTC
*
68651325 AAAAATTTTCTTGTTTTC
1 AAAAATTTTCGTGTTTTC
* * *
68651343 -AAATTTTTCGT-ATTTA
1 AAAAATTTTCGTGTTTTC
**
68651359 AAAAATCCTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
*
68651377 -AAAA-TTCCAGTG-TTTC
1 AAAAATTTTC-GTGTTTTC
**
68651393 AAAAATTTTCGTGTTTAAAAA
1 AAAAATTTTCGTGTTT---TC
**
68651414 AAAAATTCCCGT-TTTTC
1 AAAAATTTTCGTGTTTTC
* *
68651431 AAAAATTTTTGCGTTTT-
1 AAAAATTTTCGTGTTTTC
**
68651448 AAGAAATTGACCGTG-TTTC
1 AA-AAATT-TTCGTGTTTTC
*
68651467 ATAAATTTTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
* *
68651484 AAAGAAATCTCGTG-TTTC
1 AAA-AATTTTCGTGTTTTC
68651502 -AAAATTTTCGTGTTTT
1 AAAAATTTTCGTGTTTT
68651518 TTTAAAAATT
Statistics
Matches: 245, Mismatches: 70, Indels: 41
0.69 0.20 0.12
Matches are distributed among these distances:
16 16 0.07
17 106 0.43
18 84 0.34
19 26 0.11
20 3 0.01
21 10 0.04
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:68651531 original size:18 final size:18
Alignment explanation
Indices: 68651508--68651566 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
68651498 TTTCAAAATT
68651508 TTCGTGTTTTTTTAAAAA
1 TTCGTGTTTTTTTAAAAA
*
68651526 TTCGTG--TTTCT-AAAA
1 TTCGTGTTTTTTTAAAAA
* * *
68651541 TTCTTGTATTTTAAAAAA
1 TTCGTGTTTTTTTAAAAA
68651559 TTCGTGTT
1 TTCGTGTT
68651567 AAAAAAAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
15 9 0.28
16 4 0.12
17 3 0.09
18 16 0.50
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (18 bp):
TTCGTGTTTTTTTAAAAA
Found at i:68651531 original size:34 final size:33
Alignment explanation
Indices: 68651215--68651566 Score: 160
Period size: 34 Copynumber: 10.1 Consensus size: 33
68651205 TTTTCATATT
* * *
68651215 TTTCAAAAATTCTCGTGTTTTCAAAAAAATTCCAAT-
1 TTTC-AAAATTTTCGTGTTTT-TAAAAAATT-C-GTG
*
68651251 TTTCAAAATTTTTCGTGTTTTCTAAAAACTTCCGTG
1 TTTCAAAA-TTTTCGTGTTTT-TAAAAAATT-CGTG
* * ** *
68651287 TTTCAAAAATTTTCATGTTTCTAAAATTTTCGTA
1 TTTC-AAAATTTTCGTGTTTTTAAAAAATTCGTG
* * *** *
68651321 TTTCAAAAATTTTCTTGTTTTCAAATTTTTCGTA
1 TTTC-AAAATTTTCGTGTTTTTAAAAAATTCGTG
* ** *
68651355 TTTAAAAAATCCTCGTG-TTTT-CAAAATTCCAGTG
1 TTT-CAAAATTTTCGTGTTTTTAAAAAATT-C-GTG
** *
68651389 TTTCAAAAATTTTCGTGTTTAAAAAAAAAATTCCCGTT
1 TTTC-AAAATTTTCGTGTTT--TTAAAAAATT--CGTG
* * *
68651427 TTTCAAAAATTTTTGCG-TTTTAAGAAATTGACCGTG
1 TTTC-AAAATTTTCGTGTTTTTAAAAAATT---CGTG
*
68651463 TTTCATAAATTTTCGTG-TTTCAAAGAAATCTCGTG
1 TTTCA-AAATTTTCGTGTTTTTAAA-AAAT-TCGTG
*
68651498 TTTCAAAATTTTCGTGTTTTTTTAAAAATTCGTG
1 TTTCAAAATTTTCGTG-TTTTTAAAAAATTCGTG
*
68651532 TTTCTAAAATTCTT-GT-ATTTTAAAAAATTCGTG
1 TTTC-AAAATT-TTCGTGTTTTTAAAAAATTCGTG
68651565 TT
1 TT
68651567 AAAAAAAAAG
Statistics
Matches: 251, Mismatches: 45, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
32 3 0.01
33 21 0.08
34 80 0.32
35 43 0.17
36 68 0.27
37 10 0.04
38 24 0.10
39 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.10, T:0.46
Consensus pattern (33 bp):
TTTCAAAATTTTCGTGTTTTTAAAAAATTCGTG
Found at i:68651562 original size:33 final size:33
Alignment explanation
Indices: 68651459--68651566 Score: 105
Period size: 33 Copynumber: 3.2 Consensus size: 33
68651449 AGAAATTGAC
*
68651459 CGTGTTTCATAAATTTTCGTG--TTTCAAAGAAATCT
1 CGTGTTTCA-AAA-TTTCGTGTATTTTAAA-AAAT-T
* *
68651494 CGTGTTTCAAAATTTTCGTGTTTTTTTAAAAATT
1 CGTGTTTCAAAA-TTTCGTGTATTTTAAAAAATT
*
68651528 CGTGTTTCTAAAA-TTCTTGTATTTTAAAAAATT
1 CGTGTTTC-AAAATTTCGTGTATTTTAAAAAATT
68651561 CGTGTT
1 CGTGTT
68651567 AAAAAAAAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
33 23 0.35
34 20 0.31
35 17 0.26
36 5 0.08
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (33 bp):
CGTGTTTCAAAATTTCGTGTATTTTAAAAAATT
Found at i:68657494 original size:21 final size:20
Alignment explanation
Indices: 68657457--68657495 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68657447 ATGTTTAATG
* *
68657457 GTTTTTTAATTTTAAAAATA
1 GTTTTTTAAATTAAAAAATA
68657477 GTTTTTATAAATTAAAAAA
1 GTTTTT-TAAATTAAAAAA
68657496 AAATAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
GTTTTTTAAATTAAAAAATA
Found at i:68658651 original size:30 final size:29
Alignment explanation
Indices: 68658603--68658670 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
68658593 AATTGATGAG
* * *
68658603 AATTGGATCAAATAAAAATTTTATGTATAA
1 AATTGTATAAAATAAAAATTAT-TGTATAA
*
68658633 AATTGTATAAAATCAAAATTATTGTATAA
1 AATTGTATAAAATAAAAATTATTGTATAA
*
68658662 AAGTGTATA
1 AATTGTATA
68658671 TTAGACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.37
Consensus pattern (29 bp):
AATTGTATAAAATAAAAATTATTGTATAA
Found at i:68658668 original size:29 final size:30
Alignment explanation
Indices: 68658612--68658670 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
68658602 GAATTGGATC
* *
68658612 AAATAAAAATTTTATGTATAAAATTGTATA
1 AAATAAAAATTATATGTATAAAAGTGTATA
*
68658642 AAATCAAAATTAT-TGTATAAAAGTGTATA
1 AAATAAAAATTATATGTATAAAAGTGTATA
68658671 TTAGACCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (30 bp):
AAATAAAAATTATATGTATAAAAGTGTATA
Found at i:68664732 original size:30 final size:30
Alignment explanation
Indices: 68664676--68664732 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
68664666 ATGATTTAAT
*
68664676 TTGAATTTTAAAAACTAAAAAGTAGAGGGA
1 TTGAATTTTAAAAACTAAAAAATAGAGGGA
68664706 TTGAATTTT-AAAACTAAAAATATAGAG
1 TTGAATTTTAAAAACTAAAAA-ATAGAG
68664733 ACTAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.30
Consensus pattern (30 bp):
TTGAATTTTAAAAACTAAAAAATAGAGGGA
Found at i:68666215 original size:35 final size:35
Alignment explanation
Indices: 68666169--68666239 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
68666159 GATATGGATG
68666169 TGTGTATGATGTTATGTTGTTTTTCTTATGATTTT
1 TGTGTATGATGTTATGTTGTTTTTCTTATGATTTT
68666204 TGTGTATGATGTTATGTTGTTTTTCTTATGATTTT
1 TGTGTATGATGTTATGTTGTTTTTCTTATGATTTT
68666239 T
1 T
68666240 CATAGTCCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.14, C:0.03, G:0.20, T:0.63
Consensus pattern (35 bp):
TGTGTATGATGTTATGTTGTTTTTCTTATGATTTT
Found at i:68669348 original size:32 final size:32
Alignment explanation
Indices: 68669268--68669354 Score: 79
Period size: 32 Copynumber: 2.7 Consensus size: 32
68669258 TTAGAGGGTT
*
68669268 TTAAACTATAAATTTACCATTTTTAAAGGGAGG
1 TTAAA-TATAAATTTACAATTTTTAAAGGGAGG
* * **
68669301 TCAAATACAGTTTTACATAATTTTTAAA-GG-GG
1 TTAAATATAAATTTAC--AATTTTTAAAGGGAGG
*
68669333 TTAAATATAAATTTACCATTTT
1 TTAAATATAAATTTACAATTTT
68669355 AGAGAGGCAA
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
30 5 0.12
32 22 0.52
33 6 0.14
34 9 0.21
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.40
Consensus pattern (32 bp):
TTAAATATAAATTTACAATTTTTAAAGGGAGG
Found at i:68672012 original size:15 final size:15
Alignment explanation
Indices: 68671988--68672021 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
68671978 AACAATTACG
*
68671988 ATAATGCGAGCAAAA
1 ATAATACGAGCAAAA
68672003 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
68672018 ATAA
1 ATAA
68672022 CAAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.15, T:0.15
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:68672142 original size:19 final size:19
Alignment explanation
Indices: 68672113--68672168 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
68672103 AATAATGGAC
68672113 ACATAAA-TAAATAAATAA
1 ACATAAAGTAAATAAATAA
68672131 ACATAAAGTAAA-ACAATAA
1 ACATAAAGTAAATA-AATAA
*
68672150 TA-ATAAAG-AAATGAATAA
1 -ACATAAAGTAAATAAATAA
68672168 A
1 A
68672169 ATTATAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 1 0.03
18 16 0.48
19 15 0.45
20 1 0.03
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (19 bp):
ACATAAAGTAAATAAATAA
Found at i:68673028 original size:9 final size:9
Alignment explanation
Indices: 68673014--68673055 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
68673004 TTCTATAAAC
68673014 AACAAAAAA
1 AACAAAAAA
*
68673023 AACAAAACA
1 AACAAAAAA
68673032 AA-AAAAAA
1 AACAAAAAA
*
68673040 CA-AAAAAA
1 AACAAAAAA
68673048 AACAAAAA
1 AACAAAAA
68673056 GTCCTCTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 13 0.46
9 15 0.54
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (9 bp):
AACAAAAAA
Found at i:68673037 original size:15 final size:14
Alignment explanation
Indices: 68673017--68673054 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
68673007 TATAAACAAC
68673017 AAAAAAAACAAAACA
1 AAAAAAAACAAAA-A
68673032 AAAAAAAACAAAAA
1 AAAAAAAACAAAAA
68673046 AAAACAAAA
1 AAAA-AAAA
68673055 AGTCCTCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAAAA
Found at i:68673039 original size:10 final size:10
Alignment explanation
Indices: 68673020--68673055 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
68673010 AAACAACAAA
68673020 AAAAACAAAAC
1 AAAAA-AAAAC
68673031 AAAAAAAAAC
1 AAAAAAAAAC
68673041 AAAAAAAAAC
1 AAAAAAAAAC
68673051 AAAAA
1 AAAAA
68673056 GTCCTCTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:68673768 original size:12 final size:12
Alignment explanation
Indices: 68673751--68673775 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68673741 TTAGGGTTTT
68673751 CCAAATTTTGGG
1 CCAAATTTTGGG
68673763 CCAAATTTTGGG
1 CCAAATTTTGGG
68673775 C
1 C
68673776 TTGAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (12 bp):
CCAAATTTTGGG
Found at i:68676389 original size:17 final size:19
Alignment explanation
Indices: 68676363--68676401 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
68676353 CCCGACGTTT
68676363 AAATAAATTT-AATTAA-A
1 AAATAAATTTAAATTAAGA
*
68676380 AAATATATTTAAATTAAGA
1 AAATAAATTTAAATTAAGA
68676399 AAA
1 AAA
68676402 CAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 6 0.32
19 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATAAATTTAAATTAAGA
Found at i:68676973 original size:25 final size:25
Alignment explanation
Indices: 68676944--68676993 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
68676934 AGGGCCAAAT
*
68676944 TTAAATTTAAAAAAAAGAATA-AAAG
1 TTAAATTGAAAAAAAA-AATATAAAG
*
68676969 TTAAATTGACAAAAAAAATATAAAG
1 TTAAATTGAAAAAAAAAATATAAAG
68676994 GTTGAGGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (25 bp):
TTAAATTGAAAAAAAAAATATAAAG
Found at i:68678532 original size:3 final size:3
Alignment explanation
Indices: 68678524--68678562 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
68678514 TTTTCTTTCT
** *
68678524 TTC TTC TTC TTC TTC TTC TTC TAG ATC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
68678563 CTTTACAATG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.05, C:0.31, G:0.03, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:68680110 original size:204 final size:205
Alignment explanation
Indices: 68679694--68680216 Score: 791
Period size: 204 Copynumber: 2.6 Consensus size: 205
68679684 GCTCAGCCGA
* * *
68679694 AAAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAACCATTATCCGGGTTTGGTACCATTCA
1 AAAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAATCGTTATCCGGGTTTGGTACCGTTCA
* * * *
68679759 TTCGTATGATAAAAGCG--TGTGTTTTTGGTTGTCGAGGTGTCCGTTTATTCTAGGAAATCAACG
66 TTCATATGATAAAAGTGTTTGTGTTTTTGGTAGTCGAGGTGTCCGTTTATTCTAGGAAATAAACG
* *
68679822 ACGTTGTTGTGATAATTATAGCCTGTTAACCAATACGGTGTTTTCTTTTACCAGCTTGTCCTTAA
131 ACGTTATTGTGATAATTATAGCCTGTTAACCAATACGGTGTTTTCTTTTACCAGCTTGTACTTAA
*
68679887 GGCTTAACCCC
196 GCCTTAA-CCC
**
68679898 CCAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAATCGTTATCCGGGTTTGGTACCGTTCA
1 AAAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAATCGTTATCCGGGTTTGGTACCGTTCA
* *
68679963 TTCATATGATAAAAGTGTTTGTGTTTTTGGTAGTCGAGGTGTCGGTTTATTCTAGGAAATAAAGG
66 TTCATATGATAAAAGTGTTTGTGTTTTTGGTAGTCGAGGTGTCCGTTTATTCTAGGAAATAAACG
* * *
68680028 ACGTTATTGTGATAATTATAGCCTGTTAACTAATACGGTGTTTTCTTTTACCGGCTTGTACTTAT
131 ACGTTATTGTGATAATTATAGCCTGTTAACCAATACGGTGTTTTCTTTTACCAGCTTGTACTTAA
68680093 GCCTTAA-CC
196 GCCTTAACCC
* * *
68680102 AAAAAAAAAGAAATGGTTTGTGTTGTAGTTGATTGCAAATTGTTATCCGGGTTTGGTACCGGTCA
1 AAAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAATCGTTATCCGGGTTTGGTACCGTTCA
* * * *
68680167 TTCACATGATAAAAGTGTTTGTGTTTTTTGCTAGTCGAGGTATCCATTTA
66 TTCATATGATAAAAGTGTTTGTG-TTTTTGGTAGTCGAGGTGTCCGTTTA
68680217 GGAAATAAAG
Statistics
Matches: 289, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
204 159 0.55
205 22 0.08
206 108 0.37
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (205 bp):
AAAAAAAAACAAATGGTTTGTGTTGTAGTTGATTGCAAATCGTTATCCGGGTTTGGTACCGTTCA
TTCATATGATAAAAGTGTTTGTGTTTTTGGTAGTCGAGGTGTCCGTTTATTCTAGGAAATAAACG
ACGTTATTGTGATAATTATAGCCTGTTAACCAATACGGTGTTTTCTTTTACCAGCTTGTACTTAA
GCCTTAACCC
Found at i:68683578 original size:31 final size:31
Alignment explanation
Indices: 68683519--68683579 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
68683509 ACTTATTTTA
**
68683519 GGCTTCAATGTTTAATTTGGTATTTGAGTTC
1 GGCTTCAATGTTTAATTTGGTACATGAGTTC
* *
68683550 GGCTTTAATGTTTAGTTTGGTACATGAGTT
1 GGCTTCAATGTTTAATTTGGTACATGAGTT
68683580 TTTTCAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.08, G:0.25, T:0.48
Consensus pattern (31 bp):
GGCTTCAATGTTTAATTTGGTACATGAGTTC
Found at i:68695612 original size:19 final size:19
Alignment explanation
Indices: 68695563--68695612 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
68695553 ATATATAAAC
*
68695563 AAAACATGAAAAATAGTTT
1 AAAACATGAAAAATAGTTA
* *
68695582 AAAGCATTAAAAATA-TATA
1 AAAACATGAAAAATAGT-TA
68695601 AAAACATGAAAA
1 AAAACATGAAAA
68695613 TCTCTTTCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 1 0.04
19 24 0.96
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (19 bp):
AAAACATGAAAAATAGTTA
Found at i:68696935 original size:96 final size:96
Alignment explanation
Indices: 68696756--68696954 Score: 272
Period size: 96 Copynumber: 2.1 Consensus size: 96
68696746 CCTCGAATTA
* * * * * *
68696756 GAAACTGAACTAATACTCTCAGTAGACCGGAAGCTTGCATTTTTCACATCCTCCGATTCTTTCCT
1 GAAACCGAACTAATACTCTCAGTAGACCGAAAACTTGCACTCTGCACATCCTCCGATTCTTTCCT
*
68696821 AGACAAAACGGCACAATTCAACTCGTGAACC
66 AGACAAAACAGCACAATTCAACTCGTGAACC
* *
68696852 GAAACCGAACTGATACTCTCGGTAGACCGAAAACTTGCACTCTGCACATCCTCCGATTCTTTCCT
1 GAAACCGAACTAATACTCTCAGTAGACCGAAAACTTGCACTCTGCACATCCTCCGATTCTTTCCT
* * * * *
68696917 ATACAGAACATCATAATTCAACTCGTGAGCC
66 AGACAAAACAGCACAATTCAACTCGTGAACC
68696948 GAAACCG
1 GAAACCG
68696955 GTCTTCTCCT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (96 bp):
GAAACCGAACTAATACTCTCAGTAGACCGAAAACTTGCACTCTGCACATCCTCCGATTCTTTCCT
AGACAAAACAGCACAATTCAACTCGTGAACC
Found at i:68697035 original size:123 final size:120
Alignment explanation
Indices: 68696852--68697246 Score: 436
Period size: 123 Copynumber: 3.3 Consensus size: 120
68696842 CTCGTGAACC
* * * * * * *
68696852 GAAACCGAACTGATACTCTCGGTAGACCGAAAACTTGCACTCTGCACATCCTCCGATTCTTTCCT
1 GAAACCAAACCGATACTCTCAGTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCT
*
68696917 ATACAGAACATCATAATTCAACTCGTGAGCCGAAACCGGTCTTCTCCTCCTCGAGTT
66 ATACAAAACATCATAATTCAACTCGTGAGCCGAAACCGGTC-TCTCCTCCTCGAG-T
* * * *
68696974 AGAAACCAAACCGATACTCTCACTAGACCGAAAGCTTACATTTTTTACATCCTCCGGTTCTTTCC
1 -GAAACCAAACCGATACTCTCAGTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCC
* * *
68697039 TATACAAAACAGCACAATTCAACTCGTGAGCCGAATCCGGTC-CT-CT-C-C---T
65 TATACAAAACATCATAATTCAACTCGTGAGCCGAAACCGGTCTCTCCTCCTCGAGT
* *
68697088 -----CAAACCGATACTCTCAGTAGACCGAAAACTTGCATTCTTCACATCCTCCGGTTCTTTCCC
1 GAAACCAAACCGATACTCTCAGTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCT
*
68697148 ATACAAAACATCATGATTCAACTCGTGAGCCGAAACCGGTCCTCTCCTCCTCGAGCT
66 ATACAAAACATCATAATTCAACTCGTGAGCCGAAACCGGT-CTCTCCTCCTCGAG-T
** * * * *
68697205 CGAAACTGAACCTATACTCTCAGTGGACCGGAAGCTTACATT
1 -GAAACCAAACCGATACTCTCAGTAGACCGAAAACTTACATT
68697247 TTTCCTACAC
Statistics
Matches: 225, Mismatches: 32, Indels: 30
0.78 0.11 0.10
Matches are distributed among these distances:
108 90 0.40
109 1 0.00
110 2 0.01
111 2 0.01
112 1 0.00
113 1 0.00
114 1 0.00
117 1 0.00
118 1 0.00
119 1 0.00
120 2 0.01
121 2 0.01
123 120 0.53
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (120 bp):
GAAACCAAACCGATACTCTCAGTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCT
ATACAAAACATCATAATTCAACTCGTGAGCCGAAACCGGTCTCTCCTCCTCGAGT
Found at i:68697169 original size:108 final size:108
Alignment explanation
Indices: 68696980--68697196 Score: 344
Period size: 108 Copynumber: 2.0 Consensus size: 108
68696970 AGTTAGAAAC
* * * *
68696980 CAAACCGATACTCTCACTAGACCGAAAGCTTACATTTTTTACATCCTCCGGTTCTTTCCTATACA
1 CAAACCGATACTCTCACTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCCATACA
*
68697045 AAACAGCACAATTCAACTCGTGAGCCGAATCCGGTCCTCTCCT
66 AAACAGCACAATTCAACTCGTGAGCCGAAACCGGTCCTCTCCT
* *
68697088 CAAACCGATACTCTCAGTAGACCGAAAACTTGCATTCTTCACATCCTCCGGTTCTTTCCCATACA
1 CAAACCGATACTCTCACTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCCATACA
* **
68697153 AAACATCATGATTCAACTCGTGAGCCGAAACCGGTCCTCTCCT
66 AAACAGCACAATTCAACTCGTGAGCCGAAACCGGTCCTCTCCT
68697196 C
1 C
68697197 CTCGAGCTCG
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 99 1.00
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.27
Consensus pattern (108 bp):
CAAACCGATACTCTCACTAGACCGAAAACTTACATTCTTCACATCCTCCGGTTCTTTCCCATACA
AAACAGCACAATTCAACTCGTGAGCCGAAACCGGTCCTCTCCT
Found at i:68698153 original size:22 final size:22
Alignment explanation
Indices: 68698125--68698171 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
68698115 AATTTATCCA
68698125 TTTATACTGTTAAAAATTAGCT
1 TTTATACTGTTAAAAATTAGCT
*
68698147 TTTATACTGTTAAAACTTAGCT
1 TTTATACTGTTAAAAATTAGCT
68698169 TTT
1 TTT
68698172 GTATGCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.49
Consensus pattern (22 bp):
TTTATACTGTTAAAAATTAGCT
Found at i:68706568 original size:9 final size:9
Alignment explanation
Indices: 68706552--68706603 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
68706542 GGTATTTTTC
68706552 GGTAATTCG
1 GGTAATTCG
*
68706561 GTTAATTCG
1 GGTAATTCG
*
68706570 GTTAATTCG
1 GGTAATTCG
68706579 GGTAATTCG
1 GGTAATTCG
68706588 GGTAATTCG
1 GGTAATTCG
68706597 GGTAATT
1 GGTAATT
68706604 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:68706931 original size:90 final size:86
Alignment explanation
Indices: 68706788--68707093 Score: 280
Period size: 90 Copynumber: 3.4 Consensus size: 86
68706778 GAACACCCCT
* * *
68706788 AAGCTCAAGTGCCCCAGAAATGAAATATAATAAATAACAAAATTTATAATTATCTCGAAAAAATT
1 AAGCTCAAGTGCCCCA-AAATGAAATATAATAAATAA-TAATTTTATAGTTATC-CGAAAAAATT
*
68706853 TAAAAAAATTGCATCATCATACTC
63 TAAAAAAATTGCATCACCATACTC
* * * *
68706877 AAAGCTGAAGTGCTCCAAAAGTGAAATATAATAAATAATAATTTTAATAGTTATCCCAAAAGTAT
1 -AAGCTCAAGTGCCCCAAAA-TGAAATATAATAAATAATAATTTT-ATAGTTATCCGAAAA-AAT
* **
68706942 TCAAAAAAAATTTG-GGCACCATACTC
62 T-TAAAAAAA-TTGCATCACCATACTC
*
68706968 AAGC-CTAAGTACCCCGAAAATGAAATATAATAAATAATAATTTTTATAGTTATCCTG--AAAA-
1 AAGCTC-AAGTGCCCC-AAAATGAAATATAATAAATAATAA-TTTTATAGTTATCC-GAAAAAAT
* *
68707029 TTAAAAAAATAAGCATCACCGTACTC
62 TTAAAAAAAT-TGCATCACCATACTC
* * *
68707055 AAGCCCAAGTGCCTCAAAAAATGAAATGTAATAAATAAT
1 AAGCTCAAGTGCC-C-CAAAATGAAATATAATAAATAAT
68707094 TTTAGCACCA
Statistics
Matches: 178, Mismatches: 24, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
85 1 0.01
86 8 0.04
87 20 0.11
88 24 0.13
89 15 0.08
90 83 0.47
91 24 0.13
92 3 0.02
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.26
Consensus pattern (86 bp):
AAGCTCAAGTGCCCCAAAATGAAATATAATAAATAATAATTTTATAGTTATCCGAAAAAATTTAA
AAAAATTGCATCACCATACTC
Found at i:68707275 original size:140 final size:140
Alignment explanation
Indices: 68706957--68707375 Score: 411
Period size: 141 Copynumber: 3.0 Consensus size: 140
68706947 AAAAATTTGG
* * * *
68706957 GCACCATACTCAAGCCTAAGTACCCCGAAAATGAAATATAATAAATAATAATTTTTATAGTTATC
1 GCACCATACTCAAGCCCAAGTGCCCCGAAAATGAAATATAATAAATAATAATTTTTACAATTATC
* * * * *
68707022 CTGAAAATTAAAAAAATAAGCATCACCGTACTCAAGCCCAAGTGCCTCAAAAAATGAAATGTAAT
66 CTGAAAAATAAAAAAATAAGCA-CACCATACTCAAACCCAAATGCCTCAAAAAATGAAATATAAT
68707087 AAATAATTTTA
130 AAATAATTTTA
* * * *
68707098 GCACCATACTCAAGCACAAGTGCCCCCAAAATAAAATATAATACATAATAATTTTTACAATTATC
1 GCACCATACTCAAGCCCAAGTGCCCCGAAAATGAAATATAATAAATAATAATTTTTACAATTATC
* ** * * **
68707163 TTGGAAAAATAAAAAAATTTGGGA-ACCATACTCAAACTCAAATGCC-CTGAAAATGAAATATAA
66 CT-GAAAAATAAAAAAA-TAAGCACACCATACTCAAACCCAAATGCCTCAAAAAATGAAATATAA
68707226 TAAATAATTGTTA
129 TAAATAATT-TTA
* * * *
68707239 -CACCGTACTAAAGCCCAAGTGCCCCGAAATTGAAATATAATAAATAATAA-TTTTA-TATTAT-
1 GCACCATACTCAAGCCCAAGTGCCCCGAAAATGAAATATAATAAATAATAATTTTTACAATTATC
* ** * * * * *
68707300 CTCAAAAAATTAAAAAATATTTTTGCACCACCATAATCAAGCCCAAATACCTC-GAAAATGAGAT
66 CT-GAAAAA-TAAAAAA-A--TAAGCA-CACCATACTCAAACCCAAATGCCTCAAAAAATGAAAT
68707364 ATAATAAATAAT
125 ATAATAAATAAT
68707376 ATTTTTTACA
Statistics
Matches: 231, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
137 6 0.03
138 12 0.05
139 6 0.03
140 71 0.31
141 79 0.34
142 53 0.23
143 4 0.02
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.26
Consensus pattern (140 bp):
GCACCATACTCAAGCCCAAGTGCCCCGAAAATGAAATATAATAAATAATAATTTTTACAATTATC
CTGAAAAATAAAAAAATAAGCACACCATACTCAAACCCAAATGCCTCAAAAAATGAAATATAATA
AATAATTTTA
Found at i:68707693 original size:184 final size:187
Alignment explanation
Indices: 68707239--68707801 Score: 471
Period size: 184 Copynumber: 3.0 Consensus size: 187
68707229 ATAATTGTTA
* * ** * *
68707239 CACCGTACTAAAGCCCAAGTGCCCCGAAATTGAAATATAATAAATAATAA-TTTTATA-TTATCT
1 CACCATACTAAAGCCCAATTGCCCAAAAATTG-AATATAAAAAATAATAATTTTTACAGTTATC-
** *** * * * *
68707302 CAAAAAAT-TAAAAAATATTTTTGCACCACCATA-A-TCAAGC-CCAAATACC-TCGAAAATGAG
64 CGGAAAATATAAAAAATATTTTTGGTGCACCATACAGT--AGCTCAAAATGCCAT-GAACATGAA
* ** *
68707362 ATATAATAAATAATATTTTTTACAGTTATCCCGGAAAATTAAAATATATATATTTTTTGGTG
126 ATATAATAAATAATATTTTTCACAGTTATCCCAAAAAATTAAAATATATATATTTTTTGATG
* * * *
68707424 CACCATACTAAAGCCCAATTGCCCAAAAATTGAATATAATAAATCATATTTTTTACAGTTATCCT
1 CACCATACTAAAGCCCAATTGCCCAAAAATTGAATATAAAAAATAATAATTTTTACAGTTATCCG
68707489 GAAAATATAAAAAATATTTTTGGTGCACCATACAGTAGCTCAAAATGCCATGAACATGAAATATA
66 GAAAATATAAAAAATATTTTTGGTGCACCATACAGTAGCTCAAAATGCCATGAACATGAAATATA
** * *
68707554 ATAAATAATATTTTTCGTAGTTGTCTCAAAAAATTAAAATA-A-ATA-TTTTTGCAT-
131 ATAAATAATATTTTTCACAGTTATCCCAAAAAATTAAAATATATATATTTTTTG-ATG
* * * * *
68707608 CACCATACTCAA-TCCTATATGCCTAAAAA-TGAAATATAAAAAATAATAATTTTTATAGTTATC
1 CACCATACTAAAGCCCAAT-TGCCCAAAAATTG-AATATAAAAAATAATAATTTTTACAGTTAT-
** *** * * * *** *
68707671 CCGGAAAAT-TAAATCATATTTTTGCACCACCGTACTA-AAGCTC-AATTGTTTTGAAAATGAAA
63 CCGGAAAATATAAAAAATATTTTTGGTGCACCATAC-AGTAGCTCAAAATGCCATGAACATGAAA
* *
68707733 TATAATAAATAATAATTTTT-ACATTTATCCCATAAAATT-AAATATATATATTTTTTG-TAG
127 TATAATAAATAAT-ATTTTTCACAGTTATCCCAAAAAATTAAAATATATATATTTTTTGAT-G
68707793 CACCATACT
1 CACCATACT
68707802 CAAGTTCAAA
Statistics
Matches: 309, Mismatches: 51, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
182 5 0.02
183 48 0.16
184 101 0.33
185 68 0.22
186 31 0.10
187 54 0.17
188 2 0.01
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (187 bp):
CACCATACTAAAGCCCAATTGCCCAAAAATTGAATATAAAAAATAATAATTTTTACAGTTATCCG
GAAAATATAAAAAATATTTTTGGTGCACCATACAGTAGCTCAAAATGCCATGAACATGAAATATA
ATAAATAATATTTTTCACAGTTATCCCAAAAAATTAAAATATATATATTTTTTGATG
Found at i:68707746 original size:91 final size:90
Alignment explanation
Indices: 68707239--68708212 Score: 455
Period size: 91 Copynumber: 10.6 Consensus size: 90
68707229 ATAATTGTTA
* * * * * *
68707239 CACCGTACTAAAGCCCAAGTGCCCCGAAATTGAAATATAATAAATAATAA-TTTTATA-TTATCT
1 CACCATACTAAAGCCCAATTG-CCTGAAAATGAAATATAATAAATAATAATTTTTACAGTTATCC
* *
68707302 CAAAAAATTAAAAAATATTTTTGCAC
65 CAGAAAATTAAATAATATTTTTGCAC
* * * * * *
68707328 CACCATAATCAAGCCCAAATACCTCGAAAATGAGATATAATAAATAATATTTTTTACAGTTATCC
1 CACCATACTAAAGCCCAATTGCCT-GAAAATGAAATATAATAAATAATAATTTTTACAGTTATCC
* ***
68707393 CGGAAAATTAAAATATATATATTTTTTGGTG
65 CAGAAAATT--AA-ATA-ATA-TTTTTGCAC
** * *
68707424 CACCATACTAAAGCCCAATTGCCCAAAAATTG-AATATAATAAATCATATTTTTTACAGTTAT-C
1 CACCATACTAAAGCCCAATTGCCTGAAAA-TGAAATATAATAAATAATAATTTTTACAGTTATCC
* * ***
68707487 CTGAAAATATAAAAAATATTTTTGGTG
65 CAGAAAAT-TAAATAATATTTTTGCAC
* * * *
68707514 CACCATAC-AGTAGCTCAAAATGCCATGAACATGAAATATAATAAATAAT-ATTTTT-CGTAGTT
1 CACCATACTA-AAGC-CCAATTGCC-TGAAAATGAAATATAATAAATAATAATTTTTAC--AGTT
* * * *
68707576 GTCTCAAAAAATTAAAATAAATATTTTTGCAT
61 ATCCCAGAAAATT-AAAT-AATATTTTTGCAC
* * * * * *
68707608 CACCATACTCAA-TCCTATATGCCTAAAAATGAAATATAAAAAATAATAATTTTTATAGTTATCC
1 CACCATACTAAAGCCCAAT-TGCCTGAAAATGAAATATAATAAATAATAATTTTTACAGTTATCC
* *
68707672 CGGAAAATTAAATCATATTTTTGCAC
65 CAGAAAATTAAATAATATTTTTGCAC
* * ** *
68707698 CACCGTACTAAAGCTCAATTGTTTTGAAAATGAAATATAATAAATAATAATTTTTACATTTATCC
1 CACCATACTAAAGCCCAATTG-CCTGAAAATGAAATATAATAAATAATAATTTTTACAGTTATCC
* * *
68707763 CATAAAATTAAATATATATATTTTTTGTAG
65 CAGAAAATT-AA-ATA-ATA-TTTTTGCAC
* * * * * * * * *
68707793 CACCATACTCAAGTTCAAATCTCCCT-AAAATGCAATATAGTAAATAATATTTTTTTATATTTAT
1 CACCATACTAAAG-CCCAAT-TGCCTGAAAATGAAATATAATAAATAATA-ATTTTTACAGTTAT
* * **
68707857 CTC-GAAAAATTTAAAAAAATATTTATTTTAC
63 CCCAG-AAAA-TT-AAATAATATTT-TTGCAC
* * * * *
68707888 C-CCATACTCGAA-CTCAAATGTCTGAAAAT-ATAATATAATAAATAATAATTTTTACAGCTATC
1 CACCATACT-AAAGCCCAATTGCCTGAAAATGA-AATATAATAAATAATAATTTTTACAGTTATC
** ** * *
68707950 CTTGAAAA-TAAA-AA-A-AATTACAA
64 CCAGAAAATTAAATAATATTTTTGCAC
** * * * * ** * * * *
68707973 CATTATACTCAAGACAAAATGCACCAAAAATGAAATATTATTAATAAATAATTTGTACATTTATC
1 CACCATACTAAAGCCCAATTGC-CTGAAAATGAAATATAATAAAT-AATAATTTTTACAGTTATC
* *
68708038 CC-GAAATTTTAAGA-AATATTTTTG-AG
64 CCAGAAA-ATTAA-ATAATATTTTTGCAC
* ** * * * * * *
68708064 CACTATACTAAATTCCAAGTGATCC-AAAAATGAAATATAATAACTAATATTTTTTATAGTTAAC
1 CACCATACTAAAGCCCAATTG--CCTGAAAATGAAATATAATAAATAATAATTTTTACAGTTATC
* *
68708128 CCAAAAAATTAAAAAAAATATTTTTG-AC
64 CCAGAAAATT--AAATAATATTTTTGCAC
* * * * * *
68708156 GCGCTATACTCAAA-CACAAGTGCCCTAAAAATGAAATATATTAAATAATAATTTTTA
1 -CACCATACT-AAAGCCCAATTG-CCTGAAAATGAAATATAATAAATAATAATTTTTA
68708213 TAATTATCTT
Statistics
Matches: 671, Mismatches: 156, Indels: 112
0.71 0.17 0.12
Matches are distributed among these distances:
85 6 0.01
86 10 0.01
87 21 0.03
88 22 0.03
89 45 0.07
90 72 0.11
91 118 0.18
92 99 0.15
93 91 0.14
94 45 0.07
95 85 0.13
96 51 0.08
97 6 0.01
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (90 bp):
CACCATACTAAAGCCCAATTGCCTGAAAATGAAATATAATAAATAATAATTTTTACAGTTATCCC
AGAAAATTAAATAATATTTTTGCAC
Found at i:68707847 original size:95 final size:93
Alignment explanation
Indices: 68707264--68707950 Score: 395
Period size: 92 Copynumber: 7.4 Consensus size: 93
68707254 CAAGTGCCCC
* * * * *
68707264 GAAATTGAAATATAATAAATAATA-ATTTTATA-TTATCTCAAAAAATTAAAA-A-ATA-TTTTT
1 GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATTAAAATATATATTTTTT
* * * * * *
68707324 GCACCACCATAATCAAGCCCAAA-TACCT
66 GTAGCACCATACTAAAG-TCAAATTCCCT
* *
68707352 CGAAAATGAGATATAATAAATAATATTTTTTACAGTTATCCCGGAAAATTAAAATATATATATTT
1 -GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATT-AAA-ATATATATTT
* *
68707417 TTTGGT-GCACCATACTAAAGCCCAATTGCCC-
63 TTT-GTAGCACCATACTAAAGTCAAATT-CCCT
* * *
68707448 AAAAATTG-AATATAATAAATCATATTTTTTACAGTTAT-CCTGAAAATATAAAA-A-ATATTTT
1 GAAAA-TGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAAT-TAAAATATATATTTT
* * * *
68707509 TGGT-GCACCATAC-AGTAGCTCAAAATGCCAT
64 TTGTAGCACCATACTA-AAG-TC-AAATTCCCT
* *** * * * *
68707540 GAACATGAAATATAATAAATAATATTTTTCGTAGTTGTCTCAAAAAATTAAAATAAATA-TTTTT
1 GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATTAAAATATATATTTTTT
* * * ** *
68707604 GCATCACCATACTCAA-TCCTATATGCCT
66 GTAGCACCATACTAAAGTCAAAT-TCCCT
* * * * * *
68707632 AAAAATGAAATATAAAAAATAATAATTTTTATAGTTATCCCGGAAAATT-AAAT-CATA-TTTTT
1 GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATTAAAATATATATTTTTT
* * * ***
68707694 GCACCACCGTACTAAAGCTC-AATTGTTTT
66 GTAGCACCATACTAAAG-TCAAATT-CCCT
* * *
68707723 GAAAATGAAATATAATAAATAATAATTTTTACATTTATCCCATAAAATTAAATATATATATTTTT
1 GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATTAAA-ATATATATTTTT
*
68707788 TGTAGCACCATACTCAAGTTCAAATCTCCCT
65 TGTAGCACCATACTAAAG-TCAAAT-TCCCT
* * * * * *
68707819 -AAAATGCAATATAGTAAATAATATTTTTTTATATTTATCTC-GAAAAATTTAAAA-AAATATTT
1 GAAAATGAAATATAATAAATAATA-TTTTTTACAGTTATCCCAG-AAAA-TTAAAATATATATTT
* * *
68707881 ATTT-TA-CCCCATACTCGAACTCAAATGT--CT
63 -TTTGTAGCACCATACT-AAAGTCAAAT-TCCCT
* *
68707911 GAAAAT-ATAATATAATAAATAATAATTTTTACAGCTATCC
1 GAAAATGA-AATATAATAAATAATATTTTTTACAGTTATCC
68707951 TTGAAAATAA
Statistics
Matches: 465, Mismatches: 94, Indels: 75
0.73 0.15 0.12
Matches are distributed among these distances:
89 23 0.05
90 41 0.09
91 77 0.17
92 100 0.22
93 36 0.08
94 42 0.09
95 92 0.20
96 45 0.10
97 9 0.02
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.35
Consensus pattern (93 bp):
GAAAATGAAATATAATAAATAATATTTTTTACAGTTATCCCAGAAAATTAAAATATATATTTTTT
GTAGCACCATACTAAAGTCAAATTCCCT
Found at i:68707867 original size:279 final size:277
Alignment explanation
Indices: 68707264--68707950 Score: 659
Period size: 279 Copynumber: 2.5 Consensus size: 277
68707254 CAAGTGCCCC
* *
68707264 GAAATTGAAATATAATAAATAATA-ATTTTATATTATCTCAAAAAATT-AAAAAATATTTTTGCA
1 GAAAATGAAATATAATAAATAATATTTTTTATATTATCTCAAAAAATTAAAAAAATATTTTTGCA
* * * *
68707327 CCACCATAATCAAGCCCAAATACCTCGAAAATGAGATATAATAAATAATATTTTTTACAGTTATC
66 CCACCATAATCAAGCCCAAATACCTCAAAAATGAAATATAAAAAATAATAATTTTTACAGTTATC
* ***
68707392 CCGGAAAATTAAAATATATATATTTTTTGGTGCACCATACTAAAGCCCAATTGCCCAAAAATTGA
131 CCGGAAAATT-AAATATACATATTTTTTGCACCACCATACTAAAGCCCAATTGCCCAAAAATTGA
* *
68707457 ATATAATAAATCATATTTTTTACAGTTATCCTGAAAATATAAAAAATATTTTTGGTGCACCATAC
195 ATATAATAAATAATAATTTTTACAGTTATCCTGAAAATATAAAAAATATTTTTGGTGCACCATAC
**
68707522 AGTAGCTCAAAATGCCAT
260 ACAAGCTCAAAATGCCAT
* ** *
68707540 GAACATGAAATATAATAAATAATATTTTTCGTAGTTGTCTCAAAAAATTAAAATAAATATTTTTG
1 GAAAATGAAATATAATAAATAATATTTTTTATA-TTATCTCAAAAAATTAAAA-AAATATTTTTG
* * * * * * *
68707605 CATCACCATACTCAATCCTATATGCCT-AAAAATGAAATATAAAAAATAATAATTTTTATAGTTA
64 CACCACCATAATCAAGCCCAAATACCTCAAAAATGAAATATAAAAAATAATAATTTTTACAGTTA
* * ****
68707669 TCCCGGAAAATT-AA-AT-CATA-TTTTTGCACCACCGTACTAAAGCTCAATTGTTTTGAAAA-T
129 TCCCGGAAAATTAAATATACATATTTTTTGCACCACCATACTAAAGCCCAATTG-CCCAAAAATT
* *
68707729 GAAATATAATAAATAATAATTTTTACATTTATCCCAT-AAAAT-TAAATATATATATTTTTTGTA
193 G-AATATAATAAATAATAATTTTTACAGTTAT-CC-TGAAAATATAAA-A-A-ATATTTTTGGT-
* * * *
68707792 GCACCATACTCAAGTTC-AAATCTCCCT
251 GCACCATACACAAGCTCAAAAT-GCCAT
* * *
68707819 -AAAATGCAATATAGTAAATAATATTTTTTTATATTTATCTCGAAAAATTTAAAAAAATATTTAT
1 GAAAATGAAATATAATAAATAATA-TTTTTTATA-TTATCTC-AAAAAATTAAAAAAATATTT-T
** * * ** * *
68707883 TTTACC-CCATACTCGAA-CTCAAATGTCT-GAAAAT-ATAATATAATAAATAATAATTTTTACA
62 TGCACCACCATAATC-AAGCCCAAATACCTCAAAAATGA-AATATAAAAAATAATAATTTTTACA
*
68707944 GCTATCC
125 GTTATCC
68707951 TTGAAAATAA
Statistics
Matches: 337, Mismatches: 56, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
274 27 0.08
275 38 0.11
276 32 0.09
277 9 0.03
278 49 0.15
279 133 0.39
280 49 0.15
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.35
Consensus pattern (277 bp):
GAAAATGAAATATAATAAATAATATTTTTTATATTATCTCAAAAAATTAAAAAAATATTTTTGCA
CCACCATAATCAAGCCCAAATACCTCAAAAATGAAATATAAAAAATAATAATTTTTACAGTTATC
CCGGAAAATTAAATATACATATTTTTTGCACCACCATACTAAAGCCCAATTGCCCAAAAATTGAA
TATAATAAATAATAATTTTTACAGTTATCCTGAAAATATAAAAAATATTTTTGGTGCACCATACA
CAAGCTCAAAATGCCAT
Found at i:68708238 original size:93 final size:90
Alignment explanation
Indices: 68707976--68708273 Score: 230
Period size: 93 Copynumber: 3.2 Consensus size: 90
68707966 ATTACAACAT
* * * *
68707976 TATACTCAAGACA-AAATGCACCAAAAATGAAATATTATT-AATAAATAATTTGTACATTTATCC
1 TATACTCAA-ACACAAGTGC-CCAAAAATGAAATA-TATTAAAT-AATAATTTTTATAATTATCC
68708039 CG-AAA-TTTTAAGAAATATTTTTGAGCAC
62 CGAAAATTTTTAA-AAATATTTTTGAGCAC
* * * * * *
68708067 TATACT-AAATTC-CAAGTGATCCAAAAATGAAATATAATAACTAATATTTTTTATAGTTAACCC
1 TATACTCAAA--CACAAGTG-CCCAAAAATGAAATATATTAAATAATAATTTTTATAATTATCCC
* *** *
68708130 AAAAAATTAAAAAAAATATTTTTGACGCGC
63 -GAAAATTTTTAAAAATATTTTTGA-GCAC
**
68708160 TATACTCAAACACAAGTGCCCTAAAAATGAAATATATTAAATAATAATTTTTATAATTATCTTGA
1 TATACTCAAACACAAGTGCCC-AAAAATGAAATATATTAAATAATAATTTTTATAATTATCCCGA
* *
68708225 AAATTTTTTAAAAAATATTATTGCACCAC
65 AAA-TTTTT-AAAAATATTTTTG-AGCAC
* **
68708254 TGTACTCAAACTTAAGTGCC
1 TATACTCAAACACAAGTGCC
68708274 TCGGAAATAA
Statistics
Matches: 160, Mismatches: 32, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
89 1 0.01
90 21 0.13
91 27 0.17
92 22 0.14
93 54 0.34
94 34 0.21
95 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (90 bp):
TATACTCAAACACAAGTGCCCAAAAATGAAATATATTAAATAATAATTTTTATAATTATCCCGAA
AATTTTTAAAAATATTTTTGAGCAC
Found at i:68708544 original size:89 final size:90
Alignment explanation
Indices: 68708439--68709094 Score: 336
Period size: 92 Copynumber: 7.3 Consensus size: 90
68708429 AAGTGACCAA
* * * *
68708439 AAAATAAAATGTAATAAATAATAATTTTACAGCTATCCTAAAAATTTTAAGAAATATTTTTG-GG
1 AAAATGAAATATAATAAATAATAATTTTACAGTTATCCTAAAAATTTTAA-AAATATTTTTGCAG
* * *
68708503 GACCATACTCAAGCTCAAGTG-TTCG
65 CACCATACTCAAGCCCAAGTGCCTCG
* * ** * ** *
68708528 AAAATAAAATATAATAAA-AATAATTTTTATAGTTATCTCGGAAAATTTTAAAAAAAAATTAG--
1 AAAATGAAATATAATAAATAATAA-TTTTACAGTTATC-CTAAAAATTTTAAAAATATTTTTGCA
* * *
68708590 GCACTATACGCAAGCCCAAGTGCCTCA
64 GCACCATACTCAAGCCCAAGTGCCTCG
** * * * **
68708617 AAAATGAAATATTAA-AAATAATTTTTTTAAAGTTATCTTAGAATATATAAAAAAATATTTTTGC
1 AAAATGAAATA-TAATAAATAATAATTTTACAGTTATCCTA-AAAAT-TTTAAAAATATTTTTGC
* **
68708681 AGCAACATACTCAAATCCAAGTG-CTCTG
63 AGCACCATACTCAAGCCCAAGTGCCTC-G
* *
68708709 AAAATGAAATATAATAAATAATAAATTTTACAGTTAT-CTCAAAAAATTGAAAAATATTTTTGCA
1 AAAATGAAATATAATAAATAAT-AATTTTACAGTTATCCT-AAAAATTTTAAAAATATTTTTGCA
* * **
68708773 -CGACAATTCTCTTGCCCAAGTGCCTCG
64 GC-ACCATACTCAAGCCCAAGTGCCTCG
* * * * *
68708800 AAAATGAAATATAATAAATAATATTTTTTACAATTATCCTTAAAAA-ATTAAAAA-A-ATAT-CA
1 AAAATGAAATATAATAAATAATA-ATTTTACAGTTATCC-TAAAAATTTTAAAAATATTTTTGCA
* * *
68708861 CCACCACACTCAAGCCTAA------CG
64 GCACCATACTCAAGCCCAAGTGCCTCG
* * * * * *
68708882 AAAATGAAATATAACAAATAATAATTAGTACAATTATGCCGAAAAGTTTAAAAAATTATTTTTTG
1 AAAATGAAATATAATAAATAATAATT-TTACAGTTAT-CCTAAAAATTTTAAAAA-TA-TTTTTG
* * * *
68708947 -GGCACCATACTCAATCCTAAGT--CTCTA
62 CAGCACCATACTCAAGCCCAAGTGCCTC-G
* * * * * **
68708974 AAAATGAAATATAATAAATAGTTATTAATATAGTTATCCCAAAAATTGAAAAAAAAATATTTTTG
1 AAAATGAAATATAATAAATAATAATT-TTACAGTTATCCTAAAAATT---TTAAAAATATTTTTG
* * * * * * *
68709039 CACCACCAGATTCAAGCTCAACTGCCCCAAA
62 CAGCACCATACTCAAGCCCAAGTGCCTC--G
68709070 AAAAT-AAATATAA-AAA-AATAATTTT
1 AAAATGAAATATAATAAATAATAATTTT
68709095 TATAATGATC
Statistics
Matches: 430, Mismatches: 98, Indels: 75
0.71 0.16 0.12
Matches are distributed among these distances:
81 2 0.00
82 37 0.09
83 8 0.02
85 1 0.00
87 18 0.04
88 36 0.08
89 69 0.16
90 30 0.07
91 84 0.20
92 86 0.20
93 34 0.08
94 9 0.02
95 10 0.02
96 6 0.01
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.31
Consensus pattern (90 bp):
AAAATGAAATATAATAAATAATAATTTTACAGTTATCCTAAAAATTTTAAAAATATTTTTGCAGC
ACCATACTCAAGCCCAAGTGCCTCG
Found at i:68708803 original size:91 final size:91
Alignment explanation
Indices: 68708439--68708854 Score: 325
Period size: 91 Copynumber: 4.6 Consensus size: 91
68708429 AAGTGACCAA
* * * * * * * *
68708439 AAAATAAAATGTAATAAATAATA-ATTTTACAGCTATCCTAAAAATTTTAAGAAATATTTTTG-G
1 AAAATGAAATATAATAAATAATATTTTTTACAGTTATCTTAAAAA-ATTAAAAAATATTTTTGCA
* * * *
68708502 GGACCATACTCAAGCTCAAGTG-TTCG
65 GCAACATACTCAAGCCCAAGTGCCTCG
* * * * ** ** *
68708528 AAAATAAAATATAATAAA-AATAATTTTTATAGTTATCTCGGAAAATTTTAAAAAA-AAATTAG-
1 AAAATGAAATATAATAAATAATATTTTTTACAGTTATCT--TAAAAAATTAAAAAATATTTTTGC
* *
68708590 -GC-ACTATACGCAAGCCCAAGTGCCTCA
64 AGCAAC-ATACTCAAGCCCAAGTGCCTCG
* * *
68708617 AAAATGAAATATTAA-AAATAAT-TTTTTTAAAGTTATCTTAGAATATATAAAAAAATATTTTTG
1 AAAATGAAATA-TAATAAATAATATTTTTTACAGTTATCTTA-AA-AAATTAAAAAATATTTTTG
**
68708680 CAGCAACATACTCAAATCCAAGTG-CTCTG
63 CAGCAACATACTCAAGCCCAAGTGCCTC-G
** * *
68708709 AAAATGAAATATAATAAATAATAAATTTTACAGTTATCTCAAAAAATTGAAAAATATTTTTGCA-
1 AAAATGAAATATAATAAATAATATTTTTTACAGTTATCTTAAAAAATTAAAAAATATTTTTGCAG
* * **
68708773 CGACAATTCTCTTGCCCAAGTGCCTCG
66 CAAC-ATACTCAAGCCCAAGTGCCTCG
*
68708800 AAAATGAAATATAATAAATAATATTTTTTACAATTATCCTTAAAAAATTAAAAAA
1 AAAATGAAATATAATAAATAATATTTTTTACAGTTAT-CTTAAAAAATTAAAAAA
68708855 ATATCACCAC
Statistics
Matches: 260, Mismatches: 48, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
87 2 0.01
88 22 0.08
89 70 0.27
90 21 0.08
91 75 0.29
92 54 0.21
93 16 0.06
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (91 bp):
AAAATGAAATATAATAAATAATATTTTTTACAGTTATCTTAAAAAATTAAAAAATATTTTTGCAG
CAACATACTCAAGCCCAAGTGCCTCG
Found at i:68710506 original size:13 final size:13
Alignment explanation
Indices: 68710490--68710540 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
68710480 TTTAAACCAG
68710490 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
68710503 ACTTTTCCATAA-C
1 ACTTTT-CAAAAGC
* * *
68710516 ATTTTTTAAAAAC
1 ACTTTTCAAAAGC
68710529 ACTTTTCAAAAG
1 ACTTTTCAAAAG
68710541 TATTACTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
12 3 0.10
13 22 0.76
14 4 0.14
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:68711413 original size:2 final size:2
Alignment explanation
Indices: 68711408--68711452 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
68711398 TCTGTTTTAT
68711408 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
68711450 TC T
1 TC T
68711453 TTTAATTACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:68714967 original size:45 final size:46
Alignment explanation
Indices: 68714863--68715038 Score: 273
Period size: 46 Copynumber: 3.8 Consensus size: 46
68714853 ACATTGCTAT
* *
68714863 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
68714909 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTAC-TTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * * *
68714954 AACTCAGTATGGTTTTCTTTACTGAAACACCACATCTACTTTTGAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
68715000 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTAC
68715039 GTCAATTCAT
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 41 0.35
46 76 0.65
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:68715018 original size:91 final size:91
Alignment explanation
Indices: 68714863--68715038 Score: 280
Period size: 91 Copynumber: 1.9 Consensus size: 91
68714853 ACATTGCTAT
* *
68714863 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAACACCACACCTACTTTTCACAACTCAGTATGGTTTTCTT
*
68714928 CATTGAAACACCATACCTACTTTCAC
66 CACTGAAACACCATACCTACTTTCAC
* * * *
68714954 AACTCAGTATGGTTTTCTTTACTGAAACACCACATCTACTTTTGACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAACACCACACCTACTTTTCACAACTCAGTATGGTTTTCTT
*
68715019 CACTGAAATACCATACCTAC
66 CACTGAAACACCATACCTAC
68715039 GTCAATTCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 77 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (91 bp):
AACTCAGTATGGTTTTCTTCACGGAAACACCACACCTACTTTTCACAACTCAGTATGGTTTTCTT
CACTGAAACACCATACCTACTTTCAC
Found at i:68716280 original size:16 final size:17
Alignment explanation
Indices: 68716234--68716280 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
68716224 AAATTCTTTT
68716234 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
68716251 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
68716268 TAATTCA-AAAATT
1 TAAATCACAAAATT
68716281 ATTCTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 6 0.21
17 22 0.79
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:68717348 original size:33 final size:33
Alignment explanation
Indices: 68717298--68717372 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 33
68717288 AAACTAATCC
* *
68717298 TCTCTCAAATTTCCTCTC-AATTTCTTCTAAATT
1 TCTCTC-AATTTCCTCTCAAATTCCTTCAAAATT
*
68717331 TCCTCTCAATTTGCTCTCAAATTCCTTCAAAATT
1 T-CTCTCAATTTCCTCTCAAATTCCTTCAAAATT
68717365 TCTCTCAA
1 TCTCTCAA
68717373 ATCCATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 18 0.49
34 19 0.51
ACGTcount: A:0.25, C:0.29, G:0.01, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTCCTCTCAAATTCCTTCAAAATT
Found at i:68717355 original size:22 final size:22
Alignment explanation
Indices: 68717298--68717374 Score: 97
Period size: 22 Copynumber: 3.5 Consensus size: 22
68717288 AAACTAATCC
68717298 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAATTTCCTCTCAATT
68717320 TCT-TCTAAATTTCCTCTCAATT
1 TCTCTC-AAATTTCCTCTCAATT
68717342 TGCTCTCAAA-TTCCT-TCAAAATT
1 T-CTCTCAAATTTCCTCTC--AATT
68717365 TCTCTCAAAT
1 TCTCTCAAAT
68717375 CCATATTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.08
22 33 0.67
23 10 0.20
24 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.01, T:0.44
Consensus pattern (22 bp):
TCTCTCAAATTTCCTCTCAATT
Found at i:68717374 original size:11 final size:11
Alignment explanation
Indices: 68717298--68717374 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
68717288 AAACTAATCC
68717298 TCTCTCAAATT
1 TCTCTCAAATT
68717309 TCCTCTC-AATT
1 T-CTCTCAAATT
68717320 TCT-TCTAAATT
1 TCTCTC-AAATT
68717331 TCCTCTC-AATT
1 T-CTCTCAAATT
68717342 TGCTCTCAAATT
1 T-CTCTCAAATT
*
68717354 CCT-TCAAAATT
1 TCTCTC-AAATT
68717365 TCTCTCAAAT
1 TCTCTCAAAT
68717375 CCATATTTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 2 0.04
10 4 0.07
11 34 0.62
12 13 0.24
13 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.01, T:0.44
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:68728773 original size:40 final size:39
Alignment explanation
Indices: 68728710--68728922 Score: 156
Period size: 40 Copynumber: 5.3 Consensus size: 39
68728700 AGCTTTAGTG
* * *
68728710 GCATTAGCGACGCTTTTTAAAAAATGCCACAATAGATTGA
1 GCATTAGCGGCGC-TTTTGAAAAACGCCACAATAGATTGA
* * **
68728750 GCATTAGTGGCGCTATTTGAAAAACACCACTTTAGATTGA
1 GCATTAGCGGCGCT-TTTGAAAAACGCCACAATAGATTGA
* * ** * *
68728790 GCATTAGCGACGCTTTTCAGAAAACGCTGCAAAAAATTTGAGCA
1 GCATTAGCGGCGCTTTTGA-AAAACGCCACAATAGA-TT--G-A
* * *
68728834 GCATTAGCGGCGCTTTTTAAAAATGCCACAATAGATCGA
1 GCATTAGCGGCGCTTTTGAAAAACGCCACAATAGATTGA
* * * * * *
68728873 GTATTAGTGGTGCTATGTGAAAAACGCCACTATAGATCGA
1 GCATTAGCGGCGCT-TTTGAAAAACGCCACAATAGATTGA
68728913 GCATTAGCGG
1 GCATTAGCGG
68728923 TGCATTTCGG
Statistics
Matches: 132, Mismatches: 34, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
39 17 0.13
40 82 0.62
41 2 0.02
42 1 0.01
43 12 0.09
44 18 0.14
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (39 bp):
GCATTAGCGGCGCTTTTGAAAAACGCCACAATAGATTGA
Found at i:68728936 original size:123 final size:124
Alignment explanation
Indices: 68728710--68729050 Score: 378
Period size: 123 Copynumber: 2.7 Consensus size: 124
68728700 AGCTTTAGTG
* *
68728710 GCATTAGCGACGCTTTTTAAAAAATGCCACAATAGATTGAGCATTAGTGGCGCTATTTGAAAAAC
1 GCATTAGCGACGCTTTTTAAAAAATGCCACAATAGATCGAGCATTAGTGGCGCTATGTGAAAAAC
* * *
68728775 ACCACTTTAGATTGAGCATTAGCGACGCTTTTCAGAAAACGCTGCAAAAAATTTGAGCA
66 ACCACTATAGATCGAGCATTAGCGACGCATTTCAGAAAACGCTGCAAAAAATTTGAGCA
* * *
68728834 GCATTAGCGGCGCTTTTT-AAAAATGCCACAATAGATCGAGTATTAGTGGTGCTATGTGAAAAAC
1 GCATTAGCGACGCTTTTTAAAAAATGCCACAATAGATCGAGCATTAGTGGCGCTATGTGAAAAAC
* ** *
68728898 GCCACTATAGATCGAGCATTAGCGGTGCATTTCGGAAAACGCTGCAAAAAATTTGAAGGACTTTT
66 ACCACTATAGATCGAGCATTAGCGACGCATTTCAGAAAACGCTGCAAAAAATTTG-A-G-C----
68728963 AATA
124 ---A
* * * * * ** * *
68728967 ACATTAGCGGCGCTTTTTTAAGAAACGCCACAATAGATCAAGCATTAGCAGCACTATTTGAAAAA
1 GCATTAGCGACGC-TTTTTAAAAAATGCCACAATAGATCGAGCATTAGTGGCGCTATGTGAAAAA
*
68729032 CACCGCTATAGATCGAGCA
65 CACCACTATAGATCGAGCA
68729051 AAACAAGGAA
Statistics
Matches: 181, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
123 90 0.50
124 18 0.10
125 1 0.01
126 1 0.01
133 13 0.07
134 5 0.03
135 53 0.29
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (124 bp):
GCATTAGCGACGCTTTTTAAAAAATGCCACAATAGATCGAGCATTAGTGGCGCTATGTGAAAAAC
ACCACTATAGATCGAGCATTAGCGACGCATTTCAGAAAACGCTGCAAAAAATTTGAGCA
Found at i:68729875 original size:18 final size:18
Alignment explanation
Indices: 68729852--68729894 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
68729842 ACCCAATCTA
**
68729852 AACCCAAGTATTCAACCC
1 AACCCAAGTACCCAACCC
*
68729870 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
68729888 AACCCAA
1 AACCCAA
68729895 TCATAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:68730016 original size:9 final size:9
Alignment explanation
Indices: 68730002--68730042 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
68729992 GTAGTGATTC
68730002 AATTTGGTT
1 AATTTGGTT
68730011 AATTTGGTT
1 AATTTGGTT
* *
68730020 AATTCGGGT
1 AATTTGGTT
*
68730029 AATTCGGTT
1 AATTTGGTT
68730038 AATTT
1 AATTT
68730043 TTAACCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (9 bp):
AATTTGGTT
Found at i:68733365 original size:13 final size:14
Alignment explanation
Indices: 68733341--68733373 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
68733331 ACCCAAAACA
*
68733341 CTAAATATTGAACT
1 CTAAACATTGAACT
68733355 C-AAACATTGAACT
1 CTAAACATTGAACT
68733368 CTAAAC
1 CTAAAC
68733374 CCCAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.27
Consensus pattern (14 bp):
CTAAACATTGAACT
Found at i:68740618 original size:30 final size:30
Alignment explanation
Indices: 68740561--68740633 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
68740551 TAACTTTTAT
**
68740561 AAATTACAATTTGACCCCCACAATTTCTCA
1 AAATTACAATTTGACCCAAACAATTTCTCA
* * * *
68740591 AAATTACATTTTGACCCAAATATTTTCTCT
1 AAATTACAATTTGACCCAAACAATTTCTCA
*
68740621 AAATTACACTTTG
1 AAATTACAATTTG
68740634 GCCCCAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (30 bp):
AAATTACAATTTGACCCAAACAATTTCTCA
Found at i:68740832 original size:18 final size:17
Alignment explanation
Indices: 68740803--68740843 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
68740793 CCAAAATTTT
68740803 AAAAAAAAAAGAGA-AA
1 AAAAAAAAAAGAGAGAA
68740819 AAAAAACAACAAGAGAGAA
1 AAAAAA-AA-AAGAGAGAA
68740838 AAAAAA
1 AAAAAA
68740844 TCAGCAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.27
17 2 0.09
18 6 0.27
19 8 0.36
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAGAGAGAA
Found at i:68741197 original size:7 final size:7
Alignment explanation
Indices: 68741139--68741199 Score: 50
Period size: 7 Copynumber: 8.0 Consensus size: 7
68741129 GGAGGGGAAC
*
68741139 GAAAAGA
1 GAAAAAA
*
68741146 GAAAGAA
1 GAAAAAA
68741153 GAAAAAGA
1 GAAAAA-A
*
68741161 AAAAAAA
1 GAAAAAA
68741168 CGAAAAAGAGA
1 -G-AAAA-A-A
68741179 GAAAAAA
1 GAAAAAA
68741186 GAAAAAA
1 GAAAAAA
68741193 GAAAAAA
1 GAAAAAA
68741200 ATCTAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
7 26 0.59
8 7 0.16
9 8 0.18
10 2 0.05
11 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:68741208 original size:16 final size:16
Alignment explanation
Indices: 68741154--68741200 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
68741144 GAGAAAGAAG
68741154 AAAAAGAAAAAAAACGA
1 AAAAAGAAAAAAAAC-A
* *
68741171 AAAAGAGAGAAAAAAGA
1 AAAA-AGAAAAAAAACA
68741188 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
68741201 TCTAAAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 9 0.35
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAAAACA
Found at i:68741373 original size:14 final size:14
Alignment explanation
Indices: 68741354--68741395 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
68741344 TTGACCCAAT
68741354 AGGCCCAGTAGCGC
1 AGGCCCAGTAGCGC
68741368 AGGCCCA--AGCAGC
1 AGGCCCAGTAGC-GC
68741381 AGGCCCAGTAGCGC
1 AGGCCCAGTAGCGC
68741395 A
1 A
68741396 CTGGTAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.12
13 9 0.36
14 10 0.40
15 3 0.12
ACGTcount: A:0.26, C:0.36, G:0.33, T:0.05
Consensus pattern (14 bp):
AGGCCCAGTAGCGC
Found at i:68741509 original size:19 final size:18
Alignment explanation
Indices: 68741485--68741553 Score: 68
Period size: 21 Copynumber: 3.5 Consensus size: 18
68741475 CAGCAGAGAG
68741485 GAAAAAAAAGGAAAAGAAA
1 GAAAAAAAAGGAAAA-AAA
68741504 GAAAAAAAAGACGAAGAAAAA
1 GAAAAAAAAG--GAA-AAAAA
68741525 -AAGAAAAAAGGAAAAAAGAA
1 GAA-AAAAAAGG-AAAAA-AA
68741545 GAAAAAAAA
1 GAAAAAAAA
68741554 AAGAAAAAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
19 14 0.33
20 12 0.28
21 15 0.35
22 2 0.05
ACGTcount: A:0.80, C:0.01, G:0.19, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAGGAAAAAAA
Found at i:68741525 original size:14 final size:14
Alignment explanation
Indices: 68741506--68741558 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
68741496 AAAAGAAAGA
*
68741506 AAAAAAAGACGAAG
1 AAAAAAAGAAGAAG
*
68741520 AAAAAAAGAAAAAAG
1 AAAAAAAG-AAGAAG
* *
68741535 GAAAAAAGAAGAAA
1 AAAAAAAGAAGAAG
68741549 AAAAAAAGAA
1 AAAAAAAGAA
68741559 AAAGGTTCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAG
Found at i:68741533 original size:7 final size:7
Alignment explanation
Indices: 68741521--68741561 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
68741511 AAGACGAAGA
68741521 AAAAAAG
1 AAAAAAG
68741528 AAAAAAGG
1 AAAAAA-G
68741536 AAAAAAG
1 AAAAAAG
68741543 AAGAAAA-
1 AA-AAAAG
68741550 AAAAAAG
1 AAAAAAG
68741557 AAAAA
1 AAAAA
68741562 GGTTCAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 4 0.13
7 16 0.52
8 11 0.35
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:68741560 original size:19 final size:18
Alignment explanation
Indices: 68741486--68741560 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 18
68741476 AGCAGAGAGG
*
68741486 AAAAAAAAGGAAAAGAAA
1 AAAAAAAAAGAAAAGAAA
* *
68741504 GAAAAAAAAGACGAAGAAAA
1 AAAAAAAAAGA-AAAG-AAA
68741524 AAAGAAAAAAGGAAAAAAGAAGA
1 AAA-AAAAAA-G--AAAAGAA-A
68741547 AAAAAAAAAGAAAA
1 AAAAAAAAAGAAAA
68741561 AGGTTCAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
18 9 0.20
19 7 0.16
20 5 0.11
21 7 0.16
22 9 0.20
23 7 0.16
24 1 0.02
ACGTcount: A:0.81, C:0.01, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAGAAA
Found at i:68741732 original size:19 final size:19
Alignment explanation
Indices: 68741710--68741751 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
68741700 TATATTTGTA
*
68741710 TTTATAT-TTTTAATTTAAT
1 TTTATATATTTTAA-ATAAT
*
68741729 TTTATTTATTTTAAATAAT
1 TTTATATATTTTAAATAAT
68741748 TTTA
1 TTTA
68741752 ATAAATAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTATATATTTTAAATAAT
Found at i:68741889 original size:18 final size:18
Alignment explanation
Indices: 68741864--68741955 Score: 73
Period size: 18 Copynumber: 4.9 Consensus size: 18
68741854 ATCGAAAATA
68741864 TTCAAAAATTTTCGTGTC
1 TTCAAAAATTTTCGTGTC
68741882 TTCGAAAAAAAATTTTCGTGT-
1 TTC----AAAAATTTTCGTGTC
* *
68741903 TTC-GAAATTTTCATGTC
1 TTCAAAAATTTTCGTGTC
*
68741920 TTCAAAAAAATTTCGTG-C
1 TTC-AAAAATTTTCGTGTC
*
68741938 TTTCAAAAATATTCGTGT
1 -TTCAAAAATTTTCGTGT
68741956 TTTTAAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
16 11 0.19
17 3 0.05
18 15 0.26
19 12 0.21
21 3 0.05
22 14 0.24
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (18 bp):
TTCAAAAATTTTCGTGTC
Found at i:68741893 original size:22 final size:21
Alignment explanation
Indices: 68741867--68741909 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
68741857 GAAAATATTC
68741867 AAAAATTTTCGTGTCTTCGAAA
1 AAAAATTTTCGTGT-TTCGAAA
68741889 AAAAATTTTCGTGTTTCGAAA
1 AAAAATTTTCGTGTTTCGAAA
68741910 TTTTCATGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (21 bp):
AAAAATTTTCGTGTTTCGAAA
Found at i:68741911 original size:38 final size:37
Alignment explanation
Indices: 68741864--68741967 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 37
68741854 ATCGAAAATA
68741864 TTCAAAAATTTTCGTGTCTTCGAAAAAAAATTTTCGTG-T
1 TTCAAAAATTTTCGTGTCTTC--AAAAAAA-TTTCGTGCT
* *
68741903 TTC-GAAATTTTCATGTCTTCAAAAAAATTTCGTGCT
1 TTCAAAAATTTTCGTGTCTTCAAAAAAATTTCGTGCT
* * *
68741939 TTCAAAAATATTCGTGTTTTTAAAAAAAT
1 TTCAAAAATTTTCGTGTCTTCAAAAAAAT
68741968 AAGGCTACAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
35 7 0.12
36 11 0.20
37 20 0.36
38 15 0.27
39 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (37 bp):
TTCAAAAATTTTCGTGTCTTCAAAAAAATTTCGTGCT
Found at i:68741942 original size:19 final size:19
Alignment explanation
Indices: 68741920--68741967 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
68741910 TTTTCATGTC
68741920 TTCAAAAAAATTTCGTGCT
1 TTCAAAAAAATTTCGTGCT
* *
68741939 TTCAAAAATA-TTCGTGTT
1 TTCAAAAAAATTTCGTGCT
*
68741957 TTTAAAAAAAT
1 TTCAAAAAAAT
68741968 AAGGCTACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (19 bp):
TTCAAAAAAATTTCGTGCT
Found at i:68742129 original size:20 final size:20
Alignment explanation
Indices: 68742069--68742171 Score: 69
Period size: 20 Copynumber: 5.4 Consensus size: 20
68742059 ATATAAAAAT
68742069 AAAAAAAATTT-GTG-TTTC
1 AAAAAAAATTTCGTGTTTTC
*
68742087 ---AAAAATTCCAGTG-TTTC
1 AAAAAAAATTTC-GTGTTTTC
*
68742104 -AAAAAATTTTCGTGTTTTC
1 AAAAAAAATTTCGTGTTTTC
* *
68742123 AAAAAAAATTCCCT-TGTTTC
1 AAAAAAAATTTCGTGT-TTTC
* *
68742143 AAAAAAAATCTCGGGTTTTC
1 AAAAAAAATTTCGTGTTTTC
68742163 AAAACAAAA
1 AAAA-AAAA
68742172 ATTCTCATGT
Statistics
Matches: 66, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
15 7 0.11
17 7 0.11
18 3 0.05
19 12 0.18
20 32 0.48
21 5 0.08
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.34
Consensus pattern (20 bp):
AAAAAAAATTTCGTGTTTTC
Found at i:68742130 original size:21 final size:21
Alignment explanation
Indices: 68742104--68742183 Score: 83
Period size: 20 Copynumber: 3.8 Consensus size: 21
68742094 CCAGTGTTTC
*
68742104 AAAAAATTTTCGTGTTTTCAA
1 AAAAAATTCTCGTGTTTTCAA
* *
68742125 AAAAAATTCCCTTG-TTTCAA
1 AAAAAATTCTCGTGTTTTCAA
*
68742145 AAAAAA-TCTCGGGTTTTCAAA
1 AAAAAATTCTCGTGTTTTC-AA
*
68742166 ACAAAAATTCTCATGTTT
1 A-AAAAATTCTCGTGTTT
68742184 CAATCGGATC
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.09
20 16 0.34
21 14 0.30
22 5 0.11
23 8 0.17
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (21 bp):
AAAAAATTCTCGTGTTTTCAA
Found at i:68743980 original size:26 final size:27
Alignment explanation
Indices: 68743943--68743999 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
68743933 GTAGTGCTTC
*
68743943 AATTCGGTTAATTCTGGTAA-TCTGGTT
1 AATTCGGTTAATTCGGGTAATTC-GGTT
68743970 AATTC-GTTAATTCGGGTAATTCGGTT
1 AATTCGGTTAATTCGGGTAATTCGGTT
68743996 AATT
1 AATT
68744000 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.44
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATTCGGTT
Done.