Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 219 of 222
Found at i:69117947 original size:21 final size:21
Alignment explanation
Indices: 69117923--69117984 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
69117913 GTAAGCTTTT
69117923 AAGAAGAAATGAAGCATCTAA
1 AAGAAGAAATGAAGCATCTAA
* * **
69117944 AAGATG--ACG-AGC-T-TTT
1 AAGAAGAAATGAAGCATCTAA
69117960 AAGAAGAAATGAAGCATCTAA
1 AAGAAGAAATGAAGCATCTAA
69117981 AAGA
1 AAGA
69117985 TGACGAAGTA
Statistics
Matches: 28, Mismatches: 8, Indels: 10
0.61 0.17 0.22
Matches are distributed among these distances:
16 6 0.21
17 1 0.04
18 5 0.18
19 5 0.18
20 1 0.04
21 10 0.36
ACGTcount: A:0.52, C:0.10, G:0.21, T:0.18
Consensus pattern (21 bp):
AAGAAGAAATGAAGCATCTAA
Found at i:69117958 original size:37 final size:37
Alignment explanation
Indices: 69117916--69117990 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
69117906 GGTTTAAGTA
69117916 AGCTTTTAAGAAGAAATGAAGCATCTAAAAGATGACG
1 AGCTTTTAAGAAGAAATGAAGCATCTAAAAGATGACG
69117953 AGCTTTTAAGAAGAAATGAAGCATCTAAAAGATGACG
1 AGCTTTTAAGAAGAAATGAAGCATCTAAAAGATGACG
69117990 A
1 A
69117991 AGTATACAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (37 bp):
AGCTTTTAAGAAGAAATGAAGCATCTAAAAGATGACG
Found at i:69122695 original size:25 final size:25
Alignment explanation
Indices: 69122644--69122695 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
69122634 AAATACTATC
* * *
69122644 AAAATCAATCCATTAATCAATATAA
1 AAAAACAATCAATTAATCAATAAAA
* *
69122669 AAAAACAATCAATTAATTATTAAAA
1 AAAAACAATCAATTAATCAATAAAA
69122694 AA
1 AA
69122696 TTCATCACCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.27
Consensus pattern (25 bp):
AAAAACAATCAATTAATCAATAAAA
Found at i:69125993 original size:29 final size:30
Alignment explanation
Indices: 69125936--69126000 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
69125926 TAATCTTATG
* * * *
69125936 AAAAAAGTTGACTTTGACCATTAACCTTTT
1 AAAAAAGTTAAATTTAACCATCAACCTTTT
69125966 AAAAAAGTTAAATTTAACCATCAA-CTTTT
1 AAAAAAGTTAAATTTAACCATCAACCTTTT
*
69125995 CAAAAA
1 AAAAAA
69126001 TAGTCGATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAAAAGTTAAATTTAACCATCAACCTTTT
Found at i:69127642 original size:188 final size:188
Alignment explanation
Indices: 69127421--69127798 Score: 666
Period size: 188 Copynumber: 2.0 Consensus size: 188
69127411 AAATAATATT
69127421 ATTTTGAAGGTGTTTTTTATGACTGGTCCATATACATCCGAATGAGTTACACGTGTTTTTTATGC
1 ATTTTGAAGGTGTTTTTTATGACTGGTCCATATACATCCGAATGAGTTACACGTGTTTTTTATGC
* *
69127486 CAATCACGCTAGTTTTTAATAGCAAAAATGGTTGAAATTTTAACAAAAAGGACAAATTAACTATT
66 CAATCACGCTAGTTTTTAACAGCAAAAATGGTTAAAATTTTAACAAAAAGGACAAATTAACTATT
* *
69127551 TGATCCAACATATAATGACCTCTAATTTATTTATTTTTAAGTAAAGAGGCAATATGTA
131 TGATCCAACATATAAGGACCTCTAATTTATTTATTTTTAAGCAAAGAGGCAATATGTA
* *
69127609 ATTTTGAAGGTGTTTTTTATGACTGGTCCATATAGATCCGAATGAGTTACACGTGTTTTTTATGT
1 ATTTTGAAGGTGTTTTTTATGACTGGTCCATATACATCCGAATGAGTTACACGTGTTTTTTATGC
*
69127674 CAATCACGCTAGTTTTTAACAGCAAAAATGGTTAAAATTTTAACAAAAATGACAAATTAACTATT
66 CAATCACGCTAGTTTTTAACAGCAAAAATGGTTAAAATTTTAACAAAAAGGACAAATTAACTATT
** *
69127739 TGATCTGACATATAAGGACCTCTAATTTATTTATTTTTAAGCAAAGAGTCAATATGTA
131 TGATCCAACATATAAGGACCTCTAATTTATTTATTTTTAAGCAAAGAGGCAATATGTA
69127797 AT
1 AT
69127799 CTTACTTCTA
Statistics
Matches: 180, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
188 180 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (188 bp):
ATTTTGAAGGTGTTTTTTATGACTGGTCCATATACATCCGAATGAGTTACACGTGTTTTTTATGC
CAATCACGCTAGTTTTTAACAGCAAAAATGGTTAAAATTTTAACAAAAAGGACAAATTAACTATT
TGATCCAACATATAAGGACCTCTAATTTATTTATTTTTAAGCAAAGAGGCAATATGTA
Found at i:69135564 original size:24 final size:23
Alignment explanation
Indices: 69135522--69135584 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
69135512 AACCGATTTA
**
69135522 TAAACTAATAAATGCTAAATATAT
1 TAAA-TAATAAATATTAAATATAT
*
69135546 TATAATAATAAATATTAAATATTT
1 TA-AATAATAAATATTAAATATAT
* *
69135570 TAAAAAATATATATT
1 TAAATAATAAATATT
69135585 TTATTTAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
23 11 0.33
24 20 0.61
25 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.40
Consensus pattern (23 bp):
TAAATAATAAATATTAAATATAT
Found at i:69143946 original size:22 final size:21
Alignment explanation
Indices: 69143915--69143964 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
69143905 CCAATTATGG
*
69143915 AATAAATTTATTGCTTTGTAA
1 AATAAATTTATTGCTTTATAA
*
69143936 AATAATATTTATTTCTTTATAA
1 AATAA-ATTTATTGCTTTATAA
69143958 AATAAAT
1 AATAAAT
69143965 GAGTTTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (21 bp):
AATAAATTTATTGCTTTATAA
Found at i:69147811 original size:15 final size:16
Alignment explanation
Indices: 69147774--69147815 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
69147764 AAGTTTGAAC
69147774 AACTCGAACACAAAAT
1 AACTCGAACACAAAAT
*
69147790 AATCTCGAATA-AAAAT
1 AA-CTCGAACACAAAAT
69147806 AACTCGAACA
1 AACTCGAACA
69147816 AGTAATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 7 0.30
16 9 0.39
17 7 0.30
ACGTcount: A:0.55, C:0.21, G:0.07, T:0.17
Consensus pattern (16 bp):
AACTCGAACACAAAAT
Found at i:69149351 original size:42 final size:43
Alignment explanation
Indices: 69149228--69149358 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 43
69149218 CAGTGAAATT
*
69149228 ATAAAGCCTTGCCTCCCTCAGTTGCAGTGGAGCA-AGT-TAAAG
1 ATAAAGCCTTGCCTCCCTCAGTTGCAGTGGAGCAGA-TCGAAAG
** * * * *
69149270 ATAGCAAATCTTGCCTTCCTGCA-TCGACAGCGAAGCAGATCGAAA-
1 ATA--AAGCCTTGCCTCCCT-CAGTTG-CAGTGGAGCAGATCGAAAG
69149315 ATAAAGCCTTGCCTCCCTCAGTTGCAGTGGAGCAGATC-AAAG
1 ATAAAGCCTTGCCTCCCTCAGTTGCAGTGGAGCAGATCGAAAG
69149357 AT
1 AT
69149359 GGTGTATTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
41 3 0.04
42 19 0.28
43 14 0.21
44 14 0.21
45 14 0.21
46 4 0.06
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (43 bp):
ATAAAGCCTTGCCTCCCTCAGTTGCAGTGGAGCAGATCGAAAG
Found at i:69150357 original size:88 final size:89
Alignment explanation
Indices: 69149455--69150363 Score: 280
Period size: 88 Copynumber: 10.3 Consensus size: 89
69149445 ATTATAGATC
* * **
69149455 TTATCTCCCTCA-GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTACAG
1 TTATCTCCCT-AGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAG
*
69149519 TGGAGTACATTGAAGCCAATA-ATT
65 TGGAGTACATTGAAGCCAGTACATT
* * * * *** * * *
69149543 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG-T--A
1 TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAG--GTTACA
* * * *** **
69149605 GTGGAGCAGATCGAAGATGGTGGATT
64 GTGGAGTACATTGAAGCCAGTACATT
* * * * *** * * *
69149631 TTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCCTG-GG-CAGC
1 TTATCTCCCT-AGG-CAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTA-C
* * * *
69149692 AGTGGAATAGATTGAAG--ATTACAGATC
63 AGTGGAGTACATTGAAGCCAGTAC--ATT
* * * * ***
69149719 TTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACGGATTTTACCTCCCTGAGGTTACAGT
1 TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGT
*
69149784 GGAGTATATTGAAGCCAGTA-ATT
66 GGAGTACATTGAAGCCAGTACATT
* * * * * * * *** * *
69149807 CTATTTCCCTGGGCAACAGTGGAATAGATTGAATATTACAGATCTTATCTCCCT-A-G--ACAGT
1 TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACA--
* * *** *
69149868 GGTGGAGTAGATCGAAGATGGTAGATT
64 -GTGGAGTACATTGAAGCCAGTACATT
* * * * * *** * * * *
69149895 TTACCTCCCTGAGGTTA-CAATGGAGTACATTGAAGCCAGTA-ATTCTATCTCTCTG-GG-CAGC
1 TTATCTCCCT-AGG-CAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTA-C
* * * * *
69149956 AGTGGAATAGATTGAA--TATTACAGATC
63 AGTGGAGTACATTGAAGCCAGTAC--ATT
* *
69149983 TTATCTCCCTAGACAGTAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGT
1 TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGT
69150048 GGAGTACATTGAAGCCAGTA-ATT
66 GGAGTACATTGAAGCCAGTACATT
* * * * * *** * * *
69150071 CTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG-T--A
1 TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAG--GTTACA
* * ** *** * *
69150133 GTGGAGCAGATCAAAGATGGCAGATT
64 GTGGAGTACATTGAAGCCAGTACATT
* * * * * * *** * * **
69150159 TTACCTCCTTGAGGTTA-CAGTGGAGCACATTGAAGCCAGTA-ATTCTATCTCCCTG-GGCAACA
1 TTATCTCCCT-AGG-CAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACA
* * * *
69150221 GTGGAATATATTGAA--TATTACATAT
64 GTGGAGTACATTGAAGCCAGTACAT-T
* ** *
69150246 CTTATCTCCCTAGACAGTGGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAA
1 -TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAG
69150311 TGGAGTACATTGAAGCCAGTA-ATT
65 TGGAGTACATTGAAGCCAGTACATT
*
69150335 TTATCTCCCTAGGCAGCAGTGGAATAGAT
1 TTATCTCCCTAGGCAGCAGTGGAGTAGAT
69150364 TGAATATTAC
Statistics
Matches: 573, Mismatches: 198, Indels: 100
0.66 0.23 0.11
Matches are distributed among these distances:
84 3 0.01
85 2 0.00
86 12 0.02
87 103 0.18
88 322 0.56
89 110 0.19
90 10 0.02
91 11 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (89 bp):
TTATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGT
GGAGTACATTGAAGCCAGTACATT
Found at i:69150509 original size:132 final size:132
Alignment explanation
Indices: 69149340--69150501 Score: 1839
Period size: 132 Copynumber: 8.8 Consensus size: 132
69149330 CCTCAGTTGC
*
69149340 AGTGGAGCAGATCAAAGATGGT-GTATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCGAAGATGGTAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
* *
69149404 AGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTATAGATCTTATCTCCCTCAG-
65 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT-AGA
69149468 CAGT
129 CAGT
**
69149472 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
*
69149537 ATAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA-AGC
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGA-C
69149601 AGT
130 AGT
*
69149604 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
69149669 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA-AGC
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGA-C
69149733 AGT
130 AGT
* *** *
69149736 AGTGGAGCAGATCAAAGATGACGGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* * *
69149801 GTAATTCTATTTCCCTGGGCAACAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAGACA
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACA
69149866 GT
131 GT
* * *
69149868 GGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* *
69149933 GTAATTCTATCTCTCTGGGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAGACA
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACA
69149998 GT
131 GT
*
69150000 AGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
*
69150065 GTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA-AGC
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGA-C
69150129 AGT
130 AGT
* * * *
69150132 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGAGGTTACAGTGGAGCACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* * * *
69150197 GTAATTCTATCTCCCTGGGCAACAGTGGAATATATTGAATATTACATATCTTATCTCCCTAGACA
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACA
69150262 GT
131 GT
* * *
69150264 GGTGGAGTAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* * *
69150329 GTAATTTTATCTCCCTAGGCAGCAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAGACA
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACA
69150394 GT
131 GT
* * **
69150396 AGTGGAGTAGATCGAAGATGGTAGATTTTACCTCTCTGAGGTTACAGTGGAGTATGTTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* * * * *
69150461 GTAATTCTAACTCCCTGGTCGGCAGTGGAATCGATCGAAGA
66 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGA
69150502 AAGCAGATAT
Statistics
Matches: 961, Mismatches: 63, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
131 2 0.00
132 956 0.99
133 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGACA
GT
Found at i:69150556 original size:44 final size:44
Alignment explanation
Indices: 69150493--69150678 Score: 228
Period size: 44 Copynumber: 4.2 Consensus size: 44
69150483 CAGTGGAATC
* *
69150493 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAATA
1 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCATGAAGTA
* *
69150537 GATCGAAGAAAGCAAATATTGTCTTCATGTATTGGCATGGAGTA
1 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCATGAAGTA
* * *
69150581 AATCGAAGAAAGCAGATCTTGTCTTCTTGTATTGGCATGAAGTA
1 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCATGAAGTA
* * * *** **
69150625 GATCAAAGAGAGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTA
1 GATCGAAGAAAGCAGATATTGTCTTCATGTATTGG-CATGAAGTA
69150670 GATCGAAGA
1 GATCGAAGA
69150679 TACAAGTCTT
Statistics
Matches: 123, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
44 108 0.88
45 15 0.12
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (44 bp):
GATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCATGAAGTA
Found at i:69150909 original size:124 final size:125
Alignment explanation
Indices: 69150685--69150930 Score: 370
Period size: 124 Copynumber: 2.0 Consensus size: 125
69150675 AAGATACAAG
* * * *
69150685 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGACAGAAATAACCGGTCCTATCTCTTTGGAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAATAACCAGTCCTATCTCCTTGAAGTTGCA
* * *
69150750 ATGGAGTGGATTAAAACTGCTGATCTTATCTCTCTGA-AGTTGCAG-AGAGCAGATCATA
66 ATGGAGTGGATTAAAACTACGGATCTCATCTCTCTGATAGTTGCAGTAGAGCAGATCATA
* * *
69150808 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGTGACCAAGTCTTATCTCCTTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAATAACC-AGTCCTATCTCCTTGAAGTTGC
*
69150873 AATGGAGTGGATTAAAACTACGGATCTCATCTCTCTGATATTTGCAGTAGAGCAGATC
65 AATGGAGTGGATTAAAACTACGGATCTCATCTCTCTGATAGTTGCAGTAGAGCAGATC
69150931 GCATCAGATT
Statistics
Matches: 109, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
123 39 0.36
124 53 0.49
125 7 0.06
126 10 0.09
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (125 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAATAACCAGTCCTATCTCCTTGAAGTTGCA
ATGGAGTGGATTAAAACTACGGATCTCATCTCTCTGATAGTTGCAGTAGAGCAGATCATA
Found at i:69152397 original size:15 final size:15
Alignment explanation
Indices: 69152372--69152421 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
69152362 TCCCATTATT
*
69152372 TATTA-TTATTGTTA
1 TATTATTTATTGTCA
69152386 TATTATTTATTGTCA
1 TATTATTTATTGTCA
69152401 TCATTA-TTATT-TC-
1 T-ATTATTTATTGTCA
69152414 TATTATTT
1 TATTATTT
69152422 TTATATTGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
12 4 0.12
13 3 0.09
14 7 0.22
15 14 0.44
16 4 0.12
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (15 bp):
TATTATTTATTGTCA
Found at i:69154161 original size:15 final size:16
Alignment explanation
Indices: 69154124--69154165 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
69154114 AAGTTTGCGC
69154124 AACTCGAACACAAAAT
1 AACTCGAACACAAAAT
*
69154140 AATCTCGAATA-AAAAT
1 AA-CTCGAACACAAAAT
69154156 AACTCGAACA
1 AACTCGAACA
69154166 AGTAATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 7 0.30
16 9 0.39
17 7 0.30
ACGTcount: A:0.55, C:0.21, G:0.07, T:0.17
Consensus pattern (16 bp):
AACTCGAACACAAAAT
Found at i:69156640 original size:6 final size:6
Alignment explanation
Indices: 69156631--69156671 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
69156621 TTAAGGTTTT
* * *
69156631 GTATAC GTATAC GTATAC GTATTC GTATAT GTATAT GTATA
1 GTATAC GTATAC GTATAC GTATAC GTATAC GTATAC GTATA
69156672 TCTTTGATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (6 bp):
GTATAC
Found at i:69158290 original size:21 final size:20
Alignment explanation
Indices: 69158264--69158315 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
69158254 AGCAGTGACA
* *
69158264 GTGAGATTAATTATTGTAGTG
1 GTGAGATTAA-TACTGTAGCG
69158285 GTGAGATTCAATACTGTAGCG
1 GTGAGATT-AATACTGTAGCG
69158306 GTGAGATTAA
1 GTGAGATTAA
69158316 AAACAACGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.35
Consensus pattern (20 bp):
GTGAGATTAATACTGTAGCG
Found at i:69159621 original size:19 final size:19
Alignment explanation
Indices: 69159597--69159637 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
69159587 CGCCGTTCCC
69159597 GTTCATGTATAATATTTAA
1 GTTCATGTATAATATTTAA
69159616 GTTCATGTATAATATTTAA
1 GTTCATGTATAATATTTAA
69159635 GTT
1 GTT
69159638 ATTGGGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (19 bp):
GTTCATGTATAATATTTAA
Found at i:69162223 original size:24 final size:24
Alignment explanation
Indices: 69162196--69162244 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
69162186 AATGATGTGC
*
69162196 TTAATTATTTTTAATTGTTCACTT
1 TTAATTATTCTTAATTGTTCACTT
*
69162220 TTAATTATTCTTAATTGTTGACTT
1 TTAATTATTCTTAATTGTTCACTT
69162244 T
1 T
69162245 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.61
Consensus pattern (24 bp):
TTAATTATTCTTAATTGTTCACTT
Found at i:69175774 original size:11 final size:11
Alignment explanation
Indices: 69175758--69175782 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69175748 CAAACAAGGG
69175758 AAAATGCCTGT
1 AAAATGCCTGT
69175769 AAAATGCCTGT
1 AAAATGCCTGT
69175780 AAA
1 AAA
69175783 TGTACTTGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (11 bp):
AAAATGCCTGT
Found at i:69179855 original size:2 final size:2
Alignment explanation
Indices: 69179850--69179877 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69179840 CGCGCGCGCG
69179850 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
69179878 GACATACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:69179886 original size:4 final size:4
Alignment explanation
Indices: 69179879--69179941 Score: 126
Period size: 4 Copynumber: 15.8 Consensus size: 4
69179869 ACACACACAG
69179879 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
69179927 ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACA
69179942 GTCTATGTTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 59 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:69183106 original size:3 final size:3
Alignment explanation
Indices: 69183098--69183133 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
69183088 TTGTTGCTTC
69183098 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
69183134 TCAAGCTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:69183694 original size:5 final size:5
Alignment explanation
Indices: 69183686--69183712 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
69183676 TTCTCTGGTC
69183686 TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TT
69183713 AACTACTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:69186102 original size:16 final size:16
Alignment explanation
Indices: 69186081--69186111 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69186071 TACTATTTTT
*
69186081 ATAAAAAAATTCGAAA
1 ATAAAAAAATACGAAA
69186097 ATAAAAAAATACGAA
1 ATAAAAAAATACGAA
69186112 TAAAGGGGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.16
Consensus pattern (16 bp):
ATAAAAAAATACGAAA
Found at i:69187840 original size:13 final size:13
Alignment explanation
Indices: 69187822--69187848 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69187812 CGTTAATTTT
69187822 TAAATCTAAAAAA
1 TAAATCTAAAAAA
69187835 TAAATCTAAAAAA
1 TAAATCTAAAAAA
69187848 T
1 T
69187849 TTCGACCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAATCTAAAAAA
Found at i:69188782 original size:19 final size:18
Alignment explanation
Indices: 69188747--69188782 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
69188737 ATTATTGTTT
*
69188747 TATTTTTTATTTTTAATA
1 TATTTTTTATTTATAATA
69188765 TATTTTTTAGTTTATAAT
1 TATTTTTTA-TTTATAAT
69188783 TATCCTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TATTTTTTATTTATAATA
Found at i:69193161 original size:16 final size:16
Alignment explanation
Indices: 69193140--69193184 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
69193130 CTAATAAACA
*
69193140 AAAATATCTCAAACTT
1 AAAATAACTCAAACTT
* *
69193156 AAAATAACTCGAATTT
1 AAAATAACTCAAACTT
69193172 AAAATAA-TCAAAC
1 AAAATAACTCAAAC
69193185 AAGAAATTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.27
Consensus pattern (16 bp):
AAAATAACTCAAACTT
Found at i:69194138 original size:20 final size:20
Alignment explanation
Indices: 69194087--69194134 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
69194077 TACAAAATAA
69194087 TCAAAATAATTTTCATAAAT
1 TCAAAATAATTTTCATAAAT
* *
69194107 TTAAAATAATTTTTA-AAAT
1 TCAAAATAATTTTCATAAAT
69194126 TCAAAATAA
1 TCAAAATAA
69194135 ATTTAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
TCAAAATAATTTTCATAAAT
Found at i:69200120 original size:11 final size:12
Alignment explanation
Indices: 69200106--69200143 Score: 62
Period size: 11 Copynumber: 3.3 Consensus size: 12
69200096 AAGAAAAAAA
69200106 GAAGAGAG-AGG
1 GAAGAGAGAAGG
69200117 GAAGAGAGAAGG
1 GAAGAGAGAAGG
69200129 G-AGAGAGAAGG
1 GAAGAGAGAAGG
69200140 GAAG
1 GAAG
69200144 GGGAAGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:69200133 original size:22 final size:22
Alignment explanation
Indices: 69200108--69200151 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
69200098 GAAAAAAAGA
69200108 AGAGAG-AGGGAAGAGAGAAGGG
1 AGAGAGAAGGGAAG-GAGAAGGG
*
69200130 AGAGAGAAGGGAAGGGGAAGGG
1 AGAGAGAAGGGAAGGAGAAGGG
69200152 GAATCCGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (22 bp):
AGAGAGAAGGGAAGGAGAAGGG
Found at i:69208490 original size:25 final size:26
Alignment explanation
Indices: 69208431--69208490 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
69208421 GTTACTTAAT
* *
69208431 AAATAATTATTATTTTTGTTTACCAAA
1 AAATAATTATTATTTTTG-TAAACAAA
*
69208458 ATAA-AATTATTATTTTTG-AAAGAAA
1 A-AATAATTATTATTTTTGTAAACAAA
69208483 AAATAATT
1 AAATAATT
69208491 TAGTAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 2 0.07
25 9 0.32
27 15 0.54
28 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (26 bp):
AAATAATTATTATTTTTGTAAACAAA
Found at i:69209733 original size:4 final size:4
Alignment explanation
Indices: 69209724--69209751 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
69209714 AAAAGGCTAA
69209724 TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG
69209752 AAACAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:69209901 original size:4 final size:4
Alignment explanation
Indices: 69209892--69209932 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
69209882 CCTCTCTCAG
*
69209892 GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
69209933 CGCGCGCGCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:69210003 original size:4 final size:4
Alignment explanation
Indices: 69209983--69210024 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
69209973 TCTGTCTGTG
* * *
69209983 TGTA TGTG TGCA TGTA TGTA TGTA TGTA CGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
69210025 AATGAATGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (4 bp):
TGTA
Found at i:69210408 original size:4 final size:4
Alignment explanation
Indices: 69210401--69210443 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
69210391 GTAATATTTC
69210401 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
69210444 CTTACAAGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:69217920 original size:15 final size:15
Alignment explanation
Indices: 69217889--69217922 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69217879 AATTATGGTG
69217889 CTTTTTTTTTTCTTT
1 CTTTTTTTTTTCTTT
69217904 CTTTCTTTTTTTC-TT
1 CTTT-TTTTTTTCTTT
69217919 CTTT
1 CTTT
69217923 AAGAGTTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
CTTTTTTTTTTCTTT
Found at i:69226219 original size:17 final size:18
Alignment explanation
Indices: 69226177--69226220 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
69226167 CGAGATTAAA
* *
69226177 TTATATATTTTTATGATT
1 TTATATATTTTAATGAGT
69226195 TTAT-TATTTTAAT-AGT
1 TTATATATTTTAATGAGT
69226211 TTATATATTT
1 TTATATATTT
69226221 ATAACATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 6 0.26
17 13 0.57
18 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTATATATTTTAATGAGT
Found at i:69240722 original size:41 final size:41
Alignment explanation
Indices: 69240676--69240759 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
69240666 TAAAAAATAT
* * * *
69240676 TTATATTAAAAAACATTACCATTAATATAATAAATGTTTTA
1 TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
69240717 TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
1 TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
69240758 TT
1 TT
69240760 GTATCAAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.50, C:0.10, G:0.01, T:0.39
Consensus pattern (41 bp):
TTATATTAAAAAACACTACCATAAACATAATAAATATTTTA
Found at i:69244510 original size:38 final size:38
Alignment explanation
Indices: 69244467--69244544 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
69244457 TATGAGGATT
69244467 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
1 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
69244505 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
1 AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
69244543 AA
1 AA
69244545 AGTTTCACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (38 bp):
AATTTCCACATCCCTTTACAATTCGTTATGAGCAAATC
Found at i:69260502 original size:10 final size:10
Alignment explanation
Indices: 69260484--69260516 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
69260474 TTTTCAATTC
*
69260484 TCATACAATA
1 TCATCCAATA
69260494 TCATCCAATA
1 TCATCCAATA
69260504 TCATCCAATA
1 TCATCCAATA
69260514 TCA
1 TCA
69260517 ATCATAGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.30
Consensus pattern (10 bp):
TCATCCAATA
Found at i:69283545 original size:103 final size:103
Alignment explanation
Indices: 69283366--69283568 Score: 388
Period size: 103 Copynumber: 2.0 Consensus size: 103
69283356 AGTAATATGT
69283366 ACATACATATTATCAGTTGAAAACACTGACCTCTCTAGCAACGGAAGTGGCAACCATATTGGAAG
1 ACATACATATTATCAGTTGAAAACACTGACCTCTCTAGCAACGGAAGTGGCAACCATATTGGAAG
*
69283431 TAGGAACAGAAAGGAACATAAAAACATAGCTCATACAA
66 TAGCAACAGAAAGGAACATAAAAACATAGCTCATACAA
*
69283469 ACATACATATTATCAGTTGAAAACACTGACCTCTCTAGCAAGGGAAGTGGCAACCATATTGGAAG
1 ACATACATATTATCAGTTGAAAACACTGACCTCTCTAGCAACGGAAGTGGCAACCATATTGGAAG
69283534 TAGCAACAGAAAGGAACATAAAAACATAGCTCATA
66 TAGCAACAGAAAGGAACATAAAAACATAGCTCATA
69283569 TAATCACAAA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (103 bp):
ACATACATATTATCAGTTGAAAACACTGACCTCTCTAGCAACGGAAGTGGCAACCATATTGGAAG
TAGCAACAGAAAGGAACATAAAAACATAGCTCATACAA
Found at i:69289996 original size:31 final size:31
Alignment explanation
Indices: 69289961--69290029 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 31
69289951 ACCAAAAAAA
*
69289961 TATTAAGTGT-AGTAGAGCACGCTAAAATTAG
1 TATTAAGTGTAAG-AGAGCACACTAAAATTAG
* * *
69289992 TATTAATTTTAAAGAGTGCACACTAAAATTAG
1 TATTAAGTGT-AAGAGAGCACACTAAAATTAG
69290024 TATTAA
1 TATTAA
69290030 AATTTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 8 0.25
32 22 0.69
33 2 0.06
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (31 bp):
TATTAAGTGTAAGAGAGCACACTAAAATTAG
Found at i:69294197 original size:15 final size:16
Alignment explanation
Indices: 69294177--69294207 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69294167 TCTTCTCCAT
69294177 CACATG-ATAGATAAA
1 CACATGAATAGATAAA
69294192 CACATGAATAGATAAA
1 CACATGAATAGATAAA
69294208 ATCAGGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (16 bp):
CACATGAATAGATAAA
Found at i:69297451 original size:7 final size:7
Alignment explanation
Indices: 69297441--69297479 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
69297431 GACTTGGGAC
69297441 TTTGGTA
1 TTTGGTA
69297448 TTTGGTA
1 TTTGGTA
69297455 TTTGGTA
1 TTTGGTA
69297462 TTTGGTA
1 TTTGGTA
69297469 TTTGGATA
1 TTTGG-TA
69297477 TTT
1 TTT
69297480 CTATTTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (7 bp):
TTTGGTA
Found at i:69297484 original size:14 final size:14
Alignment explanation
Indices: 69297441--69297485 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
69297431 GACTTGGGAC
*
69297441 TTTGGTATTTGGTA
1 TTTGGTATTTGCTA
*
69297455 TTTGGTATTTGGTA
1 TTTGGTATTTGCTA
69297469 TTTGGATATTT-CTA
1 TTTGG-TATTTGCTA
69297483 TTT
1 TTT
69297486 CAAACTCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 24 0.83
15 5 0.17
ACGTcount: A:0.16, C:0.02, G:0.22, T:0.60
Consensus pattern (14 bp):
TTTGGTATTTGCTA
Found at i:69297484 original size:21 final size:21
Alignment explanation
Indices: 69297441--69297485 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
69297431 GACTTGGGAC
*
69297441 TTTGGTATTTGGTATTTGGTA
1 TTTGGTATTTGGTATTTGCTA
69297462 TTTGGTATTTGGATATTT-CTA
1 TTTGGTATTTGG-TATTTGCTA
69297483 TTT
1 TTT
69297486 CAAACTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.16, C:0.02, G:0.22, T:0.60
Consensus pattern (21 bp):
TTTGGTATTTGGTATTTGCTA
Found at i:69300368 original size:6 final size:6
Alignment explanation
Indices: 69300357--69300387 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
69300347 TCAAGTATAC
69300357 ATACAT ATACAT ATACAT ATACAT ATACAT A
1 ATACAT ATACAT ATACAT ATACAT ATACAT A
69300388 ACCCAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACAT
Found at i:69318151 original size:33 final size:31
Alignment explanation
Indices: 69318104--69318166 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 31
69318094 TATTTTAAAT
*
69318104 AAATTTAATCTTTTTAG-TTCAAACCTATTTTTC
1 AAATTTAATATTTTT-GCTT-AAACCT-TTTTTC
*
69318137 AAATTTACTATTTTTGCTTAAACCTTTTTT
1 AAATTTAATATTTTTGCTTAAACCTTTTTT
69318167 ATATATTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 5 0.19
32 7 0.26
33 15 0.56
ACGTcount: A:0.29, C:0.14, G:0.03, T:0.54
Consensus pattern (31 bp):
AAATTTAATATTTTTGCTTAAACCTTTTTTC
Found at i:69318450 original size:14 final size:14
Alignment explanation
Indices: 69318427--69318457 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
69318417 TTAAGATTAG
69318427 TATTTATTTAAAAA
1 TATTTATTTAAAAA
*
69318441 TATTTTTTTAAAAA
1 TATTTATTTAAAAA
69318455 TAT
1 TAT
69318458 AATACACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTTATTTAAAAA
Found at i:69319446 original size:30 final size:28
Alignment explanation
Indices: 69319410--69319478 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
69319400 GTTTAAATTT
*
69319410 TTTTTTAAAATTTTAAAAGATTTAATTA-AA
1 TTTTTTAAAA-TTT--AAGATTTAATAATAA
*
69319440 TTTTTTACAAATTTAAGGTTTAATAATAA
1 TTTTTTA-AAATTTAAGATTTAATAATAA
69319469 TTTTTTAAAA
1 TTTTTTAAAA
69319479 AATTGAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 13 0.37
29 9 0.26
30 10 0.29
31 3 0.09
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (28 bp):
TTTTTTAAAATTTAAGATTTAATAATAA
Found at i:69319577 original size:31 final size:31
Alignment explanation
Indices: 69319540--69319601 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
69319530 AATTTATAAA
*
69319540 AAAAAATTT-AAAGAGTTTAACTAAAACTTTT
1 AAAAAATTTGAAAGA-TTTAACTAAAAATTTT
* *
69319571 AAAAAATTTGAATGATTTAATTAAAAATTTT
1 AAAAAATTTGAAAGATTTAACTAAAAATTTT
69319602 GATTGCTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (31 bp):
AAAAAATTTGAAAGATTTAACTAAAAATTTT
Found at i:69321508 original size:17 final size:17
Alignment explanation
Indices: 69321486--69321521 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69321476 TGGAGTTTGC
*
69321486 ATTATAGGAAGGTACCA
1 ATTATAGGAAGGGACCA
*
69321503 ATTATATGAAGGGACCA
1 ATTATAGGAAGGGACCA
69321520 AT
1 AT
69321522 CGTTATAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (17 bp):
ATTATAGGAAGGGACCA
Found at i:69322382 original size:19 final size:20
Alignment explanation
Indices: 69322353--69322391 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
69322343 CATATTTTTT
*
69322353 TAAATAAATAATTAAGAAAA
1 TAAATAAATAATAAAGAAAA
69322373 TAAA-AAATAATAAAGAAAA
1 TAAATAAATAATAAAGAAAA
69322392 AAAGTAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
TAAATAAATAATAAAGAAAA
Found at i:69322704 original size:3 final size:3
Alignment explanation
Indices: 69322696--69322742 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
69322686 CCTACTTTCA
* * *
69322696 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC ATA TTC TTC ATC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
69322743 TATCAGGTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:69323312 original size:21 final size:21
Alignment explanation
Indices: 69323289--69323327 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69323279 TTTTCTTGTT
*
69323289 TTTTC-ATGCATTTTTTTGAA
1 TTTTCAATGCATTCTTTTGAA
69323309 TTTTCAATGCATTCTTTTG
1 TTTTCAATGCATTCTTTTG
69323328 CCGGCGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (21 bp):
TTTTCAATGCATTCTTTTGAA
Found at i:69334447 original size:19 final size:17
Alignment explanation
Indices: 69334416--69334462 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 17
69334406 TCCAGAAATT
69334416 AAAAAAAGAAAAATTCAG
1 AAAAAAAGAAAAATT-AG
*
69334434 AAAAATAAGTAAAATTAG
1 AAAAA-AAGAAAAATTAG
69334452 -AAAAAAGAAAA
1 AAAAAAAGAAAA
69334463 GAAAAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 6 0.23
17 4 0.15
18 7 0.27
19 9 0.35
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (17 bp):
AAAAAAAGAAAAATTAG
Found at i:69347199 original size:21 final size:21
Alignment explanation
Indices: 69347136--69347200 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
69347126 GCTTTACTAT
* *
69347136 CCTCCTCTATCTCCTCTGTA-
1 CCTCCTCTGTCTCCTCTGCAG
*
69347156 --TCCTCCGTCTCCTCTGC-G
1 CCTCCTCTGTCTCCTCTGCAG
69347174 ACCTCCTCTGTCTCCTCTGCAG
1 -CCTCCTCTGTCTCCTCTGCAG
69347196 CCTCC
1 CCTCC
69347201 AATTCCAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
18 14 0.39
21 21 0.58
22 1 0.03
ACGTcount: A:0.06, C:0.49, G:0.11, T:0.34
Consensus pattern (21 bp):
CCTCCTCTGTCTCCTCTGCAG
Found at i:69357521 original size:21 final size:21
Alignment explanation
Indices: 69357492--69357543 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
69357482 TTTTCACTTT
*
69357492 TAATTATAATCATTAAAATAA
1 TAATAATAATCATTAAAATAA
* * *
69357513 TAATAATAATTATTATATTAA
1 TAATAATAATCATTAAAATAA
*
69357534 CAATAATAAT
1 TAATAATAAT
69357544 AAAATTTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATAATAATCATTAAAATAA
Found at i:69357555 original size:24 final size:26
Alignment explanation
Indices: 69357492--69357554 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
69357482 TTTTCACTTT
*
69357492 TAATTATAATCATTAAAATAATAATAA
1 TAATTATTAT-ATTAAAATAATAATAA
69357519 TAATTATTATATTAACAATAATAATAA
1 TAATTATTATATTAA-AATAATAATAA
*
69357546 -AATTTTTAT
1 TAATTATTAT
69357555 TCAATTCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (26 bp):
TAATTATTATATTAAAATAATAATAA
Found at i:69358366 original size:5 final size:5
Alignment explanation
Indices: 69358358--69358405 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
69358348 TTTTTTTTTT
*
69358358 TAATA TAATA CAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
69358406 AGCATAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:69363571 original size:18 final size:20
Alignment explanation
Indices: 69363533--69363570 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69363523 TTTGTTTTAG
69363533 TTTAAATATATTATTAAAAA
1 TTTAAATATATTATTAAAAA
*
69363553 TTTAAATATCTT-TTAAAA
1 TTTAAATATATTATTAAAA
69363571 TGTTCTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAATATATTATTAAAAA
Found at i:69369675 original size:257 final size:257
Alignment explanation
Indices: 69369219--69369737 Score: 867
Period size: 257 Copynumber: 2.0 Consensus size: 257
69369209 TTGTCACTTT
69369219 TCAATTTTAAAGTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
1 TCAATTTTAAAGTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
* * * *
69369284 GTGTTGAATTTTTCTCAATGACACTAATATGTGAATAATTATTTACTATATTCTTTAGTGATAAC
66 GTGTTGAATCTTTCTCAATGACACCAATATGTGAATAACTATTTACTATATTCTTTAGGGATAAC
* *
69369349 TATTCATATCCAGTTGGAGTTGAAGTAATCATTACCACAATAGTGTCTTCAAGTACAGGATATTG
131 TATTCATATCCAGTTGGAGTTGAAGTAATCATTACCACAATAATGTCTTCAAGTACAGAATATTG
* *
69369414 ATGATGTAGAAAAAGGCAATGTCTTGTTAAACTATTGTCACCTACTATATTTGCTCAACTCA
196 ATGATGTAGAAAAAGACAATGTCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACTCA
* *
69369476 TCAATTTTAAATTGAAACAAAGACTGTGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
1 TCAATTTTAAAGTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
* * *
69369541 GTGTTGAATCTTTCTCATTGACACCAATATTTGAATAACTATTTACTATATTCTTTAGGGATAAT
66 GTGTTGAATCTTTCTCAATGACACCAATATGTGAATAACTATTTACTATATTCTTTAGGGATAAC
* * * ** *
69369606 TATTCATATCCGGTTGGATTTGTAGTAATCATTATTACAATAATGTGTTCAAGTACAGAATATTG
131 TATTCATATCCAGTTGGAGTTGAAGTAATCATTACCACAATAATGTCTTCAAGTACAGAATATTG
69369671 ATGATGTAGAAAAAGACAATGTCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACTCA
196 ATGATGTAGAAAAAGACAATGTCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACTCA
69369733 TCAAT
1 TCAAT
69369738 GTTTTGCTAT
Statistics
Matches: 243, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
257 243 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (257 bp):
TCAATTTTAAAGTGAAACAAAGACTATGGGGCATAGTTTTATGACAGTTTGCTTAATTAGATTCA
GTGTTGAATCTTTCTCAATGACACCAATATGTGAATAACTATTTACTATATTCTTTAGGGATAAC
TATTCATATCCAGTTGGAGTTGAAGTAATCATTACCACAATAATGTCTTCAAGTACAGAATATTG
ATGATGTAGAAAAAGACAATGTCTTGTTAAACTATTGTCACCCACTATATTTGCTCAACTCA
Found at i:69378031 original size:29 final size:31
Alignment explanation
Indices: 69377976--69378034 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
69377966 AGAGGTGAGA
69377976 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
*
69378007 TGGG-AGGGAGTAAAAATTTT-GGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
69378035 ATAAAAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 15 0.56
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:69395301 original size:27 final size:27
Alignment explanation
Indices: 69395262--69395337 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
69395252 TAGTATTGGC
*
69395262 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
* *
69395289 GCCTATCTAGGAGGCACCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
69395316 GCCTATCTGGGAGGTGCCAATG
1 GCCTATCTGGGAGGCGCCAATG
69395338 CTCTGATTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.18, C:0.21, G:0.37, T:0.24
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:69395378 original size:19 final size:19
Alignment explanation
Indices: 69395354--69395394 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
69395344 TTTTTTCGGG
*
69395354 TTTAGGGTTATGTTATAAA
1 TTTAGGATTATGTTATAAA
69395373 TTTAGGATTATGTTATAAA
1 TTTAGGATTATGTTATAAA
69395392 TTT
1 TTT
69395395 TTGTGTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (19 bp):
TTTAGGATTATGTTATAAA
Found at i:69395635 original size:19 final size:19
Alignment explanation
Indices: 69395603--69395650 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
69395593 ATTCATACAA
69395603 ATTAT-TTA-AAATTTAGG
1 ATTATGTTATAAATTTAGG
69395620 ATTATGTTATAAATTTAGG
1 ATTATGTTATAAATTTAGG
69395639 ATTATGTTATAA
1 ATTATGTTATAA
69395651 TTTTTTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.17
18 3 0.10
19 21 0.72
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (19 bp):
ATTATGTTATAAATTTAGG
Found at i:69395822 original size:260 final size:260
Alignment explanation
Indices: 69395354--69395859 Score: 949
Period size: 260 Copynumber: 1.9 Consensus size: 260
69395344 TTTTTTCGGG
* *
69395354 TTTAGGGTTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAACATT
1 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
69395419 TAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTACTAATAAATTTATAACATAATCCTA
66 TAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTACTAATAAATTTATAACATAATCCTA
*
69395484 ATTTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA
131 AATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA
*
69395549 TATCCCGACATTACAATATTCATACAAAATTACAATATTACAATATTCATACAAATTATTTAAAA
196 TATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATACAAATTATTTAAAA
*
69395614 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAATTTTTTGTGTTTGTAATTATTTAAAATT
1 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
*
69395679 TAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTACTAATAAATTTATAACATAATCTTA
66 TAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTACTAATAAATTTATAACATAATCCTA
*
69395744 AATTACTAACAAATTAATTATAAAATAATTTCAATATTCATACAAAAAATTACAATATTACAATA
131 AATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA
69395809 TATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATA
196 TATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATA
69395860 TAAAATTGCA
Statistics
Matches: 239, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
260 239 1.00
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.40
Consensus pattern (260 bp):
TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
TAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTACTAATAAATTTATAACATAATCCTA
AATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA
TATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATACAAATTATTTAAAA
Found at i:69395854 original size:27 final size:27
Alignment explanation
Indices: 69395818--69395874 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
69395808 ATATCCCGAC
69395818 ATTACAATATTCACACAAAATTACAAT
1 ATTACAATATTCACACAAAATTACAAT
* * *
69395845 ATTACAATATTCATATAAAATTGCAAT
1 ATTACAATATTCACACAAAATTACAAT
69395872 ATT
1 ATT
69395875 TTTTTGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (27 bp):
ATTACAATATTCACACAAAATTACAAT
Found at i:69395940 original size:22 final size:22
Alignment explanation
Indices: 69395915--69396001 Score: 120
Period size: 22 Copynumber: 3.7 Consensus size: 22
69395905 TCTATATTTA
69395915 GTATGAATATTGTAATTTTTTT
1 GTATGAATATTGTAATTTTTTT
69395937 GTATGAATATTGTAATATTATAATTTT
1 GTATGAATATTGT-A-ATT-T--TTTT
*
69395964 GTATGAATATTGCAATTTTTTT
1 GTATGAATATTGTAATTTTTTT
69395986 GTATGAATATTGTAAT
1 GTATGAATATTGTAAT
69396002 ATTGTAATAT
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
22 32 0.55
23 1 0.02
24 4 0.07
25 4 0.07
26 1 0.02
27 16 0.28
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (22 bp):
GTATGAATATTGTAATTTTTTT
Found at i:69395969 original size:49 final size:49
Alignment explanation
Indices: 69395910--69396009 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
69395900 GATTATCTAT
*
69395910 ATTTAGTATGAATATTGTAATTTTTTTGTATGAATATTGTAATATTATA
1 ATTTAGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTATA
* *
69395959 ATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTGTA
1 ATTTAGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTATA
69396008 AT
1 AT
69396010 ATTATAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (49 bp):
ATTTAGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTATA
Found at i:69396004 original size:8 final size:8
Alignment explanation
Indices: 69395991--69396062 Score: 54
Period size: 8 Copynumber: 8.4 Consensus size: 8
69395981 TTTTTGTATG
69395991 AATATTGT
1 AATATTGT
69395999 AATATTGT
1 AATATTGT
*
69396007 AATATTAT
1 AATATTGT
*
69396015 AATTTTGTAT
1 AATATTG--T
69396025 GAATATTGT
1 -AATATTGT
* * *
69396034 AATGTCGGG
1 AATAT-TGT
69396043 ATATATTGT
1 A-ATATTGT
69396052 AATATTGT
1 AATATTGT
69396060 AAT
1 AAT
69396063 TTTTTGTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
8 34 0.69
9 5 0.10
10 4 0.08
11 6 0.12
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.47
Consensus pattern (8 bp):
AATATTGT
Found at i:69397104 original size:85 final size:85
Alignment explanation
Indices: 69396961--69397130 Score: 331
Period size: 85 Copynumber: 2.0 Consensus size: 85
69396951 ATTAATCCTC
*
69396961 GTAAAATAATAAGGATGTTGGTCGTACTTCGAAAGTTTTATTTCATTTGCACATCGTTGAACTCA
1 GTAAAATAATAAGGATGTTGGTCATACTTCGAAAGTTTTATTTCATTTGCACATCGTTGAACTCA
69397026 AACCCATACTCTATAACATT
66 AACCCATACTCTATAACATT
69397046 GTAAAATAATAAGGATGTTGGTCATACTTCGAAAGTTTTATTTCATTTGCACATCGTTGAACTCA
1 GTAAAATAATAAGGATGTTGGTCATACTTCGAAAGTTTTATTTCATTTGCACATCGTTGAACTCA
69397111 AACCCATACTCTATAACATT
66 AACCCATACTCTATAACATT
69397131 ATAGAGCATT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (85 bp):
GTAAAATAATAAGGATGTTGGTCATACTTCGAAAGTTTTATTTCATTTGCACATCGTTGAACTCA
AACCCATACTCTATAACATT
Found at i:69404324 original size:29 final size:29
Alignment explanation
Indices: 69404291--69404351 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
69404281 TCTAAAAAGT
69404291 GTAAGAACTAAATTCCGAATGTACGAATA
1 GTAAGAACTAAATTCCGAATGTACGAATA
69404320 GTAAGAACTAAATTCCGAATGTACGAATA
1 GTAAGAACTAAATTCCGAATGTACGAATA
69404349 GTA
1 GTA
69404352 CAAAAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (29 bp):
GTAAGAACTAAATTCCGAATGTACGAATA
Found at i:69406714 original size:14 final size:14
Alignment explanation
Indices: 69406695--69406724 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69406685 TGGGTTTAAA
69406695 AATTAAAAAAAAAT
1 AATTAAAAAAAAAT
*
69406709 AATTAAAAATAAAT
1 AATTAAAAAAAAAT
69406723 AA
1 AA
69406725 AACATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AATTAAAAAAAAAT
Found at i:69415116 original size:30 final size:29
Alignment explanation
Indices: 69415065--69415122 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
69415055 GCCATTTAAG
**
69415065 TTTTGGGGTTTGCTTAAAATTTTCAAAAT
1 TTTTGGGGTTTAATTAAAATTTTCAAAAT
* *
69415094 TTTTGGGGGTTTAATTAGAATTTTTAAAA
1 TTTT-GGGGTTTAATTAAAATTTTCAAAA
69415123 ATTATGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.29, C:0.03, G:0.19, T:0.48
Consensus pattern (29 bp):
TTTTGGGGTTTAATTAAAATTTTCAAAAT
Found at i:69419073 original size:14 final size:13
Alignment explanation
Indices: 69419048--69419077 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
69419038 TTAATTTAAG
69419048 TTTAAATTTAATT
1 TTTAAATTTAATT
69419061 TTTAAATTTTAATT
1 TTTAAA-TTTAATT
69419075 TTT
1 TTT
69419078 TAGTGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAAATTTAATT
Found at i:69429647 original size:31 final size:31
Alignment explanation
Indices: 69429566--69429647 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
69429556 AATTAAAGGA
69429566 TTAATATATC-ATTTGGTACCTATATTTGGTT
1 TTAATAT-TCAATTTGGTACCTATATTTGGTT
* ** *
69429597 TTAATATTCAAATCAGTACCTATGTTTGGTT
1 TTAATATTCAATTTGGTACCTATATTTGGTT
*
69429628 TTAGTATTCAATTTGGTACC
1 TTAATATTCAATTTGGTACC
69429648 CAAACTAAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 2 0.05
31 40 0.95
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (31 bp):
TTAATATTCAATTTGGTACCTATATTTGGTT
Found at i:69431472 original size:17 final size:18
Alignment explanation
Indices: 69431440--69431478 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
69431430 AGGAAACAAT
*
69431440 TAATAGTACCATTAAAAA
1 TAATAGTACAATTAAAAA
69431458 TAATAGTA-AATTAAAAA
1 TAATAGTACAATTAAAAA
69431475 -AATA
1 TAATA
69431479 TTATTCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
TAATAGTACAATTAAAAA
Found at i:69440358 original size:21 final size:21
Alignment explanation
Indices: 69440334--69440374 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69440324 TCAAATTTTT
*
69440334 TATATTTTAATTAAAGTAAAC
1 TATAATTTAATTAAAGTAAAC
*
69440355 TATAATTTAATTAAATTAAA
1 TATAATTTAATTAAAGTAAA
69440375 TTTTATAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAATTTAATTAAAGTAAAC
Found at i:69440386 original size:21 final size:21
Alignment explanation
Indices: 69440362--69440410 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
69440352 AACTATAATT
69440362 TAATTAAAT-TAAATTTTATAG
1 TAATTAAATGT-AATTTTATAG
* * *
69440383 TAATTCAATGTAATTTTTTTG
1 TAATTAAATGTAATTTTATAG
69440404 TAATTAA
1 TAATTAA
69440411 TATTTCATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (21 bp):
TAATTAAATGTAATTTTATAG
Found at i:69448129 original size:69 final size:69
Alignment explanation
Indices: 69448018--69448154 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 69
69448008 TTTCTATCCA
* * *
69448018 GTTATCACGTTCAAGCTCTCATATGAGAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
1 GTTATCAAGTTCAAGCTCTCATATAAAAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
69448083 GTAG
66 GTAG
*
69448087 GTTATCAAGTTCAAGCTCTTATATAAAAATAAG-TGTCTAATTTAAGCCCCAATGTGAAGACATT
1 GTTATCAAGTTCAAGCTCTCATATAAAAAT-AGTTGTCTAATTTAAGCCCCAATGTGAAGACATT
69448151 TGTA
65 TGTA
69448155 AGGATTAACT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 61 0.97
70 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (69 bp):
GTTATCAAGTTCAAGCTCTCATATAAAAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
GTAG
Found at i:69453281 original size:3 final size:3
Alignment explanation
Indices: 69453273--69453318 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
69453263 AAGTTATGGT
69453273 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
69453319 CCATTAGAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:69454053 original size:31 final size:30
Alignment explanation
Indices: 69454018--69454120 Score: 86
Period size: 31 Copynumber: 3.3 Consensus size: 30
69454008 GAGCCTTTCA
69454018 AAAATTTTAATTAGACCTTCCAAAATTTTTG
1 AAAATTTTAATTA-ACCTTCCAAAATTTTTG
* *
69454049 AAAATTCTT-ATTAATCTTCTCGAAATCTTTT-
1 AAAATT-TTAATTAACCTTC-CAAAAT-TTTTG
* *
69454080 AAAATTTTAATTAAACC-CCCTAAAGTTTTTG
1 AAAATTTTAATT-AACCTTCC-AAAATTTTTG
*
69454111 AAAATATTAA
1 AAAATTTTAA
69454121 GTAAACCCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
30 12 0.21
31 37 0.64
32 9 0.16
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.42
Consensus pattern (30 bp):
AAAATTTTAATTAACCTTCCAAAATTTTTG
Found at i:69467803 original size:23 final size:23
Alignment explanation
Indices: 69467766--69467816 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
69467756 ATATATAGAT
*
69467766 AAAATAATAATAATTACA-TATA
1 AAAATAAAAATAATTACATTATA
*
69467788 AAAATAAAAAATAATTACATTATC
1 AAAAT-AAAAATAATTACATTATA
69467812 AAAAT
1 AAAAT
69467817 TAACTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.20
23 12 0.48
24 8 0.32
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAATAAAAATAATTACATTATA
Found at i:69471048 original size:18 final size:18
Alignment explanation
Indices: 69471017--69471051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69471007 TCTATTATTA
*
69471017 AGTGGGGAATGTGCAATG
1 AGTGGGGAAGGTGCAATG
*
69471035 AGTGGTGAAGGTGCAAT
1 AGTGGGGAAGGTGCAAT
69471052 AGCTGGGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.43, T:0.23
Consensus pattern (18 bp):
AGTGGGGAAGGTGCAATG
Found at i:69477362 original size:2 final size:2
Alignment explanation
Indices: 69477355--69477380 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69477345 ATGAACTGAA
69477355 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69477381 GGGCTACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69482181 original size:29 final size:30
Alignment explanation
Indices: 69482128--69482187 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
69482118 TCCGAGCATT
*
69482128 GGGGCAAAAATGTAATTATGTAAAAATTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
*
69482158 GGGGC-AAAATCGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAAT-GTAATTATGTAAAAAGTTA
69482187 G
1 G
69482188 AGTCGAGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAAGTTA
Found at i:69482600 original size:50 final size:50
Alignment explanation
Indices: 69482525--69482708 Score: 264
Period size: 50 Copynumber: 3.7 Consensus size: 50
69482515 TTGGGTAAAC
*
69482525 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAT
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
*
69482575 AGGTCGCC-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAG
1 AGGTC-CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
* *
69482625 AGGTTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGT
1 AGG-TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGA-T
** *
69482676 ACATCCCATGTAAGACCATGTCTAGGACATGGC
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGC
69482709 TTTGGCATGT
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
50 93 0.77
51 28 0.23
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
Found at i:69484603 original size:185 final size:186
Alignment explanation
Indices: 69484290--69484625 Score: 602
Period size: 185 Copynumber: 1.8 Consensus size: 186
69484280 TAGCATACTG
*
69484290 GTGGTATTTGATGAGATGTCAATGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
1 GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
*
69484355 CCTTGTAGCAGATCAGACTGAATCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
66 CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
69484420 TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
131 TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
** * *
69484476 GTGGTATTTGATGAGATGTCAAGGTGGAACTGGGAGAAGAAAGAACCATA-TTAGTTTCTGAAGA
1 GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
*
69484540 CCTTGTAGCAGATCAGATTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
66 CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
69484605 TCAGGGGCACTAGACCCTTGG
131 TCAGGGGCACTAGACCCTTGG
69484626 CTGAGATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
185 97 0.68
186 46 0.32
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (186 bp):
GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
Found at i:69509169 original size:73 final size:73
Alignment explanation
Indices: 69509050--69509235 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
69509040 ACAACTTGAC
69509050 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
69509115 CACTAACA
66 CACTAACA
69509123 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
69509188 CACTAACA
66 CACTAACA
*
69509196 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
69509236 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:69509244 original size:3 final size:3
Alignment explanation
Indices: 69509236--69509264 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
69509226 ATTACATCCA
69509236 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
69509265 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:69517342 original size:42 final size:42
Alignment explanation
Indices: 69517294--69517391 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
69517284 TCTTGGTATT
* * **
69517294 GCACACTTAGTGCCTGTTAGTCGACATCGTCATTTTTTTTTC
1 GCACACTTAGTGCCCGTTAGTCAACATCGTCATTTTAATTTC
*
69517336 GCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATTTC
1 GCACACTTAGTGCCCGTTAGTCAACATCGTCATTTTAATTTC
*
69517378 GTACACTTAGTGCC
1 GCACACTTAGTGCC
69517392 ATTCGTATAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (42 bp):
GCACACTTAGTGCCCGTTAGTCAACATCGTCATTTTAATTTC
Found at i:69530991 original size:4 final size:4
Alignment explanation
Indices: 69530982--69531012 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
69530972 AAACTAAGTA
69530982 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
69531013 AATAAAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:69532418 original size:23 final size:22
Alignment explanation
Indices: 69532367--69532418 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
69532357 CCTCGTCTTT
*
69532367 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
69532389 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
69532412 TTCTTTT
1 TTCTTTT
69532419 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:69537313 original size:7 final size:7
Alignment explanation
Indices: 69537298--69537329 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
69537288 TCTGATACAT
*
69537298 GAACGAA
1 GAACCAA
69537305 GAACCAA
1 GAACCAA
69537312 GAACCAA
1 GAACCAA
69537319 GAACCAA
1 GAACCAA
69537326 GAAC
1 GAAC
69537330 AATATACCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.56, C:0.25, G:0.19, T:0.00
Consensus pattern (7 bp):
GAACCAA
Found at i:69539161 original size:83 final size:83
Alignment explanation
Indices: 69539059--69539221 Score: 299
Period size: 83 Copynumber: 2.0 Consensus size: 83
69539049 ACATTAGAAT
69539059 CTAAATTTTAGAGTTTTCAATGAAATATAATGTACTAACTTAAACAAAAAGAAAGTTCAAACTCT
1 CTAAATTTTAGAGTTTTCAATGAAATATAATGTACTAACTTAAACAAAAAGAAAGTTCAAACTCT
*
69539124 AATGTGAGAACAATTGTC
66 AATGTAAGAACAATTGTC
* *
69539142 CTAAATTTTAGAGTTTTCAATGAAATATCATGTACTAACTTAAACAAAAAGAAAGTTCAAGCTCT
1 CTAAATTTTAGAGTTTTCAATGAAATATAATGTACTAACTTAAACAAAAAGAAAGTTCAAACTCT
69539207 AATGTAAGAACAATT
66 AATGTAAGAACAATT
69539222 ATCAAGTTCA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (83 bp):
CTAAATTTTAGAGTTTTCAATGAAATATAATGTACTAACTTAAACAAAAAGAAAGTTCAAACTCT
AATGTAAGAACAATTGTC
Found at i:69550356 original size:17 final size:17
Alignment explanation
Indices: 69550298--69550357 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
69550288 TTATATCTAC
69550298 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
* *
69550315 TAAATTTCACATT-TTATAT
1 T--ATTT-ATATTATTAAAT
69550334 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
*
69550351 TGTTTAT
1 TATTTAT
69550358 TGAATATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 16 0.47
19 10 0.29
20 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:69552450 original size:8 final size:9
Alignment explanation
Indices: 69552412--69552447 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
69552402 ATCCAAAAAG
69552412 TTAATAAA-
1 TTAATAAAT
69552420 TTAATAAAT
1 TTAATAAAT
*
69552429 TTTATAAAT
1 TTAATAAAT
69552438 TTAATAAAT
1 TTAATAAAT
69552447 T
1 T
69552448 AATTTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TTAATAAAT
Found at i:69552463 original size:26 final size:25
Alignment explanation
Indices: 69552407--69552463 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
69552397 CCCTAATCCA
* **
69552407 AAAAGTTAATAAATTAATAAATTTT
1 AAAATTTAATAAATTAATAAATTAC
*
69552432 ATAAATTTAATAAATTAATTTAATTAC
1 A-AAATTTAATAAATTAA-TAAATTAC
69552459 AAAAT
1 AAAAT
69552464 CCTAAACCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 19 0.73
27 6 0.23
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (25 bp):
AAAATTTAATAAATTAATAAATTAC
Found at i:69552567 original size:9 final size:9
Alignment explanation
Indices: 69552538--69552573 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
69552528 ATTTCTCTCC
69552538 AAAACCCTA
1 AAAACCCTA
* *
69552547 AAAATCCGA
1 AAAACCCTA
69552556 AAAACCCTA
1 AAAACCCTA
69552565 AAAACCCTA
1 AAAACCCTA
69552574 CCGCGAAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.56, C:0.31, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAACCCTA
Found at i:69552877 original size:3 final size:3
Alignment explanation
Indices: 69552869--69552898 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
69552859 ACAATTATTT
*
69552869 TTC TTC TTC TTC TTA TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
69552899 CTTTGCTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:69555965 original size:19 final size:19
Alignment explanation
Indices: 69555922--69555975 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
69555912 AAAAATATAA
* *
69555922 ATTTTGGAACTTTTATAAAT
1 ATTTT-GAAATTTTAAAAAT
69555942 ATTTT-AAATTTTAAAAATT
1 ATTTTGAAATTTTAAAAA-T
*
69555961 ATTTTGTAATTTTAA
1 ATTTTGAAATTTTAA
69555976 TTGAGAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 10 0.34
19 6 0.21
20 13 0.45
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.54
Consensus pattern (19 bp):
ATTTTGAAATTTTAAAAAT
Found at i:69563132 original size:25 final size:25
Alignment explanation
Indices: 69563098--69563147 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
69563088 TGGCTGGTGG
*
69563098 TGCAGCATGCTGGCTC-ACTTCATCA
1 TGCAGCATGCTAGC-CAACTTCATCA
69563123 TGCAGCATGCTAGCCAACTTCATCA
1 TGCAGCATGCTAGCCAACTTCATCA
69563148 GCTTTGCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (25 bp):
TGCAGCATGCTAGCCAACTTCATCA
Found at i:69574155 original size:13 final size:13
Alignment explanation
Indices: 69574137--69574161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69574127 CCTCATTGGG
69574137 TTTTTCTTTCTTT
1 TTTTTCTTTCTTT
69574150 TTTTTCTTTCTT
1 TTTTTCTTTCTT
69574162 ATAATGATCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTCTTTCTTT
Found at i:69582919 original size:104 final size:105
Alignment explanation
Indices: 69582675--69582940 Score: 446
Period size: 104 Copynumber: 2.5 Consensus size: 105
69582665 GTATATAAAA
** *
69582675 GGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCTTT
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTT
69582739 GAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
65 GAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
*
69582780 GGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
69582845 AAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
66 AAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
** *
69582884 GGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
69582941 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 85 0.56
105 66 0.43
106 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.30
Consensus pattern (105 bp):
GGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTG
AAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGAG
Found at i:69590900 original size:11 final size:11
Alignment explanation
Indices: 69590886--69590933 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
69590876 ATTGATTTTT
69590886 AAAAATTATAAA
1 AAAAATTAT-AA
69590898 AAAAATTATTTAA
1 AAAAATTA--TAA
*
69590911 AAAAACTATAA
1 AAAAATTATAA
*
69590922 AAAAGTTATAA
1 AAAAATTATAA
69590933 A
1 A
69590934 TATATATAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 13 0.42
12 8 0.26
13 9 0.29
14 1 0.03
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:69590911 original size:14 final size:12
Alignment explanation
Indices: 69590886--69590925 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
69590876 ATTGATTTTT
69590886 AAAAATTATAAA
1 AAAAATTATAAA
*
69590898 AAAAATTATTTAA
1 AAAAATTA-TAAA
*
69590911 AAAAACTATAAA
1 AAAAATTATAAA
69590923 AAA
1 AAA
69590926 GTTATAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:69591084 original size:30 final size:29
Alignment explanation
Indices: 69591017--69591103 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
69591007 ACTAATAATT
69591017 TTTAAATTTTTATAATATTTATTAATTTA
1 TTTAAATTTTTATAATATTTATTAATTTA
* *
69591046 TATAAATTTTCCTATAAT-TTT-TTTATTTCA
1 TTTAAATTTT--TATAATATTTATTAATTT-A
*
69591076 TTTAAA-TTTTATAATATTTTAATAATTT
1 TTTAAATTTTTATAATA-TTTATTAATTT
69591104 CTAATAATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
27 6 0.13
29 21 0.45
30 14 0.30
31 6 0.13
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTAAATTTTTATAATATTTATTAATTTA
Found at i:69592446 original size:16 final size:16
Alignment explanation
Indices: 69592427--69592470 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
69592417 CTCAATTTTG
*
69592427 AATAATCCAAATCCAA
1 AATAATCCAAACCCAA
69592443 AATAA-CTCAAACCCAA
1 AATAATC-CAAACCCAA
69592459 AATAATCCAAAC
1 AATAATCCAAAC
69592471 TTAAAACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.57, C:0.27, G:0.00, T:0.16
Consensus pattern (16 bp):
AATAATCCAAACCCAA
Found at i:69592476 original size:16 final size:16
Alignment explanation
Indices: 69592427--69592476 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
69592417 CTCAATTTTG
69592427 AATAATCCAAA-TCCAA
1 AATAATCCAAACT-CAA
*
69592443 AATAA-CTCAAACCCAA
1 AATAATC-CAAACTCAA
*
69592459 AATAATCCAAACTTAA
1 AATAATCCAAACTCAA
69592475 AA
1 AA
69592477 CATTCAAACG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (16 bp):
AATAATCCAAACTCAA
Found at i:69600105 original size:44 final size:44
Alignment explanation
Indices: 69600027--69600128 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 44
69600017 TATTACTTAT
* *
69600027 TTAATTTCACTTGAATCCACCATTTATACAAATTTATGATAATA
1 TTAATGTCAATTGAATCCACCATTTATACAAATTTATGATAATA
* * * * *
69600071 TTAATGTCAATTGAATCTACTATTTCTACGAATTTATGATGATA
1 TTAATGTCAATTGAATCCACCATTTATACAAATTTATGATAATA
69600115 TTAATGTCAATTGA
1 TTAATGTCAATTGA
69600129 GTAATTATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (44 bp):
TTAATGTCAATTGAATCCACCATTTATACAAATTTATGATAATA
Found at i:69629621 original size:23 final size:23
Alignment explanation
Indices: 69629595--69629668 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
69629585 AATGTTCACG
*
69629595 AACATGTTCATGAACATTAAACA
1 AACATGTTCACGAACATTAAACA
**
69629618 AACATGTTTGCGAACATTAAACA
1 AACATGTTCACGAACATTAAACA
** * *
69629641 AACACATTCACAAACAGTAAACCA
1 AACATGTTCACGAACATTAAA-CA
69629665 AACA
1 AACA
69629669 AACAAACAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 35 0.85
24 6 0.15
ACGTcount: A:0.50, C:0.22, G:0.08, T:0.20
Consensus pattern (23 bp):
AACATGTTCACGAACATTAAACA
Found at i:69629691 original size:24 final size:23
Alignment explanation
Indices: 69629664--69629711 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
69629654 ACAGTAAACC
69629664 AAACAAACAAACAAAATATTAAAT
1 AAACAAACAAACAAAAT-TTAAAT
*
69629688 AAACAAACCAACAAAATTTAAAT
1 AAACAAACAAACAAAATTTAAAT
69629711 A
1 A
69629712 TAAAAATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.17
Consensus pattern (23 bp):
AAACAAACAAACAAAATTTAAAT
Found at i:69634696 original size:52 final size:52
Alignment explanation
Indices: 69634625--69634972 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
69634615 ATCAAGTGAC
* **
69634625 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
69634677 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
69634729 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
69634775 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
69634827 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
69634873 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
69634925 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
69634973 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:69634747 original size:98 final size:98
Alignment explanation
Indices: 69634677--69634983 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
69634667 TGACAAGTGG
* *
69634677 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
69634742 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
69634775 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
69634840 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
69634873 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
69634938 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
69634971 AAAGTGATAAGTG
1 AAAGTGATAAGTG
69634984 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:69634831 original size:150 final size:144
Alignment explanation
Indices: 69634611--69634972 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
69634601 TTTGAGTACT
69634611 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
69634676 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
69634741 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
69634761 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
69634826 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
69634891 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
69634905 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
69634970 CAA
60 CAA
69634973 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:69634991 original size:37 final size:37
Alignment explanation
Indices: 69634947--69635129 Score: 307
Period size: 37 Copynumber: 5.0 Consensus size: 37
69634937 GATAGCTTTA
*
69634947 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
69634984 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
69635021 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
69635058 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
69635095 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
69635130 ATCATACGTA
Statistics
Matches: 141, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
35 11 0.08
36 4 0.03
37 126 0.89
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:69639475 original size:25 final size:25
Alignment explanation
Indices: 69639446--69639496 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
69639436 ATTTGAATGC
69639446 TTTTATTTTTAATCTACTCTTTCCA
1 TTTTATTTTTAATCTACTCTTTCCA
69639471 TTTTATTTTTAATCTACTCTTTCCA
1 TTTTATTTTTAATCTACTCTTTCCA
69639496 T
1 T
69639497 ATAGCCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTATTTTTAATCTACTCTTTCCA
Found at i:69650185 original size:4 final size:4
Alignment explanation
Indices: 69650176--69650217 Score: 57
Period size: 4 Copynumber: 9.8 Consensus size: 4
69650166 TTTATTCTGT
69650176 TTAG TTAG TTAG TTAG TTAG TTAG TTAG AATTGAG TTAG TTA
1 TTAG TTAG TTAG TTAG TTAG TTAG TTAG --TT-AG TTAG TTA
69650218 TTCAGTTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 29 0.83
5 2 0.06
6 2 0.06
7 2 0.06
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
TTAG
Done.