Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 221 of 222
Found at i:70174699 original size:22 final size:23
Alignment explanation
Indices: 70174650--70174699 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
70174640 AATCATATTG
*
70174650 ATAATAAAAATAAAATTGAATCT
1 ATAATTAAAATAAAATTGAATCT
* *
70174673 A-AATTAAAATAAATTTTAAT-T
1 ATAATTAAAATAAAATTGAATCT
70174694 ATAATT
1 ATAATT
70174700 TACGTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 20 0.87
23 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
ATAATTAAAATAAAATTGAATCT
Found at i:70181889 original size:30 final size:30
Alignment explanation
Indices: 70181834--70181900 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
70181824 AAAAAATTGA
* *
70181834 ATGACTAAAATGAAAAAAATTAATAGTTAG
1 ATGACTAAAATGAAAAAAATGAATAGTCAG
*
70181864 ATGACTAAAAT-AAAACAACTGAATAGTCAG
1 ATGACTAAAATGAAAA-AAATGAATAGTCAG
*
70181894 GTGACTA
1 ATGACTA
70181901 TTCTTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.52, C:0.09, G:0.15, T:0.24
Consensus pattern (30 bp):
ATGACTAAAATGAAAAAAATGAATAGTCAG
Found at i:70182106 original size:23 final size:23
Alignment explanation
Indices: 70182061--70182106 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
70182051 AATTTAATTG
*
70182061 TTAATTCAGTTAATGTTATTTTT
1 TTAATTCAGTTAATGTAATTTTT
* *
70182084 TTAATTC-GTTAGTGTAATATTT
1 TTAATTCAGTTAATGTAATTTTT
70182106 T
1 T
70182107 GAAATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (23 bp):
TTAATTCAGTTAATGTAATTTTT
Found at i:70183591 original size:31 final size:31
Alignment explanation
Indices: 70183556--70183615 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
70183546 GTAACAACCC
*
70183556 AATGACTTAAATAAAAATTTTTGAATAGTCA
1 AATGACTTAAATAAAAATTTTCGAATAGTCA
*
70183587 AATGACTTAAATGAAAATTTTCGAATAGT
1 AATGACTTAAATAAAAATTTTCGAATAGT
70183616 TCAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.35
Consensus pattern (31 bp):
AATGACTTAAATAAAAATTTTCGAATAGTCA
Found at i:70189919 original size:4 final size:4
Alignment explanation
Indices: 70189890--70189983 Score: 125
Period size: 4 Copynumber: 23.5 Consensus size: 4
70189880 AACCTCATCA
* * * *
70189890 GTAT GTAT GCAT GCAT GCAT GCAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
70189938 GTAT GTAT GTAT GTCT GTCT GTCT GTAT GTAT GTAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
70189984 TGCATTACCT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 86 1.00
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.46
Consensus pattern (4 bp):
GTAT
Found at i:70194093 original size:15 final size:15
Alignment explanation
Indices: 70194075--70194118 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
70194065 CATCAAAATA
*
70194075 ATCATCATCATCTCC
1 ATCATCATCACCTCC
70194090 ATCATCATCACCTCC
1 ATCATCATCACCTCC
70194105 ATC-TC--CACCTCC
1 ATCATCATCACCTCC
70194117 AT
1 AT
70194119 GGTTAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 9 0.32
14 2 0.07
15 17 0.61
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (15 bp):
ATCATCATCACCTCC
Found at i:70205829 original size:23 final size:22
Alignment explanation
Indices: 70205803--70205859 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
70205793 AAATTTGAAA
*
70205803 TTTAATTTTTGTACTTTTTATTT
1 TTTAATTTTAGT-CTTTTTATTT
*
70205826 TTTAAAATTTAGTCTTTTTATTT
1 TTT-AATTTTAGTCTTTTTATTT
70205849 TTTATATTTTA
1 TTTA-ATTTTA
70205860 AAATTCAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 1 0.03
23 21 0.72
24 7 0.24
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTAATTTTAGTCTTTTTATTT
Found at i:70205835 original size:30 final size:30
Alignment explanation
Indices: 70205800--70205864 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
70205790 AGTAAATTTG
*
70205800 AAATTTAAT-TTTTGTACTTTTTATTTTTTA
1 AAATTTAATCTTTT-TACTTTTTATATTTTA
* *
70205830 AAATTTAGTCTTTTTATTTTTTATATTTTA
1 AAATTTAATCTTTTTACTTTTTATATTTTA
70205860 AAATT
1 AAATT
70205865 CAGGTTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (30 bp):
AAATTTAATCTTTTTACTTTTTATATTTTA
Found at i:70208087 original size:14 final size:14
Alignment explanation
Indices: 70208068--70208098 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
70208058 TGCTATTATT
70208068 TTACTATTATGTTG
1 TTACTATTATGTTG
*
70208082 TTACTATTTTGTTG
1 TTACTATTATGTTG
70208096 TTA
1 TTA
70208099 TTGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:70208343 original size:12 final size:12
Alignment explanation
Indices: 70208314--70208345 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
70208304 ATATATTTTT
70208314 AAATT-ATATAA
1 AAATTAATATAA
70208325 AAA-TAATATAA
1 AAATTAATATAA
70208336 AAATTAATAT
1 AAATTAATAT
70208346 GAGCTGCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 12 0.63
12 6 0.32
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:70209773 original size:23 final size:22
Alignment explanation
Indices: 70209738--70209782 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
70209728 TTAATTTTGA
70209738 ATATTAAAGTAAAAATTTACAAT
1 ATATTAAAGT-AAAATTTACAAT
** *
70209761 ATATTAACTTAAACTTTACAAT
1 ATATTAAAGTAAAATTTACAAT
70209783 TTTTAAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (22 bp):
ATATTAAAGTAAAATTTACAAT
Found at i:70227871 original size:14 final size:15
Alignment explanation
Indices: 70227843--70227879 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70227833 GTAAAATTTC
*
70227843 AAAGTAATT-TTAAT
1 AAAGTATTTCTTAAT
70227857 AAA-TATTTCTTAAT
1 AAAGTATTTCTTAAT
70227871 AAAGTATTT
1 AAAGTATTT
70227880 TTCATGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 11 0.55
15 5 0.25
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (15 bp):
AAAGTATTTCTTAAT
Found at i:70232428 original size:11 final size:11
Alignment explanation
Indices: 70232414--70232442 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
70232404 ATATATTTTT
70232414 TATATTTAATA
1 TATATTTAATA
70232425 TATATTTAATA
1 TATATTTAATA
70232436 TAT-TTTA
1 TATATTTA
70232443 TACGCTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TATATTTAATA
Found at i:70237041 original size:19 final size:18
Alignment explanation
Indices: 70237009--70237044 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
70236999 AATGGTTAAT
70237009 TAAAAATTTATAAAAATC
1 TAAAAATTTATAAAAATC
*
70237027 TAAAATATTTTTAAAAAT
1 TAAAA-ATTTATAAAAAT
70237045 AAAATCAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAAATTTATAAAAATC
Found at i:70237047 original size:17 final size:18
Alignment explanation
Indices: 70237009--70237049 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
70236999 AATGGTTAAT
70237009 TAAAA-ATTTATAAAAATC
1 TAAAATATTTATAAAAA-C
*
70237027 TAAAATATTTTTAAAAA-
1 TAAAATATTTATAAAAAC
70237044 TAAAAT
1 TAAAAT
70237050 CAGTTCAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 5 0.24
19 10 0.48
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATATTTATAAAAAC
Found at i:70239782 original size:2 final size:2
Alignment explanation
Indices: 70239775--70239804 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
70239765 CAAAGATAAT
70239775 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
70239805 GTAAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:70245092 original size:36 final size:36
Alignment explanation
Indices: 70245028--70245098 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
70245018 CAACAAATAA
* *
70245028 TTAAAAATTATAAAAAAATACATCAAAATT-AAAAT
1 TTAAAAAATATAAAAAAATACATAAAAATTCAAAAT
* *
70245063 TTAAAAAATATAAAAAAGGTTCATAAAAATTCAAAA
1 TTAAAAAATATAAAAAA-ATACATAAAAATTCAAAA
70245099 AAATTTAGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 16 0.53
36 10 0.33
37 4 0.13
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.27
Consensus pattern (36 bp):
TTAAAAAATATAAAAAAATACATAAAAATTCAAAAT
Found at i:70245498 original size:31 final size:31
Alignment explanation
Indices: 70245458--70245527 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
70245448 GAAATTTTAA
* *
70245458 AATTAAAAAAATAAAAATACTAAAATTAATC
1 AATTTAAAAAATAAAAAGACTAAAATTAATC
* * * *
70245489 AATTTAAAAAATTATAAGATTAAAATTTATC
1 AATTTAAAAAATAAAAAGACTAAAATTAATC
*
70245520 AAATTAAA
1 AATTTAAA
70245528 GTATTAAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (31 bp):
AATTTAAAAAATAAAAAGACTAAAATTAATC
Found at i:70245515 original size:23 final size:23
Alignment explanation
Indices: 70245489--70245536 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
70245479 AAAATTAATC
70245489 AATTTAAAAAATTATAAG-ATTAA
1 AATTTAAAAAATTA-AAGTATTAA
**
70245512 AATTTATCAAATTAAAGTATTAA
1 AATTTAAAAAATTAAAGTATTAA
70245535 AA
1 AA
70245537 CTATATCCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTTAAAAAATTAAAGTATTAA
Found at i:70267932 original size:34 final size:34
Alignment explanation
Indices: 70267894--70267958 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
70267884 ATAGCTAATA
70267894 TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
1 TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
70267928 TAAAATTAAAATGTAAATAACTAAAATTAAA
1 TAAAATTAAAATGTAAATAACTAAAATTAAA
70267959 TTGTAATTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (34 bp):
TAAAATTAAAATGTAAATAACTAAAATTAAAGAC
Found at i:70286060 original size:13 final size:13
Alignment explanation
Indices: 70286042--70286066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70286032 CTTCTAACCT
70286042 AAAAAATTAAAAA
1 AAAAAATTAAAAA
70286055 AAAAAATTAAAA
1 AAAAAATTAAAA
70286067 GTTCACAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAATTAAAAA
Found at i:70297782 original size:2 final size:2
Alignment explanation
Indices: 70297775--70297804 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
70297765 CTTTACCTCA
*
70297775 TC TC TC TC TC TC TC TG TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
70297805 ACACACACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
TC
Found at i:70299875 original size:33 final size:32
Alignment explanation
Indices: 70299838--70299957 Score: 123
Period size: 33 Copynumber: 3.7 Consensus size: 32
70299828 TAAGAGGCTA
* * *
70299838 GAAGAAGAGGAGCATGAAGGAGCAATAAAACAC
1 GAAGAAGAGGAGCAGGAAGAAGGAAT-AAACAC
* * * **
70299871 GAAGAAGAGGAACGGGTAGAAGGAATCAAACGT
1 GAAGAAGAGGAGCAGGAAGAAGGAAT-AAACAC
70299904 GAAGAAGAGGAGCAGGAAGAAGGAAGTAAACAC
1 GAAGAAGAGGAGCAGGAAGAAGGAA-TAAACAC
* *
70299937 GAAGAAGAGGAGGAAGAAGAA
1 GAAGAAGAGGAGCAGGAAGAA
70299958 ACAAACAAAC
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
33 69 0.99
34 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.36, T:0.05
Consensus pattern (32 bp):
GAAGAAGAGGAGCAGGAAGAAGGAATAAACAC
Found at i:70299967 original size:66 final size:66
Alignment explanation
Indices: 70299838--70299977 Score: 160
Period size: 66 Copynumber: 2.1 Consensus size: 66
70299828 TAAGAGGCTA
* * * ** * *
70299838 GAAGAAGAGGAGCATGAAGGAGCAATAAAACACGAAGAAGAGGAACGGGTAGAAGGAATCAAACG
1 GAAGAAGAGGAGCAGGAAGAAGCAATAAAACACGAAGAAGAGGAACGGGAAGAAACAAACAAACA
70299903 T
66 T
*
70299904 GAAGAAGAGGAGCAGGAAGAAGGAAGT-AAACACGAAGAAGAGG-A-GGAAGAAGAAACAAACAA
1 GAAGAAGAGGAGCAGGAAGAAGCAA-TAAAACACGAAGAAGAGGAACGG--GAAGAAACAAACAA
70299966 ACAT
63 ACAT
70299970 GAAGAAGA
1 GAAGAAGA
70299978 AGAAGAGGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
64 2 0.03
65 1 0.02
66 59 0.94
67 1 0.02
ACGTcount: A:0.53, C:0.09, G:0.33, T:0.05
Consensus pattern (66 bp):
GAAGAAGAGGAGCAGGAAGAAGCAATAAAACACGAAGAAGAGGAACGGGAAGAAACAAACAAACA
T
Found at i:70299968 original size:33 final size:33
Alignment explanation
Indices: 70299838--70299977 Score: 93
Period size: 33 Copynumber: 4.2 Consensus size: 33
70299828 TAAGAGGCTA
* * *
70299838 GAAGAAGAGGAGCATGAAGGAGCAATA-AAACAC
1 GAAGAAGAGGAGCAAGAAGAAACAA-ACAAACAC
* ** * ** * **
70299871 GAAGAAGAGGAACGGGTAGAAGGAATCAAACGT
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
* ** **
70299904 GAAGAAGAGGAGCAGGAAGAAGGAAGTAAACAC
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
* *
70299937 GAAGAAGAGGAGGAAGAAGAAACAAACAAACAT
1 GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
70299970 GAAGAAGA
1 GAAGAAGA
70299978 AGAAGAGGCT
Statistics
Matches: 83, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.53, C:0.09, G:0.33, T:0.05
Consensus pattern (33 bp):
GAAGAAGAGGAGCAAGAAGAAACAAACAAACAC
Found at i:70313864 original size:21 final size:22
Alignment explanation
Indices: 70313838--70313884 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
70313828 CTCTGCTCAA
*
70313838 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
70313859 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
70313881 ACTC
1 ACTC
70313885 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:70319063 original size:17 final size:18
Alignment explanation
Indices: 70319038--70319074 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
70319028 TCATTTAAAA
70319038 ATTATAAAT-ATATAAATT
1 ATTATAAATAATA-AAATT
70319056 ATTA-AAATAATAAAATT
1 ATTATAAATAATAAAATT
70319073 AT
1 AT
70319075 AATTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTATAAATAATAAAATT
Found at i:70321152 original size:151 final size:147
Alignment explanation
Indices: 70320882--70321179 Score: 560
Period size: 151 Copynumber: 2.0 Consensus size: 147
70320872 AATGGACTAA
70320882 ATTGAAATTCTAGCATTTGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTAT
1 ATTGAAATTCTAGCATTTGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTAT
70320947 AAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCCC
66 AAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCCC
70321012 TTCCCTTCGCCCCCTGC
131 TTCCCTTCGCCCCCTGC
70321029 ATTGAAATTCTAGCATTTGGGGGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATT
1 ATTGAAATTCTAGCATTT----GGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATT
70321094 TTATAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCC
62 TTATAAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCC
70321159 CCCCTTCCCTTCGCCCCCTGC
127 CCCCTTCCCTTCGCCCCCTGC
70321180 TTGTATGTCT
Statistics
Matches: 147, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
147 18 0.12
151 129 0.88
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (147 bp):
ATTGAAATTCTAGCATTTGGGGGGTGCAAACTATAATTTTACCATATATTAACTTGAGATTTTAT
AAATTTTGGGTGACTAAAGTAGCAATTTTCCATTTTGGAGGGGACAAGGGCCTCTGTCTCCCCCC
TTCCCTTCGCCCCCTGC
Found at i:70323194 original size:31 final size:31
Alignment explanation
Indices: 70323159--70323222 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
70323149 TTAACATAAT
*
70323159 ATGCAAATTAATCCTTTTATATTTGATAAAA
1 ATGCAAATCAATCCTTTTATATTTGATAAAA
70323190 ATGCAAATCAATCCTTTTATATTTGATAAAA
1 ATGCAAATCAATCCTTTTATATTTGATAAAA
70323221 AT
1 AT
70323223 TTCATTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (31 bp):
ATGCAAATCAATCCTTTTATATTTGATAAAA
Found at i:70323362 original size:20 final size:19
Alignment explanation
Indices: 70323316--70323354 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
70323306 TTAATCCGAC
70323316 AAACAAAGATTATTTTTTA
1 AAACAAAGATTATTTTTTA
70323335 AAACAAAGATTATTTTTTA
1 AAACAAAGATTATTTTTTA
70323354 A
1 A
70323355 GTAGAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
AAACAAAGATTATTTTTTA
Found at i:70328676 original size:6 final size:6
Alignment explanation
Indices: 70328666--70328696 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
70328656 AGTAAAGCAT
*
70328666 CCAACT CCAACA CCAACA CCAACA CCAACA C
1 CCAACA CCAACA CCAACA CCAACA CCAACA C
70328697 ATTCAACAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.45, C:0.52, G:0.00, T:0.03
Consensus pattern (6 bp):
CCAACA
Found at i:70334187 original size:31 final size:30
Alignment explanation
Indices: 70334152--70334247 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 30
70334142 GTTAATTAAT
*
70334152 ATTTGGTACCTAAATTTGATTTTAATATTCA
1 ATTTGATACCTAAATTTG-TTTTAATATTCA
* * * *
70334183 ATTTGATACTTAAGTTT-TTCTT-TTGTCTCA
1 ATTTGATACCTAAATTTGTT-TTAATAT-TCA
*
70334213 ATTTGATACCTGAATTTGGTTTTAATATTCA
1 ATTTGATACCTAAATTT-GTTTTAATATTCA
70334244 ATTT
1 ATTT
70334248 AACACCTGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
29 4 0.08
30 19 0.38
31 23 0.46
32 4 0.08
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.52
Consensus pattern (30 bp):
ATTTGATACCTAAATTTGTTTTAATATTCA
Found at i:70341321 original size:25 final size:23
Alignment explanation
Indices: 70341297--70341341 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70341287 TTATTATATA
* *
70341297 ATAA-ATATTTTTATATTTTTTT
1 ATAATATATTATTATAATTTTTT
70341319 ATAATATATTATTATAATTTTTT
1 ATAATATATTATTATAATTTTTT
70341342 CAACAAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATAATATATTATTATAATTTTTT
Found at i:70343943 original size:13 final size:13
Alignment explanation
Indices: 70343925--70343949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70343915 TTAATTCATG
70343925 ACTGATTTGATTC
1 ACTGATTTGATTC
70343938 ACTGATTTGATT
1 ACTGATTTGATT
70343950 TCTATATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
ACTGATTTGATTC
Found at i:70356205 original size:20 final size:21
Alignment explanation
Indices: 70356167--70356207 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
70356157 ATTTATGAAC
70356167 AGAAATGAAAGAGATGAGAAG
1 AGAAATGAAAGAGATGAGAAG
70356188 AGAAATGGAAA-A-ATGAGAAG
1 AGAAAT-GAAAGAGATGAGAAG
70356208 GTCTAGAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.10
Consensus pattern (21 bp):
AGAAATGAAAGAGATGAGAAG
Found at i:70362732 original size:42 final size:42
Alignment explanation
Indices: 70362570--70362741 Score: 165
Period size: 42 Copynumber: 4.1 Consensus size: 42
70362560 TCGTGTTTAC
* *
70362570 TTTCTGTTTAGCTCTCACGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCCTTATGGG
* *
70362612 TTT-TCGTTCAGCT-TTATAGAGCTTCTG-TCTAACCCTTATGGG
1 TTTCT-GTTCAGCTCTCA-CGAGCTTCTGTTC-AACCCTTATGGG
* * * * *
70362654 TTTCTGTTCAGCTCTCACGAGTTTCTATTCCACCTTTATAGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCCTTATGGG
** * *
70362696 TTTCTGTTTTGCTCTCATGAGCTTCTGTTC-ATCCTT-TGGG
1 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCCTTATGGG
70362736 TTTCTG
1 TTTCTG
70362742 ATAACAATGT
Statistics
Matches: 105, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
40 9 0.09
41 8 0.08
42 83 0.79
43 5 0.05
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.45
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAACCCTTATGGG
Found at i:70363419 original size:40 final size:40
Alignment explanation
Indices: 70363335--70363425 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 40
70363325 AAAAACTCCG
* * *
70363335 CTATAGATCGAGCATTAGTGGTGCTTCTTGACAAACGCCG
1 CTATAGATCGAGCATTAGCGGTGCTTCTTCACAAACGCCA
* *
70363375 CTATAGATCGATCATTAGCGGTG-TTTTTCA-AGAAGCGCCA
1 CTATAGATCGAGCATTAGCGGTGCTTCTTCACA-AA-CGCCA
*
70363415 CTATAGGTCGA
1 CTATAGATCGA
70363426 CTTTCAGCGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.02
39 7 0.16
40 35 0.81
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (40 bp):
CTATAGATCGAGCATTAGCGGTGCTTCTTCACAAACGCCA
Found at i:70363558 original size:40 final size:39
Alignment explanation
Indices: 70363501--70363607 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 39
70363491 AGCTTTAGTG
70363501 GCATTAGCGGCGTTTTTTTAAAAACGCCGCTATAGGTCGA
1 GCATTAGCGGCG-TTTTTTAAAAACGCCGCTATAGGTCGA
*
70363541 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGGTCGA
1 GCATTAGCGGCG-TTTTTTAAAAACGCCGCTATAGGTCGA
* * *
70363581 CCTTTAGCGGTGTTTTTTGAAAAACGC
1 GCATTAGCGGCGTTTTTT-AAAAACGC
70363608 TGCAAAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 5 0.08
40 55 0.92
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (39 bp):
GCATTAGCGGCGTTTTTTAAAAACGCCGCTATAGGTCGA
Found at i:70363872 original size:15 final size:15
Alignment explanation
Indices: 70363854--70363893 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
70363844 AGTTTATGGA
70363854 TTATGGGTTTAGGGG
1 TTATGGGTTTAGGGG
70363869 TTATGGG-TTAGGGG
1 TTATGGGTTTAGGGG
*
70363883 TTAGGGGTTTA
1 TTATGGGTTTA
70363894 CGATTTATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (15 bp):
TTATGGGTTTAGGGG
Found at i:70363872 original size:22 final size:21
Alignment explanation
Indices: 70363847--70363891 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
70363837 ATTTTAAAGT
*
70363847 TTATGGATTATGGGTTTAGGGG
1 TTATGGATTA-GGGGTTAGGGG
*
70363869 TTATGGGTTAGGGGTTAGGGG
1 TTATGGATTAGGGGTTAGGGG
70363890 TT
1 TT
70363892 TACGATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (21 bp):
TTATGGATTAGGGGTTAGGGG
Found at i:70363876 original size:7 final size:7
Alignment explanation
Indices: 70363862--70363891 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
70363852 GATTATGGGT
70363862 TTAGGGG
1 TTAGGGG
*
70363869 TTATGGG
1 TTAGGGG
70363876 TTAGGGG
1 TTAGGGG
70363883 TTAGGGG
1 TTAGGGG
70363890 TT
1 TT
70363892 TACGATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.50, T:0.37
Consensus pattern (7 bp):
TTAGGGG
Found at i:70364679 original size:22 final size:24
Alignment explanation
Indices: 70364648--70364691 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
70364638 TCAGTTAACT
*
70364648 AAAAATTTTTAGC-GA-CAAAATA
1 AAAAAATTTTAGCAGAGCAAAATA
70364670 AAAAAATTTTAGCAGAGCAAAA
1 AAAAAATTTTAGCAGAGCAAAA
70364692 CGACGTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23
Consensus pattern (24 bp):
AAAAAATTTTAGCAGAGCAAAATA
Found at i:70370225 original size:33 final size:33
Alignment explanation
Indices: 70370188--70370251 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
70370178 AACCCCAAGG
70370188 AGAAAAGAGATTGATAATCGCATATCATATTGC
1 AGAAAAGAGATTGATAATCGCATATCATATTGC
70370221 AGAAAAGAGATTGATAATCGCATATCATATT
1 AGAAAAGAGATTGATAATCGCATATCATATT
70370252 TCAATGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (33 bp):
AGAAAAGAGATTGATAATCGCATATCATATTGC
Found at i:70373141 original size:5 final size:5
Alignment explanation
Indices: 70373131--70373160 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
70373121 CTCGCTATTC
70373131 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
70373161 TAAGTTGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:70380328 original size:42 final size:42
Alignment explanation
Indices: 70380231--70380331 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
70380221 TCGTCTTTAC
* * * * * *
70380231 TTTCTGTTTCGCTCTCACGAGCTTCTGTTTAACCTTTATGGG
1 TTTCTGCTTAGCTCTCACGAGCTTCCGTTCAACCCTTATAGG
70380273 TTTC--CATTCAGCTCTCACGAGCTTCCGTTCAACCCTTATAGG
1 TTTCTGC-TT-AGCTCTCACGAGCTTCCGTTCAACCCTTATAGG
70380315 TTTCTGCTTAGCTCTCA
1 TTTCTGCTTAGCTCTCA
70380332 TTTGGGTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
41 2 0.04
42 44 0.90
43 2 0.04
44 1 0.02
ACGTcount: A:0.15, C:0.29, G:0.16, T:0.41
Consensus pattern (42 bp):
TTTCTGCTTAGCTCTCACGAGCTTCCGTTCAACCCTTATAGG
Found at i:70384206 original size:7 final size:7
Alignment explanation
Indices: 70384194--70384222 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
70384184 AATTTTGTAT
70384194 ATTTTCA
1 ATTTTCA
70384201 ATTTTCA
1 ATTTTCA
70384208 ATTTTCA
1 ATTTTCA
70384215 ATTTTCA
1 ATTTTCA
70384222 A
1 A
70384223 CACATACTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTTCA
Found at i:70392565 original size:18 final size:18
Alignment explanation
Indices: 70392542--70392634 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
70392532 CCTAACTACT
*
70392542 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
70392560 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
70392578 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
70392596 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
*
70392614 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
70392632 GTA
1 GTA
70392635 AACGGTCGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:70392594 original size:36 final size:36
Alignment explanation
Indices: 70392540--70392634 Score: 156
Period size: 36 Copynumber: 2.6 Consensus size: 36
70392530 ATCCTAACTA
*
70392540 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
1 CTGTATACGTGAATAGTACCGTATACGTGAATAGTG
70392576 -TCGTATACGTGAATAGTACCGTATACGTGAATAGTG
1 CT-GTATACGTGAATAGTACCGTATACGTGAATAGTG
*
70392612 CTGTATACGTGAATAGTATCGTA
1 CTGTATACGTGAATAGTACCGTA
70392635 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
35 1 0.02
36 53 0.96
37 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (36 bp):
CTGTATACGTGAATAGTACCGTATACGTGAATAGTG
Found at i:70397457 original size:19 final size:19
Alignment explanation
Indices: 70397416--70397457 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
70397406 TATAAACCGA
* *
70397416 AAATAATATATATATTGTT
1 AAATAATATATATATGGTC
70397435 AAATAATATATA-AGTGGTC
1 AAATAATATATATA-TGGTC
70397454 AAAT
1 AAAT
70397458 TAAATTTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (19 bp):
AAATAATATATATATGGTC
Found at i:70397979 original size:33 final size:33
Alignment explanation
Indices: 70397942--70398005 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
70397932 AACCCCAAGG
70397942 AGAAAAGAGATTGATAATCGCATATCATATTGC
1 AGAAAAGAGATTGATAATCGCATATCATATTGC
70397975 AGAAAAGAGATTGATAATCGCATATCATATT
1 AGAAAAGAGATTGATAATCGCATATCATATT
70398006 TCAATGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (33 bp):
AGAAAAGAGATTGATAATCGCATATCATATTGC
Found at i:70402585 original size:15 final size:15
Alignment explanation
Indices: 70402565--70402672 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
70402555 TTTATGGAAA
70402565 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
70402580 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
70402594 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
70402610 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
70402624 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
70402640 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
70402654 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
70402670 ATC
1 ATC
70402673 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:70402602 original size:30 final size:30
Alignment explanation
Indices: 70402559--70402682 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
70402549 TCCATATTTA
* *
70402559 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
70402589 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
70402619 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
70402649 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
70402680 TGG
1 TGG
70402683 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:70405208 original size:19 final size:19
Alignment explanation
Indices: 70405167--70405208 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
70405157 TATAAACCGA
* *
70405167 AAATAATATATATATTGTT
1 AAATAATATATATATGGTC
70405186 AAATAATATATA-AGTGGTC
1 AAATAATATATATA-TGGTC
70405205 AAAT
1 AAAT
70405209 TAAATTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.50, C:0.02, G:0.10, T:0.38
Consensus pattern (19 bp):
AAATAATATATATATGGTC
Found at i:70407840 original size:2 final size:2
Alignment explanation
Indices: 70407828--70407857 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
70407818 AATAGATCCT
*
70407828 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70407858 AAGTTATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:70413895 original size:13 final size:13
Alignment explanation
Indices: 70413877--70413902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70413867 TTTATCAATT
70413877 AATATTTTTCTAA
1 AATATTTTTCTAA
70413890 AATATTTTTCTAA
1 AATATTTTTCTAA
70413903 GCTAAAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
AATATTTTTCTAA
Found at i:70414347 original size:32 final size:32
Alignment explanation
Indices: 70414306--70414371 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
70414296 GATGAATCAC
*
70414306 TCTCTCCCATTGCATCACATCAAAATTCAAAA
1 TCTCTCCCATTGCAGCACATCAAAATTCAAAA
*
70414338 TCTCTCCCATTGCAGCACATCAAGATTCAAAA
1 TCTCTCCCATTGCAGCACATCAAAATTCAAAA
70414370 TC
1 TC
70414372 GAAATGATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.32, G:0.06, T:0.27
Consensus pattern (32 bp):
TCTCTCCCATTGCAGCACATCAAAATTCAAAA
Found at i:70414595 original size:13 final size:15
Alignment explanation
Indices: 70414576--70414612 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
70414566 TTAATCTTTA
70414576 AAATTATAAAAT-AT
1 AAATTATAAAATAAT
70414590 -AATTATTAAAATAAT
1 AAATTA-TAAAATAAT
70414605 AAATTATA
1 AAATTATA
70414613 TTTTTACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.25
14 6 0.30
15 4 0.20
16 5 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATTATAAAATAAT
Found at i:70414598 original size:22 final size:22
Alignment explanation
Indices: 70414573--70414637 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
70414563 AATTTAATCT
70414573 TTAAAATTATAAAATATAATTA
1 TTAAAATTATAAAATATAATTA
* * *
70414595 TTAAAATAATAAATTAT-ATTT
1 TTAAAATTATAAAATATAATTA
*
70414616 TTACAATTATAAAATTATAATT
1 TTAAAATTATAAAA-TATAATT
70414638 TAATTTCTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 14 0.40
22 18 0.51
23 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAAATTATAAAATATAATTA
Found at i:70418308 original size:20 final size:20
Alignment explanation
Indices: 70418283--70418332 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
70418273 TGGCTTAAAA
70418283 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
70418303 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
70418320 GTGGTAGTGGATT
1 TTGGTAGTGGATT
70418333 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:70422944 original size:20 final size:20
Alignment explanation
Indices: 70422919--70422968 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
70422909 TGGCTTAAAA
70422919 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
70422939 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
70422956 GTGGTAGTGGATT
1 TTGGTAGTGGATT
70422969 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:70424825 original size:14 final size:14
Alignment explanation
Indices: 70424806--70424832 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70424796 TCAAACAAAG
70424806 TTGCAAAACTGAAT
1 TTGCAAAACTGAAT
70424820 TTGCAAAACTGAA
1 TTGCAAAACTGAA
70424833 GCAAGAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (14 bp):
TTGCAAAACTGAAT
Found at i:70431770 original size:3 final size:3
Alignment explanation
Indices: 70431762--70431800 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
70431752 CATACACTAT
70431762 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70431801 CTTTCTAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70444880 original size:12 final size:12
Alignment explanation
Indices: 70444863--70444887 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70444853 AAAATGCAAG
70444863 TGTATATATATA
1 TGTATATATATA
70444875 TGTATATATATA
1 TGTATATATATA
70444887 T
1 T
70444888 AGATGGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTATATATATA
Found at i:70446969 original size:44 final size:43
Alignment explanation
Indices: 70446920--70447004 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
70446910 ATATCCTCCC
70446920 ATATCTGAAAATAGA-AAAATAAAAATCAAACTAAAGGGAAAAGA
1 ATATCTGAAAATAGATAAAA-AAAAA-CAAACTAAAGGGAAAAGA
** * *
70446964 ATATCTTCAATTTGATAAAAAAAAACAAACTAAAGGGAAAA
1 ATATCTGAAAATAGATAAAAAAAAACAAACTAAAGGGAAAA
70447005 AATGAGGAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 16 0.44
44 16 0.44
45 4 0.11
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.19
Consensus pattern (43 bp):
ATATCTGAAAATAGATAAAAAAAAACAAACTAAAGGGAAAAGA
Found at i:70459810 original size:39 final size:39
Alignment explanation
Indices: 70459751--70459871 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
70459741 TCATCAGAGA
*
70459751 AACACAACATTCAGAAAAACAGATTACACAACTACAATC
1 AACATAACATTCAGAAAAACAGATTACACAACTACAATC
70459790 AACATAACATTCAGAAAAACAGATTACACAACTACAATC
1 AACATAACATTCAGAAAAACAGATTACACAACTACAATC
*
70459829 AACATAACATTCAGAAAAACACAGATTATACAA-TCACAATC
1 AACATAACATTCAG-AAAA-ACAGATTACACAACT-ACAATC
70459870 AA
1 AA
70459872 TCCAGGTCAA
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
39 52 0.68
40 5 0.06
41 20 0.26
ACGTcount: A:0.55, C:0.23, G:0.05, T:0.17
Consensus pattern (39 bp):
AACATAACATTCAGAAAAACAGATTACACAACTACAATC
Found at i:70460695 original size:20 final size:21
Alignment explanation
Indices: 70460667--70460705 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70460657 TCATGAATAA
70460667 AAAGCAAAAGAT-TCTTTTCT
1 AAAGCAAAAGATATCTTTTCT
*
70460687 AAAGTAAAAGATATCTTTT
1 AAAGCAAAAGATATCTTTT
70460706 TTTTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAAGCAAAAGATATCTTTTCT
Found at i:70469290 original size:12 final size:12
Alignment explanation
Indices: 70469273--70469297 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70469263 CCTCTCCCTC
70469273 TTTTTTTCTTTT
1 TTTTTTTCTTTT
70469285 TTTTTTTCTTTT
1 TTTTTTTCTTTT
70469297 T
1 T
70469298 AAGTTTATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:70474210 original size:61 final size:62
Alignment explanation
Indices: 70474123--70474242 Score: 170
Period size: 61 Copynumber: 2.0 Consensus size: 62
70474113 CAAAAATCAC
* * * * *
70474123 CACCGCCACCATCGCAAAGCATCAGTTCAAGAGCACAGAAA-CCAGTCCTTTCTAATTAGAT
1 CACCACCACCATCGCAAAGCACCAGTTCAAGAGCACAAAAAGCCAATCATTTCTAATTAGAT
* *
70474184 CACCACCACCATTGCAAAGCACCAGTTCATGAGCACAAAAAGCCAATCATTTCTAATTA
1 CACCACCACCATCGCAAAGCACCAGTTCAAGAGCACAAAAAGCCAATCATTTCTAATTA
70474243 TAATCCGGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
61 36 0.71
62 15 0.29
ACGTcount: A:0.37, C:0.31, G:0.12, T:0.20
Consensus pattern (62 bp):
CACCACCACCATCGCAAAGCACCAGTTCAAGAGCACAAAAAGCCAATCATTTCTAATTAGAT
Found at i:70478636 original size:4 final size:4
Alignment explanation
Indices: 70478627--70478733 Score: 155
Period size: 4 Copynumber: 27.0 Consensus size: 4
70478617 TGCCATCACA
* * *
70478627 ACAT ACAT ACAT -CAA ACAT CACA- ACAT ACAT ACAT ACAT GCAT CCAT
1 ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
70478674 CCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
70478722 ACAT ACAT ACAT
1 ACAT ACAT ACAT
70478734 CAAACACCAG
Statistics
Matches: 95, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
3 5 0.05
4 87 0.92
5 3 0.03
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:70478653 original size:15 final size:16
Alignment explanation
Indices: 70478620--70478739 Score: 112
Period size: 16 Copynumber: 7.6 Consensus size: 16
70478610 TGATACCTGC
70478620 CATCACAACATACATA
1 CATCACAACATACATA
70478636 CATCA-AACATCACA-A
1 CATCACAACAT-ACATA
*
70478651 CAT-ACATACATACATG
1 CATCACA-ACATACATA
*
70478667 CATC-CATCCATACATA
1 CATCACA-ACATACATA
70478683 CAT-ACATACATACATA
1 CATCACA-ACATACATA
70478699 CAT-ACATACATACATA
1 CATCACA-ACATACATA
70478715 CAT-ACATACATACATA
1 CATCACA-ACATACATA
70478731 CATCA-AACA
1 CATCACAACA
70478740 CCAGAAAGTA
Statistics
Matches: 93, Mismatches: 4, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
14 1 0.01
15 16 0.17
16 75 0.81
17 1 0.01
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.22
Consensus pattern (16 bp):
CATCACAACATACATA
Found at i:70480046 original size:3 final size:3
Alignment explanation
Indices: 70480038--70480084 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
70480028 GTTGTTCACT
70480038 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
70480085 GAAATTTACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:70482741 original size:6 final size:6
Alignment explanation
Indices: 70482707--70482740 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
70482697 CAATTATCAA
*
70482707 AATACT AATACT AATACT AATACT AATAAT AATA
1 AATACT AATACT AATACT AATACT AATACT AATA
70482741 AAAGAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (6 bp):
AATACT
Found at i:70490435 original size:14 final size:13
Alignment explanation
Indices: 70490413--70490446 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
70490403 AAAGTATTTT
*
70490413 AAAATTAAAAATTA
1 AAAAATAAAAA-TA
70490427 AAAAATAAAAATA
1 AAAAATAAAAATA
70490440 AAAAATA
1 AAAAATA
70490447 TATATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:70492368 original size:16 final size:15
Alignment explanation
Indices: 70492345--70492402 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
70492335 AAAGAGAATA
70492345 TATTTTCTTTCTTTC
1 TATTTTCTTTCTTTC
* *
70492360 TATTTTTCTAGTCATTC
1 TA-TTTTCT-TTCTTTC
* *
70492377 GATTTTCTATCTTTC
1 TATTTTCTTTCTTTC
70492392 TAATTTTCTTT
1 T-ATTTTCTTT
70492403 AATGTAAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
15 7 0.21
16 20 0.61
17 6 0.18
ACGTcount: A:0.14, C:0.17, G:0.03, T:0.66
Consensus pattern (15 bp):
TATTTTCTTTCTTTC
Found at i:70501648 original size:2 final size:2
Alignment explanation
Indices: 70501641--70501684 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
70501631 TCTTAATTTA
70501641 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
70501683 CT
1 CT
70501685 AGATATATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:70515241 original size:94 final size:96
Alignment explanation
Indices: 70515119--70515312 Score: 268
Period size: 94 Copynumber: 2.0 Consensus size: 96
70515109 TAGAGCATGT
* * * *
70515119 ATTAACTCATATATTTTTCAACCGTTTC-ATTGTAGCTATAATTCATTTTTTAACCTTATTCTTA
1 ATTAACTCATATATTTTTCAACCATTTCAATTGCAACTACAATT-ATTTTTTAACCTTATTCTTA
70515183 TTAGTATATGAAGTTGTAGGACTATATGATTC
65 TTAGTATATGAAGTTGTAGGACTATATGATTC
** * * * *
70515215 ATTAACTCATA-A-TTTTCATTCATTTCAATTGCAATTGCAATTGTTTTTTGACCTTATTCTTAT
1 ATTAACTCATATATTTTTCAACCATTTCAATTGCAACTACAATTATTTTTTAACCTTATTCTTAT
70515278 TAGTATATGAAGTTGTAGGACTATATGATTC
66 TAGTATATGAAGTTGTAGGACTATATGATTC
70515309 ATTA
1 ATTA
70515313 GAGAAGGGAA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 65 0.75
95 11 0.13
96 11 0.13
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (96 bp):
ATTAACTCATATATTTTTCAACCATTTCAATTGCAACTACAATTATTTTTTAACCTTATTCTTAT
TAGTATATGAAGTTGTAGGACTATATGATTC
Found at i:70517142 original size:15 final size:14
Alignment explanation
Indices: 70517119--70517157 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
70517109 GATTTAATCG
70517119 TTATATTTTAATTTAT
1 TTAT-TTTTAATTT-T
70517135 TTATTTTTAATTTT
1 TTATTTTTAATTTT
70517149 TATATTTTT
1 T-TATTTTT
70517158 TTAAATTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.09
15 16 0.73
16 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTTAATTTT
Found at i:70529923 original size:2 final size:2
Alignment explanation
Indices: 70529918--70529944 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70529908 GTGTGTGTGT
70529918 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
70529945 GGCAAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:70538203 original size:13 final size:13
Alignment explanation
Indices: 70538185--70538211 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70538175 ATATATAGAT
70538185 GCACATTTAATTG
1 GCACATTTAATTG
70538198 GCACATTTAATTG
1 GCACATTTAATTG
70538211 G
1 G
70538212 TGAAGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GCACATTTAATTG
Found at i:70550327 original size:143 final size:143
Alignment explanation
Indices: 70550069--70550353 Score: 570
Period size: 143 Copynumber: 2.0 Consensus size: 143
70550059 TGGGTTCGAG
70550069 TAAAATTATCTTATTCAAGATTCAACTCATATAAAAAAAATGAGTTTTAAATTTTACCTAAGTCC
1 TAAAATTATCTTATTCAAGATTCAACTCATATAAAAAAAATGAGTTTTAAATTTTACCTAAGTCC
70550134 AATTTTTGGGTTTCATATTTTGTCTAAACCCTCTTAATTTTAGGGAAATTTAGACGAATAACTCG
66 AATTTTTGGGTTTCATATTTTGTCTAAACCCTCTTAATTTTAGGGAAATTTAGACGAATAACTCG
70550199 ACTCATGAATAAT
131 ACTCATGAATAAT
70550212 TAAAATTATCTTATTCAAGATTCAACTCATATAAAAAAAATGAGTTTTAAATTTTACCTAAGTCC
1 TAAAATTATCTTATTCAAGATTCAACTCATATAAAAAAAATGAGTTTTAAATTTTACCTAAGTCC
70550277 AATTTTTGGGTTTCATATTTTGTCTAAACCCTCTTAATTTTAGGGAAATTTAGACGAATAACTCG
66 AATTTTTGGGTTTCATATTTTGTCTAAACCCTCTTAATTTTAGGGAAATTTAGACGAATAACTCG
70550342 ACTCATGAATAA
131 ACTCATGAATAA
70550354 GTCTAATTTG
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (143 bp):
TAAAATTATCTTATTCAAGATTCAACTCATATAAAAAAAATGAGTTTTAAATTTTACCTAAGTCC
AATTTTTGGGTTTCATATTTTGTCTAAACCCTCTTAATTTTAGGGAAATTTAGACGAATAACTCG
ACTCATGAATAAT
Found at i:70556059 original size:32 final size:32
Alignment explanation
Indices: 70556022--70556113 Score: 148
Period size: 32 Copynumber: 2.9 Consensus size: 32
70556012 AAACGGTTAT
*
70556022 TGAATTATTCAAAAGTTTTTATTCAAGTCAAC
1 TGAATTATTCGAAAGTTTTTATTCAAGTCAAC
* *
70556054 TGAATTATTCGAAAGTTTTTGTTCAAGTCAAT
1 TGAATTATTCGAAAGTTTTTATTCAAGTCAAC
*
70556086 TGAATTATTCGAAAGTTTTTATTTAAGT
1 TGAATTATTCGAAAGTTTTTATTCAAGT
70556114 TTTTTCAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (32 bp):
TGAATTATTCGAAAGTTTTTATTCAAGTCAAC
Found at i:70560257 original size:3 final size:3
Alignment explanation
Indices: 70560249--70560277 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
70560239 AATCATACTT
70560249 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
70560278 TATGCTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:70565564 original size:21 final size:21
Alignment explanation
Indices: 70565538--70565578 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70565528 ATCTGCTCAA
*
70565538 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
70565559 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
70565579 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:70569715 original size:104 final size:104
Alignment explanation
Indices: 70569531--70569736 Score: 306
Period size: 104 Copynumber: 2.0 Consensus size: 104
70569521 ATTTGTAAGA
* * * * *
70569531 AATAGGAGCAAATTCTATTGAAGATACGTTAATTTCATCAAAAAATCATACAATCATTTGATTTA
1 AATAGGAGCAAACTCTATGGAAGATACGTTAATTTCATCAAAAAACCATACAACCATTTGATTCA
*
70569596 ACAATAAATTAATTGCTTGATTTGTAAGAAATATTTAGT
66 ACAATAAATTAATTGCTTGATTAGTAAGAAATATTTAGT
*
70569635 AATAGG-GACAAACTCTATGGAAGATACGTTAATTTCATCAAAAAACCATACGACCATTTGATTC
1 AATAGGAG-CAAACTCTATGGAAGATACGTTAATTTCATCAAAAAACCATACAACCATTTGATTC
* * *
70569699 AATAATAAATTCATTGCTTGATTAGTAAGAAATCTTTA
65 AACAATAAATTAATTGCTTGATTAGTAAGAAATATTTA
70569737 ATCCCTACTA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 1 0.01
104 90 0.99
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (104 bp):
AATAGGAGCAAACTCTATGGAAGATACGTTAATTTCATCAAAAAACCATACAACCATTTGATTCA
ACAATAAATTAATTGCTTGATTAGTAAGAAATATTTAGT
Found at i:70575517 original size:19 final size:21
Alignment explanation
Indices: 70575476--70575517 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 21
70575466 GAGATAGATC
*
70575476 AAATAGAAAAATTAGATATCA
1 AAATAGAAAAATTAGATACCA
*
70575497 AAAT-GAAAAA-TAGTTACCA
1 AAATAGAAAAATTAGATACCA
70575516 AA
1 AA
70575518 TGTTAGTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (21 bp):
AAATAGAAAAATTAGATACCA
Found at i:70586951 original size:6 final size:6
Alignment explanation
Indices: 70586934--70586982 Score: 89
Period size: 6 Copynumber: 8.0 Consensus size: 6
70586924 TTCTTGTTTC
70586934 TGGTGAA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA
1 TGGTG-A TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA
70586983 ATATAAGGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 37 0.88
7 5 0.12
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (6 bp):
TGGTGA
Found at i:70602374 original size:16 final size:18
Alignment explanation
Indices: 70602353--70602390 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
70602343 GTAAGATACA
70602353 ATTTTAT-TATTT-TAAT
1 ATTTTATGTATTTATAAT
70602369 ATTTTATGTATTTATAAT
1 ATTTTATGTATTTATAAT
70602387 ATTT
1 ATTT
70602391 AAATGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTATGTATTTATAAT
Found at i:70606412 original size:16 final size:18
Alignment explanation
Indices: 70606391--70606428 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
70606381 TAAGGATACA
70606391 ATTTTAT-TATTT-TAAT
1 ATTTTATGTATTTATAAT
70606407 ATTTTATGTATTTATAAT
1 ATTTTATGTATTTATAAT
70606425 ATTT
1 ATTT
70606429 AAATGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTATGTATTTATAAT
Found at i:70608516 original size:31 final size:31
Alignment explanation
Indices: 70608458--70608516 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
70608448 TTCTAGTGAG
**
70608458 TTAAATCAAAACTTTCGAATAGTTCAATCAC
1 TTAAATCAAAACTTTCGAATAACTCAATCAC
* * *
70608489 TTAAATGAAAATTTTTGAATAACTCAAT
1 TTAAATCAAAACTTTCGAATAACTCAAT
70608517 GGCCATTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.36
Consensus pattern (31 bp):
TTAAATCAAAACTTTCGAATAACTCAATCAC
Found at i:70610923 original size:48 final size:48
Alignment explanation
Indices: 70610834--70610927 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
70610824 TTTCTTGGCT
* * *
70610834 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
70610882 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
70610928 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.39, C:0.28, G:0.14, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:70612347 original size:37 final size:37
Alignment explanation
Indices: 70612283--70612438 Score: 197
Period size: 37 Copynumber: 4.0 Consensus size: 37
70612273 TACGTATGAT
*
70612283 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
70612319 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
70612356 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
70612399 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
70612439 TGAAGCTATC
Statistics
Matches: 106, Mismatches: 4, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
36 10 0.09
37 53 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:70612409 original size:46 final size:46
Alignment explanation
Indices: 70612356--70612721 Score: 444
Period size: 46 Copynumber: 7.6 Consensus size: 46
70612346 TAAGTGTAGC
* *
70612356 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
70612402 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCTGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
70612448 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
70612500 CACTTATCACTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC-T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
70612551 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * * *
70612597 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
70612643 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
70612695 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
70612722 AGTACTCAAA
Statistics
Matches: 289, Mismatches: 18, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.54
48 1 0.00
49 1 0.00
50 4 0.01
51 47 0.16
52 81 0.28
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:70612663 original size:195 final size:195
Alignment explanation
Indices: 70612356--70612706 Score: 585
Period size: 195 Copynumber: 1.8 Consensus size: 195
70612346 TAAGTGTAGC
* * * * * *
70612356 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
* *
70612421 TGATCAGATAAGTATAGCTGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
70612486 GTAGCCGAAGCTATCACTTATCACTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
131 GTAGCCAAAGCTACCACTTATCACTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
70612551 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
70612616 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
70612681 GTAGCTAAAGCTACCACTTATCACTT
131 GTAGCCAAAGCTACCACTTATCACTT
70612707 TATCACTTGA
Statistics
Matches: 143, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
195 143 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (195 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:70612711 original size:98 final size:97
Alignment explanation
Indices: 70612356--70612721 Score: 490
Period size: 98 Copynumber: 3.7 Consensus size: 97
70612346 TAAGTGTAGC
* * * *
70612356 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
70612421 TGATCAGATAAGTATAGCTGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCTGAAGCTATCACTTAT
* *
70612455 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTCCACTTGT
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCAC-T----TTAT
*
70612520 CACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
60 CACTTGATCAGATAAGTATAGCTGAAGCTATCACTTAT
* * *
70612558 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
* *
70612618 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCTGAAGCTATCACTTAT
* *
70612650 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
70612715 GATCAGA
65 GATCAGA
70612722 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 16, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
92 41 0.17
94 1 0.00
96 1 0.00
97 43 0.18
98 99 0.41
99 8 0.03
100 3 0.01
103 43 0.18
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCTGAAGCTATCACTTAT
Found at i:70616492 original size:48 final size:48
Alignment explanation
Indices: 70616402--70616495 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
70616392 TTTCTTGGCT
* *
70616402 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAATGGATTCAACCG
70616450 TAAAAACGCCTAAGTCAG-CTCAAC-TCACAACAATAAAT-GATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAAT-AATGGATTCAAC
70616496 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
47 4 0.10
48 34 0.83
49 3 0.07
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAATGGATTCAACCG
Found at i:70618597 original size:21 final size:21
Alignment explanation
Indices: 70618571--70618616 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
70618561 TCACAAATTC
* *
70618571 AAATTT-TATTATTATTTTATT
1 AAATTTGTATT-TTAATTTATA
70618592 AAATTTGTATTTTAATTTATA
1 AAATTTGTATTTTAATTTATA
70618613 AAAT
1 AAAT
70618617 GTAAAAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
AAATTTGTATTTTAATTTATA
Found at i:70621236 original size:15 final size:16
Alignment explanation
Indices: 70621216--70621247 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
70621206 GACCAGACCG
70621216 AAATATT-TTAAAAAT
1 AAATATTATTAAAAAT
70621231 AAATATTATTAAAAAT
1 AAATATTATTAAAAAT
70621247 A
1 A
70621248 TTTTAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATTATTAAAAAT
Found at i:70621273 original size:20 final size:20
Alignment explanation
Indices: 70621240--70621297 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
70621230 TAAATATTAT
70621240 TAAAAATATT-TTAAAATTG
1 TAAAAATATTATTAAAATTG
*
70621259 TAAAAAAATTATTAAAA-TG
1 TAAAAATATTATTAAAATTG
70621278 -ATAAAATATTATTTAAAATT
1 TA-AAAATATTA-TTAAAATT
70621298 TTTAAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
20 12 0.36
21 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (20 bp):
TAAAAATATTATTAAAATTG
Found at i:70621644 original size:9 final size:9
Alignment explanation
Indices: 70621594--70621644 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
70621584 TTATTTGTCT
70621594 TTTTTAATAA
1 TTTTT-ATAA
70621604 TTTTT-TCAA
1 TTTTTAT-AA
70621613 -TTTTATAA
1 TTTTTATAA
70621621 TTTTTATAA
1 TTTTTATAA
70621630 CTTTTTTATAA
1 --TTTTTATAA
70621641 TTTT
1 TTTT
70621645 AAAATATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
8 7 0.19
9 15 0.42
10 5 0.14
11 9 0.25
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:70621654 original size:20 final size:20
Alignment explanation
Indices: 70621613--70621655 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
70621603 ATTTTTTCAA
* *
70621613 TTTTATAATTTTTATAACTT
1 TTTTATAATTTTTAAAAATT
70621633 TTTTATAA-TTTTAAAATATT
1 TTTTATAATTTTTAAAA-ATT
70621653 TTT
1 TTT
70621656 AACAACATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTATAATTTTTAAAAATT
Found at i:70621711 original size:28 final size:25
Alignment explanation
Indices: 70621668--70621733 Score: 64
Period size: 28 Copynumber: 2.5 Consensus size: 25
70621658 CAACATTTAA
70621668 TAATAATTTAAAA-TTTAAATATTTT
1 TAATAATTTAAAATTTTAAA-ATTTT
*
70621693 TAATAATTTAAATCTATTTTACAATTTT
1 TAATAATTTAAA---ATTTTAAAATTTT
70621721 T-ATATATTTAAAA
1 TAATA-ATTTAAAA
70621734 ATATTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
25 13 0.37
27 3 0.09
28 14 0.40
29 5 0.14
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (25 bp):
TAATAATTTAAAATTTTAAAATTTT
Found at i:70621718 original size:18 final size:17
Alignment explanation
Indices: 70621674--70621733 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
70621664 TTAATAATAA
70621674 TTTAAAATTTAAATATT
1 TTTAAAATTTAAATATT
*
70621691 TTTAATAATTTAAATCTAT
1 TTTAA-AATTTAAATAT-T
* ** *
70621710 TTTACAATTTTTATATA
1 TTTAAAATTTAAATATT
70621727 TTTAAAA
1 TTTAAAA
70621734 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 11 0.32
18 18 0.53
19 5 0.15
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAAAATTTAAATATT
Found at i:70625912 original size:27 final size:23
Alignment explanation
Indices: 70625861--70625911 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
70625851 TTGATGTGTG
70625861 TAAATTATATTAAAGAGAACAAA
1 TAAATTATATTAAAGAGAACAAA
70625884 TAAATTATATTAAAGAGAACAAA
1 TAAATTATATTAAAGAGAACAAA
*
70625907 CAAAT
1 TAAAT
70625912 ATTAAGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (23 bp):
TAAATTATATTAAAGAGAACAAA
Found at i:70636287 original size:88 final size:87
Alignment explanation
Indices: 70636024--70636646 Score: 699
Period size: 88 Copynumber: 7.2 Consensus size: 87
70636014 CAAGGAGATC
* * * * *
70636024 AGATCTGCAATTCTTCAACCAGCTCCACTACAACCGA-GAGAGGTAAGG-TTTGTCTTCGACCTG
1 AGATCTGCTA-TCTTCAACCAGCTCCACTGCAACCGATG-GAGGCAAGGCTTTGTTTTCGATCTG
* * **
70636087 CTTCACTGTCAACGCAGGAAGATA
64 CTTCGCTGTTAACGCAGGAAGGCA
* * * * * ** *
70636111 AAATCAGTTGTCTTCAACCAACTCTTCTAC-ACTCGA-GAGAGGCAAGGCTTTGTTTTCGATCTG
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAAC-CGATG-GAGGCAAGGCTTTGTTTTCGATCTG
* *
70636174 CTTCGCTGTTAACGTAGGAAAGCA
64 CTTCGCTGTTAACGCAGGAAGGCA
*
70636198 AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTTCGATCTAC
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTG-TTTTCGATCTGC
* * *
70636263 TTCGCTGTCAATGCAGGAATGCA
65 TTCGCTGTTAACGCAGGAAGGCA
* *
70636286 AGATCTGCTATCTTCAACCAGCTCCACTGTAACCGATGGAGGCAAGGCTTTGTTTTTCGATCTAC
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTG-TTTTCGATCTGC
* *
70636351 TTCGCTGTCAATGCAGGAAGGCA
65 TTCGCTGTTAACGCAGGAAGGCA
* * * *
70636374 AGATCTGCTATCTTCAACCAGCTCCACTGTAACCAATGAAGGCAAAGC-TTGTTTTCGATCTGCT
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCT
70636438 TCGCTGTTAACGCAGGAAGGCA
66 TCGCTGTTAACGCAGGAAGGCA
** * * ** * *
70636460 AGATCTTTTGTCTTCAACCAACTCTTCTAC-ACTCGA-GAGAGGCAAGG-TTTGCTTTCGATCTG
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAAC-CGATG-GAGGCAAGGCTTTGTTTTCGATCTG
70636522 CTTCGCTGTTAACGCAGGAAGGCA
64 CTTCGCTGTTAACGCAGGAAGGCA
* * * *
70636546 AGATCTACT-TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGC-TTGTTTTCGATCTGCT
1 AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCT
*
70636609 TCACTGTTAACGCAGGAAGGCA
66 TCGCTGTTAACGCAGGAAGGCA
*
70636631 AGATCTGCTGTCTTCA
1 AGATCTGCTATCTTCA
70636647 CTGATCTGTT
Statistics
Matches: 461, Mismatches: 63, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
85 74 0.16
86 145 0.31
87 78 0.17
88 164 0.36
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (87 bp):
AGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCT
TCGCTGTTAACGCAGGAAGGCA
Found at i:70636415 original size:44 final size:43
Alignment explanation
Indices: 70636195--70636418 Score: 109
Period size: 44 Copynumber: 5.1 Consensus size: 43
70636185 ACGTAGGAAA
* *
70636195 GCAAGATCTGCTATCTTCAACCAGCTCCACTGCAACCGATGGAG
1 GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACC-ATGAAG
* * * * * * * * * *
70636239 GCAAGGCTTTG-T-TTTTCGATCTA-CTTCGCTGTCAATGCAGGAAT
1 GCAA-GATCTGCTATCTTC-AACCAGCTCCACTGT-AA-CCATGAAG
*
70636283 GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACCGATGGAG
1 GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACC-ATGAAG
* * * * * * * * *
70636327 GCAAGGCTTTG-T-TTTTCGATCTA-CTTCGCTGTCAATGCAGGAAG
1 GCAA-GATCTGCTATCTTC-AACCAGCTCCACTGT-AA-CCATGAAG
70636371 GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACCAATGAAG
1 GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACC-ATGAAG
70636415 GCAA
1 GCAA
70636419 AGCTTGTTTT
Statistics
Matches: 122, Mismatches: 42, Indels: 32
0.62 0.21 0.16
Matches are distributed among these distances:
43 31 0.25
44 59 0.48
45 32 0.26
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (43 bp):
GCAAGATCTGCTATCTTCAACCAGCTCCACTGTAACCATGAAG
Found at i:70636547 original size:42 final size:42
Alignment explanation
Indices: 70636499--70636632 Score: 112
Period size: 42 Copynumber: 3.2 Consensus size: 42
70636489 CACTCGAGAG
*
70636499 AGGCAAGGTTTGCTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGA
* * * * * * * *
70636541 AGGCAAGATCTACTTCTTT-AACCAGCTCCACTG-CAAC-CAATGA
1 AGGCAAGGT-T--TGCTTTCGATCTGCTTCACTGTTAACGC-AGGA
* *
70636584 AGGCAAGGCTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
1 AGGCAAGGTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGA
70636626 AGGCAAG
1 AGGCAAG
70636633 ATCTGCTGTC
Statistics
Matches: 66, Mismatches: 19, Indels: 14
0.67 0.19 0.14
Matches are distributed among these distances:
40 4 0.06
41 10 0.15
42 23 0.35
43 15 0.23
44 9 0.14
45 5 0.08
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGA
Found at i:70641371 original size:19 final size:20
Alignment explanation
Indices: 70641342--70641390 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
70641332 CACTTCGTGA
* *
70641342 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
70641361 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
70641381 AAATG-AATGC
1 AAATGTAATGC
70641391 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:70646188 original size:4 final size:4
Alignment explanation
Indices: 70646179--70646208 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
70646169 TTTCAAATGC
70646179 TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TA
70646209 ATAGAAAGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:70659528 original size:14 final size:15
Alignment explanation
Indices: 70659497--70659583 Score: 51
Period size: 14 Copynumber: 6.0 Consensus size: 15
70659487 AAACATAAAA
**
70659497 TAAAAATATAATTGT
1 TAAAAATATAATAAT
70659512 TAAAAA-ATAATAAT
1 TAAAAATATAATAAT
*
70659526 TAAACATA-AATAAATT
1 TAAAAATATAAT-AA-T
* *
70659542 TATTAAGTATAAT--T
1 TA-AAAATATAATAAT
*
70659556 TAATAATA-AATAAT
1 TAAAAATATAATAAT
70659570 T-AAAATATAATAAT
1 TAAAAATATAATAAT
70659584 AGAATTTAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
12 3 0.06
13 8 0.15
14 25 0.46
15 9 0.17
16 3 0.06
17 3 0.06
18 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (15 bp):
TAAAAATATAATAAT
Found at i:70667554 original size:12 final size:14
Alignment explanation
Indices: 70667525--70667556 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
70667515 AACAAACGAA
70667525 AAAAATTAGAATTT
1 AAAAATTAGAATTT
70667539 AAAAATTA-AA-TT
1 AAAAATTAGAATTT
70667551 AAAAAT
1 AAAAAT
70667557 AAAAATATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
AAAAATTAGAATTT
Found at i:70671337 original size:6 final size:6
Alignment explanation
Indices: 70671326--70671359 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
70671316 ATTGAAATGG
70671326 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCA
1 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCA
70671360 TTCGGATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.50, G:0.15, T:0.18
Consensus pattern (6 bp):
CTCAGC
Found at i:70677634 original size:23 final size:23
Alignment explanation
Indices: 70677604--70677649 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
70677594 ATTGAGTAGA
70677604 ATATTCTCTCATGGTATAATTCC
1 ATATTCTCTCATGGTATAATTCC
70677627 ATATTCTCTCATGGTATAATTCC
1 ATATTCTCTCATGGTATAATTCC
70677650 TAAATCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (23 bp):
ATATTCTCTCATGGTATAATTCC
Found at i:70686511 original size:11 final size:11
Alignment explanation
Indices: 70686495--70686530 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
70686485 TTCAATCTTT
70686495 TCATATTTCTC
1 TCATATTTCTC
70686506 TCATATTTCTC
1 TCATATTTCTC
* *
70686517 TCAAATTCCTC
1 TCATATTTCTC
70686528 TCA
1 TCA
70686531 AAGCTCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (11 bp):
TCATATTTCTC
Found at i:70688296 original size:50 final size:50
Alignment explanation
Indices: 70688180--70688373 Score: 273
Period size: 50 Copynumber: 3.9 Consensus size: 50
70688170 TAATAATAAC
* * ** *
70688180 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCG
1 ATGCCAATGCCATGTCCCAGACATGATCTTACATGGGA-CCTCTCATCTCG
* * **
70688231 GTGCCCATGCCATGTCCCAGACATGATCTTACGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCG
70688281 ATGCCAATGCCATGTCCCAGACAT-AGTCTTACATGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGA-TCTTACATGGGACCTCTCATCTCG
*
70688331 ATGCCATTGCCATGTCCCAGACATGATCTTACATGGGACCTCT
1 ATGCCAATGCCATGTCCCAGACATGATCTTACATGGGACCTCT
70688374 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
49 1 0.01
50 93 0.73
51 33 0.26
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCG
Found at i:70689482 original size:13 final size:13
Alignment explanation
Indices: 70689466--70689492 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70689456 CGAACGAAAT
70689466 TTTTATGAAATCA
1 TTTTATGAAATCA
70689479 TTTTATGAAATCA
1 TTTTATGAAATCA
70689492 T
1 T
70689493 AGACCATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTTTATGAAATCA
Found at i:70690976 original size:30 final size:30
Alignment explanation
Indices: 70690942--70691049 Score: 119
Period size: 30 Copynumber: 3.6 Consensus size: 30
70690932 TGACAACGTA
* *
70690942 GGCCCATTAACAGCGCCCACACAATCACTC
1 GGCCCATCAACAGCACCCACACAATCACTC
* *
70690972 GGCCCATCAACAACCCCCACACAATCACTC
1 GGCCCATCAACAGCACCCACACAATCACTC
* * *
70691002 AGCCAATCAACAGCACCCATACAATCAC-C
1 GGCCCATCAACAGCACCCACACAATCACTC
* *
70691031 AGGCCCAACAATAGCACCC
1 -GGCCCATCAACAGCACCC
70691050 TCAACACAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 1 0.02
30 64 0.98
ACGTcount: A:0.35, C:0.44, G:0.10, T:0.10
Consensus pattern (30 bp):
GGCCCATCAACAGCACCCACACAATCACTC
Found at i:70691112 original size:18 final size:18
Alignment explanation
Indices: 70691085--70691124 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
70691075 TAGGTGCGTG
* *
70691085 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
70691103 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
70691121 TCCT
1 TCCT
70691125 TTTTCTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:70691735 original size:116 final size:116
Alignment explanation
Indices: 70691531--70692024 Score: 827
Period size: 116 Copynumber: 4.3 Consensus size: 116
70691521 TTGTATAAAC
*
70691531 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATG-TTGTTTTGAATAAAGTAATTG
1 ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAA-GATTGTTTTGAATAAAGTAATTG
70691595 TAATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
65 TAATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
70691647 ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
1 ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
* *
70691712 AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATCAGGCAAT
66 AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
* * * *
70691763 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATATTTTTTTAAATAAAGTAATTGT
1 ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
*
70691828 AATTTACTTTTATATTTTTAATAAAATA-AATATT-TTTTAAATAAGACTAT
66 AATTTACTTTTATATTTTTAATAAAATAGAA-ATTCTTTTAAATAAGACAAT
70691878 -TTTTG-ATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
1 ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
* * * *
70691941 AATTTAATTTTATATTTTTAATAAAATAGAAATTTTTTTAATTAAGATAAT
66 AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
70691992 ATTTTGAATATTTCTATATTATTTCATGTAATA
1 ATTTTGAATATTTCTATATTATTTCATGTAATA
70692025 GAACCGGTGG
Statistics
Matches: 354, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
113 84 0.24
114 20 0.06
115 21 0.06
116 229 0.65
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (116 bp):
ATTTTGAATATTTCTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGT
AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
Found at i:70691967 original size:229 final size:232
Alignment explanation
Indices: 70691531--70692024 Score: 852
Period size: 229 Copynumber: 2.1 Consensus size: 232
70691521 TTGTATAAAC
* *
70691531 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATGTTGTTTTGAATAAAGTAATTGT
1 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATATTGTTTTAAATAAAGTAATTGT
70691596 AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAATATTTTGAATATTTC
66 AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAATATTTTGAATATTTC
*
70691661 TATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGTAATTTACTTTTATA
131 TATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGTAATTTAATTTTATA
* *
70691726 TTTTTAATAAAATAGAAATTCTTTTAAATCAGGCAAT
196 TTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
*
70691763 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATATTTTTTTAAATAAAGTAATTGT
1 ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATATTGTTTTAAATAAAGTAATTGT
*
70691828 AATTTACTTTTATATTTTTAATAAAATA-AATATT-TTTTAAATAAGACTAT-TTTTG-ATATTT
66 AATTTACTTTTATATTTTTAATAAAATAGAA-ATTCTTTTAAATAAGACAATATTTTGAATATTT
70691889 CTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGTAATTTAATTTTAT
130 CTATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGTAATTTAATTTTAT
* * *
70691954 ATTTTTAATAAAATAGAAATTTTTTTAATTAAGATAAT
195 ATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
*
70691992 ATTTTGAATATTTCTATATTATTTCATGTAATA
1 ATTTTGAATATTTTTATATTATTTCATGTAATA
70692025 GAACCGGTGG
Statistics
Matches: 250, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
229 135 0.54
230 5 0.02
231 17 0.07
232 93 0.37
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (232 bp):
ATTTTGAATATTTTTATATTATTTCATGTAATAAAATAAAATATTGTTTTAAATAAAGTAATTGT
AATTTACTTTTATATTTTTAATAAAATAGAAATTCTTTTAAATAAGACAATATTTTGAATATTTC
TATATTATTTCATGTAATAAAATAAAAGATTGTTTTGAATAAAGTAATTGTAATTTAATTTTATA
TTTTTAATAAAATAGAAATTCTTTTAAATAAGACAAT
Found at i:70694881 original size:31 final size:31
Alignment explanation
Indices: 70694846--70694905 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
70694836 AAAATTAAAT
70694846 TATAATTATAATTGCAATTGTAATTTAAGAC
1 TATAATTATAATTGCAATTGTAATTTAAGAC
70694877 TATAATTATAATTGCAATTGTAATTTAAG
1 TATAATTATAATTGCAATTGTAATTTAAG
70694906 TAATAAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (31 bp):
TATAATTATAATTGCAATTGTAATTTAAGAC
Done.