Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 23 of 222
Found at i:7093498 original size:110 final size:109
Alignment explanation
Indices: 7093111--7093593 Score: 779
Period size: 109 Copynumber: 4.4 Consensus size: 109
7093101 TTTCTAATTG
*
7093111 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* *
7093176 CGTTTAACCAAATGGCTTAATATCCTTTTAAAAAATTTAAAATA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
* *
7093220 AGGCGATGTTTTGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
7093285 CGTTCAACCAAATGGATTAATATCCTTTTAAAAATTTTAAAATA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
* *
7093329 AGGCAATGTTTTGCGTGTGGAAATTCGAGAAAATATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* *
7093394 CGTTCAATCAAATGGCTTAATATCCTTTTAAAATTTTTTAAAATA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAA-ATTTTAAAATA
* * * *
7093439 AGGCAATGTTTTGCATTTGAAAATTAGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
7093504 CGTTCAACCAAATGGCTTAATATCCTTTTAAAATTTTTAAAATA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
* * * *
7093548 AGGCAATATTTTGCGTTTGGAAATTCGAG-GAACGTGTCCTAAGGTG
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTG
7093594 TTGGATTTTG
Statistics
Matches: 346, Mismatches: 27, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
108 14 0.04
109 231 0.67
110 101 0.29
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
Found at i:7093526 original size:219 final size:218
Alignment explanation
Indices: 7093111--7093593 Score: 797
Period size: 219 Copynumber: 2.2 Consensus size: 218
7093101 TTTCTAATTG
*
7093111 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * *
7093176 CGTTTAACCAAATGGCTTAATATCCTTTTAAAAAATTTAAAATAAGGCGATGTTTTGCGTTTGAA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAAAATTTAAAATAAGGCAATGTTTTGCATTTGAA
* *
7093241 AATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGATTAAT
131 AATTAGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCTCGTTCAACCAAATGGATTAAT
7093306 ATCCTTTTAAAAATTTTAAAATA
196 ATCCTTTTAAAAATTTTAAAATA
* *
7093329 AGGCAATGTTTTGCGTGTGGAAATTCGAGAAAATATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* **
7093394 CGTTCAATCAAATGGCTTAATATCCTTTTAAAATTTTTTAAAATAAGGCAATGTTTTGCATTTGA
66 CGTTCAACCAAATGGCTTAATATCCTTTTAAAA-AATTTAAAATAAGGCAATGTTTTGCATTTGA
*
7093459 AAATTAGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCTCGTTCAACCAAATGGCTTAA
130 AAATTAGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCTCGTTCAACCAAATGGATTAA
*
7093524 TATCCTTTTAAAATTTTTAAAATA
195 TATCCTTTTAAAAATTTTAAAATA
* * * *
7093548 AGGCAATATTTTGCGTTTGGAAATTCGAG-GAACGTGTCCTAAGGTG
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTG
7093594 TTGGATTTTG
Statistics
Matches: 245, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
218 106 0.43
219 139 0.57
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (218 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATGGCTTAATATCCTTTTAAAAAATTTAAAATAAGGCAATGTTTTGCATTTGAA
AATTAGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTCTCTCGTTCAACCAAATGGATTAAT
ATCCTTTTAAAAATTTTAAAATA
Found at i:7094137 original size:209 final size:208
Alignment explanation
Indices: 7093778--7094195 Score: 809
Period size: 209 Copynumber: 2.0 Consensus size: 208
7093768 AATCCTTCCT
7093778 CGTGCGTAATTGACTCCCGAACCCATTTTTTGAATTTCGTGGACCAAAATTGTTGTTTTAATAAA
1 CGTGCGTAATTGACTCCCGAACCCATTTTTTGAATTTCGTGGACCAAAATTGTTGTTTTAATAAA
7093843 ATCAAAGCGTTTATTAAAAACAACCACTTTTTGAGGTGATCCGATCACACCTCATCAAAAAGGAT
66 ATCAAAGCGTTTATTAAAAACAACCACTTTTTGAGGTGATCCGATCACACCTCATCAAAAAGGAT
*
7093908 CGGTGGCGACTCCCATTTTCGTTTTCATTTCCAAAACCCAAGTCGACCCCGTTTTTCATCAAAAA
131 CGGTGGCGACTCCCATTTTCGTTTTCATTTCCAAAACCCAAGTCGACCCCATTTTTCATCAAAAA
7093973 AATGGTGTCAACA
196 AATGGTGTCAACA
7093986 CGTGCGTAATTGACTCCCGAACCCATTTTTTTGAATTTCGTGGACCAAAATTGTTGTTTTAATAA
1 CGTGCGTAATTGACTCCCGAACCCA-TTTTTTGAATTTCGTGGACCAAAATTGTTGTTTTAATAA
7094051 AATCAAAGCGTTTATTAAAAACAACCACTTTTTGAGGTGATCCGATCACACCTCATCAAAAAGGA
65 AATCAAAGCGTTTATTAAAAACAACCACTTTTTGAGGTGATCCGATCACACCTCATCAAAAAGGA
7094116 TCGGTGGCGACTCCCATTTTCGTTTTCATTTCCAAAACCCAAGTCGACCCCATTTTTCATCAAAA
130 TCGGTGGCGACTCCCATTTTCGTTTTCATTTCCAAAACCCAAGTCGACCCCATTTTTCATCAAAA
*
7094181 AAATGGTGTCTACA
195 AAATGGTGTCAACA
7094195 C
1 C
7094196 CCCTTTTATA
Statistics
Matches: 207, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
208 25 0.12
209 182 0.88
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (208 bp):
CGTGCGTAATTGACTCCCGAACCCATTTTTTGAATTTCGTGGACCAAAATTGTTGTTTTAATAAA
ATCAAAGCGTTTATTAAAAACAACCACTTTTTGAGGTGATCCGATCACACCTCATCAAAAAGGAT
CGGTGGCGACTCCCATTTTCGTTTTCATTTCCAAAACCCAAGTCGACCCCATTTTTCATCAAAAA
AATGGTGTCAACA
Found at i:7096965 original size:92 final size:92
Alignment explanation
Indices: 7096775--7097200 Score: 566
Period size: 92 Copynumber: 4.7 Consensus size: 92
7096765 TTTCCTAATG
*
7096775 ACATTTGCTTTGTCACAACAAGGATA-TCTCCCCATTTCTCTATATATAAGCCTTCAGCTTAGAG
1 ACATTTGCTTTGTCACAACAAGGA-ACTCTCCCCATTTCTC--TATATAATCCTTCAGCTTAGAG
* * *
7096839 TCTTTTTGAGGAGACCAAGGCCCTTTCTTC
63 TCTTCTTCAGGAGACCATGGCCCTTTCTTC
*
7096869 ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGAGTCT
1 ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCT
* *
7096934 TCTTCATGAGACCATGGCGCTTTCTTC
66 TCTTCAGGAGACCATGGCCCTTTCTTC
** * * *
7096961 ACATTTGCTTTGTCACAAGGAGGAACTTTTCCCA--T-T-TAT-TGA----TCAGCTTAGAGTCT
1 ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCT
*
7097017 TCTTCATGAGACCATGGCCCTTTCTTC
66 TCTTCAGGAGACCATGGCCCTTTCTTC
* *
7097044 ACATTTGCTTTGTCACAAGAAGGAACTCTTCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCT
1 ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCT
7097109 TCTTCAGGAGACCATGGCCCTTAATTTCTTC
66 TCTTCAGGAGACCATGGCCC----TTTCTTC
* *
7097140 ACATTTGCTTTGTCACAACAAGGAGCTCTCCCCATTTCTCTATATAATCCTTTAGCTTAGA
1 ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGA
7097201 TTTACTCACT
Statistics
Matches: 298, Mismatches: 20, Indels: 26
0.87 0.06 0.08
Matches are distributed among these distances:
83 72 0.24
85 1 0.00
86 1 0.00
87 6 0.02
88 5 0.02
89 1 0.00
90 1 0.00
92 108 0.36
93 1 0.00
94 38 0.13
96 64 0.21
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.36
Consensus pattern (92 bp):
ACATTTGCTTTGTCACAACAAGGAACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCT
TCTTCAGGAGACCATGGCCCTTTCTTC
Found at i:7097122 original size:175 final size:176
Alignment explanation
Indices: 7096828--7097157 Score: 545
Period size: 175 Copynumber: 1.9 Consensus size: 176
7096818 ATATAAGCCT
* *
7096828 TCAGCTTAGAGTCTTTTTGAGGAGACCAAGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGA
1 TCAGCTTAGAGTCTTCTTCAGGAGACCAAGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGA
* * *
7096893 ACTCTCCCCATTTCTCTATATGATCCTTCAGCTTAGAGTCTTCTTCATGAGACCATGGCGC-TTT
66 ACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCATTT
7096957 CTTCACATTTGCTTTGTCACAAGGAGGAACTTTTCCCATTTATTGA
131 CTTCACATTTGCTTTGTCACAAGGAGGAACTTTTCCCATTTATTGA
* * *
7097003 TCAGCTTAGAGTCTTCTTCATGAGACCATGGCCCTTTCTTCACATTTGCTTTGTCACAAGAAGGA
1 TCAGCTTAGAGTCTTCTTCAGGAGACCAAGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGA
*
7097068 ACTCTTCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCTTAA
66 ACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCC---A
7097133 TTTCTTCACATTTGCTTTGTCACAA
128 TTTCTTCACATTTGCTTTGTCACAA
7097158 CAAGGAGCTC
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
175 117 0.82
179 25 0.18
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.36
Consensus pattern (176 bp):
TCAGCTTAGAGTCTTCTTCAGGAGACCAAGGCCCTTTCTTCACATTTGCTTTGTCACAACAAGGA
ACTCTCCCCATTTCTCTATATAATCCTTCAGCTTAGAGTCTTCTTCAGGAGACCATGGCCCATTT
CTTCACATTTGCTTTGTCACAAGGAGGAACTTTTCCCATTTATTGA
Found at i:7101327 original size:11 final size:11
Alignment explanation
Indices: 7101311--7101345 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
7101301 TATCAAATAC
7101311 GAGAACACAAT
1 GAGAACACAAT
7101322 GAGAACACAAT
1 GAGAACACAAT
7101333 GAGAACACAAT
1 GAGAACACAAT
7101344 GA
1 GA
7101346 ATATACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.17, G:0.20, T:0.09
Consensus pattern (11 bp):
GAGAACACAAT
Found at i:7102033 original size:12 final size:12
Alignment explanation
Indices: 7102018--7102051 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7102008 AAAATAAGCC
7102018 TATACATAAATA
1 TATACATAAATA
* *
7102030 TATATATACATA
1 TATACATAAATA
7102042 TATACATAAA
1 TATACATAAA
7102052 ACATATATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (12 bp):
TATACATAAATA
Found at i:7102044 original size:8 final size:8
Alignment explanation
Indices: 7102018--7102060 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
7102008 AAAATAAGCC
7102018 TATACATA
1 TATACATA
* *
7102026 AATATATA
1 TATACATA
7102034 TATACATA
1 TATACATA
7102042 TATACATA
1 TATACATA
*
7102050 -AAACATA
1 TATACATA
7102057 TATA
1 TATA
7102061 AACATTGGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (8 bp):
TATACATA
Found at i:7102198 original size:3 final size:3
Alignment explanation
Indices: 7102190--7102231 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7102180 ACAAAAGAAC
7102190 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7102232 TGAAAATAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7104067 original size:73 final size:73
Alignment explanation
Indices: 7103915--7104168 Score: 395
Period size: 73 Copynumber: 3.5 Consensus size: 73
7103905 ACATGTGAAC
* *
7103915 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA-ATTTTTGAAAACAGAAATTGAAATTACCT
*** *
7103979 CGGCGTGTCC
64 CAATGTGTCT
* *
7103989 TGAGGCTCAACTCATTTCTCGCAATATGAGTT-AAATTTTGAAAAGCAGAAATTGAAAATACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAAA-CAGAAATTGAAATTACCTC
7104053 AATGTGTCT
65 AATGTGTCT
7104062 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCA
7104127 ATGTGTCT
66 ATGTGTCT
7104135 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
7104169 TTCTTTCAAA
Statistics
Matches: 167, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
72 8 0.05
73 120 0.72
74 39 0.23
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (73 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTGAAAACAGAAATTGAAATTACCTCA
ATGTGTCT
Found at i:7104250 original size:88 final size:84
Alignment explanation
Indices: 7104101--7104524 Score: 337
Period size: 88 Copynumber: 5.1 Consensus size: 84
7104091 GTTGAATTTT
* ** * **
7104101 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAA-AGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7104166 TGATTCTTTCAAAAACATAATAA
65 TGATT-TTTGAAAAACA-AA-AA
* *
7104189 TGAAAATAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAA-AGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7104254 TGATTTTTTTTTGAAAAACAGAAA
65 TGA----TTTTTGAAAAACAAAAA
* * *
7104278 TCAAAAGGCTTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAAAG--AAATTGAAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7104343 AGTTGATTTTTG-AAAACAAAAA
62 AGTTGATTTTTGAAAAACAAAAA
** ** * ** * *
7104365 T---TTA-AAA--G-AAATACCTCGGCATGACCCAAGGCTCAACTCACCTCT-GTATTATGAGTT
1 TGAAAAAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7104422 GATTTTTGAAAAACAGAAAT
66 GATTTTTGAAAAACA-AAAA
*
7104442 TG----A-AAA--G-AAATACCTCGGCATGTGATCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 TGAAAAAGAAATTGAAAATACCTCGG--TGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
7104498 GTTGA-TTTTGAAAAACAAAAA
63 GTTGATTTTTGAAAAACAAAAA
7104519 TTGAAA
1 -TGAAA
7104525 GAATACTTCG
Statistics
Matches: 282, Mismatches: 35, Indels: 45
0.78 0.10 0.12
Matches are distributed among these distances:
75 18 0.06
76 44 0.16
77 8 0.03
78 43 0.15
79 15 0.05
81 2 0.01
87 10 0.04
88 66 0.23
89 7 0.02
90 15 0.05
91 11 0.04
92 43 0.15
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (84 bp):
TGAAAAAGAAATTGAAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAAAAA
Found at i:7104409 original size:76 final size:76
Alignment explanation
Indices: 7104317--7104586 Score: 386
Period size: 76 Copynumber: 3.6 Consensus size: 76
7104307 GTGTGTCCTG
7104317 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAAAAATTTAAAAGAAATACCT
1 AGGCTCAACTCACCTCT-GCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAAATACCT
7104381 CGGCATGACCCA
65 CGGCATGACCCA
* * * *
7104393 AGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAAGAAATACCTC
1 AGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAAATACCTC
*
7104458 GGCATGTGATCCA
66 GGCA--TGACCCA
* *
7104471 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAA-TTGAAAG-AATACTT
1 AGGCTCAACTCACCTCT-GCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAAATACCT
*
7104533 CGGCATGACCCG
65 CGGCATGACCCA
* *
7104545 AGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAAA
1 AGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTGAAAAA
7104587 AAGTAGAAAT
Statistics
Matches: 174, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
73 12 0.07
74 32 0.18
75 18 0.10
76 57 0.33
77 5 0.03
78 38 0.22
79 12 0.07
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAGAAATACCTC
GGCATGACCCA
Found at i:7104588 original size:154 final size:154
Alignment explanation
Indices: 7104295--7104602 Score: 482
Period size: 154 Copynumber: 2.0 Consensus size: 154
7104285 GCTTAATTGA
* *
7104295 AAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
1 AAATACCTCGGCATGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
7104360 AAAAATTTAAAAGAAATACCTCGGCATGACCCAAGGCTCAACTCACCTCTGTATTATGAGTTGAT
66 AAAAATTTAAAAGAAATACCTCGGCATGACCCAAGGCTCAACTCACCTCTGTATTATGAGTTGAT
7104425 TTTTGAAAAA-CAGAAATTGAAAAG
131 TTTTGAAAAAGCAGAAATT-AAAAG
7104449 AAATACCTCGGCATGTGATCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAA
1 AAATACCTCGGCATGTG-TCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAA
* * *
7104512 ACAAAAA-TTGAAAG-AATACTTCGGCATGACCCGAGGCTCAACTCACCTCTGTATTATGAGTTG
64 ACAAAAATTTAAAAGAAATACCTCGGCATGACCCAAGGCTCAACTCACCTCTGTATTATGAGTTG
*
7104575 ATTTTTGAAAAAAAGTAGAAATTAAAAG
129 ATTTTTG--AAAAAGCAGAAATTAAAAG
7104603 GTTCAACCCA
Statistics
Matches: 143, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
152 54 0.38
153 11 0.08
154 68 0.48
155 10 0.07
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (154 bp):
AAATACCTCGGCATGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
AAAAATTTAAAAGAAATACCTCGGCATGACCCAAGGCTCAACTCACCTCTGTATTATGAGTTGAT
TTTTGAAAAAGCAGAAATTAAAAG
Found at i:7104911 original size:72 final size:75
Alignment explanation
Indices: 7104821--7105004 Score: 221
Period size: 75 Copynumber: 2.5 Consensus size: 75
7104811 ATTAAAAGGT
* *** ** * * *
7104821 TCAACCCACCTCTCGCAATATGAGTTGATTTTTTGA-A-AGTAGAATTTG-AAATACCTCGGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACACACAAAAAATTGAAAATACCTCAGCGT
7104883 GCCCCGAGGC
66 GCCCCGAGGC
**
7104893 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACACAAAAAATTGAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACACACAAAAAATTGAAAATACCTCAGCGT
7104958 GCCCCGAGGC
66 GCCCCGAGGC
* *
7104968 TCAACTCACCTCTAGCAATATGAGCTGATTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAA
7105005 AGTAGAAATT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
72 30 0.32
73 1 0.01
74 7 0.08
75 51 0.55
76 4 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (75 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACACACAAAAAATTGAAAATACCTCAGCGT
GCCCCGAGGC
Found at i:7105029 original size:201 final size:202
Alignment explanation
Indices: 7104662--7105192 Score: 908
Period size: 201 Copynumber: 2.6 Consensus size: 202
7104652 CCAAACAGAT
* *
7104662 TTTGAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGGAATATGAGTTGAAATTAAA
1 TTTGAAATACCTCGGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAA
7104727 ACACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGC
64 ACACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGC
7104792 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA-TTTTTTG
129 TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTG
7104856 AAAGTAGAA
194 AAAGTAGAA
7104865 TTTGAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
1 TTTGAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
7104930 ACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTG
66 ACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTG
7104995 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAA
131 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAA
7105060 AGTAGAA
196 AGTAGAA
** *
7105067 TTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 TTTG-AAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATTAAA
* * * * *
7105132 A-A-AC-AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAG
64 ACACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
7105193 TCAATTTAAA
Statistics
Matches: 315, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
201 219 0.70
202 22 0.07
203 69 0.22
204 5 0.02
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (202 bp):
TTTGAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
ACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTG
ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGTAGAA
Found at i:7105125 original size:128 final size:125
Alignment explanation
Indices: 7104937--7105322 Score: 373
Period size: 128 Copynumber: 2.9 Consensus size: 125
7104927 AACACACAAA
* * *
7104937 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
* * *
7105002 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-GT
66 AAAA-CAGAAATTAAAAGGTTCAACCCACCTCTC-CAATATGAGTTGATTTTTTTAAAACAT
7105063 AGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 A-AA-TTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * * * ** *
7105128 TGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-TGCAATATGA
63 TGAAAAACAGAAATT--AA--A----AG-GT-T-C--A-ACCCACCTCTCCAATATG-AGT-TGA
***
7105192 GTCAATTTAAAACAT
112 -TTTTTTTAAAACAT
* * *
7105207 AAACTAAAAATACCTCGGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
7105271 AAAACAGAAATTAAAAGGTTCAACCCACCTCTCACAATATGAGTTGATTTTT
66 AAAACAGAAATTAAAAGGTTCAACCCACCTCTC-CAATATGAGTTGATTTTT
7105323 GAAAACTAGA
Statistics
Matches: 208, Mismatches: 29, Indels: 47
0.73 0.10 0.17
Matches are distributed among these distances:
125 2 0.01
126 11 0.05
127 7 0.03
128 62 0.30
129 11 0.05
130 3 0.01
131 2 0.01
132 3 0.01
136 3 0.01
137 2 0.01
138 3 0.01
139 1 0.00
140 20 0.10
141 40 0.19
142 27 0.13
143 9 0.04
144 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (125 bp):
AAATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AAAACAGAAATTAAAAGGTTCAACCCACCTCTCCAATATGAGTTGATTTTTTTAAAACAT
Found at i:7105170 original size:73 final size:70
Alignment explanation
Indices: 7105022--7105286 Score: 311
Period size: 73 Copynumber: 3.7 Consensus size: 70
7105012 ATTAAAAGGT
* ** *
7105022 TCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAACAGAAATTGAAAATACCTCGGCGTG
7105087 CCCCGAGGC
63 -CCCGAGGC
* *
7105096 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-AAAACAGAAATTGAAAATACCTCGGCGTG-
*
7105161 CCTGAGGC
63 CCCGAGGC
* * * * * *
7105169 TCAACTCACCTCTTGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCGGCGTGCCC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAATACCTCGGCGTGCCC
7105232 GAGGC
66 GAGGC
*
7105237 TCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAGAAATTGAAAA
7105287 GGTTCAACCC
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
68 29 0.18
69 29 0.18
70 4 0.02
71 13 0.08
72 8 0.05
73 54 0.33
74 27 0.16
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (70 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAATACCTCGGCGTGCCC
GAGGC
Found at i:7105423 original size:107 final size:108
Alignment explanation
Indices: 7105233--7105488 Score: 383
Period size: 107 Copynumber: 2.4 Consensus size: 108
7105223 GGCGTGCCCG
* *
7105233 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTAAAAGGTTCAACCCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGAAAAACAGAAATTAAAAGGTTCAACCCA
7105298 CCTCTCACAATATGAGTTGA-TTTTTG-AAAACTAGAAATTAAA
66 CCTCTCACAATATGAGTTGATTTTTTGAAAAAC-AGAAATTAAA
* * *
7105340 AGGTTCAACTCACCTCTCGCAATATGA-TTCAATTTTGAAAACCAGAAATTAAAAGGTTCAACTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTGAAAAACAGAAATTAAAAGGTTCAACCC
* *
7105404 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTAAA
65 ACCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
* *
7105448 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTGAAA
7105489 CTTAATTTGA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
106 2 0.01
107 76 0.57
108 40 0.30
109 16 0.12
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.30
Consensus pattern (108 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGAAAAACAGAAATTAAAAGGTTCAACCCA
CCTCTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAA
Found at i:7105456 original size:55 final size:54
Alignment explanation
Indices: 7105237--7105488 Score: 384
Period size: 53 Copynumber: 4.7 Consensus size: 54
7105227 TGCCCGAGGC
*
7105237 TCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
* *
7105290 TCAACCCACCTCTCACAATATGAGTTGATTTTTG-AAAACTAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC-AGAAATTAAAAGGT
* * *
7105344 TCAACTCACCTCTCGCAATATGA-TTCAATTTTGAAAACCAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
* *
7105397 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGGAATTAAAAGGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGT
*
7105452 TCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
7105489 CTTAATTTGA
Statistics
Matches: 180, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
53 75 0.42
54 56 0.31
55 49 0.27
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (54 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
Found at i:7105609 original size:72 final size:73
Alignment explanation
Indices: 7105494--7105654 Score: 270
Period size: 72 Copynumber: 2.2 Consensus size: 73
7105484 TGAAACTTAA
** *
7105494 TTTGAAAAGCAGATTTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAAAATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAAATG
7105559 AGTTGAAT
66 AGTTGAAT
* *
7105567 TTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAAATG
7105631 AGTTGAAT
66 AGTTGAAT
7105639 TTTGAAAAGCAGAAAT
1 TTTGAAAAGCAGAAAT
7105655 AAAAGCATCA
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
72 67 0.82
73 15 0.18
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (73 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAAATG
AGTTGAAT
Found at i:7107857 original size:32 final size:32
Alignment explanation
Indices: 7107821--7107888 Score: 79
Period size: 32 Copynumber: 2.1 Consensus size: 32
7107811 TGGCATTTGA
7107821 TTTTT-TTTTATTTTT-TTCTTGTCCTT-TTTTTC
1 TTTTTGTTTT-TTTTTGTT-TTGT-CTTCTTTTTC
*
7107853 TTTTTGTTTTTTTTTGTTTTGTTTTCTTTTTC
1 TTTTTGTTTTTTTTTGTTTTGTCTTCTTTTTC
7107885 TTTT
1 TTTT
7107889 CATGACTGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 2 0.06
32 24 0.75
33 6 0.19
ACGTcount: A:0.01, C:0.09, G:0.06, T:0.84
Consensus pattern (32 bp):
TTTTTGTTTTTTTTTGTTTTGTCTTCTTTTTC
Found at i:7107862 original size:26 final size:23
Alignment explanation
Indices: 7107821--7107889 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 23
7107811 TGGCATTTGA
*
7107821 TTTTTTT-TTATTTTTTTCTTGT
1 TTTTTTTCTTTTTTTTTTCTTGT
*
7107843 CCTTTTTTTCTTTTTGTTTTTTTTTGT
1 --TTTTTTTC-TTTT-TTTTTTCTTGT
*
7107870 TTTGTTTTCTTTTTCTTTTC
1 TTT-TTTTCTTTTTTTTTTC
7107890 ATGACTGTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 12 0.32
25 7 0.19
26 8 0.22
27 10 0.27
ACGTcount: A:0.01, C:0.10, G:0.06, T:0.83
Consensus pattern (23 bp):
TTTTTTTCTTTTTTTTTTCTTGT
Found at i:7107863 original size:15 final size:16
Alignment explanation
Indices: 7107845--7107888 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
7107835 TTTCTTGTCC
7107845 TTTTTTTCTTTTTGTT
1 TTTTTTTCTTTTTGTT
*
7107861 TTTTTTT-GTTTTGTT
1 TTTTTTTCTTTTTGTT
7107876 TTCTTTTTCTTTT
1 TT-TTTTTCTTTT
7107889 CATGACTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.38
16 12 0.50
17 3 0.12
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (16 bp):
TTTTTTTCTTTTTGTT
Found at i:7112528 original size:12 final size:12
Alignment explanation
Indices: 7112513--7112546 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7112503 AAAATAAGCC
7112513 TATACATAAATA
1 TATACATAAATA
* *
7112525 TATATATACATA
1 TATACATAAATA
7112537 TATACATAAA
1 TATACATAAA
7112547 ACATATATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (12 bp):
TATACATAAATA
Found at i:7112539 original size:8 final size:8
Alignment explanation
Indices: 7112513--7112555 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
7112503 AAAATAAGCC
7112513 TATACATA
1 TATACATA
* *
7112521 AATATATA
1 TATACATA
7112529 TATACATA
1 TATACATA
7112537 TATACATA
1 TATACATA
*
7112545 -AAACATA
1 TATACATA
7112552 TATA
1 TATA
7112556 AACATTGGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (8 bp):
TATACATA
Found at i:7112689 original size:3 final size:3
Alignment explanation
Indices: 7112681--7112728 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7112671 ACAAAAGAAC
7112681 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7112729 TGAAAATAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7116608 original size:23 final size:23
Alignment explanation
Indices: 7116582--7116645 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
7116572 TTCTTTTAAC
*
7116582 TTAATCGAACATGTTCACGGATA
1 TTAATCGAACATGTTCACGAATA
* * *
7116605 TTAAACAAACATGTTCATGAATA
1 TTAATCGAACATGTTCACGAATA
* *
7116628 TATAATTGAACAAGTTCA
1 T-TAATCGAACATGTTCA
7116646 TGAACAATGT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 20 0.62
24 12 0.38
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.31
Consensus pattern (23 bp):
TTAATCGAACATGTTCACGAATA
Found at i:7125019 original size:7 final size:7
Alignment explanation
Indices: 7125007--7125033 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7124997 GGTTTGTCTC
7125007 GATTTGG
1 GATTTGG
7125014 GATTTGG
1 GATTTGG
7125021 GATTTGG
1 GATTTGG
7125028 GATTTG
1 GATTTG
7125034 AGAATTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GATTTGG
Found at i:7126266 original size:25 final size:24
Alignment explanation
Indices: 7126229--7126276 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7126219 TTTCGATATA
*
7126229 TTAAATTATTAAAATTCTTTACAAT
1 TTAAATTACTAAAATTC-TTACAAT
*
7126254 TTAACTTACTAAAATTCTTACAA
1 TTAAATTACTAAAATTCTTACAA
7126277 AATTGTTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (24 bp):
TTAAATTACTAAAATTCTTACAAT
Found at i:7136571 original size:11 final size:12
Alignment explanation
Indices: 7136551--7136575 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7136541 AAAAAAAATC
7136551 AAAGCAAAAAAA
1 AAAGCAAAAAAA
7136563 AAAGCAAAAAAA
1 AAAGCAAAAAAA
7136575 A
1 A
7136576 GAAGGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAAAAAA
Found at i:7136731 original size:22 final size:21
Alignment explanation
Indices: 7136706--7136779 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 21
7136696 GCAGCCCAGC
*
7136706 AGAAAAAAAAAGGAAGAAAAGA
1 AGAAAAAAAAAAGAA-AAAAGA
7136728 AGAAAAAAGAAAAAGAAAAAAGGA
1 AG-AAAAA-AAAAAGAAAAAA-GA
7136752 A-AAAAGAAAAAAGAAAAAAGA
1 AGAAAA-AAAAAAGAAAAAAGA
7136773 AGAAAAA
1 AGAAAAA
7136780 GGGGGTTCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
21 4 0.09
22 22 0.48
23 10 0.22
24 10 0.22
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (21 bp):
AGAAAAAAAAAAGAAAAAAGA
Found at i:7136742 original size:6 final size:7
Alignment explanation
Indices: 7136706--7136778 Score: 87
Period size: 7 Copynumber: 10.1 Consensus size: 7
7136696 GCAGCCCAGC
7136706 AGAAAAA
1 AGAAAAA
*
7136713 A-AAAGGA
1 AGAAA-AA
7136720 AGAAAAGA
1 AGAAAA-A
7136728 AGAAAAA
1 AGAAAAA
7136735 AG-AAAA
1 AGAAAAA
7136741 AGAAAAA
1 AGAAAAA
7136748 AGGAAAAA
1 A-GAAAAA
7136756 AGAAAAA
1 AGAAAAA
7136763 AGAAAAA
1 AGAAAAA
7136770 AGAAGAAA
1 AGAA-AAA
7136778 A
1 A
7136779 AGGGGGTTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
6 9 0.16
7 28 0.48
8 21 0.36
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:7136753 original size:14 final size:14
Alignment explanation
Indices: 7136727--7136778 Score: 70
Period size: 15 Copynumber: 3.6 Consensus size: 14
7136717 GGAAGAAAAG
7136727 AAGAAAAAA-GAAA
1 AAGAAAAAAGGAAA
7136740 AAGAAAAAAGGAAAA
1 AAGAAAAAAGG-AAA
*
7136755 AAGAAAAAAGAAAA
1 AAGAAAAAAGGAAA
7136769 AAGAAGAAAA
1 AAGAA-AAAA
7136779 AGGGGGTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
13 9 0.26
14 9 0.26
15 17 0.49
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAGGAAA
Found at i:7137343 original size:18 final size:19
Alignment explanation
Indices: 7137318--7137373 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
7137308 GAAATTTTCG
**
7137318 AATTTTCGCGTTT-TCAAA
1 AATTTTCGCGTTTGAAAAA
* *
7137336 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTGAAAAA
7137355 AATTTTCGCGTTT-AAAAA
1 AATTTTCGCGTTTGAAAAA
7137373 A
1 A
7137374 TTTCTCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTTTCGCGTTTGAAAAA
Found at i:7137391 original size:37 final size:37
Alignment explanation
Indices: 7137318--7137391 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
7137308 GAAATTTTCG
* * * *
7137318 AATTTTCGCGTTTTCAAAAGTTTTCGTGTTTGAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
7137355 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATTTCAAAAA
7137392 TTGTCGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATTTCAAAAA
Found at i:7137492 original size:16 final size:16
Alignment explanation
Indices: 7137441--7137494 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
7137431 CGTGCTTTTA
7137441 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
7137457 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
7137475 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
7137491 AAAA
1 AAAA
7137495 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:7137510 original size:18 final size:18
Alignment explanation
Indices: 7137318--7137765 Score: 161
Period size: 17 Copynumber: 25.1 Consensus size: 18
7137308 GAAATTTTCG
*
7137318 AATTTTCGCGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* **
7137336 AGTTTTCGTGTTTGAAAAA
1 AATTTTCGTGTTT-TCAAA
* *
7137355 AATTTTCGCG-TTTAAAA
1 AATTTTCGTGTTTTCAAA
*
7137372 AATTTCTCGT-ATTTCAAA
1 AATTT-TCGTGTTTTCAAA
* * *
7137390 AATTGTCGT-TTTTTATA
1 AATTTTCGTGTTTTCAAA
* * *
7137407 AATCTTCGTGCTTTCAAT
1 AATTTTCGTGTTTTCAAA
**
7137425 AATCCTCGTGCTTTT-AAA
1 AATTTTCGTG-TTTTCAAA
* *
7137443 AATTCTCATG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
7137460 AATCTTCGTGTTTTC-AA
1 AATTTTCGTGTTTTCAAA
* *
7137477 AATTCTAGTG-TTTCAAA
1 AATTTTCGTGTTTTCAAA
*
7137494 AATTTTCTTGTTTTCAAAAAAA
1 AATTTTCGTGTTTTC----AAA
* *
7137516 AAATTTCGTGTTTTAAAAAAA
1 AATTTTCGTGTTTT---CAAA
7137537 AATATTTCCGTGTTTT-AAA
1 AAT-TTT-CGTGTTTTCAAA
7137556 AATTTTCGTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
* *
7137573 AATTCTCGT-ATTT--AA
1 AATTTTCGTGTTTTCAAA
* *
7137588 AATTTT--TTTTTTAAGAAA
1 AATTTTCGTGTTTT--CAAA
*
7137606 AAATTT--TG-TTTCAAAA
1 AATTTTCGTGTTTTC-AAA
* * *
7137622 AAATGTCTTGTTTT-AAA
1 AATTTTCGTGTTTTCAAA
**
7137639 AATTCCCGTG-TTTCAAAAA
1 AATTTTCGTGTTTTC--AAA
* *
7137658 AAATGTCGTGTTTT-AAGA
1 AATTTTCGTGTTTTCAA-A
* *
7137676 AAATTTCGTTTTTTTCCAAA
1 AATTTTCG-TGTTTT-CAAA
*
7137696 AATTTTCGTG-TTTCTAA
1 AATTTTCGTGTTTTCAAA
* *
7137713 AATATTCGTG-TTT-ACA
1 AATTTTCGTGTTTTCAAA
*
7137729 AATTCTCGTGTTTTCAAA
1 AATTTTCGTGTTTTCAAA
* *
7137747 AATTCTCGTATTTT-AAA
1 AATTTTCGTGTTTTCAAA
7137764 AA
1 AA
7137766 AAAAAACTTT
Statistics
Matches: 329, Mismatches: 64, Indels: 75
0.70 0.14 0.16
Matches are distributed among these distances:
13 1 0.00
14 3 0.01
15 7 0.02
16 30 0.09
17 109 0.33
18 96 0.29
19 39 0.12
20 11 0.03
21 7 0.02
22 18 0.05
23 8 0.02
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTTTCGTGTTTTCAAA
Found at i:7137518 original size:23 final size:22
Alignment explanation
Indices: 7137491--7137557 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
7137481 CTAGTGTTTC
*
7137491 AAAAATTTTCTTGTTTTCAAAAA
1 AAAAATTTTCGTGTTTT-AAAAA
7137514 AAAAA-TTTCGTGTTTTAAAAA
1 AAAAATTTTCGTGTTTTAAAAA
*
7137535 AAAATATTTCCGTGTTTTAAAAA
1 AAAA-ATTTTCGTGTTTTAAAAA
7137558 TTTTCGTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.22
22 11 0.28
23 20 0.50
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTAAAAA
Found at i:7137522 original size:22 final size:21
Alignment explanation
Indices: 7137491--7137557 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 21
7137481 CTAGTGTTTC
* *
7137491 AAAAATTTTCTTGTTTTCAAAA
1 AAAAAATTTCGTGTTTT-AAAA
7137513 AAAAAATTTCGTGTTTTAAAA
1 AAAAAATTTCGTGTTTTAAAA
7137534 AAAAATATTTCCGTGTTTTAAAA
1 AAAAA-ATTT-CGTGTTTTAAAA
7137557 A
1 A
7137558 TTTTCGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.22
22 19 0.46
23 13 0.32
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
AAAAAATTTCGTGTTTTAAAA
Found at i:7137535 original size:17 final size:17
Alignment explanation
Indices: 7137339--7137766 Score: 116
Period size: 18 Copynumber: 24.0 Consensus size: 17
7137329 TTTCAAAAGT
*
7137339 TTTCGTGTTTGAAAAAAA
1 TTTCGTGTTT-TAAAAAA
*
7137357 TTTTCGCG-TTTAAAAAA
1 -TTTCGTGTTTTAAAAAA
*
7137374 TTTC-TCGTATTTCAAAAA
1 TTTCGT-GT-TTTAAAAAA
* *
7137392 TTGTCGT-TTTTTATAAA
1 TT-TCGTGTTTTAAAAAA
* * *
7137409 TCTTCGTGCTTTCAATAA
1 T-TTCGTGTTTTAAAAAA
*
7137427 TCCTCGTGCTTTT-AAAAA
1 T-TTCGTG-TTTTAAAAAA
* *
7137445 TTCTCATG-TTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
7137462 TCTTCGTGTTTT-CAAAA
1 T-TTCGTGTTTTAAAAAA
* * *
7137479 TTCTAGTGTTTCAAAAAT
1 TT-TCGTGTTTTAAAAAA
*
7137497 TTTCTTGTTTTCAAAAAAAAAA
1 TTTCGTGTTTT-----AAAAAA
7137519 TTTCGTGTTTTAAAAAAAAATA
1 TTTCGTGTTTT----AAAAA-A
*
7137541 TTTCCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAA
7137559 TTTCGTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
*
7137575 TTCTCGT-ATTT--AAAA
1 TT-TCGTGTTTTAAAAAA
* *
7137590 TTT-TTTTTTTAAGAAAAAA
1 TTTCGTGTTTT---AAAAAA
*
7137609 TTT--TGTTTCAAAAAAA
1 TTTCGTGTTT-TAAAAAA
* *
7137625 TGTCTTGTTTT-AAAAA
1 TTTCGTGTTTTAAAAAA
* *
7137641 TTCCCGTGTTTCAAAAAAAA
1 TT-TCGTGTTT--TAAAAAA
*
7137661 TGTCGTGTTTTAAGAAAA
1 TTTCGTGTTTTAA-AAAA
* *
7137679 TTTCGTTTTTTTCCAAAAAT
1 TTTCG-TGTTTT--AAAAAA
*
7137699 TTTCGTGTTTCTAAAATA
1 TTTCGTGTTT-TAAAAAA
*
7137717 -TTCGTG-TTT-ACAAA
1 TTTCGTGTTTTAAAAAA
*
7137731 TTCTCGTGTTTTCAAAAA
1 TT-TCGTGTTTTAAAAAA
*
7137749 TTCTCGTATTTTAAAAAA
1 TT-TCGTGTTTTAAAAAA
7137767 AAAAACTTTC
Statistics
Matches: 312, Mismatches: 53, Indels: 89
0.69 0.12 0.20
Matches are distributed among these distances:
13 1 0.00
14 7 0.02
15 8 0.03
16 39 0.12
17 75 0.24
18 89 0.29
19 39 0.12
20 16 0.05
21 11 0.04
22 19 0.06
23 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAA
Found at i:7145466 original size:56 final size:56
Alignment explanation
Indices: 7145380--7145491 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
7145370 CCTTAATCCC
7145380 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
1 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
7145436 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
1 GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
7145492 TGCATATCAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (56 bp):
GATGCTTAGACGAGCCGGAGCCCTTTGGGTTTAATTCATCCAATCTCACTCTAACT
Found at i:7146917 original size:98 final size:98
Alignment explanation
Indices: 7146745--7146939 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
7146735 ACAATAAAAT
*
7146745 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
7146810 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
7146843 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
7146908 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
7146940 TTGTTTTTAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:7148108 original size:19 final size:19
Alignment explanation
Indices: 7148084--7148175 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
7148074 AATCATATAT
7148084 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
7148103 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
7148122 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
7148141 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7148160 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7148176 CTCAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7148131 original size:38 final size:38
Alignment explanation
Indices: 7148061--7148175 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
7148051 AAATTAAATC
*
7148061 TCTAAGATTACAAAATCATATATTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATC--ATA-TCTAAGATTGCATATCATA
*
7148103 TCTAAGATTATATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
7148141 TCTAGGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
7148176 CTCAAAAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 51 0.75
39 3 0.04
41 4 0.06
42 10 0.15
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:7150138 original size:25 final size:25
Alignment explanation
Indices: 7150109--7150188 Score: 63
Period size: 28 Copynumber: 3.0 Consensus size: 25
7150099 ACATTAGTAA
*
7150109 TTAATTAATTTT-TTTTTATAAATTT
1 TTAATCAATTTTATTTTTA-AAATTT
*
7150134 TTAATCATTTTTATTTTTAAAATAAATT
1 TTAATCAATTTTATTTTTAAAAT---TT
* *
7150162 TTTATCATTTTTATCATTTTAAAATTT
1 TTAATCAATTTTAT--TTTTAAAATTT
7150189 ATAAAATTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
25 14 0.30
26 6 0.13
27 2 0.04
28 15 0.33
30 9 0.20
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (25 bp):
TTAATCAATTTTATTTTTAAAATTT
Found at i:7150163 original size:28 final size:30
Alignment explanation
Indices: 7150126--7150186 Score: 99
Period size: 28 Copynumber: 2.1 Consensus size: 30
7150116 ATTTTTTTTT
7150126 ATAAATTTTTAATCATTTTTAT-TTTTAAA
1 ATAAATTTTTAATCATTTTTATATTTTAAA
7150155 ATAAATTTTT-ATCATTTTTATCATTTTAAA
1 ATAAATTTTTAATCATTTTTAT-ATTTTAAA
7150185 AT
1 AT
7150187 TTATAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 11 0.37
29 10 0.33
30 9 0.30
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (30 bp):
ATAAATTTTTAATCATTTTTATATTTTAAA
Found at i:7150194 original size:39 final size:39
Alignment explanation
Indices: 7150121--7150195 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
7150111 AATTAATTTT
* *
7150121 TTTTTATAAATTTTTAATCATTTTTATTTTTAAAATAAA
1 TTTTTATAAATTTTTAATCATTTTAATTTATAAAATAAA
*
7150160 TTTTTAT-CATTTTT-ATCATTTTAAAATTTATAAAAT
1 TTTTTATAAATTTTTAATCATTTT--AATTTATAAAAT
7150196 TTTAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 8 0.26
38 6 0.19
39 17 0.55
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (39 bp):
TTTTTATAAATTTTTAATCATTTTAATTTATAAAATAAA
Found at i:7151858 original size:21 final size:20
Alignment explanation
Indices: 7151820--7151887 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
7151810 AAAACCCTTG
*
7151820 AAATTTA-AATATTGTTTTTGA
1 AAATTTATAA-ATTATTTTT-A
7151841 AAATTTATAAATTATTTTTA
1 AAATTTATAAATTATTTTTA
* * *
7151861 AACTTTTTAAAATATTTTTA
1 AAATTTATAAATTATTTTTA
7151881 TAAATTT
1 -AAATTT
7151888 TACATTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 18 0.45
21 20 0.50
22 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (20 bp):
AAATTTATAAATTATTTTTA
Found at i:7151879 original size:20 final size:20
Alignment explanation
Indices: 7151834--7151887 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
7151824 TTAAATATTG
*
7151834 TTTTTGAAAATTTATAAATTA
1 TTTTT-AAAATTTATAAAATA
* *
7151855 TTTTTAAACTTTTTAAAATA
1 TTTTTAAAATTTATAAAATA
7151875 TTTTTATAAATTT
1 TTTTTA-AAATTT
7151888 TACATTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTTTAAAATTTATAAAATA
Found at i:7155122 original size:13 final size:13
Alignment explanation
Indices: 7155106--7155134 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7155096 AAAGCTAAAA
7155106 TTAAAACTTGTAT
1 TTAAAACTTGTAT
7155119 TT-AAACTTGTAT
1 TTAAAACTTGTAT
7155131 TTAA
1 TTAA
7155135 TCATTTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.80
13 3 0.20
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAAAACTTGTAT
Found at i:7155126 original size:12 final size:12
Alignment explanation
Indices: 7155109--7155134 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7155099 GCTAAAATTA
7155109 AAACTTGTATTT
1 AAACTTGTATTT
7155121 AAACTTGTATTT
1 AAACTTGTATTT
7155133 AA
1 AA
7155135 TCATTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (12 bp):
AAACTTGTATTT
Found at i:7169305 original size:51 final size:51
Alignment explanation
Indices: 7169208--7169305 Score: 115
Period size: 51 Copynumber: 1.9 Consensus size: 51
7169198 ACGATATATG
* ** * ** **
7169208 GCGTAAGACCATAGATGAAAGATGTTATGGTAGTTTGATATGAGGTACGTA
1 GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTACGTA
*
7169259 GCGTAAGACCATGGATGAAAGACGCCATGGCAGCATGATACAAGGTA
1 GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTA
7169306 AATGTATATA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (51 bp):
GCGTAAGACCATAGATGAAAGACGCCATGGCAGCATGATACAAGGTACGTA
Found at i:7169496 original size:33 final size:33
Alignment explanation
Indices: 7169470--7169547 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
7169460 TAGTCTGCTG
*
7169470 GGACAGTAAACACATAACATAGATAGTCTACCA
1 GGACAATAAACACATAACATAGATAGTCTACCA
* * *
7169503 GGACAATATACACATAACATATATAATCTACCA
1 GGACAATAAACACATAACATAGATAGTCTACCA
7169536 GGACAATAAACA
1 GGACAATAAACA
7169548 TGAGTTAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (33 bp):
GGACAATAAACACATAACATAGATAGTCTACCA
Found at i:7171928 original size:13 final size:13
Alignment explanation
Indices: 7171789--7171973 Score: 97
Period size: 13 Copynumber: 13.7 Consensus size: 13
7171779 ATATTTTGTG
7171789 TAAACATTTCATA
1 TAAACATTTCATA
* *
7171802 TAATCGTTTCATA
1 TAAACATTTCATA
*
7171815 T-ATCTATTTCCATATA
1 TAAAC-ATTT-C--ATA
*
7171831 TAAACGTTTCATA
1 TAAACATTTCATA
* *
7171844 TAATCGTTTCATA
1 TAAACATTTCATA
*
7171857 T-ATCTATTTCCATA
1 TAAAC-ATTT-CATA
*
7171871 TAAACATTTTATA
1 TAAACATTTCATA
* *
7171884 TAATCGTTTCATA
1 TAAACATTTCATA
*
7171897 T-ATCTATTTCCATATA
1 TAAAC-ATTT-C--ATA
7171913 TAAACATTTCATA
1 TAAACATTTCATA
* *
7171926 TAACCATTTCATC
1 TAAACATTTCATA
*
7171939 TAAACATTTCATT
1 TAAACATTTCATA
* * *
7171952 TTACCATTTCATT
1 TAAACATTTCATA
*
7171965 TACACATTT
1 TAAACATTT
7171974 AACACATAAT
Statistics
Matches: 136, Mismatches: 23, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
12 9 0.07
13 93 0.68
14 11 0.08
15 4 0.03
16 15 0.11
17 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.02, T:0.45
Consensus pattern (13 bp):
TAAACATTTCATA
Found at i:7171948 original size:42 final size:42
Alignment explanation
Indices: 7171789--7171937 Score: 248
Period size: 42 Copynumber: 3.6 Consensus size: 42
7171779 ATATTTTGTG
7171789 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
*
7171831 TAAACGTTTCATATAATCGTTTCATATATCTATTTCC--ATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
*
7171871 TAAACATTTTATATAATCGTTTCATATATCTATTTCCATATA
1 TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
* *
7171913 TAAACATTTCATATAACCATTTCAT
1 TAAACATTTCATATAATCGTTTCAT
7171938 CTAAACATTT
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
40 38 0.38
42 61 0.62
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.45
Consensus pattern (42 bp):
TAAACATTTCATATAATCGTTTCATATATCTATTTCCATATA
Found at i:7176495 original size:21 final size:22
Alignment explanation
Indices: 7176448--7176492 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7176438 CATTATGGAG
**
7176448 TTAAATTTTTATTTTTTATTTT
1 TTAAATTTTTATTTCATATTTT
7176470 TTAAATTTTTATTTCATATTTT
1 TTAAATTTTTATTTCATATTTT
7176492 T
1 T
7176493 AAAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TTAAATTTTTATTTCATATTTT
Found at i:7180295 original size:7 final size:6
Alignment explanation
Indices: 7180245--7180274 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7180235 GAGGATATTC
7180245 TTTTTA CTTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTT
7180275 TAAATTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:7180466 original size:10 final size:10
Alignment explanation
Indices: 7180453--7180486 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7180443 TAAAAAGTTT
7180453 AAAAATTAAA
1 AAAAATTAAA
7180463 AAAAATT-AA
1 AAAAATTAAA
*
7180472 TAAAATTAAA
1 AAAAATTAAA
7180482 AAAAA
1 AAAAA
7180487 GTTTAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:7180466 original size:19 final size:19
Alignment explanation
Indices: 7180444--7180492 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
7180434 TTTAATTATT
7180444 AAAAAGTTTAAAAATTAAA
1 AAAAAGTTTAAAAATTAAA
*
7180463 AAAAA-TTAATAAAATTAAA
1 AAAAAGTTTA-AAAATTAAA
7180482 AAAAAGTTTAA
1 AAAAAGTTTAA
7180493 TAAAGTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 3 0.12
19 20 0.77
20 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAAGTTTAAAAATTAAA
Found at i:7182177 original size:28 final size:28
Alignment explanation
Indices: 7182145--7182200 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
7182135 ACAAAATTGA
* *
7182145 ATAGTT-GAGTGACTATTTTATAATTTTC
1 ATAGTTAGA-TGACCATTTTATAACTTTC
*
7182173 ATAGTTAGATGACCATTTTGTAACTTTC
1 ATAGTTAGATGACCATTTTATAACTTTC
7182201 CATAATTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (28 bp):
ATAGTTAGATGACCATTTTATAACTTTC
Found at i:7191490 original size:31 final size:31
Alignment explanation
Indices: 7191455--7191521 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
7191445 TGTACTCATA
7191455 TCTGCTTGATTATTTGTGTTTAACATAATTC
1 TCTGCTTGATTATTTGTGTTTAACATAATTC
7191486 TCTGCTTGATTATTTGTGTTTAACATAATTC
1 TCTGCTTGATTATTTGTGTTTAACATAATTC
7191517 TCTGC
1 TCTGC
7191522 CATCTACTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (31 bp):
TCTGCTTGATTATTTGTGTTTAACATAATTC
Found at i:7195410 original size:22 final size:21
Alignment explanation
Indices: 7195370--7195425 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
7195360 ATTCTATTAT
7195370 AATT-TATTTCAAATATATAAC
1 AATTATATTT-AAATATATAAC
* *
7195391 ATTATATATTTAAATTTATAAC
1 AAT-TATATTTAAATATATAAC
7195413 AATTATATTTAAA
1 AATTATATTTAAA
7195426 AAATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 12 0.40
22 13 0.43
23 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTATATTTAAATATATAAC
Found at i:7195417 original size:23 final size:23
Alignment explanation
Indices: 7195374--7195420 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
7195364 TATTATAATT
7195374 TATTTCAAATATATAACATTATA
1 TATTTCAAATATATAACATTATA
*
7195397 TATTT-AAATTTATAACAATTATA
1 TATTTCAAATATATAAC-ATTATA
7195420 T
1 T
7195421 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTTCAAATATATAACATTATA
Found at i:7195433 original size:11 final size:11
Alignment explanation
Indices: 7195417--7195442 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7195407 TATAACAATT
7195417 ATATTTAAAAA
1 ATATTTAAAAA
7195428 ATATTTAAAAA
1 ATATTTAAAAA
7195439 ATAT
1 ATAT
7195443 AAATTATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATATTTAAAAA
Found at i:7208454 original size:15 final size:15
Alignment explanation
Indices: 7208430--7208459 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7208420 ATGTTATAGC
7208430 ATATAAATTTGAAAA
1 ATATAAATTTGAAAA
*
7208445 ATATAGATTTGAAAA
1 ATATAAATTTGAAAA
7208460 CTTTTTCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
ATATAAATTTGAAAA
Found at i:7208858 original size:69 final size:73
Alignment explanation
Indices: 7208733--7208872 Score: 216
Period size: 69 Copynumber: 2.0 Consensus size: 73
7208723 AGTTGACTCG
* * *
7208733 AAAAATTTGAATAACTCAAAATTTGATTTTTTTTAATATTTTTTTCAAATCGAATCGTATTTTAC
1 AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
7208798 TCACCCTT
66 TCACCCTT
*
7208806 AAAAA-TTAAATAACTTAAAATTCGA-TTTTTTT-AT-TTTTTTTCAAATCAAATCGTATTTTAC
1 AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
7208867 TCACCC
66 TCACCC
7208873 CTACAAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
69 32 0.51
70 2 0.03
71 7 0.11
72 17 0.27
73 5 0.08
ACGTcount: A:0.36, C:0.14, G:0.04, T:0.46
Consensus pattern (73 bp):
AAAAATTTAAATAACTCAAAATTCGATTTTTTTTAATATTTTTTTCAAATCAAATCGTATTTTAC
TCACCCTT
Found at i:7212656 original size:12 final size:12
Alignment explanation
Indices: 7212639--7212691 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
7212629 TAAATGTACC
*
7212639 TTCTTCATTTTG
1 TTCTTCTTTTTG
*
7212651 TTCTTCTTTTTT
1 TTCTTCTTTTTG
*
7212663 TTATTCTTTTTG
1 TTCTTCTTTTTG
* *
7212675 TTCTTGTTCTTG
1 TTCTTCTTTTTG
7212687 TTCTT
1 TTCTT
7212692 GTTCGTATCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.04, C:0.15, G:0.08, T:0.74
Consensus pattern (12 bp):
TTCTTCTTTTTG
Found at i:7215039 original size:20 final size:20
Alignment explanation
Indices: 7215001--7215039 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7214991 AAAAGCAGTT
*
7215001 CACCGGGAAAGCCCATTGAC
1 CACCGGGAAAACCCATTGAC
*
7215021 CACCGGGAAAACCCTTTGA
1 CACCGGGAAAACCCATTGA
7215040 TCATCATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (20 bp):
CACCGGGAAAACCCATTGAC
Found at i:7233590 original size:17 final size:18
Alignment explanation
Indices: 7233549--7233594 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
7233539 TTTAACTTTT
7233549 AATTATTTAAAAAATCAAA
1 AATTATTT-AAAAATCAAA
7233568 AA--ATTTAAAAAT-AAA
1 AATTATTTAAAAATCAAA
7233583 AATTATTTAAAA
1 AATTATTTAAAA
7233595 GGTATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.20
16 6 0.24
17 12 0.48
19 2 0.08
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (18 bp):
AATTATTTAAAAATCAAA
Found at i:7238555 original size:26 final size:26
Alignment explanation
Indices: 7238518--7238568 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7238508 TTGTAATCAA
* * *
7238518 AAAAATTTTAAAATTAAAAATAAATT
1 AAAAATTATAAAATAAAAAAAAAATT
7238544 AAAAATTATAAAATAAAAAAAAAAT
1 AAAAATTATAAAATAAAAAAAAAAT
7238569 AATTTTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (26 bp):
AAAAATTATAAAATAAAAAAAAAATT
Found at i:7238566 original size:19 final size:18
Alignment explanation
Indices: 7238527--7238568 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
7238517 AAAAAATTTT
**
7238527 AAAATTAAAAATAAATTA
1 AAAATTAAAAATAAAAAA
7238545 AAAATTATAAAATAAAAAA
1 AAAATTA-AAAATAAAAAA
7238564 AAAAT
1 AAAAT
7238569 AATTTTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATTAAAAATAAAAAA
Found at i:7244914 original size:18 final size:18
Alignment explanation
Indices: 7244893--7244927 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7244883 CTTTTTAAAC
7244893 TCAATTCAAATT-TTTAAT
1 TCAATT-AAATTATTTAAT
7244911 TCAATTAAATTATTTAA
1 TCAATTAAATTATTTAA
7244928 AAAACCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
TCAATTAAATTATTTAAT
Found at i:7245755 original size:17 final size:19
Alignment explanation
Indices: 7245735--7245780 Score: 64
Period size: 17 Copynumber: 2.6 Consensus size: 19
7245725 TTTTTATACC
7245735 TTTTAAATAATTTTT-A-T
1 TTTTAAATAATTTTTGATT
7245752 TTTTAAAT--TTTTTGATT
1 TTTTAAATAATTTTTGATT
7245769 TTTTAAATAATT
1 TTTTAAATAATT
7245781 AAAAGTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.20
16 1 0.04
17 17 0.68
19 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTAAATAATTTTTGATT
Found at i:7258012 original size:12 final size:12
Alignment explanation
Indices: 7257967--7258019 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
7257957 AGATACGAAC
* *
7257967 AAGAACAAGAAC
1 AAGAACAAAAAG
7257979 AAGAACAAAAAG
1 AAGAACAAAAAG
* *
7257991 AATAAAAAAAAG
1 AAGAACAAAAAG
*
7258003 AAGAACAAAATG
1 AAGAACAAAAAG
7258015 AAGAA
1 AAGAA
7258020 GGTACATTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.74, C:0.08, G:0.15, T:0.04
Consensus pattern (12 bp):
AAGAACAAAAAG
Found at i:7261891 original size:72 final size:70
Alignment explanation
Indices: 7261763--7261902 Score: 210
Period size: 69 Copynumber: 2.0 Consensus size: 70
7261753 TTTTTTGTAG
* * *
7261763 GGGTGAGTAAAATACGATTTGATTTGAAAAAAAATAAAAAAATCGAATTTTAAGTTATT-TAATT
1 GGGTGAGTAAAATACGATTCGATTTGAAAAAAAATAAAAAAATCAAATTTTAAGTTATTCAAATT
7261827 TTTAA
66 TTTAA
*
7261832 GGGTGAGTAAAATACGATTCGATTTGAAAAAAATATTAAAAAAAATCAAATTTTGAGTTATTCAA
1 GGGTGAGTAAAATACGATTCGATTTGAAAAAAA-A-T-AAAAAAATCAAATTTTAAGTTATTCAA
7261897 ATTTTT
63 ATTTTT
7261903 CGAGTCAACT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
69 32 0.51
70 1 0.02
71 1 0.02
72 22 0.35
73 7 0.11
ACGTcount: A:0.46, C:0.04, G:0.14, T:0.36
Consensus pattern (70 bp):
GGGTGAGTAAAATACGATTCGATTTGAAAAAAAATAAAAAAATCAAATTTTAAGTTATTCAAATT
TTTAA
Found at i:7273935 original size:17 final size:17
Alignment explanation
Indices: 7273908--7273950 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7273898 ACTTTTAATT
7273908 ATTTAAAAAATCAAAAA-A
1 ATTT-AAAAAT-AAAAATA
*
7273926 ATTTAAAAATAAAAATT
1 ATTTAAAAATAAAAATA
7273943 ATTTAAAA
1 ATTTAAAA
7273951 GGTATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 14 0.61
18 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
ATTTAAAAATAAAAATA
Found at i:7273950 original size:26 final size:26
Alignment explanation
Indices: 7273921--7273972 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7273911 TAAAAAATCA
*
7273921 AAAAAATTTAAAAATA-AAAATTATTT
1 AAAAAATATAAAAATATAAAA-TATTT
**
7273947 AAAAGGTATAAAAATATAAAATATTT
1 AAAAAATATAAAAATATAAAATATTT
7273973 TTTTAAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (26 bp):
AAAAAATATAAAAATATAAAATATTT
Found at i:7274775 original size:18 final size:18
Alignment explanation
Indices: 7274754--7274788 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7274744 TTTGGGTTTT
7274754 TTAAATAATTT-AATTGAA
1 TTAAA-AATTTGAATTGAA
7274772 TTAAAAATTTGAATTGA
1 TTAAAAATTTGAATTGA
7274789 GTTTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTAAAAATTTGAATTGAA
Found at i:7278980 original size:23 final size:23
Alignment explanation
Indices: 7278954--7278997 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7278944 TTATTTTTTG
*
7278954 AATTCT-TTGAAATTTAATTTTAA
1 AATTCTATTCAAA-TTAATTTTAA
*
7278977 AATTTTATTCAAATTAATTTT
1 AATTCTATTCAAATTAATTTT
7278998 TAGGACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (23 bp):
AATTCTATTCAAATTAATTTTAA
Found at i:7281778 original size:17 final size:17
Alignment explanation
Indices: 7281741--7281788 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
7281731 TGCTAGCCTT
7281741 TCAATGTTGTTC-CAACA
1 TCAA-GTTGTTCTCAACA
7281758 --AAGTTGTTCTCAACA
1 TCAAGTTGTTCTCAACA
*
7281773 TCAAGTTGTTTTCAAC
1 TCAAGTTGTTCTCAAC
7281789 GGGATTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.26
15 7 0.26
17 13 0.48
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (17 bp):
TCAAGTTGTTCTCAACA
Found at i:7297298 original size:19 final size:19
Alignment explanation
Indices: 7297253--7297300 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
7297243 GTTTTTGGGG
* *
7297253 TTTGGGAGG-AGTAAAATT
1 TTTGGGGGGAAGTAAAAGT
**
7297271 TTTTAGGGGAAGTAAAAGT
1 TTTGGGGGGAAGTAAAAGT
7297290 TTTGGGGGGAA
1 TTTGGGGGGAA
7297301 AATAAAAGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (19 bp):
TTTGGGGGGAAGTAAAAGT
Found at i:7308890 original size:18 final size:18
Alignment explanation
Indices: 7308848--7308903 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
7308838 ATTAACTTTT
7308848 AATTATTTAAAAAATTAAA
1 AATTATTTAAAAAA-TAAA
7308867 AA--ATTTAAAAAATAAA
1 AATTATTTAAAAAATAAA
*
7308883 AATTATTTAAAATATAAA
1 AATTATTTAAAAAATAAA
7308901 AAT
1 AAT
7308904 ATAAAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 6 0.18
17 10 0.29
18 16 0.47
19 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AATTATTTAAAAAATAAA
Found at i:7308894 original size:25 final size:27
Alignment explanation
Indices: 7308866--7308924 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
7308856 AAAAAATTAA
7308866 AAAATTTAAAAA-ATAAAA-ATTATTT
1 AAAATTTAAAAATATAAAATATTATTT
* *
7308891 AAAATATAAAAATATAAAATATTTTTT
1 AAAATTTAAAAATATAAAATATTATTT
7308918 AAAATTT
1 AAAATTT
7308925 TTAACATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 11 0.38
26 6 0.21
27 12 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
AAAATTTAAAAATATAAAATATTATTT
Found at i:7308910 original size:15 final size:15
Alignment explanation
Indices: 7308865--7308912 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
7308855 TAAAAAATTA
* *
7308865 AAAAATTTAAAAAAT
1 AAAAATATAAAATAT
7308880 AAAAATTATTTAAAATAT
1 AAAAA-TA--TAAAATAT
7308898 AAAAATATAAAATAT
1 AAAAATATAAAATAT
7308913 TTTTTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 13 0.46
16 1 0.04
17 2 0.07
18 12 0.43
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATATAAAATAT
Found at i:7309510 original size:18 final size:18
Alignment explanation
Indices: 7309489--7309523 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7309479 TTTGGGTTTT
7309489 TTAAATAATTT-AATTGAA
1 TTAAA-AATTTGAATTGAA
7309507 TTAAAAATTTGAATTGA
1 TTAAAAATTTGAATTGA
7309524 GTTTAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTAAAAATTTGAATTGAA
Found at i:7313662 original size:23 final size:23
Alignment explanation
Indices: 7313636--7313679 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7313626 TTATTTTTTG
*
7313636 AATTCT-TTGAAATTTAATTTTAA
1 AATTCTATTCAAA-TTAATTTTAA
*
7313659 AATTTTATTCAAATTAATTTT
1 AATTCTATTCAAATTAATTTT
7313680 TAGGACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (23 bp):
AATTCTATTCAAATTAATTTTAA
Found at i:7313957 original size:26 final size:27
Alignment explanation
Indices: 7313896--7313957 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
7313886 AATTATTTTT
* *
7313896 AAAATTTAAAAATTCAAAAAATATAAA
1 AAAATTTAAAAAGTCAAAAAATAAAAA
* *
7313923 ATATTTTAAAAAGT-AAAAAATAAAAA
1 AAAATTTAAAAAGTCAAAAAATAAAAA
*
7313949 AAAAATTAA
1 AAAATTTAA
7313958 TTTTTTAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (27 bp):
AAAATTTAAAAAGTCAAAAAATAAAAA
Found at i:7316460 original size:17 final size:17
Alignment explanation
Indices: 7316423--7316470 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
7316413 TGCTAGCCTT
7316423 TCAATGTTGTTC-CAACA
1 TCAA-GTTGTTCTCAACA
7316440 --AAGTTGTTCTCAACA
1 TCAAGTTGTTCTCAACA
*
7316455 TCAAGTTGTTTTCAAC
1 TCAAGTTGTTCTCAAC
7316471 GGGATTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.26
15 7 0.26
17 13 0.48
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (17 bp):
TCAAGTTGTTCTCAACA
Found at i:7332024 original size:18 final size:19
Alignment explanation
Indices: 7331977--7332025 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
7331967 GTTTTGGGGG
*
7331977 TTTGGGAGGAAGTAAAATTT
1 TTTGGG-GGAAGTAAAATGT
7331997 TTTAGGGGGAAGTAAAA-GT
1 TTT-GGGGGAAGTAAAATGT
7332016 TTTGGGGGAA
1 TTTGGGGGAA
7332026 AATAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 7 0.26
19 4 0.15
20 13 0.48
21 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.31
Consensus pattern (19 bp):
TTTGGGGGAAGTAAAATGT
Found at i:7332049 original size:75 final size:71
Alignment explanation
Indices: 7331926--7332085 Score: 205
Period size: 75 Copynumber: 2.2 Consensus size: 71
7331916 TTGGGGTTGG
* * *
7331926 GGGGGAAGTAAAAGTTTTTGGAAGAAAATAGAAGGAAAAACGTTTTGGGGGTTTGGGAGGAAGTA
1 GGGGGAAGTAAAAGTTTTTGGAAGAAAATAAAAAGAAAAACATTTT-GGGGTTTGGG-GGAAGTA
7331991 AAATTTTTT
64 AAA-TTTTT
** *
7332000 AGGGGGAAGTAAAAG-TTTTGGGGGAAAATAAAAAAGAAAAATATTTTGGGGTTTGGGGGAAGTA
1 -GGGGGAAGTAAAAGTTTTTGGAAGAAAAT-AAAAAGAAAAACATTTTGGGGTTTGGGGGAAGTA
7332064 AAATTTTT
64 AAATTTTT
*
7332072 GGGGAAAGTAAAAG
1 GGGGGAAGTAAAAG
7332086 GGTTTTTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
71 13 0.17
72 5 0.06
73 10 0.13
74 22 0.29
75 27 0.35
ACGTcount: A:0.39, C:0.01, G:0.34, T:0.26
Consensus pattern (71 bp):
GGGGGAAGTAAAAGTTTTTGGAAGAAAATAAAAAGAAAAACATTTTGGGGTTTGGGGGAAGTAAA
ATTTTT
Found at i:7334594 original size:25 final size:25
Alignment explanation
Indices: 7334566--7334644 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
7334556 TGCTTTCACA
7334566 AGCTATGAATCGGTAAGCTCATACG
1 AGCTATGAATCGGTAAGCTCATACG
7334591 AGCTATGAATCGGTAAGCTC-TCACG
1 AGCTATGAATCGGTAAGCTCAT-ACG
** *
7334616 AGCTACAAATCAGTAAGCTCATACG
1 AGCTATGAATCGGTAAGCTCATACG
7334641 AGCT
1 AGCT
7334645 GTGGTGTGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (25 bp):
AGCTATGAATCGGTAAGCTCATACG
Found at i:7334620 original size:50 final size:50
Alignment explanation
Indices: 7334534--7334644 Score: 141
Period size: 50 Copynumber: 2.2 Consensus size: 50
7334524 ACATGTATGG
* * * ** *
7334534 TCATTCGAGCTATAAATCGATATGCTTTCACAAGCTATGAATCGGTAAGC
1 TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
* * *
7334584 TCATACGAGCTATGAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGC
1 TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
7334634 TCATACGAGCT
1 TCATACGAGCT
7334645 GTGGTGTGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (50 bp):
TCATACGAGCTATAAATCGATAAGCTCTCACAAGCTACAAATCAGTAAGC
Found at i:7340442 original size:22 final size:22
Alignment explanation
Indices: 7340414--7340458 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7340404 GGTATGAAAA
7340414 GATAGTTGATTGAAGGATTGAT
1 GATAGTTGATTGAAGGATTGAT
7340436 GATAGTTGATTGAAGGATTGAT
1 GATAGTTGATTGAAGGATTGAT
7340458 G
1 G
7340459 TTGTTGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (22 bp):
GATAGTTGATTGAAGGATTGAT
Found at i:7343344 original size:23 final size:22
Alignment explanation
Indices: 7343318--7343361 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
7343308 CATGCTCGGT
*
7343318 TTAGTTCTAGAACCGACTAAATC
1 TTAGCTCTAGAACC-ACTAAATC
* *
7343341 TTAGCTCTGGTACCACTAAAT
1 TTAGCTCTAGAACCACTAAAT
7343362 GTAATACCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (22 bp):
TTAGCTCTAGAACCACTAAATC
Found at i:7346491 original size:41 final size:41
Alignment explanation
Indices: 7346441--7346522 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
7346431 ATATGAAGAG
7346441 ATTTATGTCTTTTGGATATTGGATGTGAGATGTGATGAAGC
1 ATTTATGTCTTTTGGATATTGGATGTGAGATGTGATGAAGC
7346482 ATTTATGTCTTTTGGATATTGGATGTGAGATGTGATGAAGC
1 ATTTATGTCTTTTGGATATTGGATGTGAGATGTGATGAAGC
7346523 TGATCATCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.05, G:0.29, T:0.41
Consensus pattern (41 bp):
ATTTATGTCTTTTGGATATTGGATGTGAGATGTGATGAAGC
Found at i:7348907 original size:21 final size:21
Alignment explanation
Indices: 7348852--7348907 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
7348842 ATATTAAATT
7348852 TTACAACACCAAAATAGCATA
1 TTACAACACCAAAATAGCATA
** * **
7348873 TTTTAAAAAGAAAATAGCATA
1 TTACAACACCAAAATAGCATA
7348894 TTACAACACCAAAA
1 TTACAACACCAAAA
7348908 AAGTTTTACC
Statistics
Matches: 25, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.21
Consensus pattern (21 bp):
TTACAACACCAAAATAGCATA
Found at i:7349409 original size:27 final size:27
Alignment explanation
Indices: 7349373--7349427 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7349363 AATCGTATAA
7349373 ATATATGATATTTGGTACACTGACGAT
1 ATATATGATATTTGGTACACTGACGAT
7349400 ATATATGATATTTGGTACACTGACGAT
1 ATATATGATATTTGGTACACTGACGAT
7349427 A
1 A
7349428 GAGTTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (27 bp):
ATATATGATATTTGGTACACTGACGAT
Found at i:7353319 original size:23 final size:22
Alignment explanation
Indices: 7353276--7353319 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
7353266 TTCTACGTCG
7353276 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
7353299 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
7353320 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:7353428 original size:45 final size:45
Alignment explanation
Indices: 7353364--7353452 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7353354 AACAGATACT
* *
7353364 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
7353409 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAGTGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
7353453 TCGTAGTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:7356570 original size:20 final size:20
Alignment explanation
Indices: 7356545--7356588 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
7356535 AAGAATCAAT
7356545 AATAAAGGATTTGTATTCCC
1 AATAAAGGATTTGTATTCCC
7356565 AATAAAGGATTTGTATTCCC
1 AATAAAGGATTTGTATTCCC
7356585 AATA
1 AATA
7356589 GGAACATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
AATAAAGGATTTGTATTCCC
Found at i:7365946 original size:41 final size:41
Alignment explanation
Indices: 7365883--7365968 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 41
7365873 TCAGCATTAA
*
7365883 ATTTTTTTAATCTTTTTGTTCTCGAAGAATTGAGAAAGTTC
1 ATTTTTTTAATCTTTTTGTTCTCAAAGAATTGAGAAAGTTC
*
7365924 ATTTTTTTAAT-TTTGTTTTTCTCAAAGAATTGAGAAAGTTC
1 ATTTTTTTAATCTTT-TTGTTCTCAAAGAATTGAGAAAGTTC
7365965 ATTT
1 ATTT
7365969 GTTTCTTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 3 0.07
41 39 0.93
ACGTcount: A:0.28, C:0.08, G:0.13, T:0.51
Consensus pattern (41 bp):
ATTTTTTTAATCTTTTTGTTCTCAAAGAATTGAGAAAGTTC
Found at i:7366398 original size:22 final size:22
Alignment explanation
Indices: 7366372--7366427 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 22
7366362 TATGTAATTT
*
7366372 ATATTATTATTTAAAACAACAA
1 ATATTATTATTTAAAACAAAAA
*
7366394 ATATT-TT-TATAAAACAAAAA
1 ATATTATTATTTAAAACAAAAA
7366414 ATATATATATATTT
1 ATAT-TAT-TATTT
7366428 TAAGGGTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 15 0.56
21 3 0.11
22 6 0.22
23 1 0.04
24 2 0.07
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
ATATTATTATTTAAAACAAAAA
Found at i:7368618 original size:31 final size:31
Alignment explanation
Indices: 7368583--7368684 Score: 147
Period size: 31 Copynumber: 3.4 Consensus size: 31
7368573 ACTACAAAAA
7368583 TAGTCACTTTTATTTGTATCAAATTACATTT
1 TAGTCACTTTTATTTGTATCAAATTACATTT
* *
7368614 TAGTCACTTTTGTTTG-A--AATGTTACATTT
1 TAGTCACTTTTATTTGTATCAA-ATTACATTT
7368643 TAGTCACTTTTATTTGTATCAAATTACATTT
1 TAGTCACTTTTATTTGTATCAAATTACATTT
*
7368674 TAGGCACTTTT
1 TAGTCACTTTT
7368685 GTTTAAATGT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
28 2 0.03
29 23 0.37
30 2 0.03
31 33 0.53
32 2 0.03
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (31 bp):
TAGTCACTTTTATTTGTATCAAATTACATTT
Found at i:7368645 original size:29 final size:29
Alignment explanation
Indices: 7368606--7368710 Score: 142
Period size: 29 Copynumber: 3.6 Consensus size: 29
7368596 TTGTATCAAA
7368606 TTACATTTTAGTCACTTTTGTTTGAAATG
1 TTACATTTTAGTCACTTTTGTTTGAAATG
* *
7368635 TTACATTTTAGTCACTTTTATTTGTATCAA-A
1 TTACATTTTAGTCACTTTTGTTTG-A--AATG
*
7368666 TTACATTTTAGGCACTTTTGTTT-AAATG
1 TTACATTTTAGTCACTTTTGTTTGAAATG
7368694 TTACATTTTAGTCACTT
1 TTACATTTTAGTCACTT
7368711 ACATTATTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
27 2 0.03
28 16 0.24
29 24 0.36
30 1 0.02
31 21 0.32
32 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.51
Consensus pattern (29 bp):
TTACATTTTAGTCACTTTTGTTTGAAATG
Found at i:7368654 original size:60 final size:59
Alignment explanation
Indices: 7368583--7368710 Score: 238
Period size: 60 Copynumber: 2.2 Consensus size: 59
7368573 ACTACAAAAA
*
7368583 TAGTCACTTTTATTTGTATCAAATTACATTTTAGTCACTTTTGTTTGAAATGTTACATTT
1 TAGTCACTTTTATTTGTATCAAATTACATTTTAGGCACTTTTGTTT-AAATGTTACATTT
7368643 TAGTCACTTTTATTTGTATCAAATTACATTTTAGGCACTTTTGTTTAAATGTTACATTT
1 TAGTCACTTTTATTTGTATCAAATTACATTTTAGGCACTTTTGTTTAAATGTTACATTT
7368702 TAGTCACTT
1 TAGTCACTT
7368711 ACATTATTGT
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
59 22 0.33
60 45 0.67
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (59 bp):
TAGTCACTTTTATTTGTATCAAATTACATTTTAGGCACTTTTGTTTAAATGTTACATTT
Found at i:7370201 original size:72 final size:72
Alignment explanation
Indices: 7370062--7370193 Score: 205
Period size: 72 Copynumber: 1.9 Consensus size: 72
7370052 TTATAAAATA
*
7370062 AAACGTAGTTTTCTTGCTACCCTTTGCCTCTTTAAATTTCCTTTTATTTTTGCCCAAACTTTAAA
1 AAACGTAGTTTTCTTGCTACCCTTTGCCTCTTTAAATTTCCTTTTAATTTTGCCCAAACTTTAAA
7370127 AAATGAT
66 AAATGAT
* * * *
7370134 AAACGTAGTTTTCTTGCTACCCTTTTCTTCTTT-AATTTTC-TTTAATTTTGCCCTAACTTT
1 AAACGTAGTTTTCTTGCTACCCTTTGCCTCTTTAAATTTCCTTTTAATTTTGCCCAAACTTT
7370194 TCTAAAAACA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 18 0.33
71 6 0.11
72 31 0.56
ACGTcount: A:0.23, C:0.21, G:0.08, T:0.48
Consensus pattern (72 bp):
AAACGTAGTTTTCTTGCTACCCTTTGCCTCTTTAAATTTCCTTTTAATTTTGCCCAAACTTTAAA
AAATGAT
Found at i:7377053 original size:33 final size:34
Alignment explanation
Indices: 7376993--7377065 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 34
7376983 AAACTATCAT
*
7376993 ATAATAATAGTATGATAAATAAAAATGATATA-G
1 ATAATAATAGTATGATAAATAAAAATGATAAATG
* * *
7377026 ATAATAATATTATGA-ATAATGATAATGATAAATG
1 ATAATAATAGTATGATA-AATAAAAATGATAAATG
7377060 ATAATA
1 ATAATA
7377066 CATTGAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 1 0.03
33 26 0.76
34 7 0.21
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (34 bp):
ATAATAATAGTATGATAAATAAAAATGATAAATG
Found at i:7378995 original size:87 final size:93
Alignment explanation
Indices: 7378901--7379158 Score: 246
Period size: 87 Copynumber: 2.8 Consensus size: 93
7378891 ATCTGACACG
*
7378901 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCTACTGAAA-TCTC
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGAAACT-TC
* *
7378965 AGGGGGATAGGA-TA-G-T-GTCT-T-TA
65 AGGGAGATAGGATTACGCTAATCTATGTA
*** * ** * *
7378988 ATCTACTCCGTTGTAA-TCTCAGGGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCTACTGTAACT-TCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGAAACTTC
*
7379052 AGGGAGATAGGATTATCGGCTTCAATCTGATGTG
65 AGGGAGATAGGATTA-C-GC-T-AATCT-ATGTA
* * *
7379086 ATCTACTCTACTGTAACTCCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT-ATAATTTC
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGA-AACTTC
7379150 AGGGAGATA
65 AGGGAGATA
7379159 AGATCCTTTA
Statistics
Matches: 135, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
86 1 0.01
87 62 0.46
88 3 0.02
91 1 0.01
93 1 0.01
95 3 0.02
97 1 0.01
98 62 0.46
99 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (93 bp):
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGAAACTTCA
GGGAGATAGGATTACGCTAATCTATGTA
Found at i:7379047 original size:44 final size:44
Alignment explanation
Indices: 7378901--7379469 Score: 207
Period size: 44 Copynumber: 12.8 Consensus size: 44
7378891 ATCTGACACG
* * * **
7378901 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTAAATTTTA
** * * * * ** *
7378945 ATCCACTCTACTGAAATCTCAGGGGGATAGGATAGT--GTCTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAAT-TTTA
* **
7378988 ATCTACTCCGTTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * *
7379032 ATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTATCGGCTTCAATCTGATGTG
1 ATCTGCTCCACTGTAATC-TCAGGGAGATA--A-GATC--C-TAAAT-T--T-TA
* * * **
7379086 ATCTACTCTACTGTAA-CTCCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATCT-CAGGGAGATAAGATCCTAAATTTTA
* * * **
7379130 ATCCGCTCCACTATAATTTCAGGGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * *
7379174 ATCTGCTCCACTGTAATTTCAGGGAGATAGGAT--TACTATCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTA-AAT-TTTA
** * *
7379218 ATCTGCTCTGCTGTAATCTTAGGGAGATAAGAT-CTGAATTTT-
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * * ***
7379260 TTCGGTCTACTACACTGTAACCTCAGGGAGATAAGA-CC-AGA-TGCG
1 ATCTG-CT-C--CACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * * *
7379305 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTAAATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * ** * **
7379349 ATCCGCTCCACTGTAA-CTTTAGGGAGATAGGATAGT--GTCTTGG
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTAAAT-TTTA
* * * *** *
7379392 ATCTACTCCGCTGTAATCTAAGGGAGATAAGATCTCT-GGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC-CTAAATTTTA
* *
7379436 ATCTGCTTCACTGTAACCTCAGGGAGATAAGATC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC
7379470 TGAAATTCTT
Statistics
Matches: 393, Mismatches: 98, Indels: 68
0.70 0.18 0.12
Matches are distributed among these distances:
41 22 0.06
42 7 0.02
43 71 0.18
44 218 0.55
45 9 0.02
46 22 0.06
47 4 0.01
48 3 0.01
49 2 0.01
50 4 0.01
51 4 0.01
52 1 0.00
53 2 0.01
54 24 0.06
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
Found at i:7379395 original size:87 final size:86
Alignment explanation
Indices: 7379143--7379426 Score: 247
Period size: 87 Copynumber: 3.3 Consensus size: 86
7379133 CGCTCCACTA
* * * *
7379143 TAATTTCAGGGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAA-TTTCAGGGAGATAGGAT
1 TAATCTCAGGGAGATAAGAT-CTTAATTTTAATCCGCTCCACTGTAACTTT-AGGGAGATAGGAC
* * * *
7379207 TACTATCTTCAATCTGCTCTGCTG
64 TAGTGTCTT-GATCTACTCTGCTG
* * * * * * *
7379231 TAATCTTAGGGAGATAAGATCTGAATTTT-TTCGGTCTACTACACTGTAACCTCAGGGAGATAAG
1 TAATCTCAGGGAGATAAGATCTTAATTTTAATCCG-CT-C--CACTGTAACTTTAGGGAGATAGG
* *
7379295 ACCAGATG-C--GATCTACTCTACTG
62 ACTAG-TGTCTTGATCTACTCTGCTG
* *
7379318 TAACCTCAGAGAGATAAGATCTTAAATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGA-T
1 TAATCTCAGGGAGATAAGATCTT-AATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGACT
*
7379382 AGTGTCTTGGATCTACTCCGCTG
65 AGTGTCTT-GATCTACTCTGCTG
*
7379405 TAATCTAAGGGAGATAAGATCT
1 TAATCTCAGGGAGATAAGATCT
7379427 CTGGCTTCAA
Statistics
Matches: 153, Mismatches: 31, Indels: 25
0.73 0.15 0.12
Matches are distributed among these distances:
83 2 0.01
84 3 0.02
85 21 0.14
86 3 0.02
87 71 0.46
88 27 0.18
89 3 0.02
90 21 0.14
91 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (86 bp):
TAATCTCAGGGAGATAAGATCTTAATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGACTA
GTGTCTTGATCTACTCTGCTG
Found at i:7382125 original size:12 final size:12
Alignment explanation
Indices: 7382108--7382132 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7382098 ATTGCCTCGA
7382108 GTCTATTCACCT
1 GTCTATTCACCT
7382120 GTCTATTCACCT
1 GTCTATTCACCT
7382132 G
1 G
7382133 AATCATCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.12, T:0.40
Consensus pattern (12 bp):
GTCTATTCACCT
Found at i:7396444 original size:27 final size:25
Alignment explanation
Indices: 7396413--7396473 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
7396403 TATTTATTTG
7396413 ATTAAATTATAGAATAAAAATTTAAAT
1 ATTAAATTA-AGAATAAAAA-TTAAAT
* *
7396440 ATTAAAATTAAGTATATAAATTAAAT
1 ATT-AAATTAAGAATAAAAATTAAAT
*
7396466 CTTAAATT
1 ATTAAATT
7396474 TGAACAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 5 0.17
26 8 0.27
27 11 0.37
28 6 0.20
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (25 bp):
ATTAAATTAAGAATAAAAATTAAAT
Found at i:7396470 original size:26 final size:28
Alignment explanation
Indices: 7396416--7396471 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
7396406 TTATTTGATT
7396416 AAATTATAGAATAAAAATTTAAATATTA
1 AAATTATAGAATAAAAATTTAAATATTA
* * *
7396444 AAATTA-AGTATATAAA-TTAAATCTTA
1 AAATTATAGAATAAAAATTTAAATATTA
7396470 AA
1 AA
7396472 TTTGAACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.44
27 8 0.32
28 6 0.24
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (28 bp):
AAATTATAGAATAAAAATTTAAATATTA
Found at i:7398039 original size:24 final size:25
Alignment explanation
Indices: 7397990--7398041 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
7397980 AAACTACTGT
*
7397990 AAATTAATTTTTTAAATTGATGGAA
1 AAATTAATTTTTTAAAATGATGGAA
7398015 AAATTAATTTTTTAATAAT-AT-GAA
1 AAATTAATTTTTTAA-AATGATGGAA
7398039 AAA
1 AAA
7398042 GAATAATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 6 0.24
25 17 0.68
26 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (25 bp):
AAATTAATTTTTTAAAATGATGGAA
Found at i:7399445 original size:100 final size:98
Alignment explanation
Indices: 7399242--7399471 Score: 424
Period size: 100 Copynumber: 2.3 Consensus size: 98
7399232 CTAAATGAAG
*
7399242 CATTAAATTTATAACACATTTGTTAGCAGTATCTGTCATTATATACATACATGGACTTATGTGAC
1 CATTAAATTTATAACACATTTGTTAGCAGTATCTGACATTATATACATACATGGACTTATGTGAC
*
7399307 TTATAGGACTTTAATGTTTTATTTACATACATA
66 TTATAGGACTTTAATGTTTTATATACATACATA
7399340 CATTAAATTTATAACACATTTGTTAGCAGTATCTGACATTATATACATACATGTGGACTTATGTG
1 CATTAAATTTATAACACATTTGTTAGCAGTATCTGACATTATATACATACA--TGGACTTATGTG
7399405 ACTTATAGGACTTTAATGTTTTATATACATACATA
64 ACTTATAGGACTTTAATGTTTTATATACATACATA
7399440 CATTAAATTTATAACACATTTGTTAGCAGTAT
1 CATTAAATTTATAACACATTTGTTAGCAGTAT
7399472 TTGTTAGACA
Statistics
Matches: 128, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
98 50 0.39
100 78 0.61
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (98 bp):
CATTAAATTTATAACACATTTGTTAGCAGTATCTGACATTATATACATACATGGACTTATGTGAC
TTATAGGACTTTAATGTTTTATATACATACATA
Found at i:7402097 original size:38 final size:38
Alignment explanation
Indices: 7402055--7402132 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
7402045 TATTTAATTA
* * *
7402055 ATTTTTTAAATTTAAAAAATCA-AAAAATTATAAAAAAT
1 ATTTTTAAAAATT-AAAAATCATAAAAATCATAAAAAAT
* *
7402093 ATTTTTAAAAATTAAAAATCATTAAAATCATTAAAAAT
1 ATTTTTAAAAATTAAAAATCATAAAAATCATAAAAAAT
7402131 AT
1 AT
7402133 AAAAAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
37 8 0.24
38 26 0.76
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (38 bp):
ATTTTTAAAAATTAAAAATCATAAAAATCATAAAAAAT
Found at i:7402144 original size:27 final size:26
Alignment explanation
Indices: 7402097--7402172 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
7402087 AAAAATATTT
*
7402097 TTAAAAATTAAAAATCATTAAAATCA
1 TTAAAAATTAAAAATAATTAAAATCA
* *
7402123 TTAAAAATATAAAAA-AATTTAATATTA
1 TTAAAAAT-TAAAAATAA-TTAAAATCA
**
7402150 TTAAATTTTAAAAAATAATTAAA
1 TTAAAAATT-AAAAATAATTAAA
7402173 TATTGATGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
26 10 0.25
27 28 0.70
28 2 0.05
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (26 bp):
TTAAAAATTAAAAATAATTAAAATCA
Found at i:7407766 original size:50 final size:50
Alignment explanation
Indices: 7407712--7408245 Score: 240
Period size: 50 Copynumber: 10.7 Consensus size: 50
7407702 TGCAATGTTG
* ** *
7407712 GGGAAACCAGATTCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCG-TCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCA-AGATCA
*** * * * *
7407762 GGGAAGTAAGATCCGTCGTCGTGGCTTCAATCTTTTAAATCGCAAGATCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAGATCA
* ** *
7407812 GGGAAACCAGATCCGCCGTCATAGCTTCAATC---TACTCCGC-TGTACTGCTA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAG-A-T-C-A
* *** * * * * *
7407862 AGGAAGTAAGATCTGCCGTTGTGGCTTCAATCCT-TTAAATCGCAATATCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAAT-CTGTTAAACCGCAAGATCA
* *
7407912 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCT---CCGC-TGTACTGCTA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAG-A-T-C-A
* *** * * * * *
7407962 AGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAGATCA
* *
7408012 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCT---CCGC-TGTACTGCTA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAG-A-T-C-A
* *** * * * * * *
7408062 AGGAAGTAAGATCCACCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAGATCA
* * * *
7408112 GGGAAACCAGATCCGCTGTCATAGCTTCAATCTGCT---CCGC-TGTACTGCTA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAG-A-T-C-A
* ** * * * * * *
7408162 AGGAAATAAGATCCGCCGTTGTGGCTTCAATATTTTAAATCGCAATATCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAGATCA
7408212 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTG
7408246 CTCCACTGTA
Statistics
Matches: 337, Mismatches: 113, Indels: 68
0.65 0.22 0.13
Matches are distributed among these distances:
46 1 0.00
47 18 0.05
48 4 0.01
49 7 0.02
50 280 0.83
51 5 0.01
52 4 0.01
53 18 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (50 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTAAACCGCAAGATCA
Found at i:7407822 original size:100 final size:100
Alignment explanation
Indices: 7407712--7408297 Score: 949
Period size: 100 Copynumber: 5.9 Consensus size: 100
7407702 TGCAATGTTG
* * * * * * *
7407712 GGGAAACCAGATTCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCG-TCAGGGAAGTAAGATCC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCT-AAGGAAGTAAGATCC
* * *
7407776 GTCGTCGTGGCTTCAATCTTTTAAATCGCAAGATCA
65 GCCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
* * *
7407812 GGGAAACCAGATCCGCCGTCATAGCTTCAATCTACTCCGCTGTACTGCTAAGGAAGTAAGATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
*
7407877 CCGTTGTGGCTTCAATCCTTTAAATCGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
7407912 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
7407977 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
*
7408012 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
7408077 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
* * *
7408112 GGGAAACCAGATCCGCTGTCATAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAATAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
*
7408177 CCGTTGTGGCTTCAATATTTTAAATCGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
* * *
7408212 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCACTGTACTACTAAGGAAGTAAGATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
*
7408277 CCGTTGTGGCTTCAACCTTTT
66 CCGTTGTGGCTTCAATCTTTT
7408298 TACTTTTCAA
Statistics
Matches: 453, Mismatches: 32, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
100 452 1.00
101 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGCTCCGCTGTACTGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTAAATCGCAATATCA
Found at i:7414312 original size:23 final size:23
Alignment explanation
Indices: 7414286--7414385 Score: 121
Period size: 23 Copynumber: 4.3 Consensus size: 23
7414276 ATAAGTGTCA
*
7414286 CACTGATGTGTAGCCAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
* *
7414309 CACTGATATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
* **
7414332 CACTG-TAATGTACCCGTAGCTAC
1 CACTGAT-ATGTAGCCAAAGCTAC
*
7414355 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCAAAGCTAC
7414378 CACTGATA
1 CACTGATA
7414386 AATAACACTA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.02
23 63 0.98
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCAAAGCTAC
Done.