Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70731513
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1900000 characters in sequence are not A, C, G, or T
File 25 of 222
Found at i:7696902 original size:20 final size:20
Alignment explanation
Indices: 7696879--7696917 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7696869 GCCCATGGAG
*
7696879 TTCTTCTGTAACTAATGAAC
1 TTCTACTGTAACTAATGAAC
* *
7696899 TTCTACTTTCACTAATGAA
1 TTCTACTGTAACTAATGAA
7696918 ATAAAGGCTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (20 bp):
TTCTACTGTAACTAATGAAC
Found at i:7698466 original size:227 final size:227
Alignment explanation
Indices: 7698071--7698527 Score: 905
Period size: 227 Copynumber: 2.0 Consensus size: 227
7698061 GAATTAAGCT
*
7698071 TTTGGAAACTGTTCTTTGGAAACCGTTCTGTATCATCTGTTTGTATGCGTACTGCGGTTGGATAG
1 TTTGGAAACTGTTCTTTGGAAACCGTTCTGTATCATATGTTTGTATGCGTACTGCGGTTGGATAG
7698136 TTTGCAAGCTGTTATTTTCGAGTTTTTTTCTTTTTCGCCTAAGAATTCTGTATTGCTGGATGGTA
66 TTTGCAAGCTGTTATTTTCGAGTTTTTTTCTTTTTCGCCTAAGAATTCTGTATTGCTGGATGGTA
7698201 TGTTGCTGTATGTCTTCAGATATTTTTAATGAATTGAACTCTGGATATTTGATCAAATGGAGAAC
131 TGTTGCTGTATGTCTTCAGATATTTTTAATGAATTGAACTCTGGATATTTGATCAAATGGAGAAC
7698266 TTGACTGTGCATGTGCTGGATGAGCATGAAAG
196 TTGACTGTGCATGTGCTGGATGAGCATGAAAG
7698298 TTTGGAAACTGTTCTTTGGAAACCGTTCTGTATCATATGTTTGTATGCGTACTGCGGTTGGATAG
1 TTTGGAAACTGTTCTTTGGAAACCGTTCTGTATCATATGTTTGTATGCGTACTGCGGTTGGATAG
7698363 TTTGCAAGCTGTTATTTTCGAGTTTTTTTCTTTTTCGCCTAAGAATTCTGTATTGCTGGATGGTA
66 TTTGCAAGCTGTTATTTTCGAGTTTTTTTCTTTTTCGCCTAAGAATTCTGTATTGCTGGATGGTA
7698428 TGTTGCTGTATGTCTTCAGATATTTTTAATGAATTGAACTCTGGATATTTGATCAAATGGAGAAC
131 TGTTGCTGTATGTCTTCAGATATTTTTAATGAATTGAACTCTGGATATTTGATCAAATGGAGAAC
7698493 TTGACTGTGCATGTGCTGGATGAGCATGAAAG
196 TTGACTGTGCATGTGCTGGATGAGCATGAAAG
7698525 TTT
1 TTT
7698528 AAAGGTGAAT
Statistics
Matches: 229, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
227 229 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.41
Consensus pattern (227 bp):
TTTGGAAACTGTTCTTTGGAAACCGTTCTGTATCATATGTTTGTATGCGTACTGCGGTTGGATAG
TTTGCAAGCTGTTATTTTCGAGTTTTTTTCTTTTTCGCCTAAGAATTCTGTATTGCTGGATGGTA
TGTTGCTGTATGTCTTCAGATATTTTTAATGAATTGAACTCTGGATATTTGATCAAATGGAGAAC
TTGACTGTGCATGTGCTGGATGAGCATGAAAG
Found at i:7706426 original size:31 final size:33
Alignment explanation
Indices: 7706352--7706431 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 33
7706342 AAAATTTTTA
* * *
7706352 AAAATTTTCAAAAATATCTTAAATAAGTTTAATT
1 AAAATTTTCAAAAATA-CTTAAATAACTATAATG
7706386 AAAATTTTCAAAAATA-TTAAA-AACTATAATG
1 AAAATTTTCAAAAATACTTAAATAACTATAATG
*
7706417 AGAATTTTCAAAAAT
1 AAAATTTTCAAAAAT
7706432 TTAGAGTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 21 0.50
32 5 0.12
34 16 0.38
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (33 bp):
AAAATTTTCAAAAATACTTAAATAACTATAATG
Found at i:7714013 original size:63 final size:62
Alignment explanation
Indices: 7713825--7714016 Score: 294
Period size: 63 Copynumber: 3.0 Consensus size: 62
7713815 TCACACGAAG
* * * *
7713825 ATATTCTTATCACATCCGGAATGAAGCGCATCTTAATAGAGTTTGAATTATCAAATGTAAGTC
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTA-CAAATTTAAGTT
*
7713888 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGGGTTTGAATTACCAAATTTAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTA-CAAATTTAAGTT
* *
7713951 ATATTCTTATCACATCAGGAATGGGGCACATCTTAATAGAGTTTGAATTACGAAATTTAAGTT
1 ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTAC-AAATTTAAGTT
7714014 ATA
1 ATA
7714017 AATCAGGTTG
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
62 1 0.01
63 118 0.99
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (62 bp):
ATATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTACAAATTTAAGTT
Found at i:7717266 original size:17 final size:17
Alignment explanation
Indices: 7717220--7717268 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 17
7717210 TTTTTCCATT
* *
7717220 TATTTTTTTTATTGTTC
1 TATTTTATTTATTATTC
7717237 TAATATTTGATTTATTATTC
1 T-AT-TTT-ATTTATTATTC
7717257 TATTTTATTTAT
1 TATTTTATTTAT
7717269 CTTAGTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 7 0.26
18 5 0.19
19 5 0.19
20 10 0.37
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (17 bp):
TATTTTATTTATTATTC
Found at i:7719224 original size:21 final size:21
Alignment explanation
Indices: 7719200--7719296 Score: 56
Period size: 23 Copynumber: 4.4 Consensus size: 21
7719190 AGATAGTAAA
*
7719200 AAAATAATAT-ATGATAAATTT
1 AAAATAATATAATAAT-AATTT
*
7719221 AAAA-CATATCAATAATAATTT
1 AAAATAATAT-AATAATAATTT
*
7719242 AAAATAATAGT-ATATTACATTTT
1 AAAATAATA-TAATAATA-A-TTT
* *
7719265 AAAATTATACTAATAACAAGTTT
1 AAAATAATA-TAATAATAA-TTT
7719288 AAAAGTAAT
1 AAAA-TAAT
7719297 GTCAAACTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
20 4 0.07
21 18 0.31
22 8 0.14
23 21 0.36
24 7 0.12
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (21 bp):
AAAATAATATAATAATAATTT
Found at i:7719423 original size:3 final size:3
Alignment explanation
Indices: 7719417--7719453 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7719407 ATAAAGAAGA
*
7719417 AAT AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7719454 GGATTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7719497 original size:5 final size:6
Alignment explanation
Indices: 7719478--7719538 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
7719468 ATTGGAATTC
* * *
7719478 AAATAA AAATAA AAATAA AACACTAC AAATAG AAATAA AAA-AA GAA-AA
1 AAATAA AAATAA AAATAA AA-A-TAA AAATAA AAATAA AAATAA AAATAA
*
7719526 AAATAA AGATAA A
1 AAATAA AAATAA A
7719539 CTAAATTGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
5 8 0.17
6 32 0.70
7 2 0.04
8 4 0.09
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:7727005 original size:9 final size:9
Alignment explanation
Indices: 7726974--7727030 Score: 62
Period size: 10 Copynumber: 6.1 Consensus size: 9
7726964 GAATAACCCT
7726974 TAAATAATTA
1 TAAA-AATTA
7726984 TAAAAA-TA
1 TAAAAATTA
*
7726992 AAAAAATTA
1 TAAAAATTA
7727001 TAAAAATTA
1 TAAAAATTA
*
7727010 TATAAGATTA
1 TA-AAAATTA
7727020 TAATAAATTA
1 TAA-AAATTA
7727030 T
1 T
7727031 TACAAGTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 7 0.17
9 15 0.38
10 18 0.45
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:7727005 original size:10 final size:10
Alignment explanation
Indices: 7726974--7727030 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 10
7726964 GAATAACCCT
*
7726974 TAAATAATTA
1 TAAAAAATTA
7726984 T-AAAAA-TA
1 TAAAAAATTA
7726992 -AAAAAATTA
1 TAAAAAATTA
7727001 T-AAAAATTA
1 TAAAAAATTA
* *
7727010 TATAAGATTA
1 TAAAAAATTA
*
7727020 TAATAAATTA
1 TAAAAAATTA
7727030 T
1 T
7727031 TACAAGTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
8 7 0.19
9 15 0.41
10 15 0.41
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:7727040 original size:20 final size:19
Alignment explanation
Indices: 7726980--7727048 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
7726970 CCCTTAAATA
* *
7726980 ATTATAAAAA-TA-AAAAA
1 ATTATAAAAATTATACAAG
*
7726997 ATTATAAAAATTATATAAG
1 ATTATAAAAATTATACAAG
7727016 ATTATAATAAATTATTACAAG
1 ATTATAA-AAATTA-TACAAG
7727037 -TTATAAATAATT
1 ATTATAAA-AATT
7727049 GTCATCTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 10 0.23
18 2 0.05
19 11 0.25
20 16 0.36
21 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (19 bp):
ATTATAAAAATTATACAAG
Found at i:7727358 original size:10 final size:10
Alignment explanation
Indices: 7727343--7727386 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
7727333 CCATTTTGTT
7727343 TTATAAAAAA
1 TTATAAAAAA
7727353 TTAT-AAAAA
1 TTATAAAAAA
*
7727362 TTATAGAAAA
1 TTATAAAAAA
*
7727372 -TATGAAAAA
1 TTATAAAAAA
7727381 TTATAA
1 TTATAA
7727387 TTTTTGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 16 0.57
10 12 0.43
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:7727371 original size:19 final size:19
Alignment explanation
Indices: 7727343--7727386 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
7727333 CCATTTTGTT
7727343 TTATAAAAAATTAT-AAAAA
1 TTATAAAAAA-TATGAAAAA
*
7727362 TTATAGAAAATATGAAAAA
1 TTATAAAAAATATGAAAAA
7727381 TTATAA
1 TTATAA
7727387 TTTTTGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
TTATAAAAAATATGAAAAA
Found at i:7728025 original size:48 final size:45
Alignment explanation
Indices: 7727962--7728073 Score: 116
Period size: 48 Copynumber: 2.4 Consensus size: 45
7727952 ATTAAATATC
* *
7727962 AAACCTTTTTACTTTTTCCCAAAAATTTTACCTTCCCCAATACCTCCA
1 AAACTTTTTTCCTTTTTCCCAAAAATTTTA-CTTCCCCAA-A-CTCCA
* * *
7728010 AAACTTTTTTCCTTTTACTTCCCAAAATTTTTACTTCCCCAAATTCCC
1 AAACTTTTTTCC-TTT--TTCCCAAAAATTTTACTTCCCCAAACTCCA
*
7728058 AAACTTTTCTCCTTTT
1 AAACTTTTTTCCTTTT
7728074 GCTTCCCCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
45 1 0.02
47 3 0.05
48 24 0.44
49 4 0.07
50 9 0.16
51 14 0.25
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (45 bp):
AAACTTTTTTCCTTTTTCCCAAAAATTTTACTTCCCCAAACTCCA
Found at i:7728043 original size:16 final size:16
Alignment explanation
Indices: 7728022--7728054 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7728012 ACTTTTTTCC
7728022 TTTTACTTCCCAAAAT
1 TTTTACTTCCCAAAAT
*
7728038 TTTTACTTCCCCAAAT
1 TTTTACTTCCCAAAAT
7728054 T
1 T
7728055 CCCAAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTTACTTCCCAAAAT
Found at i:7728079 original size:48 final size:50
Alignment explanation
Indices: 7727977--7728095 Score: 152
Period size: 48 Copynumber: 2.4 Consensus size: 50
7727967 TTTTTACTTT
*
7727977 TTCCCAAAAATTTTACCTTCCCCAATACCTCCAAAACTTTTTTCCTTTTAC
1 TTCCCAAAAATTTTA-CTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
* * * *
7728028 TTCCCAAAATTTTTACTTCCCCAA-A-TTCCCAAACTTTTCTCCTTTTGC
1 TTCCCAAAAATTTTACTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
* *
7728076 TTCCCCAAACTTTTACTTCC
1 TTCCCAAAAATTTTACTTCC
7728096 TCCTAAACCC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 37 0.61
49 1 0.02
50 9 0.15
51 14 0.23
ACGTcount: A:0.24, C:0.34, G:0.01, T:0.40
Consensus pattern (50 bp):
TTCCCAAAAATTTTACTTCCCCAATACCTCCAAAACTTTTCTCCTTTTAC
Found at i:7728327 original size:19 final size:20
Alignment explanation
Indices: 7728283--7728327 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
7728273 GGTATCAATT
*
7728283 TCACA-TTTTATTTTTAAAA
1 TCACATTTTTATTTTAAAAA
*
7728302 T-AAATTTTTA-TTTAAAAA
1 TCACATTTTTATTTTAAAAA
7728320 TCACATTT
1 TCACATTT
7728328 GTTACATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (20 bp):
TCACATTTTTATTTTAAAAA
Found at i:7729247 original size:14 final size:14
Alignment explanation
Indices: 7729228--7729255 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7729218 AACATTCACG
7729228 GTCCAAGCCCGACC
1 GTCCAAGCCCGACC
7729242 GTCCAAGCCCGACC
1 GTCCAAGCCCGACC
7729256 CGACCCGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.50, G:0.21, T:0.07
Consensus pattern (14 bp):
GTCCAAGCCCGACC
Found at i:7729315 original size:16 final size:18
Alignment explanation
Indices: 7729276--7729309 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7729266 TAAGTTTATA
7729276 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7729293 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7729310 AATTTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7730373 original size:3 final size:3
Alignment explanation
Indices: 7730324--7730358 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7730314 CTAATTAGTT
* *
7730324 TTA TTA TTA TTA TTA TTA TTA TTG TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7730359 GTATTTACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7730560 original size:12 final size:12
Alignment explanation
Indices: 7730545--7730585 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
7730535 TACTTACATA
7730545 TATATATATATT
1 TATATATATATT
7730557 TATATATATATT
1 TATATATATATT
7730569 TA-ATA-AT-TT
1 TATATATATATT
7730578 TATA-ATAT
1 TATATATAT
7730586 GTATATAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 5 0.19
10 5 0.19
11 3 0.11
12 14 0.52
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATATATATATT
Found at i:7735088 original size:16 final size:15
Alignment explanation
Indices: 7735087--7735134 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
7735077 GAAGGAAGAA
* *
7735087 AAGAAAAAGAAAAGA
1 AAGAAAAAAAAAAGG
7735102 AAGAAAAGAAAAAAGG
1 AAGAAAA-AAAAAAGG
7735118 AAGAAAAAGAAAAAGG
1 AAGAAAAA-AAAAAGG
7735134 A
1 A
7735135 GAGGCCAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAAAAGG
Found at i:7735121 original size:20 final size:20
Alignment explanation
Indices: 7735070--7735123 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
7735060 AGAATGTTCA
* *
7735070 AAAAAAAGAAGGAAGAAAAG
1 AAAAAAGGAAGAAAGAAAAG
*
7735090 -AAAAAGAAAAGAAAGAAAAG
1 AAAAAAG-GAAGAAAGAAAAG
7735110 AAAAAAGGAAGAAA
1 AAAAAAGGAAGAAA
7735124 AAGAAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.18
20 17 0.61
21 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AAAAAAGGAAGAAAGAAAAG
Found at i:7736042 original size:24 final size:24
Alignment explanation
Indices: 7736015--7736065 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
7736005 AAAATTATCG
*
7736015 TGGATTTAACCTTT-AAGATTACAA
1 TGGATTGAA-CTTTGAAGATTACAA
7736039 TGGATTGAACTTTGAAGATTACAA
1 TGGATTGAACTTTGAAGATTACAA
7736063 TGG
1 TGG
7736066 GGGCAATCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (24 bp):
TGGATTGAACTTTGAAGATTACAA
Found at i:7736448 original size:50 final size:50
Alignment explanation
Indices: 7736394--7736650 Score: 163
Period size: 50 Copynumber: 5.1 Consensus size: 50
7736384 GTGAATTTTG
* * *
7736394 CTTCCCCGGTATTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTA
1 CTTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
* * * * ** * * * * * *
7736444 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCAAATATTG
1 CTTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
* * * *
7736494 CTTCCCCGACATTTCAATTTAAAAGATTGAAGCCACAACGGCAAATCTTA
1 CTTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
* ** * * ** * * * *** *
7736544 CTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTG
1 C-TTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
* * * * *
7736595 CTTCCTCGACATTGTAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTA
1 CTTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
7736645 CTTCCC
1 CTTCCC
7736651 TGGCGGTGTA
Statistics
Matches: 139, Mismatches: 67, Indels: 2
0.67 0.32 0.01
Matches are distributed among these distances:
50 107 0.77
51 32 0.23
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (50 bp):
CTTCCCCGGCATTGCAATTGAAAAGATTGAAGCCACAACGGCGAATCTTA
Found at i:7736685 original size:201 final size:201
Alignment explanation
Indices: 7736340--7736707 Score: 556
Period size: 201 Copynumber: 1.8 Consensus size: 201
7736330 ATCAATGAAG
* * ** * **
7736340 TTACTTTCCCTGGTGGTGCAGTGGAGCAGATTAAAGCTATGACGGTGAATTTTGCTTCCCCGGTA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTGCTTCCCCGACA
* *
7736405 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGCAGTGGAGCAGA
66 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGCAGTGAAACAGA
7736470 TTAAAGCTACGACGGCAAATATTGCTTCCCCGACATTTCAATTTAAAAGATTGAAGCCACAACGG
131 TTAAAGCTACGACGGCAAATATTGCTTCCCCGACATTTCAATTTAAAAGATTGAAGCCACAACGG
7736535 CAAATC
196 CAAATC
*
7736541 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTGCTTCCTCGACA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTGCTTCCCCGACA
* * * * * *
7736606 TTGTAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGAAACAGA
66 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGCAGTGAAACAGA
* * * *
7736671 TTAAAGCTACGACGGCGAATCTTGTTTCCCTGACATT
131 TTAAAGCTACGACGGCAAATATTGCTTCCCCGACATT
7736708 GCAGTTAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
201 147 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (201 bp):
TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTGCTTCCCCGACA
TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGCAGTGAAACAGA
TTAAAGCTACGACGGCAAATATTGCTTCCCCGACATTTCAATTTAAAAGATTGAAGCCACAACGG
CAAATC
Found at i:7736708 original size:100 final size:101
Alignment explanation
Indices: 7736340--7736708 Score: 483
Period size: 100 Copynumber: 3.7 Consensus size: 101
7736330 ATCAATGAAG
* * * * **
7736340 TTACTTTCCCTGGTGGTGCAGTGGAGCAGATTAAAGCTATGACGGTGAATTTTGCTTCCCCGGTA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACA
* * *
7736405 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATC
66 TTGTAATTTAAAAGATTGAAGCCACAACGGCGAATC
* * *
7736441 TTAC-TTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCAAATATTGCTTCCCCGACA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACA
*
7736505 TT-TCAATTTAAAAGATTGAAGCCACAACGGCAAATC
66 TTGT-AATTTAAAAGATTGAAGCCACAACGGCGAATC
** *** *
7736541 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTATAACAATGAATCTTGCTTCCTCGACA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACA
*
7736606 TTGTAATTTAAAAGATTGAAGCCGCAACGGCGAATC
66 TTGTAATTTAAAAGATTGAAGCCACAACGGCGAATC
* * * * *
7736642 TTAC-TTCCCTGGCGGTGTAGTGAAACAGATTAAAGCTACGACGGCGAATCTTGTTTCCCTGACA
1 TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACA
7736706 TTG
66 TTG
7736709 CAGTTAATAG
Statistics
Matches: 231, Mismatches: 34, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
100 139 0.60
101 91 0.39
102 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (101 bp):
TTACTTTCCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACA
TTGTAATTTAAAAGATTGAAGCCACAACGGCGAATC
Found at i:7736866 original size:41 final size:41
Alignment explanation
Indices: 7736780--7737110 Score: 299
Period size: 41 Copynumber: 7.8 Consensus size: 41
7736770 ACCATAAATT
* * *
7736780 TTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAATCAAGATC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAAATCCAG-TC
*
7736823 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCCAGTC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAATCCAGTC
* * * * *
7736864 TTATCTCCCTGAAGTTGCAGTGGAACAGA-CAAAAGAAACCAATC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGATC---A-AATCCAGTC
* * * * *
7736908 TTATCTC-CTTAAAGTTGCAGTAGAGCGGATTAAAAACAAGATC
1 TTATCTCTC-TGAAGTTGCAGTAGAGCAGA-TCAAATCCAG-TC
* *
7736951 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAATC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAATCCAGTC
* * * * * *
7736992 TTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATA
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAAATC-C-AG-TC
*
7737037 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGTC
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAATCCAGTC
* *
7737078 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAA
1 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAA
7737111 AGGAACTAAT
Statistics
Matches: 233, Mismatches: 42, Indels: 29
0.77 0.14 0.10
Matches are distributed among these distances:
40 4 0.02
41 84 0.36
42 23 0.10
43 60 0.26
44 35 0.15
45 27 0.12
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (41 bp):
TTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAATCCAGTC
Found at i:7736923 original size:128 final size:129
Alignment explanation
Indices: 7736732--7737106 Score: 447
Period size: 128 Copynumber: 2.9 Consensus size: 129
7736722 AAAAGAAACT
* * * * ** * * *
7736732 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAA-ATTTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAAAAACAAGATATTATCTCTCTAAAGTT
* *
7736796 GCAGTGGAGCAGATTAAAATCAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
66 GCAGTAGAGCAGATTAAAATCAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
* * *
7736860 AGTCTTATCTCCCTGAAGTTGCAGTGGAACAGA-CAAAAGAAACCA-ATCTTATCTC-CTTAAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAA-AAACAAGATATTATCTCTC-TAAAG
* *
7736922 TTGCAGTAGAGCGGATTAAAAACAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC
64 TTGCAGTAGAGCAGATTAAAATCAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC
7736987 C
129 C
* * * ** *
7736988 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATATTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAAAAACAAGATATTATCTCTCTAAAGTT
* * * * *
7737053 GCAGTAGAGCAGA-TCACATCCAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
66 GCAGTAGAGCAGATTAAAATCAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
7737107 CAAAAGGAAC
Statistics
Matches: 211, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
127 34 0.16
128 145 0.69
129 31 0.15
130 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (129 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATCAAAAAAACAAGATATTATCTCTCTAAAGTT
GCAGTAGAGCAGATTAAAATCAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
Found at i:7737966 original size:14 final size:14
Alignment explanation
Indices: 7737947--7737987 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
7737937 CGGTTCATTC
7737947 ATTTATTTTATTTT
1 ATTTATTTTATTTT
7737961 ATTTA-TTTATATTT
1 ATTTATTTTAT-TTT
*
7737975 ATTT-TTTTCTTTT
1 ATTTATTTTATTTT
7737988 TTACAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (14 bp):
ATTTATTTTATTTT
Found at i:7738984 original size:14 final size:14
Alignment explanation
Indices: 7738945--7738987 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
7738935 AATTTTGTAA
*
7738945 ATATATATATACTT
1 ATATATATATATTT
*
7738959 ACATATATATATTT
1 ATATATATATATTT
7738973 ATATATATATATTT
1 ATATATATATATTT
7738987 A
1 A
7738988 ATAATTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATATATATATTT
Found at i:7739044 original size:39 final size:40
Alignment explanation
Indices: 7739000--7739079 Score: 101
Period size: 39 Copynumber: 2.0 Consensus size: 40
7738990 AATTTTATTA
*
7739000 TATGTATATAGACATACATAT-TTC-ACATTTTCATAACTT
1 TATGTATATACACATACATATCTTCTACATTTTCAT-ACTT
* * *
7739039 TATGTATATACACGTATATATCTTCTACATTTTTATACTT
1 TATGTATATACACATACATATCTTCTACATTTTCATACTT
7739079 T
1 T
7739080 TATTCATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 18 0.51
40 8 0.23
41 9 0.26
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.47
Consensus pattern (40 bp):
TATGTATATACACATACATATCTTCTACATTTTCATACTT
Found at i:7742399 original size:9 final size:9
Alignment explanation
Indices: 7742375--7742443 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
7742365 TTTTAGATTC
*
7742375 TTTTTTATA
1 TTTTTTAAA
* *
7742384 TTCTTTAGA
1 TTTTTTAAA
7742393 TTTTTTAAA
1 TTTTTTAAA
7742402 TTTTTGT-AA
1 TTTTT-TAAA
*
7742411 TATTTTAAAA
1 T-TTTTTAAA
7742421 TTTTTATAAA
1 TTTTT-TAAA
* *
7742431 TATTTTGAA
1 TTTTTTAAA
7742440 TTTT
1 TTTT
7742444 AAAATTTATT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
9 32 0.68
10 15 0.32
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:7742441 original size:19 final size:19
Alignment explanation
Indices: 7742395--7742443 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
7742385 TCTTTAGATT
*
7742395 TTTTAAATTTTTGT-AATA
1 TTTTAAATTTTTATAAATA
7742413 TTTTAAAATTTTTATAAATA
1 TTTT-AAATTTTTATAAATA
*
7742433 TTTTGAATTTT
1 TTTTAAATTTT
7742444 AAAATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 4 0.15
19 15 0.56
20 8 0.30
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TTTTAAATTTTTATAAATA
Found at i:7746023 original size:21 final size:21
Alignment explanation
Indices: 7745981--7746023 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7745971 GTTATATAAG
* *
7745981 AATTAATTTAAACATATAAAT
1 AATTAATTCAAACATAAAAAT
7746002 AATTAATTCAAA-ATAAACAAT
1 AATTAATTCAAACATAAA-AAT
7746023 A
1 A
7746024 TTCCAACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AATTAATTCAAACATAAAAAT
Found at i:7747338 original size:73 final size:72
Alignment explanation
Indices: 7747190--7747328 Score: 179
Period size: 73 Copynumber: 1.9 Consensus size: 72
7747180 AAAATAAGCA
* * * *
7747190 TTAGCGGCGTTTTCCAGAAAGCGCCGCAAAATACCTAAGCCCAACGACACCGTTTTCCGAGCTTT
1 TTAGCGGCATTTTCCAGAAAGCGCCACAAAAAACCTAAGCCCAACGACACCGCTTTCCGAGCTTT
7747255 CAGAAAT
66 CAGAAAT
** * * * *
7747262 TTAGCGGCATTTTTGAGAACGCGCCACAAAAAAACCTAAGCCCAACGACGCTGCTTTCTGAGCTT
1 TTAGCGGCATTTTCCAGAAAGCGCCAC-AAAAAACCTAAGCCCAACGACACCGCTTTCCGAGCTT
7747327 TC
65 TC
7747329 GGGGATTTAG
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
72 22 0.39
73 34 0.61
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (72 bp):
TTAGCGGCATTTTCCAGAAAGCGCCACAAAAAACCTAAGCCCAACGACACCGCTTTCCGAGCTTT
CAGAAAT
Found at i:7747413 original size:114 final size:114
Alignment explanation
Indices: 7747260--7748050 Score: 885
Period size: 114 Copynumber: 6.9 Consensus size: 114
7747250 GCTTTCAGAA
* * * * *
7747260 ATTTAGCGGCATTTTTGAGAACGCGCCACAAAAAAACCTAAGCCCAACGACGCTGCTTTCTGAGC
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * *
7747325 TTTCGGGGATTTAGTGACGGTTTTAGGTAAGCGCCGCTAATGCTCAGGG
66 TTTCGGGGATTTAGCGACGGTTTTAAGAAAGCGCCGCTAATGCTCAGGG
* * * * *
7747374 CTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAATGACGCCGTTTTCTAAGC
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * * * *
7747439 TTTCGGGGATTTAGTGGA-GTTTTTAAGTAATCGCCGCTAATGCTTAGGG
66 TTTCGGGGATTTAG-CGACGGTTTTAAGAAAGCGCCGCTAATGCTCAGGG
* *** * * * * *
7747488 CTTTAGCGGCGTTTACCAGAAAGCGCTGC-AAAAAACCTAAGCCCAACGACGTCGTTTACCGAGA
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* ** *
7747552 TTTTGGGGATTTAGC-A-GCGTTTTCGGGAAAGCGCCGCTAGTGCTCAGGG
66 TTTCGGGGATTTAGCGACG-GTTTT-AAGAAAGCGCCGCTAATGCTCAGGG
* * * * *
7747601 ATTTCGCGGCGCTTTTGAGAAAGCACCGCAAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGC
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * * *
7747666 TTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
66 TTTCGGGGATTTAGCGACGGTTTTAAGAAAGCGCCGCTAATGCTCAGGG
* * * * *
7747715 ATTTAGCGACGTTTCTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTACCGAGC
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* ** * *
7747780 TTTCGGGGATTTAGCGGC-GTTTTCGGGAAAGCTCCGCTAATGCTTAGGG
66 TTTCGGGGATTTAGCGACGGTTTT-AAGAAAGCGCCGCTAATGCTCAGGG
* * * * *
7747829 ATTTCGCGGCGCTTTTGAGAAAGCGCCGCAAAAAAAACCTTAGCCCAACGATGCCATTTTCTGAG
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
* * * *
7747894 CTTTCGGGGATTTTGCGGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
65 CTTTCGGGGATTTAGCGACGGTTTTAAGAAAGCGCCGCTAATGCTCAGGG
**
7747944 ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
1 ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * * *
7748009 TTTTCCGGGATTTAGTGGC-GTTTCTAA-AAAACGCCGCTAATG
66 -TTTCGGGGATTTAGCGACGGTTT-TAAGAAAGCGCCGCTAATG
7748051 AACCTAAGCC
Statistics
Matches: 561, Mismatches: 105, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
111 2 0.00
112 4 0.01
113 85 0.15
114 349 0.62
115 116 0.21
116 5 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (114 bp):
ATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
TTTCGGGGATTTAGCGACGGTTTTAAGAAAGCGCCGCTAATGCTCAGGG
Found at i:7747690 original size:227 final size:228
Alignment explanation
Indices: 7747260--7748023 Score: 1034
Period size: 227 Copynumber: 3.3 Consensus size: 228
7747250 GCTTTCAGAA
* ** * * * *
7747260 ATTTAGCGGCATTTTTGAGAACGCGCCACAAAAAAACCTAAGCCCAACGACGCTGCTTT-CTGAG
1 ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCG-TTTACCGAG
* * * * * *
7747324 CTTTCGGGGATTTAG-TGACGGTTTT-AGGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTT
65 CTTTCGGGGATTTAGCAG-C-GTTTTCGGGAAAGCGCCGCTAATGCTCAGGGATTTCGCGGCGCT
* * * * * *
7747387 TTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAATGACGCCGTTTTCTAAGCTTTCGGGGATTTA
128 TTTGAGAAAGCGCCGCAAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTA
* * * * * *
7747452 GTGGAGTTTTTAAGTAATCGCCGCTAATGCTTAGGG
193 GCGGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
* * * *
7747488 CTTTAGCGGCGTTTAC-CAGAAAGCGCTGC-AAAAAACCTAAGCCCAACGACGTCGTTTACCGAG
1 ATTTAGCGGCGTTT-CGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTACCGAG
* * *
7747551 ATTTTGGGGATTTAGCAGCGTTTTCGGGAAAGCGCCGCTAGTGCTCAGGGATTTCGCGGCGCTTT
65 CTTTCGGGGATTTAGCAGCGTTTTCGGGAAAGCGCCGCTAATGCTCAGGGATTTCGCGGCGCTTT
* *
7747616 TGAGAAAGCACCGCAAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGCTTTCAGGGATTTAGC
130 TGAGAAAGCGCCGCAAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGC
7747681 GGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
195 GGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
* * *
7747715 ATTTAGCGACGTTTCTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTACCGAGC
1 ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTACCGAGC
* * *
7747780 TTTCGGGGATTTAGCGGCGTTTTCGGGAAAGCTCCGCTAATGCTTAGGGATTTCGCGGCGCTTTT
66 TTTCGGGGATTTAGCAGCGTTTTCGGGAAAGCGCCGCTAATGCTCAGGGATTTCGCGGCGCTTTT
* *
7747845 GAGAAAGCGCCGCAAAAAAAACCTTAGCCCAACGATGCCATTTTCTGAGCTTTCGGGGATTTTGC
131 GAGAAAGCGCCGC-AAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGC
7747910 GGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
195 GGCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
* *
7747944 ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
1 ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTACCGAGC
*
7748009 TTTTCCGGGATTTAG
66 -TTTCGGGGATTTAG
7748024 TGGCGTTTCT
Statistics
Matches: 473, Mismatches: 55, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
226 9 0.02
227 183 0.39
228 126 0.27
229 142 0.30
230 13 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (228 bp):
ATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTACCGAGC
TTTCGGGGATTTAGCAGCGTTTTCGGGAAAGCGCCGCTAATGCTCAGGGATTTCGCGGCGCTTTT
GAGAAAGCGCCGCAAAAAAACCTTAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGCG
GCGTTTTTAAGAAAGCGCCGCAAATGCTCAGGG
Found at i:7747713 original size:41 final size:41
Alignment explanation
Indices: 7747668--7747746 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
7747658 TTCTGAGCTT
* *
7747668 TCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCAAATGC
1 TCAGGGATTTAGCGACGTTTCTAAGAAAGCGCCGCAAATGC
*
7747709 TCAGGGATTTAGCGACGTTTCTGAGAAAGCGCCGCAAA
1 TCAGGGATTTAGCGACGTTTCTAAGAAAGCGCCGCAAA
7747747 AAAACATAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
TCAGGGATTTAGCGACGTTTCTAAGAAAGCGCCGCAAATGC
Found at i:7748061 original size:73 final size:73
Alignment explanation
Indices: 7747941--7748103 Score: 220
Period size: 73 Copynumber: 2.2 Consensus size: 73
7747931 CAAATGCTCA
* *
7747941 GGGATTTAGCGGCGTTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
1 GGGATTTAGCGGCGTTTCGGAAAAAACGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
7748006 AGCTTTTCC
66 AGC-TTTCC
* * * ** * *
7748015 GGGATTTAGTGGCGTTTC-TAAAAAACGCCGCTAATGAACCTAAGCCCAACGATGCCGTTTTCTT
1 GGGATTTAGCGGCGTTTCGGAAAAAACGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
*
7748079 AGCTTTCG
66 AGCTTTCC
7748087 GGGATTTAGCGGCGTTT
1 GGGATTTAGCGGCGTTT
7748104 TTCGGAAAGC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 20 0.26
73 41 0.53
74 17 0.22
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (73 bp):
GGGATTTAGCGGCGTTTCGGAAAAAACGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
AGCTTTCC
Found at i:7748117 original size:73 final size:74
Alignment explanation
Indices: 7747941--7748123 Score: 212
Period size: 73 Copynumber: 2.5 Consensus size: 74
7747931 CAAATGCTCA
* **
7747941 GGGATTTAGCGGCG--TTTCGGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTC
1 GGGATTTAGCGGCGTTTTTC-G-GAAAGCGCCGCTAATGAACCTAAGCCCAACGACGCCGTTTTC
7748004 TGAGCTTTTCC
64 TGAGCTTTTCC
* * ** * * *
7748015 GGGATTTAGTGGCGTTTCT-AAAAAACGCCGCTAATGAACCTAAGCCCAACGATGCCGTTTTCTT
1 GGGATTTAGCGGCGTTTTTCGGAAAGCGCCGCTAATGAACCTAAGCCCAACGACGCCGTTTTCTG
*
7748079 AGC-TTTCG
66 AGCTTTTCC
*
7748087 GGGATTTAGCGGCGTTTTTCGGAAAGCGCCGGTAATG
1 GGGATTTAGCGGCGTTTTTCGGAAAGCGCCGCTAATG
7748124 CTCAAGGATT
Statistics
Matches: 89, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
72 21 0.24
73 53 0.60
74 13 0.15
76 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (74 bp):
GGGATTTAGCGGCGTTTTTCGGAAAGCGCCGCTAATGAACCTAAGCCCAACGACGCCGTTTTCTG
AGCTTTTCC
Found at i:7748394 original size:21 final size:21
Alignment explanation
Indices: 7748370--7748425 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
7748360 GGATTTAAGG
*
7748370 TTTAGGGGTTA-GGTGTTATGC
1 TTTAGGGGTTAGGGT-TTATAC
*
7748391 TTTAAGGGTTAGGGTTTATAC
1 TTTAGGGGTTAGGGTTTATAC
*
7748412 TTTAGGGGTAAGGG
1 TTTAGGGGTTAGGG
7748426 GATTTAGGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.20, C:0.04, G:0.38, T:0.39
Consensus pattern (21 bp):
TTTAGGGGTTAGGGTTTATAC
Found at i:7748433 original size:16 final size:16
Alignment explanation
Indices: 7748412--7748442 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7748402 GGGTTTATAC
7748412 TTTAGGGGTAAGGGGA
1 TTTAGGGGTAAGGGGA
7748428 TTTAGGGGTAAGGGG
1 TTTAGGGGTAAGGGG
7748443 TTAGGGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.52, T:0.26
Consensus pattern (16 bp):
TTTAGGGGTAAGGGGA
Found at i:7749131 original size:20 final size:20
Alignment explanation
Indices: 7749106--7749146 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7749096 AATACATAAG
7749106 AAATGAAATAAAAAAAC-AAA
1 AAATGAAA-AAAAAAACTAAA
*
7749126 AAATGACAAAAAAAACTAAA
1 AAATGAAAAAAAAAACTAAA
7749146 A
1 A
7749147 TTTACAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.78, C:0.07, G:0.05, T:0.10
Consensus pattern (20 bp):
AAATGAAAAAAAAAACTAAA
Found at i:7750196 original size:55 final size:55
Alignment explanation
Indices: 7750131--7750237 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
7750121 TGTATCTTGA
7750131 TTTAGAGTCCAAGTTCAATCACCAAGCTTGTACAAGTTTGTTTGGGAATTTGAGG
1 TTTAGAGTCCAAGTTCAATCACCAAGCTTGTACAAGTTTGTTTGGGAATTTGAGG
*
7750186 TTTAGAGTCCAAGTTCAATCACCAAGCTTGTACAAGTTTGTTTTGGAATTTG
1 TTTAGAGTCCAAGTTCAATCACCAAGCTTGTACAAGTTTGTTTGGGAATTTG
7750238 GGAATTTTTG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (55 bp):
TTTAGAGTCCAAGTTCAATCACCAAGCTTGTACAAGTTTGTTTGGGAATTTGAGG
Found at i:7751290 original size:39 final size:36
Alignment explanation
Indices: 7751231--7751371 Score: 140
Period size: 39 Copynumber: 3.7 Consensus size: 36
7751221 TAACAGAATG
* *
7751231 TTAAATACATGACTTACTAAAATTTAAGTATATATTAC
1 TTAAATACATTACTTACTAAAATTTAA-T-TACATTAC
** *
7751269 ATTACTTACATTACTTACTAAAATAT-ATTACATTAC
1 -TTAAATACATTACTTACTAAAATTTAATTACATTAC
*
7751305 TTAAATATATTACTTACTAAAATTTATAACTTACATTAC
1 TTAAATACATTACTTACTAAAA-TT-TAA-TTACATTAC
*
7751344 TTAAATATATTACATTACTTAAAATTTA
1 TTAAATACATTAC-TTAC-TAAAATTTA
7751372 TATATATATA
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
35 19 0.22
36 8 0.09
37 2 0.02
38 2 0.02
39 45 0.52
40 6 0.07
41 5 0.06
ACGTcount: A:0.44, C:0.12, G:0.01, T:0.43
Consensus pattern (36 bp):
TTAAATACATTACTTACTAAAATTTAATTACATTAC
Found at i:7751304 original size:18 final size:18
Alignment explanation
Indices: 7751278--7751368 Score: 105
Period size: 18 Copynumber: 4.9 Consensus size: 18
7751268 CATTACTTAC
7751278 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
*
7751295 ATTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
7751313 ATTAC-TTACTAAAATTTAT
1 ATTACATTACTAAAA--TAT
*
7751332 AACTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
7751352 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
7751369 TTATATATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
17 13 0.21
18 25 0.40
19 9 0.14
20 4 0.06
21 4 0.06
22 8 0.13
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:7751965 original size:9 final size:9
Alignment explanation
Indices: 7751947--7752498 Score: 128
Period size: 9 Copynumber: 64.8 Consensus size: 9
7751937 TAATAAATAA
*
7751947 AACTTGCAT
1 AACTTACAT
7751956 AACTTACAT
1 AACTTACAT
*
7751965 AA-TAACATAAT
1 AACTTAC---AT
7751976 AACTTACAT
1 AACTTACAT
*
7751985 AA-TCCACA-
1 AACT-TACAT
7751993 AACTTACAT
1 AACTTACAT
*
7752002 AACTTAAAT
1 AACTTACAT
7752011 AACTTACAT
1 AACTTACAT
* *
7752020 -A-GTGCAT
1 AACTTACAT
**
7752027 AACTTTGAT
1 AACTTACAT
*
7752036 AACTAACAT
1 AACTTACAT
* *
7752045 TA--TACAC
1 AACTTACAT
7752052 AACTTACAT
1 AACTTACAT
7752061 AACTTACAT
1 AACTTACAT
*
7752070 AACTTAAAT
1 AACTTACAT
7752079 AACTTACAT
1 AACTTACAT
7752088 AA--TACAT
1 AACTTACAT
7752095 AACTT-CGAT
1 AACTTAC-AT
*
7752104 AACTAACAT
1 AACTTACAT
* *
7752113 TA--TACAC
1 AACTTACAT
7752120 AACTTACAT
1 AACTTACAT
7752129 AA--TACAT
1 AACTTACAT
** *
7752136 TTCTTGCAT
1 AACTTACAT
7752145 AACTTACAT
1 AACTTACAT
* *
7752154 TA--TACAC
1 AACTTACAT
7752161 AACTTA-ATT
1 AACTTACA-T
*
7752170 AATATTATACAT
1 -A-ACT-TACAT
*
7752182 AACATACAT
1 AACTTACAT
7752191 AA--TACAT
1 AACTTACAT
*
7752198 AA--TACAC
1 AACTTACAT
7752205 AACTTA-ATT
1 AACTTACA-T
*
7752214 AATATTATACAT
1 -A-ACT-TACAT
7752226 AACTTACAT
1 AACTTACAT
*
7752235 -A-GTACAT
1 AACTTACAT
*
7752242 AACTAACAT
1 AACTTACAT
*
7752251 -A-GTACAT
1 AACTTACAT
*
7752258 AACATACAT
1 AACTTACAT
7752267 AA--TACAT
1 AACTTACAT
*
7752274 AA--TACAC
1 AACTTACAT
7752281 AACTTA-ATT
1 AACTTACA-T
*
7752290 AAAATTATACAT
1 --AACT-TACAT
7752302 AA--TACAT
1 AACTTACAT
7752309 AA--TACAT
1 AACTTACAT
7752316 AA--TACAT
1 AACTTACAT
*
7752323 AGCTTACAT
1 AACTTACAT
*
7752332 AAATTACAT
1 AACTTACAT
*
7752341 AA--TACAC
1 AACTTACAT
7752348 AACTTACAT
1 AACTTACAT
*
7752357 AA--TACAC
1 AACTTACAT
7752364 AACTTA-ATT
1 AACTTACA-T
*
7752373 AATATTATACAT
1 -A-ACT-TACAT
*
7752385 AACATACAT
1 AACTTACAT
7752394 AA--TACAT
1 AACTTACAT
7752401 AACTTACAT
1 AACTTACAT
* *
7752410 -A-GTACAC
1 AACTTACAT
*
7752417 AACTAACAT
1 AACTTACAT
*
7752426 AA--TACAC
1 AACTTACAT
*
7752433 AATTTACAT
1 AACTTACAT
* *
7752442 AGCTTACAG
1 AACTTACAT
7752451 AA--TACAT
1 AACTTACAT
7752458 AACTTACAT
1 AACTTACAT
*
7752467 AACTTATAT
1 AACTTACAT
*
7752476 AA--TACAG
1 AACTTACAT
*
7752483 AACTTTCAT
1 AACTTACAT
*
7752492 AATTTAC
1 AACTTAC
7752499 CTAATACATA
Statistics
Matches: 394, Mismatches: 84, Indels: 130
0.65 0.14 0.21
Matches are distributed among these distances:
7 123 0.31
8 22 0.06
9 204 0.52
10 10 0.03
11 16 0.04
12 15 0.04
13 4 0.01
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:7751986 original size:17 final size:17
Alignment explanation
Indices: 7751966--7752020 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
7751956 AACTTACATA
7751966 ATAACATAATAACTTAC
1 ATAACATAATAACTTAC
*
7751983 ATAATCCA-CA-AACTTAC
1 ATAA--CATAATAACTTAC
*
7752000 ATAACTTAAATAACTTAC
1 ATAACAT-AATAACTTAC
7752018 ATA
1 ATA
7752021 GTGCATAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
15 1 0.03
17 16 0.53
18 11 0.37
19 2 0.07
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAACATAATAACTTAC
Found at i:7752031 original size:34 final size:34
Alignment explanation
Indices: 7751973--7752493 Score: 127
Period size: 32 Copynumber: 15.9 Consensus size: 34
7751963 ATAATAACAT
7751973 AATAACTTACATAATCCACA-AACTTACATAACTTA
1 AATAACTTACATAAT--ACATAACTTACATAACTTA
* * **
7752008 AATAACTTACATAGTGCATAACTTTGATAAC-TA
1 AATAACTTACATAATACATAACTTACATAACTTA
* *
7752041 ACATTA--TACACAACTTACATAACTTACATAACTTA
1 A-ATAACTTACATAA--TACATAACTTACATAACTTA
7752076 AATAACTTACATAATACATAACTT-CGATAAC-TA
1 AATAACTTACATAATACATAACTTAC-ATAACTTA
* * ** *
7752109 ACATTA--TACACAACTTACATAA--TACATTTCTTG
1 A-ATAACTTACATAA--TACATAACTTACATAACTTA
* * * *
7752142 CATAACTTACATTATACACAACTTA-ATTAATATTA
1 AATAACTTACATAATACATAACTTACA-TAA-CTTA
* *
7752177 TACATAACATACATAATACATAA--TACACAACTTA
1 -A-ATAACTTACATAATACATAACTTACATAACTTA
* * *
7752211 ATTAA--T--ATTATACATAACTTACAT-A-GTA
1 AATAACTTACATAATACATAACTTACATAACTTA
* * * *
7752239 CATAACTAACATAGTACATAACATACATAA--TA
1 AATAACTTACATAATACATAACTTACATAACTTA
* * *
7752271 CATAA--TACA-CA-ACTTAA-TTA-A-AA-TTA
1 AATAACTTACATAATACATAACTTACATAACTTA
*
7752297 TACATAA--TACATAATACATAA--TACATAGCTTA
1 -A-ATAACTTACATAATACATAACTTACATAACTTA
* * * *
7752329 CATAAATTACATAATACACAACTTACATAA-TACA
1 AATAACTTACATAATACATAACTTACATAACT-TA
*
7752363 CAACTTAA-TTA-ATATTATACATAACATACATAA--TA
1 -AA--TAACTTACATA--ATACATAACTTACATAACTTA
* * * *
7752398 CATAACTTACATAGTACACAACTAACATAA--TA
1 AATAACTTACATAATACATAACTTACATAACTTA
* * * * *
7752430 CACAATTTACATAGCTTACAGAA--TACATAACTTA
1 AATAACTTACATA--ATACATAACTTACATAACTTA
* * * *
7752464 CATAACTTATATAATACAGAACTTTCATAA
1 AATAACTTACATAATACATAACTTACATAA
7752494 TTTACCTAAT
Statistics
Matches: 357, Mismatches: 74, Indels: 111
0.66 0.14 0.20
Matches are distributed among these distances:
25 2 0.01
26 3 0.01
27 2 0.01
28 28 0.08
29 4 0.01
30 18 0.05
31 1 0.00
32 107 0.30
33 18 0.05
34 101 0.28
35 28 0.08
36 10 0.03
37 35 0.10
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.31
Consensus pattern (34 bp):
AATAACTTACATAATACATAACTTACATAACTTA
Found at i:7752037 original size:25 final size:24
Alignment explanation
Indices: 7751997--7752070 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
7751987 TCCACAAACT
7751997 TACATAACTTAAATAACTTACATA
1 TACATAACTTAAATAACTTACATA
* ** *
7752021 GTGCATAACTTTGATAACTAACATTA
1 -TACATAACTTAAATAACTTACA-TA
* *
7752047 TACACAACTTACATAACTTACATA
1 TACATAACTTAAATAACTTACATA
7752071 ACTTAAATAA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.90
26 2 0.05
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (24 bp):
TACATAACTTAAATAACTTACATA
Found at i:7752066 original size:68 final size:68
Alignment explanation
Indices: 7751993--7752165 Score: 251
Period size: 68 Copynumber: 2.6 Consensus size: 68
7751983 ATAATCCACA
* * *
7751993 AACTTACATAACTTAAATAACTTACATAGTGCATAACTTTGATAACTAACATTATACACAACTTA
1 AACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACAACTTA
7752058 CAT
66 CAT
7752061 AACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACAACTTA
1 AACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACAACTTA
7752126 CAT
66 CAT
** ** * *
7752129 AA--TACATTTCTTGCATAACTTACATTATACACAACTT
1 AACTTACATAACTTAAATAACTTACATAATACATAACTT
7752166 AATTAATATT
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
66 29 0.30
68 67 0.70
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.33
Consensus pattern (68 bp):
AACTTACATAACTTAAATAACTTACATAATACATAACTTCGATAACTAACATTATACACAACTTA
CAT
Found at i:7752081 original size:43 final size:43
Alignment explanation
Indices: 7752024--7752112 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 43
7752014 TTACATAGTG
** * *
7752024 CATAACTTTGATAACTAACATTATACACAACTTAC-ATAACTTA
1 CATAACTTAAATAACTAACATAATACACAACTT-CGATAACTAA
* *
7752067 CATAACTTAAATAACTTACATAATACATAACTTCGATAACTAA
1 CATAACTTAAATAACTAACATAATACACAACTTCGATAACTAA
7752110 CAT
1 CAT
7752113 TATACACAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.31
Consensus pattern (43 bp):
CATAACTTAAATAACTAACATAATACACAACTTCGATAACTAA
Found at i:7752098 original size:16 final size:16
Alignment explanation
Indices: 7752034--7752494 Score: 164
Period size: 16 Copynumber: 28.9 Consensus size: 16
7752024 CATAACTTTG
* *
7752034 ATAACTAACATTATAC
1 ATAACTTACATAATAC
*
7752050 ACAACTTACATAACTTAC
1 ATAACTTACATAA--TAC
*
7752068 ATAACTTAAATAACTTAC
1 ATAACTTACATAA--TAC
*
7752086 ATAA--TACATAACTTC
1 ATAACTTACATAA-TAC
* *
7752101 GATAACTAACATTATAC
1 -ATAACTTACATAATAC
*
7752118 ACAACTTACATAATAC
1 ATAACTTACATAATAC
*
7752134 AT---TT-C-T--TGC
1 ATAACTTACATAATAC
*
7752143 ATAACTTACATTATAC
1 ATAACTTACATAATAC
* *
7752159 ACAACTTAATTAATATTATAC
1 ATAACTT-A--CATA--ATAC
*
7752180 ATAACATACATAATAC
1 ATAACTTACATAATAC
*
7752196 ATAA--TACA-CA-AC
1 ATAACTTACATAATAC
*
7752208 TTAA-TTA-ATATTATAC
1 ATAACTTACATA--ATAC
*
7752224 ATAACTTACATAGTAC
1 ATAACTTACATAATAC
* *
7752240 ATAACTAACATAGTAC
1 ATAACTTACATAATAC
*
7752256 ATAACATACATAATAC
1 ATAACTTACATAATAC
*
7752272 ATAA--TACA-CA-AC
1 ATAACTTACATAATAC
* * *
7752284 TTAA-TTAAAATTATAC
1 ATAACTT-ACATAATAC
7752300 ATAA--TACATAATAC
1 ATAACTTACATAATAC
*
7752314 ATAA--TACATAGCTTAC
1 ATAACTTACATA--ATAC
*
7752330 ATAAATTACATAATAC
1 ATAACTTACATAATAC
*
7752346 ACAACTTACATAATAC
1 ATAACTTACATAATAC
* *
7752362 ACAACTTAATTAATATTATAC
1 ATAACTT-A--CATA--ATAC
*
7752383 ATAACATACATAATAC
1 ATAACTTACATAATAC
*
7752399 ATAACTTACATAGTAC
1 ATAACTTACATAATAC
* *
7752415 ACAACTAACATAATAC
1 ATAACTTACATAATAC
* * *
7752431 ACAATTTACATAGCTTAC
1 ATAACTTACATA--ATAC
*
7752449 AGAA--TACATAACTTAC
1 ATAACTTACATAA--TAC
*
7752465 ATAACTTATATAATAC
1 ATAACTTACATAATAC
* *
7752481 AGAACTTTCATAAT
1 ATAACTTACATAAT
7752495 TTACCTAATA
Statistics
Matches: 340, Mismatches: 62, Indels: 86
0.70 0.13 0.18
Matches are distributed among these distances:
9 4 0.01
11 1 0.00
12 14 0.04
13 8 0.02
14 28 0.08
15 5 0.01
16 193 0.57
17 7 0.02
18 55 0.16
19 5 0.01
20 2 0.01
21 18 0.05
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:7752135 original size:41 final size:41
Alignment explanation
Indices: 7752079--7752166 Score: 133
Period size: 41 Copynumber: 2.1 Consensus size: 41
7752069 TAACTTAAAT
7752079 AACTTACATAATACATAACTT-CGATAACTAACATTATACAC
1 AACTTACATAATACATAACTTGC-ATAACTAACATTATACAC
** *
7752120 AACTTACATAATACATTTCTTGCATAACTTACATTATACAC
1 AACTTACATAATACATAACTTGCATAACTAACATTATACAC
7752161 AACTTA
1 AACTTA
7752167 ATTAATATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (41 bp):
AACTTACATAATACATAACTTGCATAACTAACATTATACAC
Found at i:7752178 original size:21 final size:21
Alignment explanation
Indices: 7752152--7752231 Score: 90
Period size: 21 Copynumber: 3.7 Consensus size: 21
7752142 CATAACTTAC
7752152 ATTATACACAACTTAATTAAT
1 ATTATACACAACTTAATTAAT
* *
7752173 ATTATACATAACATACA-TAAT
1 ATTATACACAACTTA-ATTAAT
*
7752194 ACATAATACACAACTTAATTAAT
1 --ATTATACACAACTTAATTAAT
*
7752217 ATTATACATAACTTA
1 ATTATACACAACTTA
7752232 CATAGTACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
21 30 0.62
22 2 0.04
23 16 0.33
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTATACACAACTTAATTAAT
Found at i:7752197 original size:7 final size:7
Alignment explanation
Indices: 7752185--7752362 Score: 80
Period size: 7 Copynumber: 23.7 Consensus size: 7
7752175 TATACATAAC
7752185 ATACATA
1 ATACATA
7752192 ATACATA
1 ATACATA
*
7752199 ATACACA
1 ATACATA
7752206 ACTTA-ATTA
1 A--TACA-TA
*
7752215 AT--ATT
1 ATACATA
7752220 ATACATA
1 ATACATA
7752227 ACTTACATA
1 A--TACATA
*
7752236 GTACATA
1 ATACATA
7752243 ACTAACATA
1 A-T-ACATA
*
7752252 GTACATAA
1 ATACAT-A
7752260 CATACATA
1 -ATACATA
7752268 ATACATA
1 ATACATA
*
7752275 ATACACA
1 ATACATA
7752282 ACTTA-ATTA
1 A--TACA-TA
*
7752291 A-A-ATT
1 ATACATA
7752296 ATACATA
1 ATACATA
7752303 ATACATA
1 ATACATA
7752310 ATACATA
1 ATACATA
7752317 ATACATA
1 ATACATA
*
7752324 GCTTACATAA
1 --ATACAT-A
7752334 ATTACATA
1 A-TACATA
*
7752342 ATACACA
1 ATACATA
7752349 ACTTACATA
1 A--TACATA
7752358 ATACA
1 ATACA
7752363 CAACTTAATT
Statistics
Matches: 133, Mismatches: 16, Indels: 44
0.69 0.08 0.23
Matches are distributed among these distances:
5 5 0.04
6 4 0.03
7 75 0.56
8 8 0.06
9 40 0.30
10 1 0.01
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.30
Consensus pattern (7 bp):
ATACATA
Found at i:7752207 original size:44 final size:42
Alignment explanation
Indices: 7752149--7752402 Score: 248
Period size: 44 Copynumber: 6.2 Consensus size: 42
7752139 TTGCATAACT
*
7752149 TACATTATACACAACTTAATTAATATTATACATAACATACATAA
1 TACATAATACACAACTTAATTAATATTATACAT-A-ATACATAA
7752193 TACATAATACACAACTTAATTAATATTATACAT-A-AC-T--
1 TACATAATACACAACTTAATTAATATTATACATAATACATAA
* * * *
7752230 TACATAGTACATAAC-TAA--CATA--GTACATAACATACATAA
1 TACATAATACACAACTTAATTAATATTATACAT-A-ATACATAA
*
7752269 TACATAATACACAACTTAATTAAAATTATACATAATACATAA
1 TACATAATACACAACTTAATTAATATTATACATAATACATAA
* * *
7752311 TACATAATACATAGCTTACA-TAA-A-T-TACATAATACACAA
1 TACATAATACACAACTTA-ATTAATATTATACATAATACATAA
7752350 CTTACATAATACACAACTTAATTAATATTATACATAACATACATAA
1 --TACATAATACACAACTTAATTAATATTATACAT-A-ATACATAA
7752396 TACATAA
1 TACATAA
7752403 CTTACATAGT
Statistics
Matches: 173, Mismatches: 16, Indels: 42
0.75 0.07 0.18
Matches are distributed among these distances:
32 5 0.03
34 3 0.02
35 1 0.01
36 5 0.03
37 14 0.08
39 27 0.16
40 7 0.04
41 21 0.12
42 30 0.17
43 3 0.02
44 49 0.28
45 1 0.01
46 7 0.04
ACGTcount: A:0.51, C:0.17, G:0.01, T:0.31
Consensus pattern (42 bp):
TACATAATACACAACTTAATTAATATTATACATAATACATAA
Found at i:7752269 original size:76 final size:73
Alignment explanation
Indices: 7752177--7752431 Score: 273
Period size: 76 Copynumber: 3.3 Consensus size: 73
7752167 ATTAATATTA
* *
7752177 TACATAACATACATAATACATAATACACAACTTAATTAATATTATACATAACTTACATAGTACAT
1 TACATAACATACATAATACATAATACACAACTTAATTAAAATTATACATAA--TACATAATACAT
7752242 AACTAACATAG-
64 AA-T-ACATAGC
7752253 TACATAACATACATAATACATAATACACAACTTAATTAAAATTATACATAATACATAATACATAA
1 TACATAACATACATAATACATAATACACAACTTAATTAAAATTATACATAATACATAATACATAA
7752318 TACATAGC
66 TACATAGC
* *
7752326 TTACATAAATTACATAATACACAACTTACATAATACACAACTTAATTAATATTATACATAACATA
1 -TACAT--A--AC---ATACATAA--TACATAATACACAACTTAATTAAAATTATACAT-A-ATA
7752391 CATAATACATAACTTACATAG-
54 CATAATACATAA--TACATAGC
*
7752412 TACACAAC-TAACATAATACA
1 TACATAACAT-ACATAATACA
7752432 CAATTTACAT
Statistics
Matches: 157, Mismatches: 6, Indels: 32
0.81 0.03 0.16
Matches are distributed among these distances:
72 6 0.04
73 1 0.01
74 18 0.11
76 55 0.35
77 1 0.01
78 7 0.04
81 9 0.06
83 33 0.21
84 1 0.01
85 19 0.12
87 7 0.04
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (73 bp):
TACATAACATACATAATACATAATACACAACTTAATTAAAATTATACATAATACATAATACATAA
TACATAGC
Found at i:7752307 original size:83 final size:83
Alignment explanation
Indices: 7752220--7752402 Score: 230
Period size: 83 Copynumber: 2.2 Consensus size: 83
7752210 AATTAATATT
* *
7752220 ATACATAACTTACATAGTACATAACTAACAT-AGTACATAACATACATAA-TACATAATACACAA
1 ATACATAA--TACATAATACATAACTAACATAAGTACAT-A-ATACACAACTACATAATACACAA
7752283 CTTAATTAAAATTATACAT-A-
62 CTTAATTAAAATTATACATAAC
* * *
7752303 ATACATAATACATAATACATAGCTTACATAAATTACATAATACACAACTTACATAATACACAACT
1 ATACATAATACATAATACATAACTAACAT-AAGTACATAATACACAAC-TACATAATACACAACT
*
7752368 TAATTAATATTATACATAAC
64 TAATTAAAATTATACATAAC
7752388 ATACATAATACATAA
1 ATACATAATACATAA
7752403 CTTACATAGT
Statistics
Matches: 88, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
81 25 0.28
82 1 0.01
83 46 0.52
84 1 0.01
85 15 0.17
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.30
Consensus pattern (83 bp):
ATACATAATACATAATACATAACTAACATAAGTACATAATACACAACTACATAATACACAACTTA
ATTAAAATTATACATAAC
Found at i:7752408 original size:25 final size:25
Alignment explanation
Indices: 7752056--7752509 Score: 166
Period size: 25 Copynumber: 19.3 Consensus size: 25
7752046 ATACACAACT
*
7752056 TACATAACTTACATAACTTAAATAA
1 TACATAACTTACATAACTTACATAA
7752081 CTTACATAA--TACATAACTT-CGATAA
1 --TACATAACTTACATAACTTAC-ATAA
* *
7752106 CTAACATTA--TACACAACTTACATAA
1 -T-ACATAACTTACATAACTTACATAA
** * *
7752131 TACATTTCTTGCATAACTTACATTA
1 TACATAACTTACATAACTTACATAA
* *
7752156 TACACAACTTA-ATTAA--T--ATTA
1 TACATAACTTACA-TAACTTACATAA
*
7752177 TACATAACATACATAA--TACATAA
1 TACATAACTTACATAACTTACATAA
* *
7752200 TACACAACTTA-ATTAA--T--ATTA
1 TACATAACTTACA-TAACTTACATAA
*
7752221 TACATAACTTACAT-A-GTACATAA
1 TACATAACTTACATAACTTACATAA
* *
7752244 CTAACAT-A-GTACATAACATACATAA
1 -T-ACATAACTTACATAACTTACATAA
*
7752269 TACATAA--TACACAACTTA-AT--
1 TACATAACTTACATAACTTACATAA
*
7752289 TA-A-AATTATACATAA--TACATAA
1 TACATAACT-TACATAACTTACATAA
*
7752311 TACATAA--TACATAGCTTACATAAA
1 TACATAACTTACATAACTTACAT-AA
*
7752335 TTACATAA--TACACAACTTACATAA
1 -TACATAACTTACATAACTTACATAA
* *
7752359 TACACAACTTA-ATTAA--T--ATTA
1 TACATAACTTACA-TAACTTACATAA
*
7752380 TACATAACATACATAA--TACATAA
1 TACATAACTTACATAACTTACATAA
* * *
7752403 CTTACAT-A-GTACACAACTAACATAA
1 --TACATAACTTACATAACTTACATAA
* * * *
7752428 TACACAATTTACATAGCTTACAGAA
1 TACATAACTTACATAACTTACATAA
*
7752453 TACATAACTTACATAACTTATATAA
1 TACATAACTTACATAACTTACATAA
* * * *
7752478 TACAGAACTTTCATAATTTACCTAA
1 TACATAACTTACATAACTTACATAA
7752503 TACATAA
1 TACATAA
7752510 ATATATATCA
Statistics
Matches: 330, Mismatches: 54, Indels: 88
0.70 0.11 0.19
Matches are distributed among these distances:
18 2 0.01
19 3 0.01
20 5 0.02
21 60 0.18
22 8 0.02
23 69 0.21
24 17 0.05
25 158 0.48
26 1 0.00
27 7 0.02
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.31
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:7758034 original size:21 final size:21
Alignment explanation
Indices: 7757991--7758058 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
7757981 CTACAACTTA
* * *
7757991 AAGCAAAGGCAGCA-CGAGGG
1 AAGCAGAGGCTGCAGCGAGAG
*
7758011 AAGCAGAGGCTGTAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
* *
7758032 AAGCAGAGGCTGCAGCGCGAA
1 AAGCAGAGGCTGCAGCGAGAG
7758053 AAGCAG
1 AAGCAG
7758059 CGAGAGAAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 11 0.28
21 29 0.73
ACGTcount: A:0.37, C:0.19, G:0.40, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:7758488 original size:42 final size:42
Alignment explanation
Indices: 7758422--7758558 Score: 213
Period size: 42 Copynumber: 3.2 Consensus size: 42
7758412 CAAAATTAAT
*
7758422 GGCGTTTTTTATAAGAGCGCCGCTAAAGAACATGATCTTTAGC
1 GGCGTTTTTTATTA-AGCGCCGCTAAAGAACATGATCTTTAGC
*
7758465 GGTGTCTTTTT-TTAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GGCGT-TTTTTATTAAGCGCCGCTAAAGAACATGATCTTTAGC
*
7758507 GGCGTTTTTTATTAAGCGCCGCTAAAGAACATGACCTTTAGC
1 GGCGTTTTTTATTAAGCGCCGCTAAAGAACATGATCTTTAGC
*
7758549 GGCATTTTTT
1 GGCGTTTTTT
7758559 TCTGTAAACG
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
41 5 0.06
42 71 0.82
43 6 0.07
44 5 0.06
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
GGCGTTTTTTATTAAGCGCCGCTAAAGAACATGATCTTTAGC
Found at i:7760495 original size:29 final size:30
Alignment explanation
Indices: 7760453--7760512 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
7760443 ATCGTTGCCA
*
7760453 CAACTAATTATC-TTCAACGACAAATTCAT
1 CAACCAATTATCTTTCAACGACAAATTCAT
*
7760482 CAACCAATTATCTTTCAACGATAAATTCAT
1 CAACCAATTATCTTTCAACGACAAATTCAT
7760512 C
1 C
7760513 CCTTGCGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.40, C:0.25, G:0.03, T:0.32
Consensus pattern (30 bp):
CAACCAATTATCTTTCAACGACAAATTCAT
Found at i:7764482 original size:18 final size:18
Alignment explanation
Indices: 7764421--7764473 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
7764411 AGCAACTTGA
7764421 GTTGAGCTTGCACTTTTG
1 GTTGAGCTTGCACTTTTG
7764439 GTTGAGCTTGCACTTTTG
1 GTTGAGCTTGCACTTTTG
7764457 GTTGAGCTTGCAGCTTT
1 GTTGAGCTTGCA-CTTT
7764474 AGATGAGCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 30 0.88
19 4 0.12
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.43
Consensus pattern (18 bp):
GTTGAGCTTGCACTTTTG
Found at i:7768379 original size:12 final size:12
Alignment explanation
Indices: 7768362--7768386 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7768352 GGTGTTCATT
7768362 CGGTTAACCGAC
1 CGGTTAACCGAC
7768374 CGGTTAACCGAC
1 CGGTTAACCGAC
7768386 C
1 C
7768387 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:7768560 original size:9 final size:9
Alignment explanation
Indices: 7768546--7768601 Score: 94
Period size: 9 Copynumber: 6.2 Consensus size: 9
7768536 TTTGGTTAAA
*
7768546 AATTACCCG
1 AATTAACCG
*
7768555 AATTACCCG
1 AATTAACCG
7768564 AATTAACCG
1 AATTAACCG
7768573 AATTAACCG
1 AATTAACCG
7768582 AATTAACCG
1 AATTAACCG
7768591 AATTAACCG
1 AATTAACCG
7768600 AA
1 AA
7768602 AAATACCCGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.43, C:0.25, G:0.11, T:0.21
Consensus pattern (9 bp):
AATTAACCG
Found at i:7771133 original size:44 final size:44
Alignment explanation
Indices: 7771083--7771177 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
7771073 TGTTATTTTG
7771083 GCTTGCACCCACTC-GAGCTTGCATTTAGACCGGCCGCCACTTCA
1 GCTTGCACCCACTCAG-GCTTGCATTTAGACCGGCCGCCACTTCA
* * * * * *
7771127 GCTTGCACCCATTCAGGTTTGCATTTAGACTGTCCGCCGCTTCG
1 GCTTGCACCCACTCAGGCTTGCATTTAGACCGGCCGCCACTTCA
7771171 GCTTGCA
1 GCTTGCA
7771178 ATTTGATAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.16, C:0.35, G:0.22, T:0.27
Consensus pattern (44 bp):
GCTTGCACCCACTCAGGCTTGCATTTAGACCGGCCGCCACTTCA
Found at i:7771198 original size:16 final size:16
Alignment explanation
Indices: 7771179--7771214 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7771169 CGGCTTGCAA
*
7771179 TTTGATAGGCTCACAC
1 TTTGACAGGCTCACAC
*
7771195 TTTGACAGGCTCGCAC
1 TTTGACAGGCTCACAC
7771211 TTTG
1 TTTG
7771215 CTTACTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.33
Consensus pattern (16 bp):
TTTGACAGGCTCACAC
Found at i:7772890 original size:49 final size:49
Alignment explanation
Indices: 7772817--7773052 Score: 219
Period size: 49 Copynumber: 4.8 Consensus size: 49
7772807 AGGGAATGAG
*
7772817 ATCCCATGTAAGACCATGTCTGGGATATGGCATTTGCA-GTACAAGAAAC
1 ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACG-ACAAGAAAC
* * * * * * *
7772866 ATCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAG
1 ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CGACAAGAAAC
* * * * * * *
7772916 GTCTCC-CGTAAGACCATGTCTAGGATATGACATGGGCACCGATATGAGAAC
1 ATC-CCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CGACAAGA-AAC
* *
7772967 -TCTCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACAAGAAAC
1 ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACG-ACAAGAAAC
* *
7773015 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA
7773053 TGTTATTATC
Statistics
Matches: 149, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.03
49 72 0.48
50 69 0.46
51 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
ATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACGACAAGAAAC
Found at i:7772933 original size:50 final size:50
Alignment explanation
Indices: 7772824--7773052 Score: 173
Period size: 50 Copynumber: 4.6 Consensus size: 50
7772814 GAGATCCCAT
* * * * *
7772824 GTAAGACCATGTCTGGGATATGGCATTTGCA--GTACAAGA-AACATCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCG-AGATGAGAAC-TCTCAC
* * * ** *
7772873 GTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCC
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATGAGAACTCTCAC
* * * * *
7772923 GTAAGACCATGTCTAGGATATGACATGGGCACCGATATGAGAACTCTCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATGAGAACTCTCAC
* * * * *
7772973 GTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAGA-AACATCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCACCG-AGATGAGAAC-TCTCAC
* *
7773022 GTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGATATGGCATTGGCA
7773053 TGTTATTATC
Statistics
Matches: 143, Mismatches: 32, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
48 4 0.03
49 64 0.45
50 73 0.51
51 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATGAGAACTCTCAC
Found at i:7777001 original size:31 final size:31
Alignment explanation
Indices: 7776922--7777006 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
7776912 TTGATATATG
* *
7776922 AACTTTAA-TTTGATGCAATTATACACATGA
1 AACTTTAATTTTGATTCAAATATACACATGA
* * * * *
7776952 AACTTTGATTGTGGTTCAAATGTATACATGA
1 AACTTTAATTTTGATTCAAATATACACATGA
*
7776983 AACTTTAATTTTGATTCAATTATA
1 AACTTTAATTTTGATTCAAATATA
7777007 TGCACATTTA
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
30 7 0.17
31 35 0.83
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (31 bp):
AACTTTAATTTTGATTCAAATATACACATGA
Found at i:7779031 original size:16 final size:18
Alignment explanation
Indices: 7779010--7779042 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
7779000 TTTAATAAGT
7779010 TAATTT-ATA-ATAATTA
1 TAATTTCATATATAATTA
7779026 TAATTTCATATATAATT
1 TAATTTCATATATAATT
7779043 TTAGGATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTTCATATATAATTA
Found at i:7781305 original size:14 final size:15
Alignment explanation
Indices: 7781278--7781306 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7781268 GATGTAGCTT
7781278 AAATAAACTTTGTTC
1 AAATAAACTTTGTTC
7781293 AAATAAA-TTTGTTC
1 AAATAAACTTTGTTC
7781307 TATTCAAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (15 bp):
AAATAAACTTTGTTC
Found at i:7781983 original size:17 final size:18
Alignment explanation
Indices: 7781951--7781985 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7781941 TCTATTTACT
7781951 AAACATAAACTTAACTAA
1 AAACATAAACTTAACTAA
*
7781969 AAACATCAA-TTAACTAA
1 AAACATAAACTTAACTAA
7781986 TTAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (18 bp):
AAACATAAACTTAACTAA
Found at i:7787904 original size:11 final size:11
Alignment explanation
Indices: 7787890--7787915 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7787880 ATTTTTTTAA
7787890 TTTTAAAATAT
1 TTTTAAAATAT
7787901 TTTTAAAATAT
1 TTTTAAAATAT
7787912 TTTT
1 TTTT
7787916 TTATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:7787935 original size:20 final size:19
Alignment explanation
Indices: 7787898--7787936 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7787888 AATTTTAAAA
*
7787898 TATTTTTAAAATATTTTTT
1 TATTTTTAAAATAATTTTT
7787917 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAAT-AATTTTT
7787937 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTTAAAATAATTTTT
Found at i:7788171 original size:12 final size:12
Alignment explanation
Indices: 7788136--7788178 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
7788126 TTAACAAACC
7788136 AAATAAATTTTAAA
1 AAAT-AATTTT-AA
*
7788150 AAAGTAATTTTGA
1 AAA-TAATTTTAA
7788163 AAATAATTTTAA
1 AAATAATTTTAA
7788175 AAAT
1 AAAT
7788179 TATGTTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 12 0.46
13 4 0.15
14 9 0.35
15 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (12 bp):
AAATAATTTTAA
Found at i:7788436 original size:53 final size:53
Alignment explanation
Indices: 7788368--7788472 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
7788358 TCGTGGCAAC
* * *
7788368 AATTTTTATTACCATCTTCGAATTGCCCAA-CCGTATTAAATGTGGCTATTAAA
1 AATTATTATTACCATCTTCCAATTG-CCAAGCCGTATTAAATGTAGCTATTAAA
* **
7788421 AATTATTATTACCATCTTCCAATTGTCAAGCTTTATTAAATGTAGCTATTAA
1 AATTATTATTACCATCTTCCAATTGCCAAGCCGTATTAAATGTAGCTATTAA
7788473 CTTGAATCTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 3 0.07
53 42 0.93
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (53 bp):
AATTATTATTACCATCTTCCAATTGCCAAGCCGTATTAAATGTAGCTATTAAA
Found at i:7789450 original size:43 final size:43
Alignment explanation
Indices: 7789367--7789553 Score: 150
Period size: 43 Copynumber: 4.3 Consensus size: 43
7789357 ACGTCGCTAA
* ** **
7789367 CTTTTGCGGCGCTTACATAAAAAAACGCCACT-AAAGATCATGTT
1 CTTTAGCGGCGCTTA-GGAAAAAAACGCTGCTAAAAG-TCATGTT
*
7789411 CTTTAGCGGCGCTTAGGAAAAAAACGATGCTAAATA-TCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCTGCTAAA-AGTCATGTT
* * ** *
7789454 CTTTAGCAGCGCTTCGGAGGAAAACGCCT-CTAAAAGTAATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACG-CTGCTAAAAGTCATGTT
* *** *
7789497 CTATAGCGGCGCTT-GTTCAAAAACGCCGCTAAAAGT-AGTGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCTGCTAAAAGTCA-TGTT
7789539 CTTTAGCGGCGCTTA
1 CTTTAGCGGCGCTTA
7789554 TTTCACAAAC
Statistics
Matches: 116, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 33 0.28
43 63 0.54
44 17 0.15
45 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGCTTAGGAAAAAAACGCTGCTAAAAGTCATGTT
Found at i:7789519 original size:86 final size:85
Alignment explanation
Indices: 7789388--7789552 Score: 185
Period size: 85 Copynumber: 1.9 Consensus size: 85
7789378 CTTACATAAA
* * *
7789388 AAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGATGCTAAATA-TCA-T
1 AAAACGCCACTAAAGATAATGTTCTATAGCGGCGCTTAGG-AAAAAACGACGCTAAA-AGT-AGT
7789451 GTTCTTTAGCAGCGCTTCGGAGG
63 GTTCTTTAGCAGCGCTTCGGAGG
* ** *
7789474 AAAACGCCTCTAAA-AGTAATGTTCTATAGCGGCGCTT-GTTCAAAAACGCCGCTAAAAGTAGTG
1 AAAACGCCACTAAAGA-TAATGTTCTATAGCGGCGCTTAG-GAAAAAACGACGCTAAAAGTAGTG
*
7789537 TTCTTTAGCGGCGCTT
64 TTCTTTAGCAGCGCTT
7789553 ATTTCACAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
84 2 0.03
85 33 0.49
86 32 0.48
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (85 bp):
AAAACGCCACTAAAGATAATGTTCTATAGCGGCGCTTAGGAAAAAACGACGCTAAAAGTAGTGTT
CTTTAGCAGCGCTTCGGAGG
Found at i:7789530 original size:42 final size:43
Alignment explanation
Indices: 7789474--7789566 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 43
7789464 GCTTCGGAGG
*
7789474 AAAACGCCTCTAAAAGTAATGTTCTATAGCGGCGCTT-GTTCA
1 AAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTAGTTCA
* * *
7789516 AAAACGCCGCTAAAAGTAGTGTTCTTTAGCGGCGCTTATTTCA
1 AAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTAGTTCA
*
7789559 CAAACGCC
1 AAAACGCC
7789567 ACTGTTTTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 34 0.76
43 11 0.24
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
AAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTAGTTCA
Found at i:7789990 original size:12 final size:12
Alignment explanation
Indices: 7789973--7790011 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7789963 TTTTGAACCT
*
7789973 CTGCTTCTATGG
1 CTGCTTCTATCG
*
7789985 CTGCTTCTCTCG
1 CTGCTTCTATCG
*
7789997 CTGCTTCTCTCG
1 CTGCTTCTATCG
7790009 CTG
1 CTG
7790012 TAGCATCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.36, G:0.21, T:0.41
Consensus pattern (12 bp):
CTGCTTCTATCG
Found at i:7790023 original size:21 final size:21
Alignment explanation
Indices: 7789997--7790044 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7789987 GCTTCTCTCG
* *
7789997 CTGCTTCTCTCGCTGTAGCAT
1 CTGCTTCCCTCGCTGCAGCAT
*
7790018 CTGCTTCCCTCGCTGCCGCAT
1 CTGCTTCCCTCGCTGCAGCAT
7790039 CTGCTT
1 CTGCTT
7790045 TAAGTTGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.06, C:0.40, G:0.19, T:0.35
Consensus pattern (21 bp):
CTGCTTCCCTCGCTGCAGCAT
Found at i:7795525 original size:9 final size:9
Alignment explanation
Indices: 7795511--7795761 Score: 158
Period size: 9 Copynumber: 29.8 Consensus size: 9
7795501 AAGTTATTTA
7795511 TTATGTAAG
1 TTATGTAAG
*
7795520 TTATGTAAC
1 TTATGTAAG
*
7795529 TTGTGTAAG
1 TTATGTAAG
7795538 TTATGTAAG
1 TTATGTAAG
* *
7795547 CTGTGTAAG
1 TTATGTAAG
*
7795556 TTGTGT-A-
1 TTATGTAAG
* *
7795563 TTATGAAAC
1 TTATGTAAG
7795572 TTATGTAAG
1 TTATGTAAG
*
7795581 TTGTGT-A-
1 TTATGTAAG
7795588 TTATGTAAG
1 TTATGTAAG
*
7795597 TTATGTCAG
1 TTATGTAAG
*
7795606 TTGTGT-A-
1 TTATGTAAG
* *
7795613 TTATGAAAC
1 TTATGTAAG
7795622 TTATGTAAG
1 TTATGTAAG
*
7795631 TTATGT--C
1 TTATGTAAG
7795638 TTATGTAAG
1 TTATGTAAG
* *
7795647 TGATGTAAA
1 TTATGTAAG
*
7795656 ATATGT-A-
1 TTATGTAAG
7795663 TTATGTAAG
1 TTATGTAAG
*
7795672 TTATGTCAG
1 TTATGTAAG
* *
7795681 GTGTGT-A-
1 TTATGTAAG
*
7795688 TTATGTAAA
1 TTATGTAAG
7795697 TTATGT-A-
1 TTATGTAAG
7795704 TTATGTAAG
1 TTATGTAAG
*
7795713 TTATGTAAT
1 TTATGTAAG
*
7795722 TTGTGT-A-
1 TTATGTAAG
*
7795729 TTATGTAAC
1 TTATGTAAG
* *
7795738 TTATTTAAT
1 TTATGTAAG
7795747 TTATGTAAG
1 TTATGTAAG
7795756 -TATGTA
1 TTATGTA
7795762 TTATTCACTA
Statistics
Matches: 188, Mismatches: 38, Indels: 33
0.73 0.15 0.13
Matches are distributed among these distances:
7 39 0.21
8 20 0.11
9 129 0.69
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7795578 original size:25 final size:25
Alignment explanation
Indices: 7795500--7795703 Score: 185
Period size: 25 Copynumber: 8.1 Consensus size: 25
7795490 GATTTAGGAA
* * *
7795500 TAAGTTATTTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAAGTTATG
* * * *
7795525 TAACTTGTGTAAGTTATGTAAGCTGTG
1 TAAGTTGTGT-A-TTATGAAAGTTATG
*
7795552 TAAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGAAAGTTATG
*
7795577 TAAGTTGTGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAAGTTATG
* *
7795602 TCAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGAAAGTTATG
* * * *
7795627 TAAGTTATGTCTTATGTAAGTGATG
1 TAAGTTGTGTATTATGAAAGTTATG
** * *
7795652 TAAAATATGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAAGTTATG
* *
7795677 TCAGGTGTGTATTATGTAAA-TTATG
1 TAAGTTGTGTATTATG-AAAGTTATG
7795702 TA
1 TA
7795704 TTATGTAAGT
Statistics
Matches: 145, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
25 120 0.83
26 4 0.03
27 21 0.14
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (25 bp):
TAAGTTGTGTATTATGAAAGTTATG
Found at i:7795591 original size:16 final size:16
Alignment explanation
Indices: 7795500--7795719 Score: 111
Period size: 16 Copynumber: 13.7 Consensus size: 16
7795490 GATTTAGGAA
*
7795500 TAAGTTATTTATTATG
1 TAAGTTATGTATTATG
*
7795516 TAAGTTATGTAACTTGTG
1 TAAGTTATGT-A-TTATG
* *
7795534 TAAGTTATGTAAGCTGTG
1 TAAGTTATGT-A-TTATG
*
7795552 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
7795568 -AA---A---CTTATG
1 TAAGTTATGTATTATG
*
7795577 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
7795593 TAAGTTATGTCAGTTGTG
1 TAAGTTATGT-A-TTATG
*
7795611 T-A-TTATGAAACTTATG
1 TAAGTTATG-TA-TTATG
*
7795627 TAAGTTATGTCTTATG
1 TAAGTTATGTATTATG
* *
7795643 TAAGTGATGTAAAATATG
1 TAAGTTATGT--ATTATG
7795661 T-A-TTATGTAAGTTATG
1 TAAGTTATGT-A-TTATG
* * *
7795677 TCAGGTGTGTATTATG
1 TAAGTTATGTATTATG
*
7795693 TAAATTATGTATTATG
1 TAAGTTATGTATTATG
7795709 TAAGTTATGTA
1 TAAGTTATGTA
7795720 ATTTGTGTAT
Statistics
Matches: 155, Mismatches: 30, Indels: 38
0.70 0.13 0.17
Matches are distributed among these distances:
9 5 0.03
10 2 0.01
15 4 0.03
16 88 0.57
17 8 0.05
18 48 0.31
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:7795601 original size:34 final size:35
Alignment explanation
Indices: 7795514--7795601 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 35
7795504 TTATTTATTA
* * *
7795514 TGTAAGTTATGTAACTTGTGTAAGTTATGTAAGCTG
1 TGTAAGTTATGTAA-TTATGAAACTTATGTAAGCTG
* *
7795550 TGTAAGTTGTGT-ATTATGAAACTTATGTAAGTTG
1 TGTAAGTTATGTAATTATGAAACTTATGTAAGCTG
7795584 TGT-A-TTATGTAAGTTATG
1 TGTAAGTTATGTAA-TTATG
7795602 TCAGTTGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
32 5 0.11
33 2 0.05
34 25 0.57
35 1 0.02
36 11 0.25
ACGTcount: A:0.28, C:0.03, G:0.24, T:0.44
Consensus pattern (35 bp):
TGTAAGTTATGTAATTATGAAACTTATGTAAGCTG
Found at i:7795613 original size:50 final size:50
Alignment explanation
Indices: 7795500--7795703 Score: 219
Period size: 50 Copynumber: 4.0 Consensus size: 50
7795490 GATTTAGGAA
* * * * * * *
7795500 TAAGTTATTTATTATGTAAGTTATGTAACTTGTGTAAGTTATGTAAGCTGTG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGT-A-TTATGTAAGTTATG
7795552 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
* * * *
7795602 TCAGTTGTGTATTATGAAACTTATGTAAGTTATGTCTTATGTAAGTGATG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
** * * * * * *
7795652 TAAAATATGTATTATGTAAGTTATGTCAGGTGTGTATTATGTAAATTATG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
7795702 TA
1 TA
7795704 TTATGTAAGT
Statistics
Matches: 129, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
50 98 0.76
51 1 0.01
52 30 0.23
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (50 bp):
TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
Found at i:7795617 original size:41 final size:41
Alignment explanation
Indices: 7795572--7795760 Score: 173
Period size: 41 Copynumber: 4.8 Consensus size: 41
7795562 ATTATGAAAC
* *
7795572 TTATGTAAGTTGTGTATTATGTAAGTTATGTCAGTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
7795613 TTATG--AA--A---CTTATGTAAGTTATGTC--TTATGTAA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGT-A
* * *
7795646 GTGATGTAAAATATGTATTATGTAAGTTATGTCAGGTGTGTA
1 -TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
7795688 TTATGTAAATTATGTATTATGTAAGTTATGTAATTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
7795729 TTATGTAACTTATTTAATTTATGTAAG-TATGT
1 TTATGTAAATTATGT-A-TTATGTAAGTTATGT
7795761 ATTATTCACT
Statistics
Matches: 120, Mismatches: 15, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
32 5 0.04
33 1 0.01
34 20 0.17
36 2 0.02
38 1 0.01
39 1 0.01
41 70 0.58
42 7 0.06
43 13 0.11
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.48
Consensus pattern (41 bp):
TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
Found at i:7795716 original size:25 final size:25
Alignment explanation
Indices: 7795688--7795753 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
7795678 CAGGTGTGTA
* *
7795688 TTATGTAAATTATGTATTATGTAAG
1 TTATGTAATTTATGTATTATGTAAC
*
7795713 TTATGTAATTTGTGTATTATGTAAC
1 TTATGTAATTTATGTATTATGTAAC
*
7795738 TTATTTAATTTATGTA
1 TTATGTAATTTATGTA
7795754 AGTATGTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.53
Consensus pattern (25 bp):
TTATGTAATTTATGTATTATGTAAC
Found at i:7795893 original size:24 final size:26
Alignment explanation
Indices: 7795850--7795904 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 26
7795840 TTATGTACGG
*
7795850 TATGTGTTATTATGTAAGTTATTTAT
1 TATGTGTTATTATGTAAGTTATGTAT
*
7795876 TATGT-TTGTTATGT-AGTTATGTAT
1 TATGTGTTATTATGTAAGTTATGTAT
7795900 TATGT
1 TATGT
7795905 AAGATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 14 0.52
25 8 0.30
26 5 0.19
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (26 bp):
TATGTGTTATTATGTAAGTTATGTAT
Found at i:7795894 original size:94 final size:93
Alignment explanation
Indices: 7795696--7795906 Score: 220
Period size: 94 Copynumber: 2.3 Consensus size: 93
7795686 TATTATGTAA
*
7795696 ATTATGTA-TTATGTAAGTTATGTAATTTGTGTATTATGTAACTTATTTAATTTATGTAAGTATG
1 ATTATGTAGTTATGTAAGTTATGTAATTTGTGTATCATGTAACTTATTTAATTTATGTAAGTATG
*
7795760 TATTATTCACTAATTTATTATGTAGGAT
66 TATTATTCACTAAGTTATTATGTAGGAT
* ** *
7795788 ATTATCTAAGTTATGTAAGTT-T-TTTTTTGGTGTATCATGTAACTTATTTAATTTATGTACGGT
1 ATTATGT-AGTTATGTAAGTTATGTAATTT-GTGTATCATGTAACTTATTTAATTTATGTA-AGT
* * **
7795851 ATGTGTTATT-ATGTAAGTTATTTAT-TATGTTT
63 ATGTATTATTCA-CTAAGTTA-TTATGTA-GGAT
*
7795883 GTTATGTAGTTATGT-A-TTATGTAA
1 ATTATGTAGTTATGTAAGTTATGTAA
7795907 GATATATAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
92 12 0.12
93 34 0.35
94 39 0.41
95 11 0.11
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (93 bp):
ATTATGTAGTTATGTAAGTTATGTAATTTGTGTATCATGTAACTTATTTAATTTATGTAAGTATG
TATTATTCACTAAGTTATTATGTAGGAT
Found at i:7796098 original size:15 final size:15
Alignment explanation
Indices: 7796078--7796110 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7796068 ATAAAATTTT
*
7796078 ATAAATTTAATAGTA
1 ATAAATTTAATACTA
7796093 ATAAATTTAATACTA
1 ATAAATTTAATACTA
7796108 ATA
1 ATA
7796111 TAGAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:7796241 original size:17 final size:15
Alignment explanation
Indices: 7796195--7796242 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
7796185 TTTTATAGGT
7796195 TATATTAAAACAATA
1 TATATTAAAACAATA
*
7796210 TATA-TAATACTAATA
1 TATATTAAAAC-AATA
7796225 TAGATATTAAAACAATA
1 T--ATATTAAAACAATA
7796242 T
1 T
7796243 TTATAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 5 0.19
15 9 0.33
17 8 0.30
18 5 0.19
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (15 bp):
TATATTAAAACAATA
Found at i:7796263 original size:177 final size:177
Alignment explanation
Indices: 7795967--7796353 Score: 729
Period size: 177 Copynumber: 2.2 Consensus size: 177
7795957 AATAAATTTA
* *
7795967 ATATTAAAACAATATTTATAATTATTTTGAAAACTTTTAAATTTTATAGGTTATATTAAAACAAT
1 ATATTAAAACAATATTTATAATTATTTAGAAAACGTTTAAATTTTATAGGTTATATTAAAACAAT
*
7796032 ATTTATAATACTAATATAGATATTAAAACAATATTTATAAAATTTTATAAATTTAATAGTAATAA
66 ATATATAATACTAATATAGATATTAAAACAATATTTATAAAATTTTATAAATTTAATAGTAATAA
7796097 ATTTAATACTAATATAGAAACCTTATAAATTTAGAAAACTTATATAG
131 ATTTAATACTAATATAGAAACCTTATAAATTTAGAAAACTTATATAG
*
7796144 ATATTAAAACAATATTTATAATAATTTAGAAAACGTTTAAATTTTATAGGTTATATTAAAACAAT
1 ATATTAAAACAATATTTATAATTATTTAGAAAACGTTTAAATTTTATAGGTTATATTAAAACAAT
7796209 ATATATAATACTAATATAGATATTAAAACAATATTTATAAAATTTTATAAATTTAATAGTAATAA
66 ATATATAATACTAATATAGATATTAAAACAATATTTATAAAATTTTATAAATTTAATAGTAATAA
*
7796274 ATTTAATACTAATATAGAAACCTTATAAATTTAGAAAACTTATATCG
131 ATTTAATACTAATATAGAAACCTTATAAATTTAGAAAACTTATATAG
7796321 ATATTAAAACAATATTTATAATTATTTAGAAAA
1 ATATTAAAACAATATTTATAATTATTTAGAAAA
7796354 TGTTATCATT
Statistics
Matches: 204, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 204 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (177 bp):
ATATTAAAACAATATTTATAATTATTTAGAAAACGTTTAAATTTTATAGGTTATATTAAAACAAT
ATATATAATACTAATATAGATATTAAAACAATATTTATAAAATTTTATAAATTTAATAGTAATAA
ATTTAATACTAATATAGAAACCTTATAAATTTAGAAAACTTATATAG
Found at i:7796275 original size:15 final size:15
Alignment explanation
Indices: 7796255--7796287 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7796245 ATAAAATTTT
*
7796255 ATAAATTTAATAGTA
1 ATAAATTTAATACTA
7796270 ATAAATTTAATACTA
1 ATAAATTTAATACTA
7796285 ATA
1 ATA
7796288 TAGAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:7798292 original size:40 final size:39
Alignment explanation
Indices: 7798246--7798324 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
7798236 TGGGGATTTA
* * *
7798246 GGGAAATTAAATCGGGGAAACTGGGGGAATAGGAATTGGG
1 GGGAAATGAAATCGGGG-AACTGGGGGAATACGAAATGGG
*
7798286 GGGAAATGAAATCGGGGAATTGGGGGAATACGAAATGGG
1 GGGAAATGAAATCGGGGAACTGGGGGAATACGAAATGGG
7798325 AAATTAGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 19 0.54
40 16 0.46
ACGTcount: A:0.35, C:0.05, G:0.43, T:0.16
Consensus pattern (39 bp):
GGGAAATGAAATCGGGGAACTGGGGGAATACGAAATGGG
Found at i:7798320 original size:24 final size:23
Alignment explanation
Indices: 7798277--7798329 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7798267 TGGGGGAATA
*
7798277 GGAATTGGGGGGAAATGAAATCGG
1 GGAATTGGGGGGAAACGAAAT-GG
7798301 GGAATT-GGGGGAATACGAAATGG
1 GGAATTGGGGGGAA-ACGAAATGG
*
7798324 GAAATT
1 GGAATT
7798330 AGGGAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.36, C:0.04, G:0.42, T:0.19
Consensus pattern (23 bp):
GGAATTGGGGGGAAACGAAATGG
Found at i:7799929 original size:265 final size:265
Alignment explanation
Indices: 7799489--7800291 Score: 1221
Period size: 265 Copynumber: 3.1 Consensus size: 265
7799479 TATTTTGCTT
* * *
7799489 TTTTGCGGCATTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTTCGTTT
1 TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTTT
*
7799554 TGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAAA
66 TGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAAA
* * * *
7799619 CACTGCATTTTGTTAAGAAACGTTGCGGCGC-TT-GATCCAAAGCGCCGCTAAAGCTATTCTTTA
131 CACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCT-C-AAGCGCCGCTAAAGCTATTCTTTA
7799682 ACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
194 ACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
7799747 TAAGATA
259 TAAGATA
* *
7799754 TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTAAAGTATACATCGAGACCAAAATGGTGCGTTT
1 TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTTT
* * *
7799819 TGCTTCAGATATTTTGCGGTGTTTTCCTATACGCGCCACTAAATGTAACATAGCTTAAGACCAAA
66 TGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAAA
* * * *
7799884 CACTGCGTTTTGTTAAGATATTTTGCGACGCTTTGGCTCAAGCGCCGCTAATGATATTCTTTAAC
131 CACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAAC
* *
7799949 GGCGTTTTCTAGAAAGCGCCAC-----TAA-TATA-ATCAAAATTAAAACTACGC-ATTTAGTTA
196 GGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTTA
7800006 AGATA
261 AGATA
* * *
7800011 TTTTTGCGGCGTTTTAACGTCGGCACCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
1 -TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* *
7800076 TTGGTTCAGATTTTTTACGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
65 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* * *
7800141 ACACTGCGTTTTGTTAAGTTATGTTGCGGCGCTTTGGCTCAACCGCCGCTAAATCTATTCTTTAA
130 ACACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
* * *
7800206 CGTCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAATATTAAAACTACGCGTTTTAGTA
195 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
7800271 AAGATA
260 AAGATA
*
7800277 TTTTGTGGCGCTTTC
1 TTTTGCGGCG-TTTC
7800292 TACGAAACGC
Statistics
Matches: 483, Mismatches: 43, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
257 13 0.03
258 217 0.45
259 4 0.01
260 3 0.01
263 3 0.01
264 4 0.01
265 219 0.45
266 18 0.04
267 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (265 bp):
TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTTT
TGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAAA
CACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAAC
GGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTTA
AGATA
Found at i:7800118 original size:258 final size:259
Alignment explanation
Indices: 7799488--7800280 Score: 1146
Period size: 258 Copynumber: 3.0 Consensus size: 259
7799478 GTATTTTGCT
* *
7799488 TTTTTGCGGCATTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTTCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
*
7799553 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACAAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* * * * *
7799618 ACACTGCATTTTGTTAAGAAACGTTGCGGCGC-TT-GATCCAAAGCGCCGCTAAAGCTATTCTTT
131 ACACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCT-C-AAGCGCCGCTAATGCTATTCTTT
*
7799681 AACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAG
194 AACGGCGTTTTCTAGTAAGCGCCAC-----TAA-TATA-ATCAAAATTAAAACTACGCGATTTAG
7799746 TTAAGATA
252 TTAAGATA
* * *
7799754 -TTTTGCGGCGTTTCAACGTCAGCGCCACTAATTAAAGTATACATCGAGACCAAAATGGTGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
7799818 TTGCTTCAGATATTTTGCGGTGTTTTCCTATACGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* * *
7799883 ACACTGCGTTTTGTTAAGATATTTTGCGACGCTTTGGCTCAAGCGCCGCTAATGATATTCTTTAA
131 ACACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCTAATGCTATTCTTTAA
*
7799948 CGGCGTTTTCTAGAAAGCGCCACTAATATAATCAAAATTAAAACTACGC-ATTTAGTTAAGATA
196 CGGCGTTTTCTAGTAAGCGCCACTAATATAATCAAAATTAAAACTACGCGATTTAGTTAAGATA
* *
7800011 TTTTTGCGGCGTTTTAACGTCGGCACCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* *
7800076 TTGGTTCAGATTTTTTACGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* *
7800141 ACACTGCGTTTTGTTAAGTTATGTTGCGGCGCTTTGGCTCAACCGCCGCTAAAT-CTATTCTTTA
131 ACACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCT-AATGCTATTCTTTA
* *
7800205 ACGTCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAATATTAAAACTACGCGTTTTAGT
195 ACGGCGTTTTCTAGTAAGCGCCACTAATAT-A--AT-CA--AA-ATTAAAACTACGCGATTTAGT
*
7800270 AAAGATA
253 TAAGATA
7800277 TTTT
1 TTTT
7800281 GTGGCGCTTT
Statistics
Matches: 477, Mismatches: 38, Indels: 24
0.88 0.07 0.04
Matches are distributed among these distances:
257 13 0.03
258 221 0.46
259 8 0.02
260 3 0.01
261 2 0.00
262 2 0.00
264 2 0.00
265 205 0.43
266 19 0.04
267 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (259 bp):
TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
ACACTGCGTTTTGTTAAGATATGTTGCGGCGCTTTGGCTCAAGCGCCGCTAATGCTATTCTTTAA
CGGCGTTTTCTAGTAAGCGCCACTAATATAATCAAAATTAAAACTACGCGATTTAGTTAAGATA
Found at i:7800416 original size:116 final size:113
Alignment explanation
Indices: 7800260--7800500 Score: 263
Period size: 113 Copynumber: 2.1 Consensus size: 113
7800250 TTAAAACTAC
* * * * * *
7800260 GCGTTTTAGTAAAGATATTTTGTGGCGCTTTCTACGAAACGCCGCTAATACGGTGCCTTAGCAGT
1 GCGTTTTGGTTAAGATATTTTGCGGCGCTATCTACAAAACGCCGCTAAGAC---GCCTTAGC-G-
7800325 GC-ATATCACA-AAGCGCCACTAAATCTAGGATACATCAACACCAAAAACGAT
61 GCGATATCACAGAAGCGCCACTAAATCTAGGATACATCAACACCAAAAACGAT
* * * *
7800376 GCGTTTTGGTTAAGATATTTTGCGGCGCATATC-GCAAAACGCCGCTAAGACGCTTTTGCGGCGT
1 GCGTTTTGGTTAAGATATTTTGCGGCGC-TATCTACAAAACGCCGCTAAGACGCCTTAGCGGCGA
* *** * *
7800440 TTTTTGAGAAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGAT
65 TATCACAGAAGCGCCACTAAATCTAGGATACATCAACACCAAAAACGAT
7800489 GCGTTTTGGTTA
1 GCGTTTTGGTTA
7800501 GGAGAAATTA
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
111 2 0.02
112 4 0.04
113 57 0.54
116 40 0.38
117 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (113 bp):
GCGTTTTGGTTAAGATATTTTGCGGCGCTATCTACAAAACGCCGCTAAGACGCCTTAGCGGCGAT
ATCACAGAAGCGCCACTAAATCTAGGATACATCAACACCAAAAACGAT
Found at i:7800488 original size:113 final size:114
Alignment explanation
Indices: 7800335--7800586 Score: 337
Period size: 113 Copynumber: 2.2 Consensus size: 114
7800325 GCATATCACA
* * ** *
7800335 AAGCGCCACTAAATCTAGGATACATCAACACCAAAAACGATGCGTTTTGGTTAAGATATTTTGCG
1 AAGCGCCACTAATTCTAGGATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
* *
7800400 GCGC-ATATCGCAAAACGCCGCTAAGACGCTTTTGCGGCGT-TTTTTGAG
66 GCGCGATATCGCAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTT-AG
* *
7800448 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGAAATTACG
1 AAGCGCCACTAATTCTAGGATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
* * * * *
7800513 GCGCGCTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTTG
66 GCGCGATATCGCAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTAG
* *
7800562 AAGCGCCACTAATTCTTGCATACAT
1 AAGCGCCACTAATTCTAGGATACAT
7800587 GAAGACGAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
113 62 0.51
114 54 0.45
115 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (114 bp):
AAGCGCCACTAATTCTAGGATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
GCGCGATATCGCAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTAG
Found at i:7801960 original size:37 final size:35
Alignment explanation
Indices: 7801867--7801960 Score: 91
Period size: 37 Copynumber: 2.5 Consensus size: 35
7801857 GTCTCCAAAT
* * *
7801867 TCACATTTCAGTTCAATTTCACTTTTTCACTTTCAA
1 TCACAATTCAATTCAA-TTCACTTTTCCACTTTCAA
*
7801903 TCACAATTCAATTCAAAATTCACTTTTCCATTTTTCAA
1 TCACAATTCAATTC--AATTCACTTTTCCA-CTTTCAA
7801941 GTCA-ATATTCAATTCAATTC
1 -TCACA-ATTCAATTCAATTC
7801961 CACACATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
36 12 0.24
37 16 0.33
38 9 0.18
39 12 0.24
ACGTcount: A:0.31, C:0.23, G:0.02, T:0.44
Consensus pattern (35 bp):
TCACAATTCAATTCAATTCACTTTTCCACTTTCAA
Found at i:7803164 original size:3 final size:3
Alignment explanation
Indices: 7803156--7803181 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7803146 AACTTATTTC
7803156 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
7803182 TTATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7805900 original size:18 final size:18
Alignment explanation
Indices: 7805877--7805916 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
7805867 CAGATCGACG
*
7805877 AGAATTGCAACCTGGATC
1 AGAATTGCAACCTAGATC
7805895 AGAATTGCAACCTAGATC
1 AGAATTGCAACCTAGATC
7805913 AGAA
1 AGAA
7805917 GGTAAAGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (18 bp):
AGAATTGCAACCTAGATC
Found at i:7807751 original size:84 final size:84
Alignment explanation
Indices: 7807646--7807814 Score: 266
Period size: 84 Copynumber: 2.0 Consensus size: 84
7807636 CCTACAGTCA
* * *
7807646 GCCCATTATTTTGTCCAAAAACATGTCCAACAGACTGGCTTGCATTCGGCCCAAAACGCTCCCCA
1 GCCCACTATTTTGTCCAAAAACAGGTCCAACAGACTGGCCTGCATTCGGCCCAAAACGCTCCCCA
7807711 GCAAACTGCACTTGAAACT
66 GCAAACTGCACTTGAAACT
* * *
7807730 GCCCACTATTTTGTCCAAAAACAGGTCCAATAGACTGGCCTGCATTCGGCCCAAAACGCTGCCTA
1 GCCCACTATTTTGTCCAAAAACAGGTCCAACAGACTGGCCTGCATTCGGCCCAAAACGCTCCCCA
* *
7807795 GCAGACTGCCCTTGAAACT
66 GCAAACTGCACTTGAAACT
7807814 G
1 G
7807815 GCCTGCATAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (84 bp):
GCCCACTATTTTGTCCAAAAACAGGTCCAACAGACTGGCCTGCATTCGGCCCAAAACGCTCCCCA
GCAAACTGCACTTGAAACT
Found at i:7814022 original size:23 final size:23
Alignment explanation
Indices: 7813986--7814116 Score: 94
Period size: 23 Copynumber: 5.7 Consensus size: 23
7813976 TACCTTTCAC
7813986 AATTTTATGG-ATTTGTTTGGCTA
1 AATTTTA-GGCATTTGTTTGGCTA
*
7814009 AATTTTAGGCATTTGTCTT-TC-A
1 AATTTTAGGCATTTGT-TTGGCTA
*
7814031 CAATTTTATGG-ATTTGATTGGCTA
1 -AATTTTA-GGCATTTGTTTGGCTA
* *
7814055 AATTGTAGGCATTTGTCTT--CCA
1 AATTTTAGGCATTTGT-TTGGCTA
* *
7814077 TAATTTTAGGGATTTGTTTGGTTA
1 -AATTTTAGGCATTTGTTTGGCTA
* *
7814101 AATTGTGGGCATTTGT
1 AATTTTAGGCATTTGT
7814117 CTTCCACAAT
Statistics
Matches: 84, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
22 11 0.13
23 65 0.77
24 8 0.10
ACGTcount: A:0.22, C:0.08, G:0.21, T:0.48
Consensus pattern (23 bp):
AATTTTAGGCATTTGTTTGGCTA
Found at i:7814046 original size:46 final size:46
Alignment explanation
Indices: 7813983--7814141 Score: 246
Period size: 46 Copynumber: 3.5 Consensus size: 46
7813973 AGTTACCTTT
* *
7813983 CACAATTTTATGGATTTGTTTGGCTAAATTTTAGGCATTTGTCTTT
1 CACAATTTTATGGATTTGTTTGGCTAAATTGTAGGCATTTGTCTTC
*
7814029 CACAATTTTATGGATTTGATTGGCTAAATTGTAGGCATTTGTCTTC
1 CACAATTTTATGGATTTGTTTGGCTAAATTGTAGGCATTTGTCTTC
* * * *
7814075 CATAATTTTAGGGATTTGTTTGGTTAAATTGTGGGCATTTGTCTTC
1 CACAATTTTATGGATTTGTTTGGCTAAATTGTAGGCATTTGTCTTC
*
7814121 CACAATTTTAAGGATTTGTTT
1 CACAATTTTATGGATTTGTTT
7814142 ATATTTTATT
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 103 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (46 bp):
CACAATTTTATGGATTTGTTTGGCTAAATTGTAGGCATTTGTCTTC
Found at i:7818290 original size:44 final size:44
Alignment explanation
Indices: 7818246--7818546 Score: 338
Period size: 44 Copynumber: 6.8 Consensus size: 44
7818236 AAAGATATTG
* * * **
7818246 GATTTGTCGCTTCAATCTGCTCCACTACAACTTCT-GGGAAATTG
1 GATTTGTAGCTTCAATCTGCTCTACTACAACTT-TAGGGAGATAA
* * *
7818290 GATTTATAGCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTACAACTTTAGGGAGATAA
* * ** *
7818334 GATTTTTAGCTTCAATTTGCTCTACTGTAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTACAACTTTAGGGAGATAA
* * *
7818378 GATTCGCTATCTTCAATCTGCTCTACTACAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCTACTACAACTTTAGGGAGATAA
* *
7818423 GGTTTGTAGCTTCAATCTGCTCTACTACAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCTACTACAACTTTAGGGAGATAA
* * *
7818467 GA-TCGCTATCTTCAATCTGCTAC-ACTACAACTTTAAGGAGATAA
1 GATTTG-TAGCTTCAATCTGCT-CTACTACAACTTTAGGGAGATAA
* *
7818511 GATTTGTAGCTTCAATATGCTCCACTACAACTTTAG
1 GATTTGTAGCTTCAATCTGCTCTACTACAACTTTAG
7818547 AGATATAATA
Statistics
Matches: 216, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
43 3 0.01
44 174 0.81
45 39 0.18
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCTACTACAACTTTAGGGAGATAA
Found at i:7818346 original size:88 final size:88
Alignment explanation
Indices: 7818246--7818564 Score: 390
Period size: 88 Copynumber: 3.6 Consensus size: 88
7818236 AAAGATATTG
* * * ** ** *
7818246 GATTTGTCGCTTCAATCTGCTCCACTACAACTTCT-GGGAAATTGGATTTATAGCTTCAATCTGC
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTT-TAGAGAGATAAGATTGCTATCTTCAATCTGC
*
7818310 TCTACTGCAACTTCAGGGAGATAA
65 TCTACTACAACTTCAGGGAGATAA
* * * **
7818334 GATTTTTAGCTTCAATTTGCTCTACTGTAACTTTAGAGAGATAAGATTCGCTATCTTCAATCTGC
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTTAGAGAGATAAGATT-GCTATCTTCAATCTGC
7818399 TCTACTACAACTTCAGGGAGATAA
65 TCTACTACAACTTCAGGGAGATAA
* * *
7818423 GGTTTGTAGCTTCAATCTGCTCTACTACAACTTTAGAGAGATAAGATCGCTATCTTCAATCTGCT
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTTAGAGAGATAAGATTGCTATCTTCAATCTGCT
* *
7818488 AC-ACTACAACTTTAAGGAGATAA
66 -CTACTACAACTTCAGGGAGATAA
* * *
7818511 GATTTGTAGCTTCAATATGCTCCACTACAACTTTAGAGATATAATATTAGCTAT
1 GATTTGTAGCTTCAATCTGCTCCACTACAACTTTAGAGAGATAAGATT-GCTAT
7818565 GATGACTTCA
Statistics
Matches: 199, Mismatches: 28, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.01
88 114 0.57
89 84 0.42
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (88 bp):
GATTTGTAGCTTCAATCTGCTCCACTACAACTTTAGAGAGATAAGATTGCTATCTTCAATCTGCT
CTACTACAACTTCAGGGAGATAA
Found at i:7818410 original size:133 final size:132
Alignment explanation
Indices: 7818254--7818543 Score: 361
Period size: 133 Copynumber: 2.2 Consensus size: 132
7818244 TGGATTTGTC
* * *
7818254 GCTTCAATCTGCTCCACTACAACTTCTGGGAAAT-TGGATTTATAGCTTCAATCTGCTCTACTGC
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAAATAAGG-TTTATAGCTTCAATCTGCTCTACTAC
* *** * **
7818318 AACTTCAGGGAGATAAGATTTTTAGCTTCAATTTGCT-CTACTGTAACTTT-AGAGAGATAAGAT
65 AACTTCAGAGAGATAAGATCGCTAGCTTCAATCTGCTAC-ACTACAACTTTAAG-GAGATAAGAT
7818381 TCGCTA
128 TCG-TA
* * * *
7818387 TCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGGTTTGTAGCTTCAATCTGCTCTACTACA
1 GCTTCAATCTGCTCCACTACAACTTCAGGGAAATAAGGTTTATAGCTTCAATCTGCTCTACTACA
* * *
7818452 ACTTTAGAGAGATAAGATCGCTATCTTCAATCTGCTACACTACAACTTTAAGGAGATAAGATTTG
66 ACTTCAGAGAGATAAGATCGCTAGCTTCAATCTGCTACACTACAACTTTAAGGAGATAAGATTCG
7818517 TA
131 TA
*
7818519 GCTTCAATATGCTCCACTACAACTT
1 GCTTCAATCTGCTCCACTACAACTT
7818544 TAGAGATATA
Statistics
Matches: 134, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
132 24 0.18
133 105 0.78
134 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (132 bp):
GCTTCAATCTGCTCCACTACAACTTCAGGGAAATAAGGTTTATAGCTTCAATCTGCTCTACTACA
ACTTCAGAGAGATAAGATCGCTAGCTTCAATCTGCTACACTACAACTTTAAGGAGATAAGATTCG
TA
Found at i:7818412 original size:89 final size:89
Alignment explanation
Indices: 7818299--7818564 Score: 392
Period size: 89 Copynumber: 3.0 Consensus size: 89
7818289 GGATTTATAG
* * * **
7818299 CTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTTTAGCTTCAATTTGCTCTACTGTAA
1 CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATATGCTCTACTACAA
7818364 CTTTAGAGAGATAAGATTCGCTAT
66 CTTTAGAGAGATAAGATTCGCTAT
* *
7818388 CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGGTTTGTAGCTTCAATCTGCTCTACTACAA
1 CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATATGCTCTACTACAA
7818453 CTTTAGAGAGATAAGA-TCGCTAT
66 CTTTAGAGAGATAAGATTCGCTAT
* * *
7818476 CTTCAATCTGCTAC-ACTACAACTTTAAGGAGATAAGATTTGTAGCTTCAATATGCTCCACTACA
1 CTTCAATCTGCT-CTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATATGCTCTACTACA
* * *
7818540 ACTTTAGAGATATAATATTAGCTAT
65 ACTTTAGAGAGATAAGATTCGCTAT
7818565 GATGACTTCA
Statistics
Matches: 161, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
88 79 0.49
89 82 0.51
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (89 bp):
CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATATGCTCTACTACAA
CTTTAGAGAGATAAGATTCGCTAT
Found at i:7829401 original size:6 final size:6
Alignment explanation
Indices: 7829392--7829441 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
7829382 AGCATAATTA
* * * *
7829392 TAATAT TAATAT TAATAT TAATAT TCATAT TCATAT TCATAT TCATAT
1 TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT TAATAT
7829440 TA
1 TA
7829442 GTAATAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:7829413 original size:18 final size:18
Alignment explanation
Indices: 7829392--7829441 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
7829382 AGCATAATTA
*
7829392 TAATATTAATATTAATAT
1 TAATATTCATATTAATAT
*
7829410 TAATATTCATATTCATAT
1 TAATATTCATATTAATAT
*
7829428 TCATATTCATATTA
1 TAATATTCATATTA
7829442 GTAATAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATTCATATTAATAT
Found at i:7829857 original size:8 final size:8
Alignment explanation
Indices: 7829837--7829941 Score: 60
Period size: 8 Copynumber: 13.8 Consensus size: 8
7829827 AGAATTAAAA
7829837 TAAA-AAG
1 TAAATAAG
7829844 TAAATAAG
1 TAAATAAG
*
7829852 TGAATAA-
1 TAAATAAG
* *
7829859 TATATAAA
1 TAAATAAG
7829867 TAAATAAG
1 TAAATAAG
**
7829875 TAAATGGG
1 TAAATAAG
*
7829883 TAAATAAA
1 TAAATAAG
*
7829891 TGAATAAAG
1 TAAAT-AAG
7829900 T-AA-AAG
1 TAAATAAG
*
7829906 -GAAT-AG
1 TAAATAAG
* *
7829912 TGAATAAA
1 TAAATAAG
*
7829920 TATATAAG
1 TAAATAAG
7829928 TAAATAAG
1 TAAATAAG
7829936 TAAATA
1 TAAATA
7829942 GATGAATAAA
Statistics
Matches: 74, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
6 7 0.09
7 13 0.18
8 51 0.69
9 3 0.04
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (8 bp):
TAAATAAG
Found at i:7829966 original size:61 final size:62
Alignment explanation
Indices: 7829806--7829968 Score: 167
Period size: 61 Copynumber: 2.6 Consensus size: 62
7829796 AAGATGAAGG
* * *
7829806 AATAA-TAAATAAATGGATAAAAGAATTAAA-ATAAAAAGTAAATAAGTGAATAATATATAAATA
1 AATAAGTAAATAGATGAATAAAAGAA-TAAATA-AAAAAG-GAATAAGTGAATAATATATAAATA
* * * * *
7829869 AATAAGTAAATGGGTAAATAAATGAATAAAGT--AAAAGGAAT-AGTGAATAAATATATAAGTA
1 AATAAGTAAATAGATGAATAAAAGAATAAA-TAAAAAAGGAATAAGTGAAT-AATATATAAATA
7829930 AATAAGTAAATAGATGAATAAAAGAA-AAATAAAAAAGGA
1 AATAAGTAAATAGATGAATAAAAGAATAAATAAAAAAGGA
7829969 CTTATGTGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
59 1 0.01
60 10 0.12
61 43 0.52
62 5 0.06
63 9 0.11
64 14 0.17
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.23
Consensus pattern (62 bp):
AATAAGTAAATAGATGAATAAAAGAATAAATAAAAAAGGAATAAGTGAATAATATATAAATA
Found at i:7834236 original size:59 final size:59
Alignment explanation
Indices: 7834171--7834290 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 59
7834161 AAACAAACAC
7834171 TGAAAATTATTATGTTGCTCTAACTTTTCATTATTCTTGAAGTACCTGTATATGGTACT
1 TGAAAATTATTATGTTGCTCTAACTTTTCATTATTCTTGAAGTACCTGTATATGGTACT
*
7834230 TGAAAATTATTGTGTTGCTCTAACTTTTCATTATTCTTGAAGTACCTGTATATGGTACT
1 TGAAAATTATTATGTTGCTCTAACTTTTCATTATTCTTGAAGTACCTGTATATGGTACT
7834289 TG
1 TG
7834291 TGTTATCCGG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (59 bp):
TGAAAATTATTATGTTGCTCTAACTTTTCATTATTCTTGAAGTACCTGTATATGGTACT
Found at i:7836526 original size:21 final size:21
Alignment explanation
Indices: 7836485--7836528 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7836475 TATTTTCTGT
* *
7836485 TTTAGTTGCAATGTAATTTAG
1 TTTAGTTGAAATGTAACTTAG
7836506 TTTAGTTGAAAATGT-ACTTAG
1 TTTAGTTG-AAATGTAACTTAG
7836527 TT
1 TT
7836529 GTTGTTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.30, C:0.05, G:0.18, T:0.48
Consensus pattern (21 bp):
TTTAGTTGAAATGTAACTTAG
Found at i:7839631 original size:43 final size:43
Alignment explanation
Indices: 7839578--7839743 Score: 260
Period size: 43 Copynumber: 3.9 Consensus size: 43
7839568 CTTAAAGGTA
7839578 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCC
1 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCC
* * * *
7839621 ATGTTCTTTAGTGGCACTTTTCCCGCAAACGCTGCTAAAGGCC
1 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCC
* *
7839664 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGTTAAAGGTC
1 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCC
* *
7839707 ATGTACTTTAGCGGTGCTTTTCCCACAAACGCCGCTA
1 ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTA
7839744 TTGTTTGGTG
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 110 1.00
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (43 bp):
ATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGCC
Done.